Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80262.t1 | RZB99279.1 | 100 | 181 | 0 | 0 | 1 | 181 | 17 | 197 | 3.60E-98 | 367.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80262.t1 | P51823 | 99.4 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 2.6e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80262.t1 | A0A1U7V2M3 | 100.0 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.6e-98 | 367.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80262.t1 | MTR_5g034130 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene80262.t1 | MTR_5g034125 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene80262.t1 | MTR_1g086480 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 6.88e-135 | 374 |
| MS.gene80262.t1 | MTR_6g005820 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 9.56e-135 | 374 |
| MS.gene80262.t1 | MTR_7g109960 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 6.38e-134 | 372 |
| MS.gene80262.t1 | MTR_5g016540 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 1.47e-120 | 338 |
| MS.gene80262.t1 | MTR_4g128910 | 63.277 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 3.37e-84 | 246 |
| MS.gene80262.t1 | MTR_5g007810 | 61.582 | 177 | 68 | 0 | 1 | 177 | 1 | 177 | 4.35e-83 | 244 |
| MS.gene80262.t1 | MTR_4g077640 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 2.31e-80 | 237 |
| MS.gene80262.t1 | MTR_5g007820 | 55.495 | 182 | 79 | 1 | 1 | 180 | 1 | 182 | 2.90e-75 | 224 |
| MS.gene80262.t1 | MTR_1g076550 | 51.934 | 181 | 87 | 0 | 1 | 181 | 1 | 181 | 1.18e-67 | 204 |
| MS.gene80262.t1 | MTR_5g007840 | 42.723 | 213 | 77 | 2 | 1 | 180 | 1 | 201 | 8.01e-57 | 177 |
| MS.gene80262.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 1.01e-49 | 159 |
| MS.gene80262.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 43 | 206 | 1.51e-49 | 159 |
| MS.gene80262.t1 | MTR_2g022200 | 34.831 | 178 | 105 | 2 | 5 | 173 | 5 | 180 | 4.22e-37 | 127 |
| MS.gene80262.t1 | MTR_5g078090 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 1.05e-30 | 110 |
| MS.gene80262.t1 | MTR_5g015370 | 32.065 | 184 | 122 | 2 | 1 | 181 | 1 | 184 | 5.42e-30 | 108 |
| MS.gene80262.t1 | MTR_8g077540 | 51.020 | 98 | 46 | 2 | 18 | 114 | 17 | 113 | 1.85e-28 | 103 |
| MS.gene80262.t1 | MTR_4g026950 | 31.847 | 157 | 106 | 1 | 18 | 173 | 1 | 157 | 5.08e-26 | 97.8 |
| MS.gene80262.t1 | MTR_2g034640 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.01e-24 | 95.5 |
| MS.gene80262.t1 | MTR_7g112090 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 2.77e-24 | 94.4 |
| MS.gene80262.t1 | MTR_4g121860 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 7.47e-23 | 90.5 |
| MS.gene80262.t1 | MTR_1g062760 | 34.118 | 85 | 52 | 1 | 18 | 98 | 15 | 99 | 2.54e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80262.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene80262.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene80262.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene80262.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene80262.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene80262.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene80262.