Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45114.t1 | XP_013453735.1 | 93.6 | 328 | 19 | 1 | 1 | 328 | 1 | 326 | 8.70E-179 | 636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45114.t1 | A0A072UEA2 | 93.6 | 328 | 19 | 1 | 1 | 328 | 1 | 326 | 6.3e-179 | 636.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68292 | MS.gene45114 | PPI |
| MS.gene45114 | MS.gene45120 | PPI |
| MS.gene68297 | MS.gene45114 | PPI |
| MS.gene45114 | MS.gene45118 | PPI |
| MS.gene027540 | MS.gene45114 | PPI |
| MS.gene43935 | MS.gene45114 | PPI |
| MS.gene45114 | MS.gene78745 | PPI |
| MS.gene027543 | MS.gene45114 | PPI |
| MS.gene45117 | MS.gene45114 | PPI |
| MS.gene45114 | MS.gene027538 | PPI |
| MS.gene45114 | MS.gene027536 | PPI |
| MS.gene027534 | MS.gene45114 | PPI |
| MS.gene027537 | MS.gene45114 | PPI |
| MS.gene45114 | MS.gene027539 | PPI |
| MS.gene45114 | MS.gene027540 | PPI |
| MS.gene68295 | MS.gene45114 | PPI |
| MS.gene45114 | MS.gene042700 | PPI |
| MS.gene045965 | MS.gene45114 | PPI |
| MS.gene45114 | MS.gene68298 | PPI |
| MS.gene027544 | MS.gene45114 | PPI |
| MS.gene45114 | MS.gene43936 | PPI |
| MS.gene45116 | MS.gene45114 | PPI |
| MS.gene68293 | MS.gene45114 | PPI |
| MS.gene45114 | MS.gene45119 | PPI |
| MS.gene45114 | MS.gene68292 | PPI |
| MS.gene027539 | MS.gene45114 | PPI |
| MS.gene027535 | MS.gene45114 | PPI |
| MS.gene45114 | MS.gene027543 | PPI |
| MS.gene45115 | MS.gene45114 | PPI |
| MS.gene45114 | MS.gene053932 | PPI |
| MS.gene68296 | MS.gene45114 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45114.t1 | MTR_5g035665 | 93.598 | 328 | 19 | 1 | 1 | 328 | 1 | 326 | 0.0 | 645 |
| MS.gene45114.t1 | MTR_5g035690 | 86.804 | 341 | 36 | 2 | 1 | 334 | 1 | 339 | 0.0 | 607 |
| MS.gene45114.t1 | MTR_5g035750 | 83.333 | 336 | 46 | 2 | 1 | 328 | 1 | 334 | 0.0 | 579 |
| MS.gene45114.t1 | MTR_5g035670 | 85.671 | 328 | 47 | 0 | 1 | 328 | 1 | 328 | 0.0 | 579 |
| MS.gene45114.t1 | MTR_5g035760 | 76.524 | 328 | 76 | 1 | 1 | 328 | 1 | 327 | 0.0 | 514 |
| MS.gene45114.t1 | MTR_6g472110 | 49.563 | 343 | 154 | 7 | 1 | 325 | 1 | 342 | 2.18e-100 | 303 |
| MS.gene45114.t1 | MTR_6g016660 | 41.908 | 346 | 182 | 8 | 1 | 328 | 1 | 345 | 7.31e-79 | 248 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45114.t1 | AT1G13510 | 45.294 | 340 | 164 | 11 | 1 | 331 | 1 | 327 | 3.91e-89 | 273 |
| MS.gene45114.t1 | AT1G13530 | 46.957 | 345 | 160 | 10 | 1 | 333 | 1 | 334 | 9.16e-86 | 265 |
| MS.gene45114.t1 | AT1G13490 | 46.828 | 331 | 158 | 8 | 1 | 322 | 1 | 322 | 4.82e-85 | 263 |
| MS.gene45114.t1 | AT1G13480 | 44.311 | 334 | 165 | 8 | 1 | 321 | 1 | 326 | 6.34e-84 | 260 |
