Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027534.t1 | XP_003613367.1 | 91.3 | 380 | 33 | 0 | 1 | 380 | 1 | 380 | 2.10E-204 | 721.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027534.t1 | G7K480 | 91.3 | 380 | 33 | 0 | 1 | 380 | 1 | 380 | 1.5e-204 | 721.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027534 | MS.gene78745 | PPI |
| MS.gene027535 | MS.gene027534 | PPI |
| MS.gene68297 | MS.gene027534 | PPI |
| MS.gene45115 | MS.gene027534 | PPI |
| MS.gene027534 | MS.gene027538 | PPI |
| MS.gene027534 | MS.gene027536 | PPI |
| MS.gene027534 | MS.gene45120 | PPI |
| MS.gene027534 | MS.gene45118 | PPI |
| MS.gene027534 | MS.gene027540 | PPI |
| MS.gene45117 | MS.gene027534 | PPI |
| MS.gene027534 | MS.gene042700 | PPI |
| MS.gene027534 | MS.gene45114 | PPI |
| MS.gene68295 | MS.gene027534 | PPI |
| MS.gene027534 | MS.gene027535 | PPI |
| MS.gene027534 | MS.gene027539 | PPI |
| MS.gene027534 | MS.gene45116 | PPI |
| MS.gene43935 | MS.gene027534 | PPI |
| MS.gene027534 | MS.gene027537 | PPI |
| MS.gene027544 | MS.gene027534 | PPI |
| MS.gene027534 | MS.gene68292 | PPI |
| MS.gene027537 | MS.gene027534 | PPI |
| MS.gene027534 | MS.gene68298 | PPI |
| MS.gene027534 | MS.gene43936 | PPI |
| MS.gene045965 | MS.gene027534 | PPI |
| MS.gene027534 | MS.gene45119 | PPI |
| MS.gene027534 | MS.gene43935 | PPI |
| MS.gene68296 | MS.gene027534 | PPI |
| MS.gene027534 | MS.gene027543 | PPI |
| MS.gene68293 | MS.gene027534 | PPI |
| MS.gene027534 | MS.gene053932 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027534.t1 | MTR_5g035760 | 91.316 | 380 | 33 | 0 | 1 | 380 | 1 | 380 | 0.0 | 725 |
| MS.gene027534.t1 | MTR_5g035690 | 76.289 | 388 | 82 | 2 | 1 | 380 | 1 | 386 | 0.0 | 598 |
| MS.gene027534.t1 | MTR_5g035665 | 76.781 | 379 | 85 | 2 | 1 | 378 | 1 | 377 | 0.0 | 592 |
| MS.gene027534.t1 | MTR_5g035750 | 73.265 | 389 | 93 | 3 | 1 | 380 | 1 | 387 | 0.0 | 569 |
| MS.gene027534.t1 | MTR_5g035670 | 74.016 | 381 | 98 | 1 | 1 | 380 | 1 | 381 | 0.0 | 566 |
| MS.gene027534.t1 | MTR_6g472110 | 48.000 | 400 | 187 | 8 | 1 | 380 | 1 | 399 | 1.22e-116 | 345 |
| MS.gene027534.t1 | MTR_6g016660 | 41.032 | 407 | 204 | 10 | 1 | 380 | 1 | 398 | 2.75e-90 | 277 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027534.t1 | AT1G13510 | 43.003 | 393 | 198 | 12 | 1 | 380 | 1 | 380 | 1.05e-91 | 280 |
| MS.gene027534.t1 | AT1G13540 | 44.162 | 394 | 193 | 12 | 1 | 380 | 1 | 381 | 2.77e-91 | 279 |
| MS.gene027534.t1 | AT1G13530 | 44.810 | 395 | 193 | 11 | 1 | 380 | 1 | 385 | 3.41e-91 | 279 |
| MS.gene027534.t1 | AT1G13480 | 41.960 | 398 | 202 | 11 | 1 | 380 | 1 | 387 | 8.51e-90 | 276 |