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene80262.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80262.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80262.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80262.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80262.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80262.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80262.t1 | AT1G23490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80262.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80262.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene80262.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene80262.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene80262.t1 | AT5G14670 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.05e-132 | 369 |
| MS.gene80262.t1 | AT2G15310 | 67.403 | 181 | 59 | 0 | 1 | 181 | 1 | 181 | 2.79e-91 | 265 |
| MS.gene80262.t1 | AT2G24765 | 62.147 | 177 | 67 | 0 | 1 | 177 | 1 | 177 | 1.42e-84 | 247 |
| MS.gene80262.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene80262.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene80262.t1 | AT3G03120 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 4.48e-81 | 239 |
| MS.gene80262.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene80262.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene80262.t1 | AT2G24765 | 64.844 | 128 | 45 | 0 | 1 | 128 | 1 | 128 | 1.19e-60 | 185 |
| MS.gene80262.t1 | AT3G03120 | 63.077 | 130 | 48 | 0 | 1 | 130 | 1 | 130 | 4.95e-60 | 183 |
| MS.gene80262.t1 | AT1G02430 | 48.936 | 188 | 82 | 5 | 1 | 176 | 1 | 186 | 9.40e-57 | 177 |
| MS.gene80262.t1 | AT1G02440 | 46.237 | 186 | 90 | 4 | 1 | 176 | 1 | 186 | 7.38e-56 | 175 |
| MS.gene80262.t1 | AT2G18390 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 3.51e-49 | 157 |
| MS.gene80262.t1 | AT1G02430 | 47.205 | 161 | 75 | 4 | 1 | 153 | 1 | 159 | 5.08e-45 | 146 |
| MS.gene80262.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene80262.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene80262.t1 | AT3G49870 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 3.21e-32 | 114 |
| MS.gene80262.t1 | AT5G67560 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 2.52e-31 | 112 |
| MS.gene80262.t1 | AT5G37680 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 4.83e-30 | 108 |
| MS.gene80262.t1 | AT3G49870 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 5.25e-29 | 105 |
| MS.gene80262.t1 | AT3G49860 | 32.530 | 166 | 111 | 1 | 16 | 180 | 10 | 175 | 2.42e-28 | 104 |
| MS.gene80262.t1 | AT1G02440 | 33.766 | 154 | 66 | 3 | 1 | 153 | 1 | 119 | 1.15e-26 | 98.6 |
| MS.gene80262.t1 | AT1G09180 | 32.961 | 179 | 104 | 2 | 13 | 177 | 16 | 192 | 2.74e-25 | 97.1 |
| MS.gene80262.t1 | AT3G62560 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.22e-24 | 95.1 |
| MS.gene80262.t1 | AT5G37680 | 32.812 | 128 | 86 | 0 | 46 | 173 | 2 | 129 | 4.55e-24 | 92.0 |
| MS.gene80262.t1 | AT1G56330 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 4.74e-24 | 93.6 |
| MS.gene80262.t1 | AT4G02080 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 5.17e-24 | 93.6 |
