AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01845

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01845.t1 MTR_2g022200 99.024 205 2 0 1 205 1 205 3.20e-148 410
MS.gene01845.t1 MTR_4g073560 96.203 79 3 0 117 195 118 196 5.66e-47 153
MS.gene01845.t1 MTR_8g077540 40.964 166 90 2 18 182 17 175 4.40e-38 130
MS.gene01845.t1 MTR_8g077540 40.964 166 90 2 18 182 43 201 1.17e-37 130
MS.gene01845.t1 MTR_7g109960 34.857 175 103 2 8 180 8 173 1.82e-36 126
MS.gene01845.t1 MTR_5g034130 34.857 175 103 2 8 180 8 173 1.82e-36 126
MS.gene01845.t1 MTR_5g034125 34.857 175 103 2 8 180 8 173 1.82e-36 126
MS.gene01845.t1 MTR_1g086480 34.857 175 103 2 8 180 8 173 1.88e-36 126
MS.gene01845.t1 MTR_6g005820 34.857 175 103 2 8 180 8 173 1.97e-36 125
MS.gene01845.t1 MTR_5g016540 34.682 173 102 2 10 180 10 173 2.95e-36 125
MS.gene01845.t1 MTR_4g128910 35.359 181 104 2 8 185 8 178 2.05e-34 120
MS.gene01845.t1 MTR_1g076550 34.973 183 106 2 1 180 1 173 3.59e-32 115
MS.gene01845.t1 MTR_5g015370 32.787 183 110 2 7 182 2 178 1.52e-30 110
MS.gene01845.t1 MTR_4g026950 32.727 165 105 1 18 182 1 159 2.80e-29 107
MS.gene01845.t1 MTR_4g077640 31.694 183 114 2 8 188 8 181 1.18e-28 106
MS.gene01845.t1 MTR_5g007810 31.351 185 116 2 8 190 8 183 2.29e-28 105
MS.gene01845.t1 MTR_5g078090 32.240 183 111 2 7 182 2 178 2.49e-28 105
MS.gene01845.t1 MTR_5g007820 30.159 189 117 3 8 191 8 186 1.60e-26 100
MS.gene01845.t1 MTR_7g112090 37.584 149 81 3 7 155 15 151 1.85e-23 92.8
MS.gene01845.t1 MTR_2g034640 38.255 149 80 3 7 155 15 151 7.97e-23 91.3
MS.gene01845.t1 MTR_4g121860 38.255 149 80 3 7 155 15 151 8.63e-22 88.6
MS.gene01845.t1 MTR_8g077540 37.500 104 58 1 18 121 17 113 6.87e-19 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01845.t1 AT5G52210 79.293 198 41 0 1 198 1 198 2.31e-115 327
MS.gene01845.t1 AT5G52210 79.293 198 41 0 1 198 1 198 2.31e-115 327
MS.gene01845.t1 AT5G14670 34.857 175 103 2 8 180 8 173 1.91e-36 126
MS.gene01845.t1 AT5G14670 34.857 175 103 2 8 180 8 173 1.91e-36 126
MS.gene01845.t1 AT2G47170 34.857 175 103 2 8 180 8 173 2.10e-36 125
MS.gene01845.t1 AT2G47170 34.857 175 103 2 8 180 8 173 2.10e-36 125
MS.gene01845.t1 AT2G47170 34.857 175 103 2 8 180 8 173 2.10e-36 125
MS.gene01845.t1 AT1G70490 34.857 175 103 2 8 180 8 173 2.25e-36 125
MS.gene01845.t1 AT1G70490 34.857 175 103 2 8 180 8 173 2.25e-36 125
MS.gene01845.t1 AT1G70490 34.857 175 103 2 8 180 8 173 2.25e-36 125
MS.gene01845.t1 AT1G70490 34.857 175 103 2 8 180 8 173 2.25e-36 125
MS.gene01845.t1 AT1G70490 34.857 175 103 2 8 180 8 173 2.25e-36 125
MS.gene01845.t1 AT1G70490 34.857 175 103 2 8 180 8 173 2.25e-36 125
MS.gene01845.t1 AT1G23490 34.857 175 103 2 8 180 8 173 2.25e-36 125
MS.gene01845.t1 AT1G70490 34.857 175 103 2 8 180 8 173 2.25e-36 125
MS.gene01845.t1 AT1G10630 34.857 175 103 2 8 180 8 173 2.27e-36 125