| MS.gene027534.t1 | AT1G13490 | 43.990 | 391 | 199 | 10 | 1 | 380 | 1 | 382 | 1.72e-88 | 272 |
| MS.gene027534.t1 | AT1G13520 | 42.065 | 397 | 203 | 12 | 1 | 380 | 1 | 387 | 9.68e-88 | 270 |
| MS.gene027534.t1 | AT1G13550 | 41.414 | 396 | 202 | 11 | 1 | 377 | 1 | 385 | 1.86e-85 | 265 |
| MS.gene027534.t1 | AT1G13470 | 41.985 | 393 | 200 | 12 | 1 | 380 | 1 | 378 | 9.59e-85 | 263 |
| MS.gene027534.t1 | AT1G13490 | 42.821 | 390 | 186 | 10 | 1 | 380 | 1 | 363 | 1.28e-81 | 254 |
| MS.gene027534.t1 | AT1G13500 | 43.544 | 395 | 199 | 13 | 1 | 380 | 1 | 386 | 1.95e-81 | 254 |
| MS.gene027534.t1 | AT1G61600 | 37.825 | 423 | 218 | 10 | 1 | 380 | 1 | 421 | 2.74e-80 | 252 |
Find 92 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCCTTGTGGTTTATTA+AGG | 0.154134 | 5.4:-40725318 | MS.gene027534:CDS |
| CACATCAAATTAGGAGTAAA+TGG | 0.158157 | 5.4:-40724673 | MS.gene027534:CDS |
| ATTACAAGATAACCGGAATT+TGG | 0.183054 | 5.4:+40726045 | None:intergenic |
| TTCCGGTTATCTTGTAATAT+TGG | 0.219881 | 5.4:-40726040 | MS.gene027534:CDS |
| CCTTCCTTCACAAACATAAA+AGG | 0.226109 | 5.4:+40725139 | None:intergenic |
| ACTAGTGTATGCTGCCATTT+TGG | 0.238420 | 5.4:-40725445 | MS.gene027534:CDS |
| AATCCGTTCTTGTTGGAAAA+TGG | 0.247239 | 5.4:-40725168 | MS.gene027534:CDS |
| TCAGACTCTCACATCAAATT+AGG | 0.256524 | 5.4:-40724682 | MS.gene027534:CDS |
| TTGAGTTTGGAAGTTGTTAA+AGG | 0.263829 | 5.4:-40724881 | MS.gene027534:CDS |
| GCTCAAACTTACTCTTTCTT+TGG | 0.280898 | 5.4:-40726009 | MS.gene027534:CDS |
| TAAAAGTGTTGGATTGAGTT+TGG | 0.284883 | 5.4:-40724894 | MS.gene027534:CDS |
| GAAATAAGCAAGAAACGTTT+TGG | 0.310305 | 5.4:-40725370 | MS.gene027534:CDS |
| AAAGTTGAAATCTGGTAGTT+TGG | 0.320204 | 5.4:+40725213 | None:intergenic |
| TTGAAGGAAAGGACGCTATT+CGG | 0.343227 | 5.4:-40724967 | MS.gene027534:CDS |
| AGAAAATGTCATGTTTCTTC+CGG | 0.357237 | 5.4:-40725899 | MS.gene027534:CDS |
| GTAACAAAACTTGAAGAGTT+TGG | 0.360783 | 5.4:-40724800 | MS.gene027534:CDS |
| TGTGGAAGGACATTGGTATT+GGG | 0.363284 | 5.4:-40725984 | MS.gene027534:CDS |
| CGTTCTGAATCCGTTCTTGT+TGG | 0.367660 | 5.4:-40725175 | MS.gene027534:CDS |
| TGAAGGAAAGGACGCTATTC+GGG | 0.374571 | 5.4:-40724966 | MS.gene027534:CDS |
| AATTCCTTGTGGTTTATTAA+GGG | 0.379479 | 5.4:-40725317 | MS.gene027534:CDS |
| GAAGGAAGGAATGACATTAA+AGG | 0.380941 | 5.4:-40725125 | MS.gene027534:CDS |
| CCTTTGAATTTAAGTTTGCT+TGG | 0.389776 | 5.4:+40725482 | None:intergenic |
| TCAGAACGATCATTGGATAA+TGG | 0.395582 | 5.4:+40725190 | None:intergenic |
| CCACCATCAGGTCCAAATTC+CGG | 0.397966 | 5.4:-40726057 | MS.gene027534:CDS |
| CTTACTCTTTCTTTGGTTTG+TGG | 0.402118 | 5.4:-40726002 | MS.gene027534:CDS |
| TCACTCAAATGGTAGTTTGT+AGG | 0.403643 | 5.4:+40725265 | None:intergenic |