| MS.gene45114.t1 | AT1G13520 | 45.238 | 336 | 160 | 10 | 1 | 321 | 1 | 327 | 1.28e-83 | 259 |
| MS.gene45114.t1 | AT1G13540 | 44.575 | 341 | 166 | 11 | 1 | 331 | 1 | 328 | 8.24e-81 | 252 |
| MS.gene45114.t1 | AT1G13470 | 44.380 | 347 | 168 | 10 | 1 | 335 | 1 | 334 | 1.05e-77 | 244 |
| MS.gene45114.t1 | AT1G61600 | 39.665 | 358 | 183 | 8 | 1 | 328 | 1 | 355 | 7.92e-76 | 241 |
| MS.gene45114.t1 | AT1G13490 | 44.242 | 330 | 149 | 8 | 1 | 322 | 1 | 303 | 6.70e-75 | 236 |
| MS.gene45114.t1 | AT1G13500 | 43.143 | 350 | 177 | 11 | 1 | 338 | 1 | 340 | 1.02e-72 | 231 |
| MS.gene45114.t1 | AT1G13550 | 42.857 | 343 | 168 | 12 | 1 | 326 | 1 | 332 | 1.56e-71 | 229 |
Find 89 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | 5.1:-26310216 | None:intergenic |
| AACCTAACGCTTGGCTTAAT+TGG | 0.212270 | 5.1:-26311518 | None:intergenic |
| TTCAAGTTATCTTGTGATAT+TGG | 0.212889 | 5.1:+26310221 | MS.gene45114:CDS |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5.1:-26311633 | None:intergenic |
| AAAATTGAAAAGTTGAAATT+TGG | 0.220039 | 5.1:-26311567 | None:intergenic |
| CCTGGGTTATTGAGGGAAAA+AGG | 0.234439 | 5.1:+26311462 | MS.gene45114:CDS |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5.1:+26311647 | MS.gene45114:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5.1:+26311878 | MS.gene45114:CDS |
| TGCTCATTTGGCGACGGCAC+TGG | 0.333435 | 5.1:+26312340 | MS.gene45114:CDS |
| AAGCCTAATTCCTGCTCATT+TGG | 0.342544 | 5.1:+26312328 | MS.gene45114:CDS |
| GACAATGGTTGATTTAATAC+TGG | 0.344310 | 5.1:-26310384 | None:intergenic |
| TTGGCTTAATTGGTAGTTGC+GGG | 0.349143 | 5.1:-26311508 | None:intergenic |
| TGAAGGAAAGGATGCTGTTT+GGG | 0.370832 | 5.1:+26311806 | MS.gene45114:CDS |
| TCGCCAAATGAGCAGGAATT+AGG | 0.371769 | 5.1:-26312331 | None:intergenic |
| TCAAAGGAAAATGAAAATAG+TGG | 0.372912 | 5.1:+26311732 | MS.gene45114:CDS |
| AAATGGGAACAAGAAAGATT+TGG | 0.385031 | 5.1:+26311918 | MS.gene45114:CDS |
| TTGAAGGAAAGGATGCTGTT+TGG | 0.397380 | 5.1:+26311805 | MS.gene45114:CDS |
| GAAAGATTTGGATGGAATGC+TGG | 0.400495 | 5.1:+26311930 | MS.gene45114:CDS |
| GCTCAAACTTACTCTTGCTT+TGG | 0.406381 | 5.1:+26310252 | MS.gene45114:CDS |
| TGATGTTAAACCAAGACCTT+TGG | 0.408050 | 5.1:+26311353 | MS.gene45114:CDS |
| CCTTTGAACTTGTACTAGCT+TGG | 0.411881 | 5.1:-26311290 | None:intergenic |
| TTGAAGGGCTCCAAAGGTCT+TGG | 0.418581 | 5.1:-26311363 | None:intergenic |
| GCCCTTCAATGATTATCAAC+AGG | 0.423563 | 5.1:+26311377 | MS.gene45114:CDS |
| AGCATCCTTTCCTTCAACCT+TGG | 0.423840 | 5.1:-26311799 | None:intergenic |
| GCTTCAGATGGAATTCCTCC+TGG | 0.427749 | 5.1:+26311444 | MS.gene45114:CDS |
