Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45116.t1 | XP_003613367.1 | 86.3 | 380 | 50 | 1 | 1 | 378 | 1 | 380 | 1.80E-192 | 681.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45116.t1 | G7K480 | 86.3 | 380 | 50 | 1 | 1 | 378 | 1 | 380 | 1.3e-192 | 681.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45115 | MS.gene45116 | PPI |
| MS.gene45116 | MS.gene027543 | PPI |
| MS.gene45116 | MS.gene053932 | PPI |
| MS.gene68296 | MS.gene45116 | PPI |
| MS.gene45116 | MS.gene45120 | PPI |
| MS.gene68297 | MS.gene45116 | PPI |
| MS.gene45116 | MS.gene45118 | PPI |
| MS.gene45116 | MS.gene027540 | PPI |
| MS.gene68295 | MS.gene45116 | PPI |
| MS.gene45116 | MS.gene78745 | PPI |
| MS.gene43935 | MS.gene45116 | PPI |
| MS.gene45117 | MS.gene45116 | PPI |
| MS.gene027544 | MS.gene45116 | PPI |
| MS.gene027534 | MS.gene45116 | PPI |
| MS.gene45116 | MS.gene027538 | PPI |
| MS.gene45116 | MS.gene027536 | PPI |
| MS.gene027537 | MS.gene45116 | PPI |
| MS.gene45116 | MS.gene027539 | PPI |
| MS.gene45116 | MS.gene042700 | PPI |
| MS.gene045965 | MS.gene45116 | PPI |
| MS.gene45116 | MS.gene45114 | PPI |
| MS.gene45116 | MS.gene68298 | PPI |
| MS.gene68293 | MS.gene45116 | PPI |
| MS.gene45116 | MS.gene43936 | PPI |
| MS.gene45116 | MS.gene45119 | PPI |
| MS.gene45116 | MS.gene68292 | PPI |
| MS.gene027535 | MS.gene45116 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45116.t1 | MTR_5g035760 | 86.316 | 380 | 50 | 1 | 1 | 378 | 1 | 380 | 0.0 | 684 |
| MS.gene45116.t1 | MTR_5g035665 | 72.823 | 379 | 98 | 3 | 1 | 376 | 1 | 377 | 0.0 | 556 |
| MS.gene45116.t1 | MTR_5g035690 | 70.103 | 388 | 104 | 3 | 1 | 378 | 1 | 386 | 0.0 | 544 |
| MS.gene45116.t1 | MTR_5g035750 | 70.437 | 389 | 102 | 4 | 1 | 378 | 1 | 387 | 0.0 | 535 |
| MS.gene45116.t1 | MTR_5g035670 | 69.554 | 381 | 113 | 2 | 1 | 378 | 1 | 381 | 0.0 | 525 |
| MS.gene45116.t1 | MTR_6g472110 | 46.384 | 401 | 190 | 10 | 1 | 378 | 1 | 399 | 2.72e-106 | 318 |
| MS.gene45116.t1 | MTR_6g016660 | 38.806 | 402 | 218 | 10 | 1 | 378 | 1 | 398 | 1.98e-79 | 249 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45116.t1 | AT1G13540 | 43.257 | 393 | 196 | 12 | 1 | 378 | 1 | 381 | 5.92e-84 | 260 |
| MS.gene45116.t1 | AT1G13510 | 41.327 | 392 | 204 | 12 | 1 | 378 | 1 | 380 | 1.90e-83 | 259 |
| MS.gene45116.t1 | AT1G13480 | 40.806 | 397 | 206 | 11 | 1 | 378 | 1 | 387 | 5.31e-83 | 258 |
| MS.gene45116.t1 | AT1G13530 | 42.132 | 394 | 203 | 11 | 1 | 378 | 1 | 385 | 7.51e-82 | 255 |
| MS.gene45116.t1 | AT1G13520 | 41.310 | 397 | 204 | 13 | 1 | 378 | 1 | 387 | 1.14e-81 | 255 |