| GATAATGGAAAGTTGAAATC+TGG | 0.412822 | 5.4:+40725205 | None:intergenic |
| ATCCAATATTACAAGATAAC+CGG | 0.416469 | 5.4:+40726038 | None:intergenic |
| TTGTGGAAGGACATTGGTAT+TGG | 0.416602 | 5.4:-40725985 | MS.gene027534:CDS |
| GAAAGGTTTGGATGGAATGC+TGG | 0.429285 | 5.4:-40724842 | MS.gene027534:CDS |
| AACGGATTCAGAACGATCAT+TGG | 0.436701 | 5.4:+40725183 | None:intergenic |
| AAATGGGAACAAGAAAGGTT+TGG | 0.437035 | 5.4:-40724854 | MS.gene027534:CDS |
| CTACCATTTGAGTGAAGCCT+TGG | 0.441404 | 5.4:-40725257 | MS.gene027534:CDS |
| AATGACATTAAAGGAACAAA+TGG | 0.441616 | 5.4:-40725116 | MS.gene027534:CDS |
| TATTCGGGATGAAAATAGAT+TGG | 0.446685 | 5.4:-40724951 | MS.gene027534:CDS |
| CTCTTTCTTTGGTTTGTGGA+AGG | 0.448953 | 5.4:-40725998 | MS.gene027534:CDS |
| AAGCCAAGGCTTCACTCAAA+TGG | 0.451311 | 5.4:+40725254 | None:intergenic |
| ACAGAAGTTGCTAAGGTTGA+AGG | 0.453239 | 5.4:-40724983 | MS.gene027534:CDS |
| AAGTTGTTAAAGGAATGAAA+TGG | 0.456844 | 5.4:-40724871 | MS.gene027534:CDS |
| AGTTGACGCTCGAGCAAAGA+TGG | 0.461286 | 5.4:-40725075 | MS.gene027534:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.466232 | 5.4:-40724944 | MS.gene027534:CDS |
| AGTTGTTAAAGGAATGAAAT+GGG | 0.466263 | 5.4:-40724870 | MS.gene027534:CDS |
| GGCTCCTTTCCATGTACAAA+AGG | 0.475308 | 5.4:-40726104 | MS.gene027534:CDS |
| GTTTGGATGGAATGCTGGGA+AGG | 0.480324 | 5.4:-40724837 | MS.gene027534:CDS |
| AGTGTTGAAGATAAAAGTGT+TGG | 0.485922 | 5.4:-40724905 | MS.gene027534:CDS |
| AGAAGGAAGGGGAAGAATCA+AGG | 0.491543 | 5.4:-40725835 | MS.gene027534:CDS |
| CTTTCAGATCCACCACCATC+AGG | 0.493605 | 5.4:-40726069 | MS.gene027534:CDS |
| TCCTTCTTATGACATAATAA+CGG | 0.494132 | 5.4:+40725851 | None:intergenic |
| ACCGTTATTATGTCATAAGA+AGG | 0.496211 | 5.4:-40725852 | MS.gene027534:CDS |
| GAATGAAATGGGAACAAGAA+AGG | 0.502774 | 5.4:-40724859 | MS.gene027534:CDS |
| GAATGCTGGGAAGGGAAGAC+AGG | 0.503274 | 5.4:-40724828 | MS.gene027534:CDS |
| ACATCAAATTAGGAGTAAAT+GGG | 0.504473 | 5.4:-40724672 | MS.gene027534:CDS |
| ATCTGGTAGTTTGGAACGCA+AGG | 0.505664 | 5.4:+40725222 | None:intergenic |
| TTTGGATGGAATGCTGGGAA+GGG | 0.507438 | 5.4:-40724836 | MS.gene027534:CDS |
| AAACTTAAATTCAAAGGAAG+AGG | 0.508991 | 5.4:-40725476 | MS.gene027534:CDS |
| AATTTGTTGATAATGATTGA+AGG | 0.512989 | 5.4:+40725393 | None:intergenic |
| AAATGTTTGTTCTGAGGGAA+AGG | 0.513031 | 5.4:+40725955 | None:intergenic |
| TTTGGTTTGTGGAAGGACAT+TGG | 0.522019 | 5.4:-40725991 | MS.gene027534:CDS |
| ATTTGTTGATAATGATTGAA+GGG | 0.523333 | 5.4:+40725394 | None:intergenic |
| TGATATTAAAACAAGTCCCT+TGG | 0.523624 | 5.4:-40725419 | MS.gene027534:CDS |
| GGGAACAAGAAAGGTTTGGA+TGG | 0.524181 | 5.4:-40724850 | MS.gene027534:CDS |