Find 55 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACATTAGTTTCACTGTTT+GGG | 0.305601 | 5.4:+24133973 | MS.gene80262:CDS |
| AGAACATTAGTTTCACTGTT+TGG | 0.307350 | 5.4:+24133972 | MS.gene80262:CDS |
| TTCCAACAACATCGCAAATA+AGG | 0.337127 | 5.4:+24135113 | MS.gene80262:CDS |
| ATATAAGACCCTGAGTGTTC+TGG | 0.338828 | 5.4:-24134154 | None:intergenic |
| GGAGGGTCTTTATGAAGGTT+TGG | 0.372234 | 5.4:+24135083 | MS.gene80262:CDS |
| CAGAGCACTTGTGCCACCTC+TGG | 0.372609 | 5.4:+24135060 | MS.gene80262:CDS |
| CAGTCGGTTATTTGCGAAGA+AGG | 0.396684 | 5.4:+24133065 | MS.gene80262:CDS |
| CTCAGCTGCATTCATTGCAT+TGG | 0.411804 | 5.4:-24134903 | None:intergenic |
| TACCTTATTTGCGATGTTGT+TGG | 0.434472 | 5.4:-24135115 | None:intergenic |
| CAGAGGTGGCACAAGTGCTC+TGG | 0.435758 | 5.4:-24135059 | None:intergenic |
| AGTTTCACTGTTTGGGATGT+CGG | 0.451828 | 5.4:+24133980 | MS.gene80262:CDS |
| AGCTGAGATTACCGACAAGC+TGG | 0.452916 | 5.4:+24134919 | MS.gene80262:CDS |
| TCTGGGGAGGGTCTTTATGA+AGG | 0.454514 | 5.4:+24135078 | MS.gene80262:CDS |
| TCAGCTGCATTCATTGCATT+GGG | 0.455488 | 5.4:-24134902 | None:intergenic |
| TTGAATAAAATACCTTGTCC+TGG | 0.462109 | 5.4:-24134006 | None:intergenic |
| AGAGCACTTGTGCCACCTCT+GGG | 0.473777 | 5.4:+24135061 | MS.gene80262:CDS |
| CACTTGTGCCACCTCTGGGG+AGG | 0.474754 | 5.4:+24135065 | MS.gene80262:CDS |
| GTCTTTATGAAGGTTTGGAC+TGG | 0.475612 | 5.4:+24135088 | MS.gene80262:CDS |
| CAGAGAAACTTACCGATAGT+AGG | 0.482609 | 5.4:-24133177 | None:intergenic |
| ACTTGTGCCACCTCTGGGGA+GGG | 0.483489 | 5.4:+24135066 | MS.gene80262:CDS |
| CATCCTATGTAGCTCATCTC+TGG | 0.489228 | 5.4:-24134216 | None:intergenic |
| TGTTTGGGATGTCGGAGGCC+AGG | 0.494393 | 5.4:+24133988 | MS.gene80262:CDS |
| TTGTCGTTGACAGCAATGAC+AGG | 0.500098 | 5.4:+24134177 | MS.gene80262:CDS |
| ATTCTCTACAAGCTCAAGCT+TGG | 0.503263 | 5.4:+24133135 | MS.gene80262:CDS |
| TTCTACAGATTCGTCCCTTG+TGG | 0.503875 | 5.4:+24134120 | MS.gene80262:intron |
| ATTGGGAAGATCTTGTTTGT+TGG | 0.504874 | 5.4:-24134885 | None:intergenic |
| AAGCTTGAGCTTGTAGAGAA+TGG | 0.532263 | 5.4:-24133133 | None:intergenic |
| AGGCCAGAGATGAGCTACAT+AGG | 0.552666 | 5.4:+24134213 | MS.gene80262:CDS |
| GAAGGAAATGCGAATTCTGA+TGG | 0.554686 | 5.4:+24133083 | MS.gene80262:CDS |
| ATGGTTGGTCTCGATGCAGC+TGG | 0.564897 | 5.4:+24133102 | MS.gene80262:CDS |
| CATTCACGAAGCTGTTCAGT+CGG | 0.566942 | 5.4:+24133049 | MS.gene80262:CDS |
| AGAGAAACTTACCGATAGTA+GGG | 0.566962 | 5.4:-24133176 | None:intergenic |
| TACAGATTCGTCCCTTGTGG+AGG | 0.570777 | 5.4:+24134123 | MS.gene80262:intron |
| AGAGTGGAGACCCAGCTTGT+CGG | 0.579913 | 5.4:-24134930 | None:intergenic |
| CTGGAAGTAGTGCCTCCACA+AGG | 0.582344 | 5.4:-24134135 | None:intergenic |
| GAAATGCGAATTCTGATGGT+TGG | 0.586975 | 5.4:+24133087 | MS.gene80262:CDS |
| TTCACTGTTTGGGATGTCGG+AGG | 0.592678 | 5.4:+24133983 | MS.gene80262:CDS |
| GTCACCACCATCCCTACTAT+CGG | 0.594267 | 5.4:+24133165 | MS.gene80262:CDS |
| GAGCACTTGTGCCACCTCTG+GGG | 0.595300 | 5.4:+24135062 | MS.gene80262:CDS |
| GCACTACTTCCAGAACACTC+AGG | 0.597040 | 5.4:+24134145 | MS.gene80262:CDS |
| TGACAGGGATAGAGTTGTTG+AGG | 0.602509 | 5.4:+24134193 | MS.gene80262:CDS |
| ACTCTCTTAGACAGCGACAC+TGG | 0.603280 | 5.4:+24134948 | MS.gene80262:CDS |