| MS.gene45116.t1 | AT1G13490 | 42.199 | 391 | 204 | 12 | 1 | 378 | 1 | 382 | 1.65e-80 | 251 |
| MS.gene45116.t1 | AT1G13550 | 40.404 | 396 | 202 | 13 | 1 | 374 | 1 | 384 | 2.20e-78 | 246 |
| MS.gene45116.t1 | AT1G13470 | 40.712 | 393 | 203 | 13 | 1 | 378 | 1 | 378 | 2.28e-75 | 238 |
| MS.gene45116.t1 | AT1G13490 | 41.026 | 390 | 191 | 12 | 1 | 378 | 1 | 363 | 4.74e-74 | 234 |
| MS.gene45116.t1 | AT1G13500 | 40.759 | 395 | 208 | 13 | 1 | 378 | 1 | 386 | 2.82e-73 | 233 |
| MS.gene45116.t1 | AT1G61600 | 36.557 | 424 | 220 | 12 | 1 | 378 | 1 | 421 | 1.89e-70 | 227 |
Find 90 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGATTTGGATGGATTTC+TGG | 0.112454 | 5.1:+26323599 | MS.gene45116:CDS |
| GAACTCCTTGTGGTTTATTA+AGG | 0.148355 | 5.1:+26323123 | MS.gene45116:CDS |
| ATTACAAGATAACCTGAATT+TGG | 0.200249 | 5.1:-26322409 | None:intergenic |
| TTCAGGTTATCTTGTAATAT+TGG | 0.212889 | 5.1:+26322414 | MS.gene45116:CDS |
| CCTTCCTTCACAAACATAAA+AGG | 0.226109 | 5.1:-26323302 | None:intergenic |
| GCTCAGACTTTCTCTTTCTT+TGG | 0.248445 | 5.1:+26322445 | MS.gene45116:CDS |
| ATTAATGTATGCTGCCATTT+TGG | 0.257053 | 5.1:+26322996 | MS.gene45116:CDS |
| TTGAGTTTGGAAGTTGTTAA+AGG | 0.263829 | 5.1:+26323560 | MS.gene45116:CDS |
| TCAGACACTCACATCAAATT+AGG | 0.281648 | 5.1:+26323759 | MS.gene45116:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5.1:+26323547 | MS.gene45116:CDS |
| CACATCAAATTAGGAGGAAA+TGG | 0.302292 | 5.1:+26323768 | MS.gene45116:CDS |
| GAAATAAGCAAGAAACGTTT+TGG | 0.310305 | 5.1:+26323071 | MS.gene45116:CDS |
| AACCAGTCGTTGTTGGAAAA+TGG | 0.314365 | 5.1:+26323273 | MS.gene45116:CDS |
| CTTTCTCTTTCTTTGGTTTG+TGG | 0.337260 | 5.1:+26322452 | MS.gene45116:CDS |
| CCACCATCAGGTCCAAATTC+AGG | 0.352655 | 5.1:+26322397 | MS.gene45116:CDS |
| AACTCCTTGTGGTTTATTAA+GGG | 0.361842 | 5.1:+26323124 | MS.gene45116:CDS |
| TGTGGAAGGACATTGGTATT+GGG | 0.363284 | 5.1:+26322470 | MS.gene45116:CDS |
| AAAGATTTGGATGGATTTCT+GGG | 0.363362 | 5.1:+26323600 | MS.gene45116:CDS |
| GAAGGAAGGAATGACATTAA+AGG | 0.380941 | 5.1:+26323316 | MS.gene45116:CDS |
| CCTTTGAATTTAAGCTTGCT+TGG | 0.381424 | 5.1:-26322959 | None:intergenic |
| AAATGGGAACAAGAAAGATT+TGG | 0.385031 | 5.1:+26323587 | MS.gene45116:CDS |
| TCACTCAAATGGTAATTTGT+AGG | 0.387265 | 5.1:-26323176 | None:intergenic |
| CTCTTTCTTTGGTTTGTGGA+AGG | 0.394596 | 5.1:+26322456 | MS.gene45116:CDS |
| AGAAAATGTCATGTTCCTTC+CGG | 0.397704 | 5.1:+26322555 | MS.gene45116:CDS |
| GACAATGGAAAGTTGAAATC+TGG | 0.400529 | 5.1:-26323236 | None:intergenic |