MS.gene01845.t1 AT1G10630 34.857 175 103 2 8 180 8 173 2.27e-36 125
MS.gene01845.t1 AT5G14670 34.857 175 103 2 8 180 8 173 2.40e-36 126
MS.gene01845.t1 AT3G62290 34.857 175 103 2 8 180 8 173 2.47e-36 125
MS.gene01845.t1 AT3G62290 34.857 175 103 2 8 180 8 173 2.47e-36 125
MS.gene01845.t1 AT3G62290 34.857 175 103 2 8 180 8 173 2.47e-36 125
MS.gene01845.t1 AT2G18390 39.759 166 92 2 18 182 17 175 4.26e-36 125
MS.gene01845.t1 AT2G15310 35.484 186 105 3 15 194 15 191 3.44e-35 123
MS.gene01845.t1 AT2G24765 35.106 188 102 3 1 185 8 178 7.92e-34 119
MS.gene01845.t1 AT3G22950 34.054 185 109 2 1 182 1 175 5.09e-32 114
MS.gene01845.t1 AT3G22950 34.054 185 109 2 1 182 1 175 5.09e-32 114
MS.gene01845.t1 AT5G67560 33.333 189 113 2 7 188 2 184 2.68e-31 113
MS.gene01845.t1 AT3G49870 34.503 171 106 1 12 182 14 178 3.51e-31 112
MS.gene01845.t1 AT3G49870 34.783 161 99 1 22 182 5 159 1.69e-29 107
MS.gene01845.t1 AT5G37680 33.333 183 109 2 7 182 2 178 6.13e-29 107
MS.gene01845.t1 AT3G03120 31.000 200 120 3 8 205 8 191 1.22e-28 106
MS.gene01845.t1 AT5G17060 31.148 183 115 2 8 188 8 181 4.59e-28 104
MS.gene01845.t1 AT5G17060 31.148 183 115 2 8 188 8 181 4.59e-28 104
MS.gene01845.t1 AT2G24765 37.681 138 66 3 1 135 8 128 2.26e-25 96.3
MS.gene01845.t1 AT1G02440 29.032 186 113 5 12 186 12 189 2.56e-25 97.8
MS.gene01845.t1 AT5G37680 35.878 131 84 0 52 182 1 131 2.42e-24 93.6
MS.gene01845.t1 AT3G49860 30.120 166 110 1 17 182 11 170 4.50e-24 94.0
MS.gene01845.t1 AT1G02430 27.957 186 115 5 12 186 12 189 6.04e-23 91.7
MS.gene01845.t1 AT4G02080 38.255 149 80 3 7 155 15 151 6.90e-23 91.7
MS.gene01845.t1 AT3G62560 39.041 146 77 3 7 152 15 148 8.26e-23 91.3
MS.gene01845.t1 AT1G56330 38.255 149 80 3 7 155 15 151 3.27e-22 89.7
MS.gene01845.t1 AT3G03120 33.333 132 77 2 8 137 8 130 9.21e-22 87.0
MS.gene01845.t1 AT1G09180 36.538 156 91 3 1 155 3 151 9.22e-21 85.9
MS.gene01845.t1 AT1G02430 27.564 156 98 4 12 160 12 159 2.14e-18 79.0

Find 48 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGTTGCAGGCTGGGTATC+AGG 0.269545 2.2:+63312036 MS.gene01845:intron
CAAATAGAAAACTTGTGTTC+TGG 0.296718 2.2:+63310362 MS.gene01845:CDS
AGCTTGGTCTTCGCTCAATC+TGG 0.301799 2.2:+63311068 MS.gene01845:intron
TCTTCAGATGATACTGCTTC+AGG 0.332255 2.2:-63311526 None:intergenic
CCAACTGTGGGATTGAATAT+TGG 0.365635 2.2:+63310325 MS.gene01845:CDS
AAATAGAAAACTTGTGTTCT+GGG 0.369959 2.2:+63310363 MS.gene01845:CDS
TTTCGTTAATTTATGGACTT+TGG 0.423498 2.2:+63310070 MS.gene01845:CDS
GTTCTGGGACCTGGGAGGTC+AGG 0.434907 2.2:+63310378 MS.gene01845:CDS
AAAACTTGTGTTCTGGGACC+TGG 0.435281 2.2:+63310369 MS.gene01845:CDS
GACTGAAATGTTGAGATTGC+GGG 0.443386 2.2:+63312103 MS.gene01845:CDS
AAACTTGTGTTCTGGGACCT+GGG 0.451169 2.2:+63310370 MS.gene01845:CDS
CGGGCAGGTGCAATGGGTCC+AGG 0.467778 2.2:+63312122 MS.gene01845:CDS
GTATCTAGATTTAAAGAAGC+TGG 0.477589 2.2:+63311558 MS.gene01845:CDS