| GAAGGAAGGGGAAGAATCAA+GGG | 0.524849 | 5.4:-40725834 | MS.gene027534:intron |
| GACAATGGTTGATTCAATAC+CGG | 0.525844 | 5.4:+40725880 | None:intergenic |
| CAAGGAATCATTTGAAGCCA+AGG | 0.529560 | 5.4:+40725240 | None:intergenic |
| CCAAGCAAACTTAAATTCAA+AGG | 0.533386 | 5.4:-40725482 | MS.gene027534:CDS |
| TAAATTTAGTTGTTATGTGT+TGG | 0.533784 | 5.4:-40724759 | MS.gene027534:CDS |
| AGTTTGGTGGAACAAACAAA+TGG | 0.535620 | 5.4:-40724784 | MS.gene027534:CDS |
| TCATGCCGAGTCAGTTGACT+CGG | 0.535630 | 5.4:-40725344 | MS.gene027534:CDS |
| TGGTTAAATGTTTGTTCTGA+GGG | 0.543646 | 5.4:+40725950 | None:intergenic |
| TATTCAAACAGAAGTTGCTA+AGG | 0.547553 | 5.4:-40724990 | MS.gene027534:CDS |
| TTATTATGTCATAAGAAGGA+AGG | 0.558609 | 5.4:-40725848 | MS.gene027534:CDS |
| GGTGGATCTGAAAGAGCACT+AGG | 0.560326 | 5.4:+40726078 | None:intergenic |
| AAAGGTTTGGATGGAATGCT+GGG | 0.561735 | 5.4:-40724841 | MS.gene027534:CDS |
| GCCGAGTCAGTTGACTCGGA+TGG | 0.564921 | 5.4:-40725340 | MS.gene027534:CDS |
| GACTCGGATGGAATTCCTTG+TGG | 0.570357 | 5.4:-40725328 | MS.gene027534:CDS |
| ATGGTTAAATGTTTGTTCTG+AGG | 0.571762 | 5.4:+40725949 | None:intergenic |
| TATTATGTCATAAGAAGGAA+GGG | 0.576465 | 5.4:-40725847 | MS.gene027534:CDS |
| ACAAAACTTGAAGAGTTTGG+TGG | 0.583800 | 5.4:-40724797 | MS.gene027534:CDS |
| CAAATGGTAGTTTGTAGGAG+TGG | 0.588488 | 5.4:+40725270 | None:intergenic |
| TAACCGGAATTTGGACCTGA+TGG | 0.589112 | 5.4:+40726054 | None:intergenic |
| ATAATGATTGAAGGGCTCCA+AGG | 0.592883 | 5.4:+40725402 | None:intergenic |
| GTTGACGCTCGAGCAAAGAT+GGG | 0.596375 | 5.4:-40725074 | MS.gene027534:CDS |
| TAATGATTGAAGGGCTCCAA+GGG | 0.597144 | 5.4:+40725403 | None:intergenic |
| AGTTGCTAAGGTTGAAGGAA+AGG | 0.599670 | 5.4:-40724978 | MS.gene027534:CDS |
| TCCATCCGAGTCAACTGACT+CGG | 0.600261 | 5.4:+40725339 | None:intergenic |
| TATACCTTCAAAATCACTGA+TGG | 0.602792 | 5.4:+40725930 | None:intergenic |
| TAATAACGGTTTGAAGACAA+TGG | 0.606208 | 5.4:+40725865 | None:intergenic |
| GAATTTGGACCTGATGGTGG+TGG | 0.611269 | 5.4:+40726060 | None:intergenic |
| ATTATGTCATAAGAAGGAAG+GGG | 0.660728 | 5.4:-40725846 | MS.gene027534:CDS |
| TAGGGAAAATGTATGCAGCA+AGG | 0.670125 | 5.4:-40726125 | None:intergenic |
| GTGGATCTGAAAGAGCACTA+GGG | 0.671016 | 5.4:+40726079 | None:intergenic |
| CCGGAATTTGGACCTGATGG+TGG | 0.694514 | 5.4:+40726057 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAGTAAATAATCAATA+AGG | + | chr5.4:40725116-40725135 | None:intergenic | 10.0% |
| !!! | AATTTTAAATATAATGTTCA+AGG | - | chr5.4:40725060-40725079 | MS.gene027534:CDS | 10.0% |
| !!! | AATAGATTAGTTATTATAAG+TGG | - | chr5.4:40725231-40725250 | MS.gene027534:CDS | 15.0% |