| TTGTGGAAGGACATTGGTAT+TGG | 0.416602 | 5.1:+26322469 | MS.gene45116:CDS |
| CGTTCTGAACCAGTCGTTGT+TGG | 0.418054 | 5.1:+26323266 | MS.gene45116:CDS |
| TCATGCCGAGTCGGTTGCCT+TGG | 0.428872 | 5.1:+26323097 | MS.gene45116:CDS |
| CTTCAATCATTATCAACAAA+TGG | 0.442238 | 5.1:+26323049 | MS.gene45116:CDS |
| AAGCCAAGGCTTCACTCAAA+TGG | 0.444491 | 5.1:-26323187 | None:intergenic |
| GACTGGTTCAGAACGATCAT+TGG | 0.445272 | 5.1:-26323258 | None:intergenic |
| ACAGAAGATGCTAAGGTTGA+AGG | 0.453239 | 5.1:+26323458 | MS.gene45116:CDS |
| GACTCCTTTCCATGTACAAA+AGG | 0.456814 | 5.1:+26322350 | MS.gene45116:CDS |
| AAGTTGTTAAAGGAATGAAA+TGG | 0.456844 | 5.1:+26323570 | MS.gene45116:CDS |
| GCCGAGTCGGTTGCCTTGGA+TGG | 0.457876 | 5.1:+26323101 | MS.gene45116:CDS |
| TTCGTTATTATGTCATAAGA+AGG | 0.458010 | 5.1:+26322597 | MS.gene45116:CDS |
| AAAGAGAATGGATAGAAGAT+TGG | 0.461207 | 5.1:+26323721 | MS.gene45116:CDS |
| AGTTGACGCTCGAGCAAAGA+TGG | 0.461286 | 5.1:+26323366 | MS.gene45116:CDS |
| AAATGTTTGTTCTGAGGGAA+AGG | 0.464248 | 5.1:-26322499 | None:intergenic |
| GATGAAAATAGATTGGTTGA+TGG | 0.464503 | 5.1:+26323497 | MS.gene45116:CDS |
| AGTTGTTAAAGGAATGAAAT+GGG | 0.466263 | 5.1:+26323571 | MS.gene45116:CDS |
| TTACCATTTGAGTGAAGCCT+TGG | 0.467858 | 5.1:+26323184 | MS.gene45116:CDS |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5.1:+26323536 | MS.gene45116:CDS |
| CTTTCAGATCCACCACCATC+AGG | 0.493605 | 5.1:+26322385 | MS.gene45116:CDS |
| CATTTGTTGATAATGATTGA+AGG | 0.498362 | 5.1:-26323048 | None:intergenic |
| AAGCTTAAATTCAAAGGAAG+AGG | 0.501960 | 5.1:+26322965 | MS.gene45116:CDS |
| ACATCAAATTAGGAGGAAAT+GGG | 0.504682 | 5.1:+26323769 | MS.gene45116:CDS |
| AATGTTTGTTCTGAGGGAAA+GGG | 0.516697 | 5.1:-26322498 | None:intergenic |
| AGATATTAAAACAAGTCCCT+TGG | 0.516804 | 5.1:+26323022 | MS.gene45116:CDS |
| ATCTGGTAGCTTAGAACGCA+AGG | 0.519737 | 5.1:-26323219 | None:intergenic |
| GCCTTGGATGGAACTCCTTG+TGG | 0.519837 | 5.1:+26323113 | MS.gene45116:CDS |
| TTTGGTTTGTGGAAGGACAT+TGG | 0.522019 | 5.1:+26322463 | MS.gene45116:CDS |
| ATTTGTTGATAATGATTGAA+GGG | 0.523333 | 5.1:-26323047 | None:intergenic |
| GATTGGTTGATGGAGTTTCG+TGG | 0.524222 | 5.1:+26323507 | MS.gene45116:CDS |
| TTTGGATGGATTTCTGGGAA+TGG | 0.524782 | 5.1:+26323605 | MS.gene45116:CDS |
| AGAAGGAAGGGGAAGAATCA+AGG | 0.525177 | 5.1:+26322614 | MS.gene45116:CDS |
| ACAAAAGTTGAGGAGTTTGA+AGG | 0.527906 | 5.1:+26323644 | MS.gene45116:CDS |
| GACAATGGTTGATTCAATAC+CGG | 0.528283 | 5.1:-26322574 | None:intergenic |
| CAAGGAATCATTTGAAGCCA+AGG | 0.529560 | 5.1:-26323201 | None:intergenic |