GAGATTGCGGGCAGGTGCAA+TGG 0.494160 2.2:+63312115 MS.gene01845:CDS
AGATTGCGGGCAGGTGCAAT+GGG 0.499243 2.2:+63312116 MS.gene01845:CDS
CGGGACCTCTAGGCAGGACC+TGG 0.509029 2.2:-63312140 None:intergenic
ACAGTTGGAACAATTCGATC+AGG 0.520181 2.2:-63310310 None:intergenic
TCAGTGTACACGAACGTAGA+AGG 0.523236 2.2:+63310280 MS.gene01845:CDS
GCTTGGTCTTCGCTCAATCT+GGG 0.527000 2.2:+63311069 MS.gene01845:intron
CCAATATTCAATCCCACAGT+TGG 0.529873 2.2:-63310325 None:intergenic
TGATGTCGGGACCTCTAGGC+AGG 0.530431 2.2:-63312146 None:intergenic
GAAGCCGTGTCAGCATATGA+TGG 0.535295 2.2:+63311601 MS.gene01845:CDS
GATTGACAAGGCTGGCAAAA+CGG 0.536788 2.2:+63310137 MS.gene01845:CDS
ATGTTGCAGGCTGGGTATCA+GGG 0.536907 2.2:+63312037 MS.gene01845:intron
TTGTTTGCTAATATCAAAAG+AGG 0.540730 2.2:-63311360 None:intergenic
GAAGATGCAAAGTCTGCACT+TGG 0.546377 2.2:+63311157 MS.gene01845:CDS
TGTTTGCTAATATCAAAAGA+GGG 0.557064 2.2:-63311359 None:intergenic
GATCGAATTGTTCCAACTGT+GGG 0.562879 2.2:+63310313 MS.gene01845:CDS
CTTTGCATCTTCAAATCGTG+AGG 0.580336 2.2:-63311146 None:intergenic
GGACTGAAATGTTGAGATTG+CGG 0.582621 2.2:+63312102 MS.gene01845:CDS
TGATCGAATTGTTCCAACTG+TGG 0.589660 2.2:+63310312 MS.gene01845:CDS
AGAAAAGGTGCTTCGACATG+AGG 0.590643 2.2:+63311323 MS.gene01845:intron
TGGGTCCAGGTCCTGCCTAG+AGG 0.592022 2.2:+63312135 MS.gene01845:CDS
AAGCCGTGTCAGCATATGAT+GGG 0.595990 2.2:+63311602 MS.gene01845:CDS
GGAAAGTGCAGAATGGCTTG+TGG 0.602944 2.2:+63312058 MS.gene01845:CDS
TTTCTGATACCTGACCTCCC+AGG 0.608879 2.2:-63310387 None:intergenic
TATCATCTGAAGAACTAGCT+CGG 0.614679 2.2:+63311536 MS.gene01845:CDS
CTGGGAGAAATATTATGAAG+AGG 0.615056 2.2:+63311087 MS.gene01845:CDS
TTACCCATCATATGCTGACA+CGG 0.632005 2.2:-63311605 None:intergenic
AAGTGATGGAGAGAAGCAAG+AGG 0.637928 2.2:+63312081 MS.gene01845:CDS
CTTCGACATGAGGATCTCAA+AGG 0.639558 2.2:+63311333 MS.gene01845:CDS
GAAATGTTGAGATTGCGGGC+AGG 0.639681 2.2:+63312107 MS.gene01845:CDS
GTATCAGGGAAAGTGCAGAA+TGG 0.644578 2.2:+63312051 MS.gene01845:CDS
GTTGGAACAATTCGATCAGG+AGG 0.646916 2.2:-63310307 None:intergenic
AGAATGGCTTGTGGAAGTGA+TGG 0.647620 2.2:+63312067 MS.gene01845:CDS
TTTGCATCTTCAAATCGTGA+GGG 0.655285 2.2:-63311145 None:intergenic
GTTTGCTAATATCAAAAGAG+GGG 0.667030 2.2:-63311358 None:intergenic
CTTGTGTTCTGGGACCTGGG+AGG 0.764762 2.2:+63310373 MS.gene01845:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCTATAATTATGATATT+TGG + chr2.2:63310435-63310454 MS.gene01845:intron 10.0%
!!! TTGTTATTATTAATTAATGA+GGG + chr2.2:63311815-63311834 MS.gene01845:intron 10.0%
!!! TTTGTTATTATTAATTAATG+AGG + chr2.2:63311814-63311833 MS.gene01845:intron 10.0%
!! AATCATTATTGAAAATGAAA+TGG - chr2.2:63311680-63311699 None:intergenic 15.0%
!! AGTAGTTTCTTAAAAAATAT+GGG - chr2.2:63310179-63310198 None:intergenic 15.0%
!! CTTATCTTATTATATGAAAA+GGG - chr2.2:63311022-63311041 None:intergenic 15.0%