| AAGTTATTGAAGGAATGAAA+TGG | 0.430511 | 5.1:+26311901 | MS.gene45114:CDS |
| GGTGGGTCTGAAAGAGCATT+AGG | 0.433017 | 5.1:-26310183 | None:intergenic |
| TGAACATAGCTTCTTCACTT+AGG | 0.441565 | 5.1:-26310359 | None:intergenic |
| ACAGAAGTTGCCAAGGTTGA+AGG | 0.444547 | 5.1:+26311789 | MS.gene45114:CDS |
| AGTTATTGAAGGAATGAAAT+GGG | 0.445708 | 5.1:+26311902 | MS.gene45114:CDS |
| GAACATAGCTTCTTCACTTA+GGG | 0.448913 | 5.1:-26310358 | None:intergenic |
| AGAAGGAAGGGAAAGAATCA+AGG | 0.451579 | 5.1:+26310429 | MS.gene45114:CDS |
| GAATTTGGCCCTGATGGTGG+TGG | 0.453647 | 5.1:-26310201 | None:intergenic |
| CTTTCAGACCCACCACCATC+AGG | 0.453725 | 5.1:+26310192 | MS.gene45114:CDS |
| GATGAAAATAGATTGCTTGA+TGG | 0.454252 | 5.1:+26311828 | MS.gene45114:CDS |
| TTAACCATCATTATTTCAGC+AGG | 0.457714 | 5.1:+26310327 | MS.gene45114:CDS |
| GAATTCCTCCTGGGTTATTG+AGG | 0.466329 | 5.1:+26311454 | MS.gene45114:CDS |
| TTGAGTTTGGAAGTTATTGA+AGG | 0.477504 | 5.1:+26311891 | MS.gene45114:CDS |
| GATTGCTTGATGGAGTGTTA+TGG | 0.478512 | 5.1:+26311838 | MS.gene45114:CDS |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5.1:+26311867 | MS.gene45114:CDS |
| AACCTGTTGATAATCATTGA+AGG | 0.481565 | 5.1:-26311379 | None:intergenic |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.1:+26311633 | MS.gene45114:CDS |
| TAGTACAAGTTCAAAGGAAG+AGG | 0.503151 | 5.1:+26311296 | MS.gene45114:CDS |
| AATTCCTCCTGGGTTATTGA+GGG | 0.509022 | 5.1:+26311455 | MS.gene45114:CDS |
| ATTTGGATGGAATGCTGGGA+AGG | 0.512527 | 5.1:+26311935 | MS.gene45114:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.512950 | 5.1:+26310416 | MS.gene45114:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.514101 | 5.1:-26310200 | None:intergenic |
| CCAAGCTAGTACAAGTTCAA+AGG | 0.520879 | 5.1:+26311290 | MS.gene45114:CDS |
| TGTTCTGAATCAGTGGTTGT+TGG | 0.524665 | 5.1:+26311597 | MS.gene45114:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.530706 | 5.1:+26311936 | MS.gene45114:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.530832 | 5.1:+26310412 | MS.gene45114:CDS |
| AAAGATTTGGATGGAATGCT+GGG | 0.532701 | 5.1:+26311931 | MS.gene45114:CDS |
| AGTGCCGTCGCCAAATGAGC+AGG | 0.536293 | 5.1:-26312338 | None:intergenic |
| GAAAATGAAAATAGTGGAGA+AGG | 0.537296 | 5.1:+26311738 | MS.gene45114:CDS |
| GAAATAATCAAGAAGAGTCA+TGG | 0.542478 | 5.1:+26311402 | MS.gene45114:CDS |
| TACCAATTAAGCCAAGCGTT+AGG | 0.542546 | 5.1:+26311516 | MS.gene45114:CDS |
| CATAGCTTCTTCACTTAGGG+TGG | 0.542657 | 5.1:-26310355 | None:intergenic |
| ATTTGGTAGCTTCGAACGCA+AGG | 0.544069 | 5.1:-26311550 | None:intergenic |