| CACTACTTCCAGAACACTCA+GGG | 0.606230 | 5.4:+24134146 | MS.gene80262:CDS |
| GGATGTCGGAGGCCAGGACA+AGG | 0.616890 | 5.4:+24133994 | MS.gene80262:CDS |
| GCTGAGATTACCGACAAGCT+GGG | 0.619331 | 5.4:+24134920 | MS.gene80262:CDS |
| AAACTTACCGATAGTAGGGA+TGG | 0.627085 | 5.4:-24133172 | None:intergenic |
| AGTGTCGCTGTCTAAGAGAG+TGG | 0.629372 | 5.4:-24134946 | None:intergenic |
| TGTCGTTGACAGCAATGACA+GGG | 0.631238 | 5.4:+24134178 | MS.gene80262:CDS |
| AGGGTTCAATGTGGAGACTG+TGG | 0.633133 | 5.4:+24133943 | MS.gene80262:intron |
| GCTACATAGGATGTTGAATG+AGG | 0.633182 | 5.4:+24134226 | MS.gene80262:CDS |
| ATAAAGACCCTCCCCAGAGG+TGG | 0.635325 | 5.4:-24135073 | None:intergenic |
| CTTGAGCTTGTAGAGAATGG+TGG | 0.640954 | 5.4:-24133130 | None:intergenic |
| CTTACCGATAGTAGGGATGG+TGG | 0.656172 | 5.4:-24133169 | None:intergenic |
| TGGAAGTAGTGCCTCCACAA+GGG | 0.700224 | 5.4:-24134134 | None:intergenic |
| TTCATAAAGACCCTCCCCAG+AGG | 0.707530 | 5.4:-24135076 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGTATATATGTTTATA+GGG | + | chr5.4:24135331-24135350 | MS.gene80262:intron | 10.0% |
| !! | ATATTATTAAACTACTATAA+TGG | + | chr5.4:24133630-24133649 | MS.gene80262:intron | 10.0% |
| !! | TATTAACAAATAAAAATAGA+GGG | - | chr5.4:24135155-24135174 | None:intergenic | 10.0% |
| !!! | AATTGGAAATATATTAATTT+TGG | - | chr5.4:24135359-24135378 | None:intergenic | 10.0% |
| !!! | ATTCAAATTAATTTTGAAAA+TGG | + | chr5.4:24134023-24134042 | MS.gene80262:intron | 10.0% |
| !!! | ATTTTTTTTTGTTAAATACA+CGG | + | chr5.4:24135304-24135323 | MS.gene80262:intron | 10.0% |
| !!! | GTTATTTTAATTATAATTTC+AGG | + | chr5.4:24134829-24134848 | MS.gene80262:intron | 10.0% |
| !!! | TTGTTTGATATTTTAATTTA+GGG | + | chr5.4:24133924-24133943 | MS.gene80262:intron | 10.0% |
| !!! | TTTGTTTGATATTTTAATTT+AGG | + | chr5.4:24133923-24133942 | MS.gene80262:intron | 10.0% |
| !! | AATTGTATATATGTTTATAG+GGG | + | chr5.4:24135332-24135351 | MS.gene80262:intron | 15.0% |
| !! | GAAATTGTATATATGTTTAT+AGG | + | chr5.4:24135330-24135349 | MS.gene80262:intron | 15.0% |
| !! | GATTTCAATGTTAAATATAA+AGG | - | chr5.4:24133544-24133563 | None:intergenic | 15.0% |
| !! | GTATTAACAAATAAAAATAG+AGG | - | chr5.4:24135156-24135175 | None:intergenic | 15.0% |
| !!! | TATATTTCTGGTAATAAAAT+TGG | - | chr5.4:24135376-24135395 | None:intergenic | 15.0% |
| !! | ATTACCAGAAATATATCTAA+AGG | + | chr5.4:24135381-24135400 | MS.gene80262:intron | 20.0% |
| !! | TAAACCTTTAGATATATTTC+TGG | - | chr5.4:24135388-24135407 | None:intergenic | 20.0% |
| !!! | ATATTGATTTATGAAGAAGA+TGG | + | chr5.4:24134397-24134416 | MS.gene80262:intron | 20.0% |
| !!! | ATATTTTACAAATGCCAAAA+AGG | - | chr5.4:24133396-24133415 | None:intergenic | 20.0% |
| !!! | ATTAATAGCAACATTTTTCT+AGG | - | chr5.4:24135195-24135214 | None:intergenic | 20.0% |
| !!! | TATTGATTTATGAAGAAGAT+GGG | + | chr5.4:24134398-24134417 | MS.gene80262:intron | 20.0% |
| ! | AACATTGAAATCCTAAACTA+TGG | + | chr5.4:24133552-24133571 | MS.gene80262:intron | 25.0% |
| ! | ATTTATTGTGCATTTCGAAA+AGG | - | chr5.4:24135420-24135439 | None:intergenic | 25.0% |
| ! | TAACAAATAAAAATAGAGGG+AGG | - | chr5.4:24135152-24135171 | None:intergenic | 25.0% |