!! TAAGAAAAAAATAACCATTA+AGG + chr2.2:63311713-63311732 MS.gene01845:intron 15.0%
!! TCTTATCTTATTATATGAAA+AGG - chr2.2:63311023-63311042 None:intergenic 15.0%
!! AACATAAAAAAATAAGACCT+CGG - chr2.2:63310591-63310610 None:intergenic 20.0%
!! ACTAAATGTATACTTCTTTA+AGG + chr2.2:63311212-63311231 MS.gene01845:intron 20.0%
!! ATTATTAATTAATGAGGGAT+AGG + chr2.2:63311820-63311839 MS.gene01845:intron 20.0%
!! CAGTAGTTTCTTAAAAAATA+TGG - chr2.2:63310180-63310199 None:intergenic 20.0%
!! GAAATGTAATACAAAGAATT+AGG - chr2.2:63311991-63312010 None:intergenic 20.0%
!! TATTGAAAATGAAATGGTAA+TGG - chr2.2:63311674-63311693 None:intergenic 20.0%
!!! GATGAATTGTTAATTTGATT+TGG + chr2.2:63310457-63310476 MS.gene01845:intron 20.0%
! AAATAGAAAACTTGTGTTCT+GGG + chr2.2:63310363-63310382 MS.gene01845:CDS 25.0%
! AATTCACTCAAATGATTAGT+GGG - chr2.2:63311891-63311910 None:intergenic 25.0%
! ACATAAAAAAATAAGACCTC+GGG - chr2.2:63310590-63310609 None:intergenic 25.0%
! ACTAATCATTTGAGTGAATT+GGG + chr2.2:63311891-63311910 MS.gene01845:intron 25.0%
! TACTTCATTATGTACCTTAA+TGG - chr2.2:63311730-63311749 None:intergenic 25.0%
! TGCATAAGAACTATGTTATT+TGG + chr2.2:63310784-63310803 MS.gene01845:intron 25.0%
! TTGCCTATAATTACAAAGTA+GGG + chr2.2:63311857-63311876 MS.gene01845:intron 25.0%
! TTTCGTTAATTTATGGACTT+TGG + chr2.2:63310070-63310089 MS.gene01845:CDS 25.0%
!! AGGAAACCAAACATTTTATA+GGG - chr2.2:63311414-63311433 None:intergenic 25.0%
!! GATATGTATATGTTACTTGA+GGG + chr2.2:63311773-63311792 MS.gene01845:intron 25.0%
!! TGATATGTATATGTTACTTG+AGG + chr2.2:63311772-63311791 MS.gene01845:intron 25.0%
!! TGTTTGCTAATATCAAAAGA+GGG - chr2.2:63311362-63311381 None:intergenic 25.0%
!! TTGTTTGCTAATATCAAAAG+AGG - chr2.2:63311363-63311382 None:intergenic 25.0%
AAAAACACACTAAGCCAATT+AGG - chr2.2:63310704-63310723 None:intergenic 30.0%
AAGGAAAAAGTGATATGAAC+TGG - chr2.2:63312013-63312032 None:intergenic 30.0%
AATCAAATGTTCGTGTATAC+TGG - chr2.2:63310879-63310898 None:intergenic 30.0%
AATTACAAAGTAGGGTTGAA+AGG + chr2.2:63311865-63311884 MS.gene01845:intron 30.0%
ACAATGACACAGAATTTCAA+GGG - chr2.2:63311945-63311964 None:intergenic 30.0%
ATAGCAAGATCAGTATAAAG+AGG - chr2.2:63310991-63311010 None:intergenic 30.0%
CAAATAGAAAACTTGTGTTC+TGG + chr2.2:63310362-63310381 MS.gene01845:CDS 30.0%
CAACCCTACTTTGTAATTAT+AGG - chr2.2:63311863-63311882 None:intergenic 30.0%
CAATTCACTCAAATGATTAG+TGG - chr2.2:63311892-63311911 None:intergenic 30.0%
CACTAATCATTTGAGTGAAT+TGG + chr2.2:63311890-63311909 MS.gene01845:intron 30.0%
CATAAAAAGGGTGAAATAGA+TGG - chr2.2:63310811-63310830 None:intergenic 30.0%
CTAATCATTTGAGTGAATTG+GGG + chr2.2:63311892-63311911 MS.gene01845:intron 30.0%
GTATCTAGATTTAAAGAAGC+TGG + chr2.2:63311558-63311577 MS.gene01845:CDS 30.0%
GTTGCCTATAATTACAAAGT+AGG + chr2.2:63311856-63311875 MS.gene01845:intron 30.0%