| AATGACATTAAAGGAACAGA+TGG | 0.531283 | 5.1:+26323325 | MS.gene45116:CDS |
| AGTTTGAAGGAACAAACAAA+TGG | 0.536388 | 5.1:+26323657 | MS.gene45116:CDS |
| TGGTTAAATGTTTGTTCTGA+GGG | 0.543646 | 5.1:-26322504 | None:intergenic |
| CCAAGCAAGCTTAAATTCAA+AGG | 0.548110 | 5.1:+26322959 | MS.gene45116:CDS |
| TTATTATGTCATAAGAAGGA+AGG | 0.548838 | 5.1:+26322601 | MS.gene45116:CDS |
| TATTCAGACAGAAGATGCTA+AGG | 0.549658 | 5.1:+26323451 | MS.gene45116:CDS |
| TGTGTGGGATGAAAATAGAT+TGG | 0.554231 | 5.1:+26323490 | MS.gene45116:CDS |
| AGATGCTAAGGTTGAAGGAA+AGG | 0.559587 | 5.1:+26323463 | MS.gene45116:CDS |
| GGGAACAAGAAAGATTTGGA+TGG | 0.559657 | 5.1:+26323591 | MS.gene45116:CDS |
| GGTGGATCTGAAAGAGCACT+AGG | 0.560326 | 5.1:-26322376 | None:intergenic |
| TCCATCCAAGGCAACCGACT+CGG | 0.562760 | 5.1:-26323102 | None:intergenic |
| GACACTCACATCAAATTAGG+AGG | 0.566138 | 5.1:+26323762 | MS.gene45116:CDS |
| ATGGTTAAATGTTTGTTCTG+AGG | 0.571762 | 5.1:-26322505 | None:intergenic |
| TATTATGTCATAAGAAGGAA+GGG | 0.576465 | 5.1:+26322602 | MS.gene45116:CDS |
| CAAATGGTAATTTGTAGGAG+TGG | 0.588994 | 5.1:-26323171 | None:intergenic |
| ATAATGATTGAAGGGCTCCA+AGG | 0.592883 | 5.1:-26323039 | None:intergenic |
| AGTGAGAGTAACAAAAGTTG+AGG | 0.593305 | 5.1:+26323634 | MS.gene45116:CDS |
| GTTGACGCTCGAGCAAAGAT+GGG | 0.596375 | 5.1:+26323367 | MS.gene45116:CDS |
| TAATGATTGAAGGGCTCCAA+GGG | 0.597144 | 5.1:-26323038 | None:intergenic |
| TGAAGGAAAGGATGTTGTGT+GGG | 0.600380 | 5.1:+26323475 | MS.gene45116:CDS |
| TAACCTGAATTTGGACCTGA+TGG | 0.602045 | 5.1:-26322400 | None:intergenic |
| GAATTTGGACCTGATGGTGG+TGG | 0.603370 | 5.1:-26322394 | None:intergenic |
| TCTACCTTCAAAATCACTGA+TGG | 0.603895 | 5.1:-26322524 | None:intergenic |
| TGACATAATAACGAAGACAA+TGG | 0.636783 | 5.1:-26322589 | None:intergenic |
| ACCACAAGGAGTTCCATCCA+AGG | 0.647744 | 5.1:-26323114 | None:intergenic |
| ATGGTTGATTCAATACCGGA+AGG | 0.657288 | 5.1:-26322570 | None:intergenic |
| ATTATGTCATAAGAAGGAAG+GGG | 0.660728 | 5.1:+26322603 | MS.gene45116:CDS |
| TCAGAACGATCATTGGACAA+TGG | 0.661451 | 5.1:-26323251 | None:intergenic |
| GTGGATCTGAAAGAGCACTA+GGG | 0.671016 | 5.1:-26322375 | None:intergenic |
| CCTGAATTTGGACCTGATGG+TGG | 0.683103 | 5.1:-26322397 | None:intergenic |
| TTGAAGGAAAGGATGTTGTG+TGG | 0.692514 | 5.1:+26323474 | MS.gene45116:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATATTATTAATTTTGTGT+AGG | + | chr5.1:26322667-26322686 | MS.gene45116:intron | 15.0% |
| !!! | AATCGATTAGTTATTATTAG+TGG | + | chr5.1:26322896-26322915 | MS.gene45116:intron | 20.0% |