| ! | TCTCAATTGAAATATGCATT+TGG | + | chr5.4:24133669-24133688 | MS.gene80262:intron | 25.0% |
| !! | CATGAACATTTTATACATAG+AGG | - | chr5.4:24134724-24134743 | None:intergenic | 25.0% |
| !! | TAATTAATCTGTGATTTTGC+TGG | + | chr5.4:24134569-24134588 | MS.gene80262:intron | 25.0% |
| !!! | GTACTTTTTTATATTCAGCT+TGG | + | chr5.4:24134248-24134267 | MS.gene80262:intron | 25.0% |
| !!! | TTTTAATTTAGGGTTCAATG+TGG | + | chr5.4:24133934-24133953 | MS.gene80262:intron | 25.0% |
| ACTCATGCGAAAATAAAAGT+TGG | - | chr5.4:24133846-24133865 | None:intergenic | 30.0% | |
| AGAGTTTATTAGAACACAAC+AGG | - | chr5.4:24135019-24135038 | None:intergenic | 30.0% | |
| ATCAGAAGAACTAAATTCGT+AGG | - | chr5.4:24134681-24134700 | None:intergenic | 30.0% | |
| ATCCAGATGCATCTTTATTA+GGG | + | chr5.4:24135501-24135520 | MS.gene80262:intron | 30.0% | |
| ATTAACTGCAACAATGATGA+AGG | - | chr5.4:24134553-24134572 | None:intergenic | 30.0% | |
| CATTCATTTAGATTGTGTAG+TGG | + | chr5.4:24134326-24134345 | MS.gene80262:intron | 30.0% | |
| TATCCAGATGCATCTTTATT+AGG | + | chr5.4:24135500-24135519 | MS.gene80262:intron | 30.0% | |
| TCAGAAGAACTAAATTCGTA+GGG | - | chr5.4:24134680-24134699 | None:intergenic | 30.0% | |
| TGTGTTCTAATAAACTCTTC+TGG | + | chr5.4:24135021-24135040 | MS.gene80262:intron | 30.0% | |
| TTAACTGCAACAATGATGAA+GGG | - | chr5.4:24134552-24134571 | None:intergenic | 30.0% | |
| TTAGTGCCATCAATATAAAC+CGG | - | chr5.4:24134612-24134631 | None:intergenic | 30.0% | |
| TTGAATAAAATACCTTGTCC+TGG | - | chr5.4:24134009-24134028 | None:intergenic | 30.0% | |
| TTTGAGTGAAGATGAAATAG+AGG | - | chr5.4:24135589-24135608 | None:intergenic | 30.0% | |
| ! | AATTTTAAGCTCGATAGACA+TGG | + | chr5.4:24135448-24135467 | MS.gene80262:intron | 30.0% |
| ! | AGAACATTAGTTTCACTGTT+TGG | + | chr5.4:24133972-24133991 | MS.gene80262:CDS | 30.0% |
| ! | GAACATTAGTTTCACTGTTT+GGG | + | chr5.4:24133973-24133992 | MS.gene80262:CDS | 30.0% |
| !!! | AAGTTCATTCGTTTTGATTG+AGG | + | chr5.4:24133714-24133733 | MS.gene80262:intron | 30.0% |
| !!! | GCACATTCTGGAATTTTTTA+TGG | + | chr5.4:24135688-24135707 | MS.gene80262:intron | 30.0% |
| !!! | TTTTGTTGTTAGCTCGATTA+TGG | + | chr5.4:24133206-24133225 | MS.gene80262:intron | 30.0% |
| AACACATTACAGAGAAAGCA+AGG | - | chr5.4:24134779-24134798 | None:intergenic | 35.0% | |
| AATTTCTGTTGAGCTTCTCA+TGG | + | chr5.4:24134517-24134536 | MS.gene80262:intron | 35.0% | |
| ACACGTGTTGTATTAGACAT+TGG | + | chr5.4:24133344-24133363 | MS.gene80262:intron | 35.0% | |
| AGAGAAACTTACCGATAGTA+GGG | - | chr5.4:24133179-24133198 | None:intergenic | 35.0% | |
| AGTTACACTTGCAATGTAAG+TGG | + | chr5.4:24133737-24133756 | MS.gene80262:intron | 35.0% | |
| CACTAAACACTAACTCTACT+AGG | - | chr5.4:24135536-24135555 | None:intergenic | 35.0% | |
| CAGTATCTCTACCAAAATCA+GGG | - | chr5.4:24134436-24134455 | None:intergenic | 35.0% | |
| GAATTAGCATGCAAAGAAGT+CGG | - | chr5.4:24133456-24133475 | None:intergenic | 35.0% | |
| GAGGCAAGTAGTATAAATCA+AGG | - | chr5.4:24135570-24135589 | None:intergenic | 35.0% | |
| GGATCATAATTTCTGATGAC+CGG | + | chr5.4:24134590-24134609 | MS.gene80262:intron | 35.0% | |
| TCAAAACAGTGAAAGCAAGA+AGG | - | chr5.4:24134078-24134097 | None:intergenic | 35.0% | |