TAGCAAGATCAGTATAAAGA+GGG - chr2.2:63310990-63311009 None:intergenic 30.0%
TCAAACTTCAGCCATAAAAA+GGG - chr2.2:63310823-63310842 None:intergenic 30.0%
TTCAAACTTCAGCCATAAAA+AGG - chr2.2:63310824-63310843 None:intergenic 30.0%
! CATCTATTTCACCCTTTTTA+TGG + chr2.2:63310809-63310828 MS.gene01845:intron 30.0%
! GAGGAAACCAAACATTTTAT+AGG - chr2.2:63311415-63311434 None:intergenic 30.0%
! GTTTGCTAATATCAAAAGAG+GGG - chr2.2:63311361-63311380 None:intergenic 30.0%
! TGCTCTCTGAAAAATTCTTT+GGG + chr2.2:63310662-63310681 MS.gene01845:intron 30.0%
! TGTATACTTCTTTAAGGAGT+TGG + chr2.2:63311218-63311237 MS.gene01845:intron 30.0%
! TTGCTCTCTGAAAAATTCTT+TGG + chr2.2:63310661-63310680 MS.gene01845:intron 30.0%
!! TTCATTGACTCTAGCTTTAT+GGG + chr2.2:63310493-63310512 MS.gene01845:intron 30.0%
AAAATAATCCCCTAGACTAC+AGG - chr2.2:63311968-63311987 None:intergenic 35.0%
AAATAGGATCACAACAAACG+AGG - chr2.2:63311434-63311453 None:intergenic 35.0%
ACACTTGTAGTATCAGGAAT+AGG + chr2.2:63310933-63310952 MS.gene01845:intron 35.0%
ACTGATCTGTTTACCAGAAA+AGG + chr2.2:63311308-63311327 MS.gene01845:intron 35.0%
CTGAACATTCTTCTTATTGC+AGG + chr2.2:63311498-63311517 MS.gene01845:intron 35.0%
CTGGGAGAAATATTATGAAG+AGG + chr2.2:63311087-63311106 MS.gene01845:CDS 35.0%
GACAATGACACAGAATTTCA+AGG - chr2.2:63311946-63311965 None:intergenic 35.0%
GTGTTAATACACACCAAAGA+GGG - chr2.2:63311463-63311482 None:intergenic 35.0%
TATCATCTGAAGAACTAGCT+CGG + chr2.2:63311536-63311555 MS.gene01845:CDS 35.0%
TGTGTTAATACACACCAAAG+AGG - chr2.2:63311464-63311483 None:intergenic 35.0%
TTTGCATCTTCAAATCGTGA+GGG - chr2.2:63311148-63311167 None:intergenic 35.0%
! AACCAAACATTTTATAGGGC+AGG - chr2.2:63311410-63311429 None:intergenic 35.0%
! ACCAAACATTTTATAGGGCA+GGG - chr2.2:63311409-63311428 None:intergenic 35.0%
! AGCTTCGTGTACTCATTTTA+GGG + chr2.2:63310115-63310134 MS.gene01845:CDS 35.0%
! CTCTGAAAAATTCTTTGGGA+AGG + chr2.2:63310666-63310685 MS.gene01845:intron 35.0%
! TTTTTCCTTTGACATGTTGC+AGG + chr2.2:63312024-63312043 MS.gene01845:intron 35.0%
!! AAATGGTAATGGATCATCAC+AGG - chr2.2:63311663-63311682 None:intergenic 35.0%
!! ACTCATTTTAGGGATTGACA+AGG + chr2.2:63310125-63310144 MS.gene01845:CDS 35.0%
!! GTTCATTGACTCTAGCTTTA+TGG + chr2.2:63310492-63310511 MS.gene01845:intron 35.0%
AACTACTGAACTTTGTCTCG+TGG + chr2.2:63310192-63310211 MS.gene01845:intron 40.0%
ACAGTTGGAACAATTCGATC+AGG - chr2.2:63310313-63310332 None:intergenic 40.0%
AGATCAGTATAAAGAGGGTC+AGG - chr2.2:63310985-63311004 None:intergenic 40.0%
CACTAAGCCAATTAGGTTAG+TGG - chr2.2:63310697-63310716 None:intergenic 40.0%
CAGGAATAGGATGCATCATT+TGG + chr2.2:63310946-63310965 MS.gene01845:intron 40.0%
CCAAAGAGGGCGAAAAAAAT+AGG - chr2.2:63311450-63311469 None:intergenic 40.0%
CCAACTGTGGGATTGAATAT+TGG + chr2.2:63310325-63310344 MS.gene01845:CDS 40.0%
CCAATATTCAATCCCACAGT+TGG - chr2.2:63310328-63310347 None:intergenic 40.0%