| TTCACCTGCTGAAATAATGA+TGG | 0.546574 | 5.1:-26310331 | None:intergenic |
| CTTGGCTTAATTGGTAGTTG+CGG | 0.547379 | 5.1:-26311509 | None:intergenic |
| AGCTAACACTTGAGCAACGA+TGG | 0.552335 | 5.1:+26311697 | MS.gene45114:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | 5.1:-26310207 | None:intergenic |
| GAAGGAAGGGAAAGAATCAA+GGG | 0.557983 | 5.1:+26310430 | MS.gene45114:CDS |
| ATTCGCAGAAGAAGAAGAGG+TGG | 0.558288 | 5.1:-26312410 | None:intergenic |
| ACCTGTTGATAATCATTGAA+GGG | 0.560629 | 5.1:-26311378 | None:intergenic |
| AAGATTCGCAGAAGAAGAAG+AGG | 0.561238 | 5.1:-26312413 | None:intergenic |
| TACTATGTTATAAGAAGGAA+GGG | 0.561528 | 5.1:+26310417 | MS.gene45114:CDS |
| CTTCAGATGGAATTCCTCCT+GGG | 0.571560 | 5.1:+26311445 | MS.gene45114:CDS |
| AATCATTTGAACCTAACGCT+TGG | 0.573053 | 5.1:-26311527 | None:intergenic |
| GCAAAATCTATCGCTTCAGA+TGG | 0.576413 | 5.1:+26311432 | MS.gene45114:CDS |
| GGGAACAAGAAAGATTTGGA+TGG | 0.577539 | 5.1:+26311922 | MS.gene45114:CDS |
| AGTTGCCAAGGTTGAAGGAA+AGG | 0.583011 | 5.1:+26311794 | MS.gene45114:CDS |
| TAATGATTGTTCTGAATCAG+TGG | 0.585316 | 5.1:+26311590 | MS.gene45114:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.1:+26311629 | MS.gene45114:CDS |
| AATGAAAATAGTGGAGAAGG+TGG | 0.590819 | 5.1:+26311741 | MS.gene45114:CDS |
| GTGCAAGAACAATAGAGTCA+AGG | 0.591442 | 5.1:+26310278 | MS.gene45114:CDS |
| TAATCATTGAAGGGCTCCAA+AGG | 0.594177 | 5.1:-26311369 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | 5.1:-26310204 | None:intergenic |
| AATTCCTGCTCATTTGGCGA+CGG | 0.610111 | 5.1:+26312334 | MS.gene45114:CDS |
| AAGGTCTTGGTTTAACATCA+CGG | 0.612277 | 5.1:-26311350 | None:intergenic |
| TCGTAGTGAAATCAGAGAAG+AGG | 0.613954 | 5.1:-26312385 | None:intergenic |
| GATTCAAACAGAAGTTGCCA+AGG | 0.618472 | 5.1:+26311782 | MS.gene45114:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.623216 | 5.1:+26311604 | MS.gene45114:CDS |
| TGGCTTAATTGGTAGTTGCG+GGG | 0.631094 | 5.1:-26311507 | None:intergenic |
| GGCTTCGATTGAGATTGAAG+AGG | 0.635749 | 5.1:-26312310 | None:intergenic |
| TTTCAGACCCACCACCATCA+GGG | 0.636827 | 5.1:+26310193 | MS.gene45114:CDS |
| AAAACTACAACATAAACATG+TGG | 0.651413 | 5.1:-26311325 | None:intergenic |
| GCTAACACTTGAGCAACGAT+GGG | 0.652461 | 5.1:+26311698 | MS.gene45114:CDS |
| TAGTAGCGATTAGAAGACAA+TGG | 0.682657 | 5.1:-26310399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAATAAGTAATAG+TGG | + | chr5.1:26311228-26311247 | MS.gene45114:intron | 10.0% |
| !! | TTTAAACAAAATCAATTATA+AGG | + | chr5.1:26310811-26310830 | MS.gene45114:intron | 10.0% |
| !! | AAAATTGAAAAGTTGAAATT+TGG | - | chr5.1:26311570-26311589 | None:intergenic | 15.0% |