| TCAGTATCTCTACCAAAATC+AGG | - | chr5.4:24134437-24134456 | None:intergenic | 35.0% | |
| TCATTTAGATTGTGTAGTGG+CGG | + | chr5.4:24134329-24134348 | MS.gene80262:intron | 35.0% | |
| TCCAGATGCATCTTTATTAG+GGG | + | chr5.4:24135502-24135521 | MS.gene80262:intron | 35.0% | |
| TCTCGACAGATTTAACAATG+TGG | - | chr5.4:24133515-24133534 | None:intergenic | 35.0% | |
| TGTCTGTGCTTCATAGATAA+CGG | - | chr5.4:24133291-24133310 | None:intergenic | 35.0% | |
| TTCCAACAACATCGCAAATA+AGG | + | chr5.4:24135113-24135132 | MS.gene80262:CDS | 35.0% | |
| ! | AATCTGTAGAAGAAAGCACA+AGG | - | chr5.4:24134111-24134130 | None:intergenic | 35.0% |
| ! | AATGCTTTTAGTCCCTGATT+TGG | + | chr5.4:24135261-24135280 | MS.gene80262:intron | 35.0% |
| ! | ACATCTAGGTGTTTTATAGC+TGG | - | chr5.4:24135668-24135687 | None:intergenic | 35.0% |
| ! | ATGCTTTTAGTCCCTGATTT+GGG | + | chr5.4:24135262-24135281 | MS.gene80262:intron | 35.0% |
| ! | ATTGGGAAGATCTTGTTTGT+TGG | - | chr5.4:24134888-24134907 | None:intergenic | 35.0% |
| ! | TACCTTATTTGCGATGTTGT+TGG | - | chr5.4:24135118-24135137 | None:intergenic | 35.0% |
| ! | TATGGCGCTTATTATTTTCC+TGG | + | chr5.4:24135706-24135725 | MS.gene80262:intron | 35.0% |
| ! | TCTGTAGGTTTTCTCCTTTT+TGG | + | chr5.4:24133379-24133398 | MS.gene80262:intron | 35.0% |
| ! | TGATGACCGGTTTATATTGA+TGG | + | chr5.4:24134603-24134622 | MS.gene80262:intron | 35.0% |
| ! | TGGCACTAAGATATGTCTTT+TGG | + | chr5.4:24134623-24134642 | MS.gene80262:intron | 35.0% |
| !! | TAAGTGGTTCTGAACATGTT+AGG | + | chr5.4:24133753-24133772 | MS.gene80262:intron | 35.0% |
| !! | TTTATTTTCGCATGAGTGCT+TGG | + | chr5.4:24133849-24133868 | MS.gene80262:intron | 35.0% |
| AAACAGTGAAAGCAAGAAGG+TGG | - | chr5.4:24134075-24134094 | None:intergenic | 40.0% | |
| AAACTTACCGATAGTAGGGA+TGG | - | chr5.4:24133175-24133194 | None:intergenic | 40.0% | |
| AAGCTTGAGCTTGTAGAGAA+TGG | - | chr5.4:24133136-24133155 | None:intergenic | 40.0% | |
| ACCCCTAATAAAGATGCATC+TGG | - | chr5.4:24135506-24135525 | None:intergenic | 40.0% | |
| AGTCTCATAAGTCCCAAATC+AGG | - | chr5.4:24135277-24135296 | None:intergenic | 40.0% | |
| ATATAAGACCCTGAGTGTTC+TGG | - | chr5.4:24134157-24134176 | None:intergenic | 40.0% | |
| ATTCCAGAATGTGCACATCT+AGG | - | chr5.4:24135682-24135701 | None:intergenic | 40.0% | |
| ATTCTCTACAAGCTCAAGCT+TGG | + | chr5.4:24133135-24133154 | MS.gene80262:CDS | 40.0% | |
| CAGAGAAACTTACCGATAGT+AGG | - | chr5.4:24133180-24133199 | None:intergenic | 40.0% | |
| GAAATGCGAATTCTGATGGT+TGG | + | chr5.4:24133087-24133106 | MS.gene80262:CDS | 40.0% | |
| GAAGGAAATGCGAATTCTGA+TGG | + | chr5.4:24133083-24133102 | MS.gene80262:CDS | 40.0% | |
| GCATCTGGATACATAGAGTT+TGG | - | chr5.4:24135491-24135510 | None:intergenic | 40.0% | |
| GCTACATAGGATGTTGAATG+AGG | + | chr5.4:24134226-24134245 | MS.gene80262:CDS | 40.0% | |
| GTCTCATAAGTCCCAAATCA+GGG | - | chr5.4:24135276-24135295 | None:intergenic | 40.0% | |
| GTCTTTATGAAGGTTTGGAC+TGG | + | chr5.4:24135088-24135107 | MS.gene80262:CDS | 40.0% | |
| TACAGAGAAAGCAAGGAACA+TGG | - | chr5.4:24134772-24134791 | None:intergenic | 40.0% | |
| TCAGCTGCATTCATTGCATT+GGG | - | chr5.4:24134905-24134924 | None:intergenic | 40.0% | |