CTTTGCATCTTCAAATCGTG+AGG - chr2.2:63311149-63311168 None:intergenic 40.0%
GACTGAAATGTTGAGATTGC+GGG + chr2.2:63312103-63312122 MS.gene01845:CDS 40.0%
GATCGAATTGTTCCAACTGT+GGG + chr2.2:63310313-63310332 MS.gene01845:CDS 40.0%
GGACTGAAATGTTGAGATTG+CGG + chr2.2:63312102-63312121 MS.gene01845:CDS 40.0%
GGTGTGTATTAACACAGTGA+TGG + chr2.2:63311468-63311487 MS.gene01845:intron 40.0%
TCCCTGCCCTATAAAATGTT+TGG + chr2.2:63311405-63311424 MS.gene01845:intron 40.0%
TCTACATTACATAGTTCCCG+AGG + chr2.2:63310571-63310590 MS.gene01845:intron 40.0%
TCTTCAGATGATACTGCTTC+AGG - chr2.2:63311529-63311548 None:intergenic 40.0%
TGATCGAATTGTTCCAACTG+TGG + chr2.2:63310312-63310331 MS.gene01845:CDS 40.0%
TGTCATTGTCCTGTAGTCTA+GGG + chr2.2:63311956-63311975 MS.gene01845:intron 40.0%
TTACCCATCATATGCTGACA+CGG - chr2.2:63311608-63311627 None:intergenic 40.0%
TTGAGTGAATTGGGGTCTTT+GGG + chr2.2:63311900-63311919 MS.gene01845:intron 40.0%
TTTGAGTGAATTGGGGTCTT+TGG + chr2.2:63311899-63311918 MS.gene01845:intron 40.0%
! GAGCTTCGTGTACTCATTTT+AGG + chr2.2:63310114-63310133 MS.gene01845:CDS 40.0%
!! ATTTTAGGGATTGACAAGGC+TGG + chr2.2:63310129-63310148 MS.gene01845:CDS 40.0%
!!! CCTATTTTTTTCGCCCTCTT+TGG + chr2.2:63311447-63311466 MS.gene01845:intron 40.0%
AAGCCGTGTCAGCATATGAT+GGG + chr2.2:63311602-63311621 MS.gene01845:CDS 45.0%
AATTGGGGTCTTTGGGCATT+GGG + chr2.2:63311907-63311926 MS.gene01845:intron 45.0%
AATTTCCCCGCTTATCAGCT+TGG + chr2.2:63311052-63311071 MS.gene01845:intron 45.0%
CTTCGACATGAGGATCTCAA+AGG + chr2.2:63311333-63311352 MS.gene01845:CDS 45.0%
GAAGATGCAAAGTCTGCACT+TGG + chr2.2:63311157-63311176 MS.gene01845:CDS 45.0%
GATTGACAAGGCTGGCAAAA+CGG + chr2.2:63310137-63310156 MS.gene01845:CDS 45.0%
GGCTACTCCACTAACCTAAT+TGG + chr2.2:63310687-63310706 MS.gene01845:intron 45.0%
GTCATTGTCCTGTAGTCTAG+GGG + chr2.2:63311957-63311976 MS.gene01845:intron 45.0%
GTTGGAACAATTCGATCAGG+AGG - chr2.2:63310310-63310329 None:intergenic 45.0%
TAAAGAGGGTCAGGTATGAG+AGG - chr2.2:63310976-63310995 None:intergenic 45.0%
TCAGTGTACACGAACGTAGA+AGG + chr2.2:63310280-63310299 MS.gene01845:CDS 45.0%
TCCTGATACTACAAGTGTGC+AGG - chr2.2:63310931-63310950 None:intergenic 45.0%
! AAGTGATGGAGAGAAGCAAG+AGG + chr2.2:63312081-63312100 MS.gene01845:CDS 45.0%
! AGAATGGCTTGTGGAAGTGA+TGG + chr2.2:63312067-63312086 MS.gene01845:CDS 45.0%
! GTATCAGGGAAAGTGCAGAA+TGG + chr2.2:63312051-63312070 MS.gene01845:CDS 45.0%
! GTGTCATTGTCCTGTAGTCT+AGG + chr2.2:63311955-63311974 MS.gene01845:intron 45.0%
!! AAAACTTGTGTTCTGGGACC+TGG + chr2.2:63310369-63310388 MS.gene01845:CDS 45.0%
!! AAACTTGTGTTCTGGGACCT+GGG + chr2.2:63310370-63310389 MS.gene01845:CDS 45.0%
!! AGAAAAGGTGCTTCGACATG+AGG + chr2.2:63311323-63311342 MS.gene01845:intron 45.0%
!! GCATATGATGGGTAAGTGAG+AGG + chr2.2:63311613-63311632 MS.gene01845:intron 45.0%