| !! | TAAATTTAGTTGTTATGTGT+TGG | - | chr5.4:40726025-40726044 | MS.gene027534:CDS | 20.0% |
| !!! | AAGTTTTGTATTAAAGAGAA+TGG | - | chr5.4:40726052-40726071 | MS.gene027534:CDS | 20.0% |
| !!! | AATTTGTTGATAATGATTGA+AGG | + | chr5.4:40725394-40725413 | None:intergenic | 20.0% |
| !!! | ATATTTTTTTAATTCCGTGT+AGG | - | chr5.4:40725004-40725023 | MS.gene027534:CDS | 20.0% |
| !!! | ATTTGTTGATAATGATTGAA+GGG | + | chr5.4:40725393-40725412 | None:intergenic | 20.0% |
| ! | AAACTTAAATTCAAAGGAAG+AGG | - | chr5.4:40725308-40725327 | MS.gene027534:CDS | 25.0% |
| ! | AAGTTGTTAAAGGAATGAAA+TGG | - | chr5.4:40725913-40725932 | MS.gene027534:CDS | 25.0% |
| ! | AATGACATTAAAGGAACAAA+TGG | - | chr5.4:40725668-40725687 | MS.gene027534:intron | 25.0% |
| ! | AATTCCTTGTGGTTTATTAA+GGG | - | chr5.4:40725467-40725486 | MS.gene027534:CDS | 25.0% |
| ! | ACATCAAATTAGGAGTAAAT+GGG | - | chr5.4:40726112-40726131 | MS.gene027534:CDS | 25.0% |
| ! | AGTTATAATGTTCGATTCTA+AGG | + | chr5.4:40725092-40725111 | None:intergenic | 25.0% |
| ! | AGTTGTTAAAGGAATGAAAT+GGG | - | chr5.4:40725914-40725933 | MS.gene027534:CDS | 25.0% |
| ! | ATCCAATATTACAAGATAAC+CGG | + | chr5.4:40724749-40724768 | None:intergenic | 25.0% |
| ! | TATTATGTCATAAGAAGGAA+GGG | - | chr5.4:40724937-40724956 | MS.gene027534:CDS | 25.0% |
| ! | TCCTTCTTATGACATAATAA+CGG | + | chr5.4:40724936-40724955 | None:intergenic | 25.0% |
| ! | TTATTATGTCATAAGAAGGA+AGG | - | chr5.4:40724936-40724955 | MS.gene027534:CDS | 25.0% |
| !! | TTTTAATATCATGGCCAAAA+TGG | + | chr5.4:40725356-40725375 | None:intergenic | 25.0% |
| AAAGTTGAAATCTGGTAGTT+TGG | + | chr5.4:40725574-40725593 | None:intergenic | 30.0% | |
| ACCGTTATTATGTCATAAGA+AGG | - | chr5.4:40724932-40724951 | MS.gene027534:CDS | 30.0% | |
| AGAAAATGTCATGTTTCTTC+CGG | - | chr5.4:40724885-40724904 | MS.gene027534:CDS | 30.0% | |
| ATGGTTAAATGTTTGTTCTG+AGG | + | chr5.4:40724838-40724857 | None:intergenic | 30.0% | |
| ATTACAAGATAACCGGAATT+TGG | + | chr5.4:40724742-40724761 | None:intergenic | 30.0% | |
| ATTATGTCATAAGAAGGAAG+GGG | - | chr5.4:40724938-40724957 | MS.gene027534:CDS | 30.0% | |
| CACATCAAATTAGGAGTAAA+TGG | - | chr5.4:40726111-40726130 | MS.gene027534:CDS | 30.0% | |
| CCAAGCAAACTTAAATTCAA+AGG | - | chr5.4:40725302-40725321 | MS.gene027534:CDS | 30.0% | |
| GAATTCCTTGTGGTTTATTA+AGG | - | chr5.4:40725466-40725485 | MS.gene027534:CDS | 30.0% | |
| GTAACAAAACTTGAAGAGTT+TGG | - | chr5.4:40725984-40726003 | MS.gene027534:CDS | 30.0% | |
| GTTTATTAAGGGAAAAAGTG+TGG | - | chr5.4:40725478-40725497 | MS.gene027534:CDS | 30.0% | |
| TAATAACGGTTTGAAGACAA+TGG | + | chr5.4:40724922-40724941 | None:intergenic | 30.0% | |