| !! | ATTAATTGAATTGTATGTTT+CGG | - | chr5.1:26312158-26312177 | None:intergenic | 15.0% |
| !! | TCTTTCATTGTTAAAAATTA+AGG | - | chr5.1:26310618-26310637 | None:intergenic | 15.0% |
| !! | TTAAACATTAAAAACAATCA+TGG | - | chr5.1:26310796-26310815 | None:intergenic | 15.0% |
| !! | ACAAAATCAATTATAAGGTT+TGG | + | chr5.1:26310816-26310835 | MS.gene45114:intron | 20.0% |
| !! | TCATTGTTAAAAATTAAGGA+GGG | - | chr5.1:26310614-26310633 | None:intergenic | 20.0% |
| !! | TGAAATAGATGCTTAAATTT+AGG | - | chr5.1:26310992-26311011 | None:intergenic | 20.0% |
| !! | TTCATTGTTAAAAATTAAGG+AGG | - | chr5.1:26310615-26310634 | None:intergenic | 20.0% |
| !!! | TATAGTTTTTGTCAAAATTG+TGG | + | chr5.1:26311143-26311162 | MS.gene45114:intron | 20.0% |
| !!! | TTTTCCCGAAAATTAAATTT+GGG | + | chr5.1:26310652-26310671 | MS.gene45114:intron | 20.0% |
| !!! | TTTTTCCCGAAAATTAAATT+TGG | + | chr5.1:26310651-26310670 | MS.gene45114:intron | 20.0% |
| ! | AAAACTACAACATAAACATG+TGG | - | chr5.1:26311328-26311347 | None:intergenic | 25.0% |
| ! | AAGTTATTGAAGGAATGAAA+TGG | + | chr5.1:26311901-26311920 | MS.gene45114:CDS | 25.0% |
| ! | AATTAACCGAACCTTTATAT+TGG | + | chr5.1:26312043-26312062 | MS.gene45114:intron | 25.0% |
| ! | ACATTGTCTCAATATATCAT+TGG | + | chr5.1:26310761-26310780 | MS.gene45114:intron | 25.0% |
| ! | AGTTATTGAAGGAATGAAAT+GGG | + | chr5.1:26311902-26311921 | MS.gene45114:CDS | 25.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5.1:26310219-26310238 | None:intergenic | 25.0% |
| ! | CAATATCCAATATAAAGGTT+CGG | - | chr5.1:26312052-26312071 | None:intergenic | 25.0% |
| ! | CAGTTCAATATCCAATATAA+AGG | - | chr5.1:26312057-26312076 | None:intergenic | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5.1:26311647-26311666 | MS.gene45114:CDS | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5.1:26310417-26310436 | MS.gene45114:CDS | 25.0% |
| ! | TAGCATGAAATGGAATTTAT+GGG | - | chr5.1:26310586-26310605 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAATGAAAATAG+TGG | + | chr5.1:26311732-26311751 | MS.gene45114:CDS | 25.0% |
| ! | TTAGCATGAAATGGAATTTA+TGG | - | chr5.1:26310587-26310606 | None:intergenic | 25.0% |
| ! | TTTCCCGAAAATTAAATTTG+GGG | + | chr5.1:26310653-26310672 | MS.gene45114:intron | 25.0% |
| !! | AAACATGCGCTAAAATTTTA+AGG | + | chr5.1:26311203-26311222 | MS.gene45114:intron | 25.0% |
| !! | AATTATAAGGTTTGGTCTAA+TGG | + | chr5.1:26310824-26310843 | MS.gene45114:intron | 25.0% |
| !! | AGATGCTTAAATTTAGGATT+AGG | - | chr5.1:26310986-26311005 | None:intergenic | 25.0% |
| !! | ATGCTTAAATTTAGGATTAG+GGG | - | chr5.1:26310984-26311003 | None:intergenic | 25.0% |