!! TCATGTCGAAGCACCTTTTC+TGG - chr2.2:63311324-63311343 None:intergenic 45.0%
!!! TGTTTTTTATTTTAAATTAT+AGG + chr2.2:63310717-63310736 MS.gene01845:intron 5.0%
ATGTTGCAGGCTGGGTATCA+GGG + chr2.2:63312037-63312056 MS.gene01845:intron 50.0%
CCTTTGACATGTTGCAGGCT+GGG + chr2.2:63312029-63312048 MS.gene01845:intron 50.0%
CGAAGACCAAGCTGATAAGC+GGG - chr2.2:63311061-63311080 None:intergenic 50.0%
GAAATGTTGAGATTGCGGGC+AGG + chr2.2:63312107-63312126 MS.gene01845:CDS 50.0%
GAAGACCAAGCTGATAAGCG+GGG - chr2.2:63311060-63311079 None:intergenic 50.0%
GAAGCCGTGTCAGCATATGA+TGG + chr2.2:63311601-63311620 MS.gene01845:CDS 50.0%
GAATTGGGGTCTTTGGGCAT+TGG + chr2.2:63311906-63311925 MS.gene01845:intron 50.0%
GCCTGCACACTTGTAGTATC+AGG + chr2.2:63310927-63310946 MS.gene01845:intron 50.0%
GCGAAGACCAAGCTGATAAG+CGG - chr2.2:63311062-63311081 None:intergenic 50.0%
TCCTTTGACATGTTGCAGGC+TGG + chr2.2:63312028-63312047 MS.gene01845:intron 50.0%
TTTCTGATACCTGACCTCCC+AGG - chr2.2:63310390-63310409 None:intergenic 50.0%
! AGCTTGGTCTTCGCTCAATC+TGG + chr2.2:63311068-63311087 MS.gene01845:intron 50.0%
! GCTTGGTCTTCGCTCAATCT+GGG + chr2.2:63311069-63311088 MS.gene01845:intron 50.0%
! GGAAAGTGCAGAATGGCTTG+TGG + chr2.2:63312058-63312077 MS.gene01845:CDS 50.0%
AGATTGCGGGCAGGTGCAAT+GGG + chr2.2:63312116-63312135 MS.gene01845:CDS 55.0%
CATGTTGCAGGCTGGGTATC+AGG + chr2.2:63312036-63312055 MS.gene01845:intron 55.0%
CCCAGCCTGCAACATGTCAA+AGG - chr2.2:63312032-63312051 None:intergenic 55.0%
GAGATTGCGGGCAGGTGCAA+TGG + chr2.2:63312115-63312134 MS.gene01845:CDS 60.0%
!! CTTGTGTTCTGGGACCTGGG+AGG + chr2.2:63310373-63310392 MS.gene01845:CDS 60.0%
!! GGGGTCTTTGGGCATTGGGA+GGG + chr2.2:63311911-63311930 MS.gene01845:intron 60.0%
!! GGGTCTTTGGGCATTGGGAG+GGG + chr2.2:63311912-63311931 MS.gene01845:intron 60.0%
!! GGTCTTTGGGCATTGGGAGG+GGG + chr2.2:63311913-63311932 MS.gene01845:intron 60.0%
!! TGGGGTCTTTGGGCATTGGG+AGG + chr2.2:63311910-63311929 MS.gene01845:intron 60.0%
!! GTTCTGGGACCTGGGAGGTC+AGG + chr2.2:63310378-63310397 MS.gene01845:CDS 65.0%
CGGGCAGGTGCAATGGGTCC+AGG + chr2.2:63312122-63312141 MS.gene01845:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 63310066 63312154 63310066 ID=MS.gene01845
chr2.2 mRNA 63310066 63312154 63310066 ID=MS.gene01845.t1;Parent=MS.gene01845
chr2.2 exon 63310066 63310158 63310066 ID=MS.gene01845.t1.exon1;Parent=MS.gene01845.t1
chr2.2 CDS 63310066 63310158 63310066 ID=cds.MS.gene01845.t1;Parent=MS.gene01845.t1
chr2.2 exon 63310259 63310399 63310259 ID=MS.gene01845.t1.exon2;Parent=MS.gene01845.t1
chr2.2 CDS 63310259 63310399 63310259 ID=cds.MS.gene01845.t1;Parent=MS.gene01845.t1
chr2.2 exon 63311070 63311178 63311070 ID=MS.gene01845.t1.exon3;Parent=MS.gene01845.t1
chr2.2 CDS 63311070 63311178 63311070 ID=cds.MS.gene01845.t1;Parent=MS.gene01845.t1
chr2.2 exon 63311325 63311386 63311325 ID=MS.gene01845.t1.exon4;Parent=MS.gene01845.t1