| !!! | ATGTTTTGTATTAAAGAGAA+TGG | + | chr5.1:26323709-26323728 | MS.gene45116:CDS | 20.0% |
| !!! | ATTTGTTGATAATGATTGAA+GGG | - | chr5.1:26323050-26323069 | None:intergenic | 20.0% |
| !!! | TTTTAATATCTTGACCAAAA+TGG | - | chr5.1:26323013-26323032 | None:intergenic | 20.0% |
| ! | AAATATTTAAGCACACAGAA+AGG | - | chr5.1:26322823-26322842 | None:intergenic | 25.0% |
| ! | AAGTTGTTAAAGGAATGAAA+TGG | + | chr5.1:26323570-26323589 | MS.gene45116:CDS | 25.0% |
| ! | AGTTGTTAAAGGAATGAAAT+GGG | + | chr5.1:26323571-26323590 | MS.gene45116:CDS | 25.0% |
| ! | ATTACAAGATAACCTGAATT+TGG | - | chr5.1:26322412-26322431 | None:intergenic | 25.0% |
| ! | CTTCAATCATTATCAACAAA+TGG | + | chr5.1:26323049-26323068 | MS.gene45116:CDS | 25.0% |
| ! | TATTATGTCATAAGAAGGAA+GGG | + | chr5.1:26322602-26322621 | MS.gene45116:CDS | 25.0% |
| ! | TTATTATGTCATAAGAAGGA+AGG | + | chr5.1:26322601-26322620 | MS.gene45116:CDS | 25.0% |
| ! | TTCGTTATTATGTCATAAGA+AGG | + | chr5.1:26322597-26322616 | MS.gene45116:CDS | 25.0% |
| !! | TTCAGGTTATCTTGTAATAT+TGG | + | chr5.1:26322414-26322433 | MS.gene45116:CDS | 25.0% |
| !!! | AGTTTTAAATAGAACGTTCA+AGG | + | chr5.1:26322723-26322742 | MS.gene45116:intron | 25.0% |
| !!! | CATTTGTTGATAATGATTGA+AGG | - | chr5.1:26323051-26323070 | None:intergenic | 25.0% |
| AAAGAGAATGGATAGAAGAT+TGG | + | chr5.1:26323721-26323740 | MS.gene45116:CDS | 30.0% | |
| AAATGGGAACAAGAAAGATT+TGG | + | chr5.1:26323587-26323606 | MS.gene45116:CDS | 30.0% | |
| AACTCCTTGTGGTTTATTAA+GGG | + | chr5.1:26323124-26323143 | MS.gene45116:CDS | 30.0% | |
| AAGCTTAAATTCAAAGGAAG+AGG | + | chr5.1:26322965-26322984 | MS.gene45116:CDS | 30.0% | |
| AATGACATTAAAGGAACAGA+TGG | + | chr5.1:26323325-26323344 | MS.gene45116:CDS | 30.0% | |
| ACATCAAATTAGGAGGAAAT+GGG | + | chr5.1:26323769-26323788 | MS.gene45116:CDS | 30.0% | |
| AGATATTAAAACAAGTCCCT+TGG | + | chr5.1:26323022-26323041 | MS.gene45116:CDS | 30.0% | |
| AGCTATAATGTCTGATTCTA+TGG | - | chr5.1:26322758-26322777 | None:intergenic | 30.0% | |
| AGTTTGAAGGAACAAACAAA+TGG | + | chr5.1:26323657-26323676 | MS.gene45116:CDS | 30.0% | |
| ATGGTTAAATGTTTGTTCTG+AGG | - | chr5.1:26322508-26322527 | None:intergenic | 30.0% | |
| ATTATGTCATAAGAAGGAAG+GGG | + | chr5.1:26322603-26322622 | MS.gene45116:CDS | 30.0% | |
| GTTTATTAAGGGAAAAAGTG+TGG | + | chr5.1:26323135-26323154 | MS.gene45116:CDS | 30.0% | |
| TGACATAATAACGAAGACAA+TGG | - | chr5.1:26322592-26322611 | None:intergenic | 30.0% | |
| TGGTTAAATGTTTGTTCTGA+GGG | - | chr5.1:26322507-26322526 | None:intergenic | 30.0% | |