| !! | ATGGTTAAATTTTTGTTCTG+AGG | - | chr5.1:26310315-26310334 | None:intergenic | 25.0% |
| !! | ATTAGGATTCTTTTTGTACA+TGG | - | chr5.1:26310169-26310188 | None:intergenic | 25.0% |
| !! | GATGCTTAAATTTAGGATTA+GGG | - | chr5.1:26310985-26311004 | None:intergenic | 25.0% |
| !! | TGGTTAAATTTTTGTTCTGA+GGG | - | chr5.1:26310314-26310333 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+TGG | + | chr5.1:26310221-26310240 | MS.gene45114:CDS | 25.0% |
| !!! | AATCCCCCAAATTTAATTTT+CGG | - | chr5.1:26310660-26310679 | None:intergenic | 25.0% |
| !!! | GGTTAACTGAATTTTGATAA+CGG | - | chr5.1:26312118-26312137 | None:intergenic | 25.0% |
| AAATGGGAACAAGAAAGATT+TGG | + | chr5.1:26311918-26311937 | MS.gene45114:CDS | 30.0% | |
| AAGCAAAGAAAACTATACGT+TGG | - | chr5.1:26310487-26310506 | None:intergenic | 30.0% | |
| ACAAGTGAGAGTAACAAATA+GGG | + | chr5.1:26311962-26311981 | MS.gene45114:intron | 30.0% | |
| AGCAAAGAAAACTATACGTT+GGG | - | chr5.1:26310486-26310505 | None:intergenic | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5.1:26310412-26310431 | MS.gene45114:CDS | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5.1:26310416-26310435 | MS.gene45114:CDS | 30.0% | |
| GAAATAATCAAGAAGAGTCA+TGG | + | chr5.1:26311402-26311421 | MS.gene45114:CDS | 30.0% | |
| GATGAAAATAGATTGCTTGA+TGG | + | chr5.1:26311828-26311847 | MS.gene45114:CDS | 30.0% | |
| GTTCGATTTATGCTTGATTA+GGG | - | chr5.1:26312291-26312310 | None:intergenic | 30.0% | |
| TTAACCATCATTATTTCAGC+AGG | + | chr5.1:26310327-26310346 | MS.gene45114:CDS | 30.0% | |
| TTCCCGAAAATTAAATTTGG+GGG | + | chr5.1:26310654-26310673 | MS.gene45114:intron | 30.0% | |
| TTGAATTGTATGTTTCGGTT+CGG | - | chr5.1:26312153-26312172 | None:intergenic | 30.0% | |
| TTGAGTTTGGAAGTTATTGA+AGG | + | chr5.1:26311891-26311910 | MS.gene45114:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.1:26311629-26311648 | MS.gene45114:CDS | 30.0% | |
| ! | GAAAATGAAAATAGTGGAGA+AGG | + | chr5.1:26311738-26311757 | MS.gene45114:CDS | 30.0% |
| ! | GACAATGGTTGATTTAATAC+TGG | - | chr5.1:26310387-26310406 | None:intergenic | 30.0% |
| ! | TAATGATTGTTCTGAATCAG+TGG | + | chr5.1:26311590-26311609 | MS.gene45114:CDS | 30.0% |
| ! | TTAAATTTAGGATTAGGGGA+AGG | - | chr5.1:26310980-26310999 | None:intergenic | 30.0% |
| !! | AACCTGTTGATAATCATTGA+AGG | - | chr5.1:26311382-26311401 | None:intergenic | 30.0% |
| !! | AATTTTAGTATGGATCGGTT+CGG | - | chr5.1:26312027-26312046 | None:intergenic | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5.1:26311381-26311400 | None:intergenic | 30.0% |