chr2.2 CDS 63311325 63311386 63311325 ID=cds.MS.gene01845.t1;Parent=MS.gene01845.t1
chr2.2 exon 63311520 63311623 63311520 ID=MS.gene01845.t1.exon5;Parent=MS.gene01845.t1
chr2.2 CDS 63311520 63311623 63311520 ID=cds.MS.gene01845.t1;Parent=MS.gene01845.t1
chr2.2 exon 63312046 63312154 63312046 ID=MS.gene01845.t1.exon6;Parent=MS.gene01845.t1
chr2.2 CDS 63312046 63312154 63312046 ID=cds.MS.gene01845.t1;Parent=MS.gene01845.t1
Gene Sequence

>MS.gene01845

ATGTTTTCGTTAATTTATGGACTTTGGCAGTTCATGTTCAGCAAGTTAGAGCTTCGTGTACTCATTTTAGGGATTGACAAGGCTGGCAAAACGGTAATATATCTTTCAATCCCATATTTTTTAAGAAACTACTGAACTTTGTCTCGTGGCTCTGAGTTGTTTAATAATTGCTATATAATGAATAATTGTGTAGACTTTGCTTGAGAAGATAAAGTCAGTGTACACGAACGTAGAAGGTCTTCCTCCTGATCGAATTGTTCCAACTGTGGGATTGAATATTGGTCGAATTGAAGTTGCAAATAGAAAACTTGTGTTCTGGGACCTGGGAGGTCAGGTATCAGAAATAGATAGTCAATGCTTATCTTTGTAAATTCTATAATTATGATATTTGGATGAATTGTTAATTTGATTTGGCAAAGTAATTTTGTTCATTGACTCTAGCTTTATGGGCTGCTTGTCAAAATCATTTCATTCTCTAGAACTTCAATAGCTAATATAATAAACATCTACATTACATAGTTCCCGAGGTCTTATTTTTTTATGTTTCTTTATAAAGTTAAAATGCAATTAATTAATGAAAGAACTAGAATCTGTTTTGCTCTCTGAAAAATTCTTTGGGAAGGCTACTCCACTAACCTAATTGGCTTAGTGTGTTTTTTATTTTAAATTATAGGTTTGTTATTTTATCTTCAATGCTTAAGAACTGTTACTTTATATATGCATAAGAACTATGTTATTTGGACCATCTATTTCACCCTTTTTATGGCTGAAGTTTGAATTTACAAGAGATTTTGTGTTTACAAAATTAGTCCAGTATACACGAACATTTGATTCAGTACTTCATTTTTAACTGAAATGCAAGCCTGCACACTTGTAGTATCAGGAATAGGATGCATCATTTGGTGCACCTCTCATACCTGACCCTCTTTATACTGATCTTGCTATCACTATGTCCCTTTTCATATAATAAGATAAGATGTTAATTTAATTTCCCCGCTTATCAGCTTGGTCTTCGCTCAATCTGGGAGAAATATTATGAAGAGGCACACGCTGTTGTATTTGTTATAGATGCATCTTGTCCCTCACGATTTGAAGATGCAAAGTCTGCACTTGGTTAGTGAGACTTGATTTTAGTATTTGTAAATAACTAAATGTATACTTCTTTAAGGAGTTGGCTTGCAGTTGCAAGTTTGCAATAGTACTAGATATGTTGTAATTAAACAGCACAGTGATAATTTAATAACTGATCTGTTTACCAGAAAAGGTGCTTCGACATGAGGATCTCAAAGGAGCCCCTCTTTTGATATTAGCAAACAAGCAAGTGAGTGCAACTATTCACTCCCTGCCCTATAAAATGTTTGGTTTCCTCGTTTGTTGTGATCCTATTTTTTTCGCCCTCTTTGGTGTGTATTAACACAGTGATGGCTGCATGCTGAACATTCTTCTTATTGCAGGATCTTCCTGAAGCAGTATCATCTGAAGAACTAGCTCGGTATCTAGATTTAAAGAAGCTGGACGAAAGAGTCTACTTGTTTGAAGCCGTGTCAGCATATGATGGGTAAGTGAGAGGTTGTATAAACTTTTCAAATCTTAACCTGTGATGATCCATTACCATTTCATTTTCAATAATGATTGAGATATCTGCTGTAAGAAAAAAATAACCATTAAGGTACATAATGAAGTACTTTGCTGAATGAACTTTATTCTGATATGTATATGTTACTTGAGGGAATTAGTTAGTTAGTCTGTTTGTTATTATTAATTAATGAGGGATAGGAGAAATAAGACATGTTGCCTATAATTACAAAGTAGGGTTGAAAGGCCCACTAATCATTTGAGTGAATTGGGGTCTTTGGGCATTGGGAGGGGGCACAGACCCTTGAAATTCTGTGTCATTGTCCTGTAGTCTAGGGGATTATTTTCCTAATTCTTTGTATTACATTTCCAGTTCATATCACTTTTTCCTTTGACATGTTGCAGGCTGGGTATCAGGGAAAGTGCAGAATGGCTTGTGGAAGTGATGGAGAGAAGCAAGAGGACTGAAATGTTGAGATTGCGGGCAGGTGCAATGGGTCCAGGTCCTGCCTAG
Protein sequence

>MS.gene01845.t1

MFSLIYGLWQFMFSKLELRVLILGIDKAGKTTLLEKIKSVYTNVEGLPPDRIVPTVGLNIGRIEVANRKLVFWDLGGQLGLRSIWEKYYEEAHAVVFVIDASCPSRFEDAKSALEKVLRHEDLKGAPLLILANKQDLPEAVSSEELARYLDLKKLDERVYLFEAVSAYDGLGIRESAEWLVEVMERSKRTEMLRLRAGAMGPGPA