| TTGAGTTTGGAAGTTGTTAA+AGG | + | chr5.1:26323560-26323579 | MS.gene45116:CDS | 30.0% | |
| ! | AAAGATTTGGATGGATTTCT+GGG | + | chr5.1:26323600-26323619 | MS.gene45116:CDS | 30.0% |
| ! | GAAATAAGCAAGAAACGTTT+TGG | + | chr5.1:26323071-26323090 | MS.gene45116:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.1:26323497-26323516 | MS.gene45116:CDS | 30.0% |
| ! | TCACTCAAATGGTAATTTGT+AGG | - | chr5.1:26323179-26323198 | None:intergenic | 30.0% |
| ! | TTAACCATCAGTGATTTTGA+AGG | + | chr5.1:26322520-26322539 | MS.gene45116:CDS | 30.0% |
| ! | TTGTCCTTTTATGTTTGTGA+AGG | + | chr5.1:26323298-26323317 | MS.gene45116:CDS | 30.0% |
| ! | TTTTCCCTTAATAAACCACA+AGG | - | chr5.1:26323131-26323150 | None:intergenic | 30.0% |
| !! | ATTAATGTATGCTGCCATTT+TGG | + | chr5.1:26322996-26323015 | MS.gene45116:CDS | 30.0% |
| ACAAAAGTTGAGGAGTTTGA+AGG | + | chr5.1:26323644-26323663 | MS.gene45116:CDS | 35.0% | |
| AGAAAATGTCATGTTCCTTC+CGG | + | chr5.1:26322555-26322574 | MS.gene45116:CDS | 35.0% | |
| AGTGAGAGTAACAAAAGTTG+AGG | + | chr5.1:26323634-26323653 | MS.gene45116:CDS | 35.0% | |
| CACATCAAATTAGGAGGAAA+TGG | + | chr5.1:26323768-26323787 | MS.gene45116:CDS | 35.0% | |
| CCAAGCAAGCTTAAATTCAA+AGG | + | chr5.1:26322959-26322978 | MS.gene45116:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+AGG | - | chr5.1:26323305-26323324 | None:intergenic | 35.0% | |
| GAACTCCTTGTGGTTTATTA+AGG | + | chr5.1:26323123-26323142 | MS.gene45116:CDS | 35.0% | |
| GAAGGAAGGAATGACATTAA+AGG | + | chr5.1:26323316-26323335 | MS.gene45116:CDS | 35.0% | |
| GACAATGGAAAGTTGAAATC+TGG | - | chr5.1:26323239-26323258 | None:intergenic | 35.0% | |
| TATTCAGACAGAAGATGCTA+AGG | + | chr5.1:26323451-26323470 | MS.gene45116:CDS | 35.0% | |
| TCAGACACTCACATCAAATT+AGG | + | chr5.1:26323759-26323778 | MS.gene45116:CDS | 35.0% | |
| TCTACCTTCAAAATCACTGA+TGG | - | chr5.1:26322527-26322546 | None:intergenic | 35.0% | |
| TGTGTGGGATGAAAATAGAT+TGG | + | chr5.1:26323490-26323509 | MS.gene45116:CDS | 35.0% | |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5.1:26323536-26323555 | MS.gene45116:CDS | 35.0% |
| ! | CAAATGGTAATTTGTAGGAG+TGG | - | chr5.1:26323174-26323193 | None:intergenic | 35.0% |
| ! | CCTTTGAATTTAAGCTTGCT+TGG | - | chr5.1:26322962-26322981 | None:intergenic | 35.0% |
| ! | CCTTTTATGTTTGTGAAGGA+AGG | + | chr5.1:26323302-26323321 | MS.gene45116:CDS | 35.0% |
| ! | GAAAGATTTGGATGGATTTC+TGG | + | chr5.1:26323599-26323618 | MS.gene45116:CDS | 35.0% |
| ! | GACAATGGTTGATTCAATAC+CGG | - | chr5.1:26322577-26322596 | None:intergenic | 35.0% |