| TATACCTTCAAAATCACTGA+TGG | + | chr5.4:40724857-40724876 | None:intergenic | 30.0% | |
| TATGTCTTAAGCACACAATA+AGG | + | chr5.4:40725157-40725176 | None:intergenic | 30.0% | |
| TATTCAAACAGAAGTTGCTA+AGG | - | chr5.4:40725794-40725813 | MS.gene027534:intron | 30.0% | |
| TATTCGGGATGAAAATAGAT+TGG | - | chr5.4:40725833-40725852 | MS.gene027534:intron | 30.0% | |
| TGATATTAAAACAAGTCCCT+TGG | - | chr5.4:40725365-40725384 | MS.gene027534:CDS | 30.0% | |
| TGGTTAAATGTTTGTTCTGA+GGG | + | chr5.4:40724837-40724856 | None:intergenic | 30.0% | |
| TTCCGGTTATCTTGTAATAT+TGG | - | chr5.4:40724744-40724763 | MS.gene027534:CDS | 30.0% | |
| TTGAGTTTGGAAGTTGTTAA+AGG | - | chr5.4:40725903-40725922 | MS.gene027534:CDS | 30.0% | |
| ! | AGACATATTTTTCACGTTCT+AGG | - | chr5.4:40725195-40725214 | MS.gene027534:CDS | 30.0% |
| ! | AGTGTTGAAGATAAAAGTGT+TGG | - | chr5.4:40725879-40725898 | MS.gene027534:CDS | 30.0% |
| ! | ATACCATTTTCCAACAAGAA+CGG | + | chr5.4:40725622-40725641 | None:intergenic | 30.0% |
| ! | CCTTTGAATTTAAGTTTGCT+TGG | + | chr5.4:40725305-40725324 | None:intergenic | 30.0% |
| ! | GAAATAAGCAAGAAACGTTT+TGG | - | chr5.4:40725414-40725433 | MS.gene027534:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | - | chr5.4:40725840-40725859 | MS.gene027534:CDS | 30.0% |
| ! | TTAACCATCAGTGATTTTGA+AGG | - | chr5.4:40724850-40724869 | MS.gene027534:CDS | 30.0% |
| ! | TTGTCCTTTTATGTTTGTGA+AGG | - | chr5.4:40725641-40725660 | MS.gene027534:intron | 30.0% |
| ! | TTTTCCCTTAATAAACCACA+AGG | + | chr5.4:40725474-40725493 | None:intergenic | 30.0% |
| !! | GATAATGGAAAGTTGAAATC+TGG | + | chr5.4:40725582-40725601 | None:intergenic | 30.0% |
| !! | TAAAAGTGTTGGATTGAGTT+TGG | - | chr5.4:40725890-40725909 | MS.gene027534:CDS | 30.0% |
| !!! | AGGGACTTGTTTTAATATCA+TGG | + | chr5.4:40725365-40725384 | None:intergenic | 30.0% |
| AAATGGGAACAAGAAAGGTT+TGG | - | chr5.4:40725930-40725949 | MS.gene027534:CDS | 35.0% | |
| AATCCGTTCTTGTTGGAAAA+TGG | - | chr5.4:40725616-40725635 | MS.gene027534:intron | 35.0% | |
| ACAAAACTTGAAGAGTTTGG+TGG | - | chr5.4:40725987-40726006 | MS.gene027534:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+AGG | + | chr5.4:40725648-40725667 | None:intergenic | 35.0% | |
| GAAGGAAGGAATGACATTAA+AGG | - | chr5.4:40725659-40725678 | MS.gene027534:intron | 35.0% | |
| GAATGAAATGGGAACAAGAA+AGG | - | chr5.4:40725925-40725944 | MS.gene027534:CDS | 35.0% | |
| GCTCAAACTTACTCTTTCTT+TGG | - | chr5.4:40724775-40724794 | MS.gene027534:CDS | 35.0% | |
| TCAGAACGATCATTGGATAA+TGG | + | chr5.4:40725597-40725616 | None:intergenic | 35.0% | |
| TCAGACTCTCACATCAAATT+AGG | - | chr5.4:40726102-40726121 | MS.gene027534:CDS | 35.0% | |