| TGACACAAGCACCATAGTTT+AGG | - | chr5.4:24133566-24133585 | None:intergenic | 40.0% | |
| ! | AGTTTCACTGTTTGGGATGT+CGG | + | chr5.4:24133980-24133999 | MS.gene80262:CDS | 40.0% |
| !! | GGCACACTAATTTGTTGAGA+TGG | + | chr5.4:24134360-24134379 | MS.gene80262:intron | 40.0% |
| !! | TAAACTCTTCTGGTTCTTCC+AGG | + | chr5.4:24135031-24135050 | MS.gene80262:intron | 40.0% |
| !! | TCCTGGTTTTCTATCATTGC+AGG | + | chr5.4:24135723-24135742 | MS.gene80262:intron | 40.0% |
| ACACCTAGATGTGCACATTC+TGG | + | chr5.4:24135676-24135695 | MS.gene80262:intron | 45.0% | |
| CACTACTTCCAGAACACTCA+GGG | + | chr5.4:24134146-24134165 | MS.gene80262:CDS | 45.0% | |
| CAGTCGGTTATTTGCGAAGA+AGG | + | chr5.4:24133065-24133084 | MS.gene80262:CDS | 45.0% | |
| CATCCTATGTAGCTCATCTC+TGG | - | chr5.4:24134219-24134238 | None:intergenic | 45.0% | |
| CATTCACGAAGCTGTTCAGT+CGG | + | chr5.4:24133049-24133068 | MS.gene80262:CDS | 45.0% | |
| CTCAGCTGCATTCATTGCAT+TGG | - | chr5.4:24134906-24134925 | None:intergenic | 45.0% | |
| CTTGAGCTTGTAGAGAATGG+TGG | - | chr5.4:24133133-24133152 | None:intergenic | 45.0% | |
| GCCTGCAATGATAGAAAACC+AGG | - | chr5.4:24135727-24135746 | None:intergenic | 45.0% | |
| GGAGAAAACCTACAGATCGA+AGG | - | chr5.4:24133375-24133394 | None:intergenic | 45.0% | |
| GGAGGGTCTTTATGAAGGTT+TGG | + | chr5.4:24135083-24135102 | MS.gene80262:CDS | 45.0% | |
| TGACAGGGATAGAGTTGTTG+AGG | + | chr5.4:24134193-24134212 | MS.gene80262:CDS | 45.0% | |
| TGGACATACCTTCGATCTGT+AGG | + | chr5.4:24133364-24133383 | MS.gene80262:intron | 45.0% | |
| TGTCGTTGACAGCAATGACA+GGG | + | chr5.4:24134178-24134197 | MS.gene80262:CDS | 45.0% | |
| TTCTACAGATTCGTCCCTTG+TGG | + | chr5.4:24134120-24134139 | MS.gene80262:intron | 45.0% | |
| TTGTCGTTGACAGCAATGAC+AGG | + | chr5.4:24134177-24134196 | MS.gene80262:CDS | 45.0% | |
| ! | GGTGTTTTATAGCTGGAGCA+CGG | - | chr5.4:24135661-24135680 | None:intergenic | 45.0% |
| ! | TGCTTGTACGACCCTGATTT+TGG | + | chr5.4:24134422-24134441 | MS.gene80262:intron | 45.0% |
| ! | TGTGTAGTGGCGGAAAAGAA+TGG | + | chr5.4:24134339-24134358 | MS.gene80262:intron | 45.0% |
| ! | TTTTATAGCTGGAGCACGGA+AGG | - | chr5.4:24135657-24135676 | None:intergenic | 45.0% |
| !! | AAAAACATAAAAAAATTATA+CGG | - | chr5.4:24135218-24135237 | None:intergenic | 5.0% |
| !! | TGAAATTATAATTAAAATAA+CGG | - | chr5.4:24134830-24134849 | None:intergenic | 5.0% |
| ACTCTCTTAGACAGCGACAC+TGG | + | chr5.4:24134948-24134967 | MS.gene80262:CDS | 50.0% | |
| AGCTGAGATTACCGACAAGC+TGG | + | chr5.4:24134919-24134938 | MS.gene80262:CDS | 50.0% | |
| AGGCCAGAGATGAGCTACAT+AGG | + | chr5.4:24134213-24134232 | MS.gene80262:CDS | 50.0% | |
| AGGGTTCAATGTGGAGACTG+TGG | + | chr5.4:24133943-24133962 | MS.gene80262:intron | 50.0% | |
| CTTACCGATAGTAGGGATGG+TGG | - | chr5.4:24133172-24133191 | None:intergenic | 50.0% | |
| GCACTACTTCCAGAACACTC+AGG | + | chr5.4:24134145-24134164 | MS.gene80262:CDS | 50.0% | |
| GCTGAGATTACCGACAAGCT+GGG | + | chr5.4:24134920-24134939 | MS.gene80262:CDS | 50.0% | |
| GTCACCACCATCCCTACTAT+CGG | + | chr5.4:24133165-24133184 | MS.gene80262:CDS | 50.0% | |
| TACAGATTCGTCCCTTGTGG+AGG | + | chr5.4:24134123-24134142 | MS.gene80262:intron | 50.0% | |