| !! | AAATGTTTGTTCTGAGGGAA+AGG | - | chr5.1:26322502-26322521 | None:intergenic | 35.0% |
| !! | AATGTTTGTTCTGAGGGAAA+GGG | - | chr5.1:26322501-26322520 | None:intergenic | 35.0% |
| !! | CTTTCTCTTTCTTTGGTTTG+TGG | + | chr5.1:26322452-26322471 | MS.gene45116:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.1:26323547-26323566 | MS.gene45116:CDS | 35.0% |
| AACCAGTCGTTGTTGGAAAA+TGG | + | chr5.1:26323273-26323292 | MS.gene45116:CDS | 40.0% | |
| ACAGAAGATGCTAAGGTTGA+AGG | + | chr5.1:26323458-26323477 | MS.gene45116:CDS | 40.0% | |
| AGATGCTAAGGTTGAAGGAA+AGG | + | chr5.1:26323463-26323482 | MS.gene45116:CDS | 40.0% | |
| ATAATGATTGAAGGGCTCCA+AGG | - | chr5.1:26323042-26323061 | None:intergenic | 40.0% | |
| GACACTCACATCAAATTAGG+AGG | + | chr5.1:26323762-26323781 | MS.gene45116:CDS | 40.0% | |
| GACTCCTTTCCATGTACAAA+AGG | + | chr5.1:26322350-26322369 | MS.gene45116:CDS | 40.0% | |
| GCTCAGACTTTCTCTTTCTT+TGG | + | chr5.1:26322445-26322464 | MS.gene45116:CDS | 40.0% | |
| GGGAACAAGAAAGATTTGGA+TGG | + | chr5.1:26323591-26323610 | MS.gene45116:CDS | 40.0% | |
| TAACCTGAATTTGGACCTGA+TGG | - | chr5.1:26322403-26322422 | None:intergenic | 40.0% | |
| TAATGATTGAAGGGCTCCAA+GGG | - | chr5.1:26323041-26323060 | None:intergenic | 40.0% | |
| TCAGAACGATCATTGGACAA+TGG | - | chr5.1:26323254-26323273 | None:intergenic | 40.0% | |
| TGAAGGAAAGGATGTTGTGT+GGG | + | chr5.1:26323475-26323494 | MS.gene45116:CDS | 40.0% | |
| TGTGGAAGGACATTGGTATT+GGG | + | chr5.1:26322470-26322489 | MS.gene45116:CDS | 40.0% | |
| TTACCATTTGAGTGAAGCCT+TGG | + | chr5.1:26323184-26323203 | MS.gene45116:CDS | 40.0% | |
| TTGAAGGAAAGGATGTTGTG+TGG | + | chr5.1:26323474-26323493 | MS.gene45116:CDS | 40.0% | |
| TTGTGGAAGGACATTGGTAT+TGG | + | chr5.1:26322469-26322488 | MS.gene45116:CDS | 40.0% | |
| ! | ACTAGGGTTCCTTTTGTACA+TGG | - | chr5.1:26322362-26322381 | None:intergenic | 40.0% |
| ! | ATGGTTGATTCAATACCGGA+AGG | - | chr5.1:26322573-26322592 | None:intergenic | 40.0% |
| ! | CAAGGAATCATTTGAAGCCA+AGG | - | chr5.1:26323204-26323223 | None:intergenic | 40.0% |
| ! | GGTTCCTTTTGTACATGGAA+AGG | - | chr5.1:26322357-26322376 | None:intergenic | 40.0% |
| ! | TACCATTTTCCAACAACGAC+TGG | - | chr5.1:26323278-26323297 | None:intergenic | 40.0% |
| ! | TGAATTTAAGCTTGCTTGGC+TGG | - | chr5.1:26322958-26322977 | None:intergenic | 40.0% |
| ! | TTTGGATGGATTTCTGGGAA+TGG | + | chr5.1:26323605-26323624 | MS.gene45116:CDS | 40.0% |
| !! | CTCTTTCTTTGGTTTGTGGA+AGG | + | chr5.1:26322456-26322475 | MS.gene45116:CDS | 40.0% |
| !! | TTTGGTTTGTGGAAGGACAT+TGG | + | chr5.1:26322463-26322482 | MS.gene45116:CDS | 40.0% |