| ! | AGTTTGGTGGAACAAACAAA+TGG | - | chr5.4:40726000-40726019 | MS.gene027534:CDS | 35.0% |
| ! | CCTTTTATGTTTGTGAAGGA+AGG | - | chr5.4:40725645-40725664 | MS.gene027534:intron | 35.0% |
| ! | GACAATGGTTGATTCAATAC+CGG | + | chr5.4:40724907-40724926 | None:intergenic | 35.0% |
| ! | TCACTCAAATGGTAGTTTGT+AGG | + | chr5.4:40725522-40725541 | None:intergenic | 35.0% |
| ! | TGAATTTAAGTTTGCTTGGC+TGG | + | chr5.4:40725301-40725320 | None:intergenic | 35.0% |
| !! | AAATGTTTGTTCTGAGGGAA+AGG | + | chr5.4:40724832-40724851 | None:intergenic | 35.0% |
| !! | CTTACTCTTTCTTTGGTTTG+TGG | - | chr5.4:40724782-40724801 | MS.gene027534:CDS | 35.0% |
| AAAGGTTTGGATGGAATGCT+GGG | - | chr5.4:40725943-40725962 | MS.gene027534:CDS | 40.0% | |
| ACAGAAGTTGCTAAGGTTGA+AGG | - | chr5.4:40725801-40725820 | MS.gene027534:intron | 40.0% | |
| AGTTGCTAAGGTTGAAGGAA+AGG | - | chr5.4:40725806-40725825 | MS.gene027534:intron | 40.0% | |
| ATAATGATTGAAGGGCTCCA+AGG | + | chr5.4:40725385-40725404 | None:intergenic | 40.0% | |
| CATCAATTGAGCTACCTACA+CGG | + | chr5.4:40725021-40725040 | None:intergenic | 40.0% | |
| TAATGATTGAAGGGCTCCAA+GGG | + | chr5.4:40725384-40725403 | None:intergenic | 40.0% | |
| TGTGGAAGGACATTGGTATT+GGG | - | chr5.4:40724800-40724819 | MS.gene027534:CDS | 40.0% | |
| TTGAAGGAAAGGACGCTATT+CGG | - | chr5.4:40725817-40725836 | MS.gene027534:intron | 40.0% | |
| TTGTGGAAGGACATTGGTAT+TGG | - | chr5.4:40724799-40724818 | MS.gene027534:CDS | 40.0% | |
| ! | AACGGATTCAGAACGATCAT+TGG | + | chr5.4:40725604-40725623 | None:intergenic | 40.0% |
| ! | ACTAGGGTTCCTTTTGTACA+TGG | + | chr5.4:40724692-40724711 | None:intergenic | 40.0% |
| ! | CAAATGGTAGTTTGTAGGAG+TGG | + | chr5.4:40725517-40725536 | None:intergenic | 40.0% |
| ! | CAAGGAATCATTTGAAGCCA+AGG | + | chr5.4:40725547-40725566 | None:intergenic | 40.0% |
| ! | GGTTCCTTTTGTACATGGAA+AGG | + | chr5.4:40724687-40724706 | None:intergenic | 40.0% |
| !! | ACTAGTGTATGCTGCCATTT+TGG | - | chr5.4:40725339-40725358 | MS.gene027534:CDS | 40.0% |
| !! | CTCTTTCTTTGGTTTGTGGA+AGG | - | chr5.4:40724786-40724805 | MS.gene027534:CDS | 40.0% |
| !! | TTTGGTTTGTGGAAGGACAT+TGG | - | chr5.4:40724793-40724812 | MS.gene027534:CDS | 40.0% |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | - | chr5.4:40725850-40725869 | MS.gene027534:CDS | 40.0% |
| AAGCCAAGGCTTCACTCAAA+TGG | + | chr5.4:40725533-40725552 | None:intergenic | 45.0% | |
| AGAAGGAAGGGGAAGAATCA+AGG | - | chr5.4:40724949-40724968 | MS.gene027534:CDS | 45.0% | |
| CTACCATTTGAGTGAAGCCT+TGG | - | chr5.4:40725527-40725546 | MS.gene027534:intron | 45.0% | |
| GAAAGGTTTGGATGGAATGC+TGG | - | chr5.4:40725942-40725961 | MS.gene027534:CDS | 45.0% | |