| TCTGGGGAGGGTCTTTATGA+AGG | + | chr5.4:24135078-24135097 | MS.gene80262:CDS | 50.0% | |
| TGGAAGTAGTGCCTCCACAA+GGG | - | chr5.4:24134137-24134156 | None:intergenic | 50.0% | |
| TTCATAAAGACCCTCCCCAG+AGG | - | chr5.4:24135079-24135098 | None:intergenic | 50.0% | |
| ! | ACAAGTGCTCTGGATGTACC+TGG | - | chr5.4:24135052-24135071 | None:intergenic | 50.0% |
| ! | AGTGTCGCTGTCTAAGAGAG+TGG | - | chr5.4:24134949-24134968 | None:intergenic | 50.0% |
| ! | TTCACTGTTTGGGATGTCGG+AGG | + | chr5.4:24133983-24134002 | MS.gene80262:CDS | 50.0% |
| AGAGTGGAGACCCAGCTTGT+CGG | - | chr5.4:24134933-24134952 | None:intergenic | 55.0% | |
| ATAAAGACCCTCCCCAGAGG+TGG | - | chr5.4:24135076-24135095 | None:intergenic | 55.0% | |
| CTGGAAGTAGTGCCTCCACA+AGG | - | chr5.4:24134138-24134157 | None:intergenic | 55.0% | |
| ! | AGAGCACTTGTGCCACCTCT+GGG | + | chr5.4:24135061-24135080 | MS.gene80262:CDS | 55.0% |
| !! | ATGGTTGGTCTCGATGCAGC+TGG | + | chr5.4:24133102-24133121 | MS.gene80262:CDS | 55.0% |
| ATAGCTGGAGCACGGAAGGC+TGG | - | chr5.4:24135653-24135672 | None:intergenic | 60.0% | |
| CAGAGGTGGCACAAGTGCTC+TGG | - | chr5.4:24135062-24135081 | None:intergenic | 60.0% | |
| GAGCACTTGTGCCACCTCTG+GGG | + | chr5.4:24135062-24135081 | MS.gene80262:CDS | 60.0% | |
| ! | ACTTGTGCCACCTCTGGGGA+GGG | + | chr5.4:24135066-24135085 | MS.gene80262:CDS | 60.0% |
| ! | CAGAGCACTTGTGCCACCTC+TGG | + | chr5.4:24135060-24135079 | MS.gene80262:CDS | 60.0% |
| ! | TGTTTGGGATGTCGGAGGCC+AGG | + | chr5.4:24133988-24134007 | MS.gene80262:CDS | 60.0% |
| GGATGTCGGAGGCCAGGACA+AGG | + | chr5.4:24133994-24134013 | MS.gene80262:CDS | 65.0% | |
| ! | CACTTGTGCCACCTCTGGGG+AGG | + | chr5.4:24135065-24135084 | MS.gene80262:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 24133039 | 24135750 | 24133039 | ID=MS.gene80262 |
| chr5.4 | mRNA | 24133039 | 24135750 | 24133039 | ID=MS.gene80262.t1;Parent=MS.gene80262 |
| chr5.4 | exon | 24133039 | 24133186 | 24133039 | ID=MS.gene80262.t1.exon1;Parent=MS.gene80262.t1 |
| chr5.4 | CDS | 24133039 | 24133186 | 24133039 | ID=cds.MS.gene80262.t1;Parent=MS.gene80262.t1 |
| chr5.4 | exon | 24133945 | 24134015 | 24133945 | ID=MS.gene80262.t1.exon2;Parent=MS.gene80262.t1 |
| chr5.4 | CDS | 24133945 | 24134015 | 24133945 | ID=cds.MS.gene80262.t1;Parent=MS.gene80262.t1 |
| chr5.4 | exon | 24134128 | 24134247 | 24134128 | ID=MS.gene80262.t1.exon3;Parent=MS.gene80262.t1 |
| chr5.4 | CDS | 24134128 | 24134247 | 24134128 | ID=cds.MS.gene80262.t1;Parent=MS.gene80262.t1 |
| chr5.4 | exon | 24134851 | 24134969 | 24134851 | ID=MS.gene80262.t1.exon4;Parent=MS.gene80262.t1 |
| chr5.4 | CDS | 24134851 | 24134969 | 24134851 | ID=cds.MS.gene80262.t1;Parent=MS.gene80262.t1 |
| chr5.4 | exon | 24135053 | 24135134 | 24135053 | ID=MS.gene80262.t1.exon5;Parent=MS.gene80262.t1 |
| chr5.4 | CDS | 24135053 | 24135134 | 24135053 | ID=cds.MS.gene80262.t1;Parent=MS.gene80262.t1 |
| chr5.4 | exon | 24135745 | 24135750 | 24135745 | ID=MS.gene80262.t1.exon6;Parent=MS.gene80262.t1 |
| chr5.4 | CDS | 24135745 | 24135750 | 24135745 | ID=cds.MS.gene80262.t1;Parent=MS.gene80262.t1 |
| Gene Sequence |
| Protein sequence |