| !!! | TTTTGGTTTTCATGCCGAGT+CGG | + | chr5.1:26323088-26323107 | MS.gene45116:CDS | 40.0% |
| AAGCCAAGGCTTCACTCAAA+TGG | - | chr5.1:26323190-26323209 | None:intergenic | 45.0% | |
| AGAAGGAAGGGGAAGAATCA+AGG | + | chr5.1:26322614-26322633 | MS.gene45116:CDS | 45.0% | |
| ATCTGGTAGCTTAGAACGCA+AGG | - | chr5.1:26323222-26323241 | None:intergenic | 45.0% | |
| ! | GACTGGTTCAGAACGATCAT+TGG | - | chr5.1:26323261-26323280 | None:intergenic | 45.0% |
| ! | TTTTGTGTAGGTAGCTCAGC+TGG | + | chr5.1:26322679-26322698 | MS.gene45116:intron | 45.0% |
| !! | GATTGGTTGATGGAGTTTCG+TGG | + | chr5.1:26323507-26323526 | MS.gene45116:CDS | 45.0% |
| !! | GTGGATCTGAAAGAGCACTA+GGG | - | chr5.1:26322378-26322397 | None:intergenic | 45.0% |
| ACCACAAGGAGTTCCATCCA+AGG | - | chr5.1:26323117-26323136 | None:intergenic | 50.0% | |
| AGTTGACGCTCGAGCAAAGA+TGG | + | chr5.1:26323366-26323385 | MS.gene45116:CDS | 50.0% | |
| CCACCATCAGGTCCAAATTC+AGG | + | chr5.1:26322397-26322416 | MS.gene45116:CDS | 50.0% | |
| CCTGAATTTGGACCTGATGG+TGG | - | chr5.1:26322400-26322419 | None:intergenic | 50.0% | |
| CTTTCAGATCCACCACCATC+AGG | + | chr5.1:26322385-26322404 | MS.gene45116:CDS | 50.0% | |
| GTTGACGCTCGAGCAAAGAT+GGG | + | chr5.1:26323367-26323386 | MS.gene45116:CDS | 50.0% | |
| ! | CGTTCTGAACCAGTCGTTGT+TGG | + | chr5.1:26323266-26323285 | MS.gene45116:CDS | 50.0% |
| !! | GAATTTGGACCTGATGGTGG+TGG | - | chr5.1:26322397-26322416 | None:intergenic | 50.0% |
| !! | GGTGGATCTGAAAGAGCACT+AGG | - | chr5.1:26322379-26322398 | None:intergenic | 50.0% |
| GCCTTGGATGGAACTCCTTG+TGG | + | chr5.1:26323113-26323132 | MS.gene45116:CDS | 55.0% | |
| TCCATCCAAGGCAACCGACT+CGG | - | chr5.1:26323105-26323124 | None:intergenic | 55.0% | |
| TCATGCCGAGTCGGTTGCCT+TGG | + | chr5.1:26323097-26323116 | MS.gene45116:CDS | 60.0% | |
| GCCGAGTCGGTTGCCTTGGA+TGG | + | chr5.1:26323101-26323120 | MS.gene45116:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 26322337 | 26323796 | 26322337 | ID=MS.gene45116 |
| chr5.1 | mRNA | 26322337 | 26323796 | 26322337 | ID=MS.gene45116.t1;Parent=MS.gene45116 |
| chr5.1 | exon | 26322337 | 26322635 | 26322337 | ID=MS.gene45116.t1.exon1;Parent=MS.gene45116.t1 |
| chr5.1 | CDS | 26322337 | 26322635 | 26322337 | ID=cds.MS.gene45116.t1;Parent=MS.gene45116.t1 |
| chr5.1 | exon | 26322959 | 26323796 | 26322959 | ID=MS.gene45116.t1.exon2;Parent=MS.gene45116.t1 |
| chr5.1 | CDS | 26322959 | 26323796 | 26322959 | ID=cds.MS.gene45116.t1;Parent=MS.gene45116.t1 |
| Gene Sequence |
| Protein sequence |