| GAAGGAAGGGGAAGAATCAA+GGG | - | chr5.4:40724950-40724969 | MS.gene027534:CDS | 45.0% | |
| GGCTCCTTTCCATGTACAAA+AGG | - | chr5.4:40724680-40724699 | MS.gene027534:CDS | 45.0% | |
| GGGAACAAGAAAGGTTTGGA+TGG | - | chr5.4:40725934-40725953 | MS.gene027534:CDS | 45.0% | |
| TAACCGGAATTTGGACCTGA+TGG | + | chr5.4:40724733-40724752 | None:intergenic | 45.0% | |
| TGAAGGAAAGGACGCTATTC+GGG | - | chr5.4:40725818-40725837 | MS.gene027534:intron | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | - | chr5.4:40725948-40725967 | MS.gene027534:CDS | 45.0% | |
| ! | ATCTGGTAGTTTGGAACGCA+AGG | + | chr5.4:40725565-40725584 | None:intergenic | 45.0% |
| ! | CGTTCTGAATCCGTTCTTGT+TGG | - | chr5.4:40725609-40725628 | MS.gene027534:intron | 45.0% |
| !! | GTGGATCTGAAAGAGCACTA+GGG | + | chr5.4:40724708-40724727 | None:intergenic | 45.0% |
| AGTTGACGCTCGAGCAAAGA+TGG | - | chr5.4:40725709-40725728 | MS.gene027534:intron | 50.0% | |
| CCACCATCAGGTCCAAATTC+CGG | - | chr5.4:40724727-40724746 | MS.gene027534:CDS | 50.0% | |
| CTTTCAGATCCACCACCATC+AGG | - | chr5.4:40724715-40724734 | MS.gene027534:CDS | 50.0% | |
| GACTCGGATGGAATTCCTTG+TGG | - | chr5.4:40725456-40725475 | MS.gene027534:CDS | 50.0% | |
| GTTGACGCTCGAGCAAAGAT+GGG | - | chr5.4:40725710-40725729 | MS.gene027534:intron | 50.0% | |
| GTTTGGATGGAATGCTGGGA+AGG | - | chr5.4:40725947-40725966 | MS.gene027534:CDS | 50.0% | |
| TCATGCCGAGTCAGTTGACT+CGG | - | chr5.4:40725440-40725459 | MS.gene027534:CDS | 50.0% | |
| TCCATCCGAGTCAACTGACT+CGG | + | chr5.4:40725448-40725467 | None:intergenic | 50.0% | |
| !! | GAATTTGGACCTGATGGTGG+TGG | + | chr5.4:40724727-40724746 | None:intergenic | 50.0% |
| !! | GGTGGATCTGAAAGAGCACT+AGG | + | chr5.4:40724709-40724728 | None:intergenic | 50.0% |
| CCGGAATTTGGACCTGATGG+TGG | + | chr5.4:40724730-40724749 | None:intergenic | 55.0% | |
| GAATGCTGGGAAGGGAAGAC+AGG | - | chr5.4:40725956-40725975 | MS.gene027534:CDS | 55.0% | |
| !! | GCCGAGTCAGTTGACTCGGA+TGG | - | chr5.4:40725444-40725463 | MS.gene027534:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 40724667 | 40726139 | 40724667 | ID=MS.gene027534 |
| chr5.4 | mRNA | 40724667 | 40726139 | 40724667 | ID=MS.gene027534.t1;Parent=MS.gene027534 |
| chr5.4 | exon | 40725835 | 40726139 | 40725835 | ID=MS.gene027534.t1.exon1;Parent=MS.gene027534.t1 |
| chr5.4 | CDS | 40725835 | 40726139 | 40725835 | ID=cds.MS.gene027534.t1;Parent=MS.gene027534.t1 |
| chr5.4 | exon | 40724667 | 40725504 | 40724667 | ID=MS.gene027534.t1.exon2;Parent=MS.gene027534.t1 |
| chr5.4 | CDS | 40724667 | 40725504 | 40724667 | ID=cds.MS.gene027534.t1;Parent=MS.gene027534.t1 |
| Gene Sequence |
| Protein sequence |