| !! | AGGTTCGGTTAATTTTAGTA+TGG | - | chr5.1:26312037-26312056 | None:intergenic | 30.0% |
| !! | ATCCCCCAAATTTAATTTTC+GGG | - | chr5.1:26310659-26310678 | None:intergenic | 30.0% |
| !! | CGGTTAATTTTAGTATGGAT+CGG | - | chr5.1:26312032-26312051 | None:intergenic | 30.0% |
| !!! | AAATTTTTGTTCTGAGGGAA+AGG | - | chr5.1:26310309-26310328 | None:intergenic | 30.0% |
| !!! | ACTGAATTTTGATAACGGTT+CGG | - | chr5.1:26312113-26312132 | None:intergenic | 30.0% |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5.1:26311716-26311735 | MS.gene45114:CDS | 30.0% |
| AAAGATTTGGATGGAATGCT+GGG | + | chr5.1:26311931-26311950 | MS.gene45114:CDS | 35.0% | |
| AACCTCAAAAAACACTAGCA+TGG | - | chr5.1:26310890-26310909 | None:intergenic | 35.0% | |
| AAGAGGTGAAGAGTGAAATT+AGG | - | chr5.1:26312204-26312223 | None:intergenic | 35.0% | |
| AAGGTCTTGGTTTAACATCA+CGG | - | chr5.1:26311353-26311372 | None:intergenic | 35.0% | |
| AATCATTTGAACCTAACGCT+TGG | - | chr5.1:26311530-26311549 | None:intergenic | 35.0% | |
| AATGGTAAAAAGACAGGCTT+TGG | + | chr5.1:26310842-26310861 | MS.gene45114:intron | 35.0% | |
| ACACTAGCATGGTTTAAACT+CGG | - | chr5.1:26310879-26310898 | None:intergenic | 35.0% | |
| AGAGGTGAAGAGTGAAATTA+GGG | - | chr5.1:26312203-26312222 | None:intergenic | 35.0% | |
| AGAGTGAAATTCGATTGAAG+AGG | - | chr5.1:26312221-26312240 | None:intergenic | 35.0% | |
| CAAGTGAGAGTAACAAATAG+GGG | + | chr5.1:26311963-26311982 | MS.gene45114:intron | 35.0% | |
| CCAAAGCACATAATATTTCC+TGG | - | chr5.1:26310948-26310967 | None:intergenic | 35.0% | |
| CCAGGAAATATTATGTGCTT+TGG | + | chr5.1:26310945-26310964 | MS.gene45114:intron | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.1:26311633-26311652 | MS.gene45114:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.1:26311636-26311655 | None:intergenic | 35.0% | |
| CGATGAGTTTGGAAAAAGAA+AGG | + | chr5.1:26311091-26311110 | MS.gene45114:intron | 35.0% | |
| GAACATAGCTTCTTCACTTA+GGG | - | chr5.1:26310361-26310380 | None:intergenic | 35.0% | |
| GACAAGTGAGAGTAACAAAT+AGG | + | chr5.1:26311961-26311980 | MS.gene45114:intron | 35.0% | |
| GAGGGTTAATTAGCATGAAA+TGG | - | chr5.1:26310596-26310615 | None:intergenic | 35.0% | |
| GGTTCGATTTATGCTTGATT+AGG | - | chr5.1:26312292-26312311 | None:intergenic | 35.0% | |
| TAGTACAAGTTCAAAGGAAG+AGG | + | chr5.1:26311296-26311315 | MS.gene45114:CDS | 35.0% | |
| TAGTAGCGATTAGAAGACAA+TGG | - | chr5.1:26310402-26310421 | None:intergenic | 35.0% | |
| TGAACATAGCTTCTTCACTT+AGG | - | chr5.1:26310362-26310381 | None:intergenic | 35.0% | |
| TGATGTTAAACCAAGACCTT+TGG | + | chr5.1:26311353-26311372 | MS.gene45114:CDS | 35.0% | |
| TGGTCTAATGGTAAAAAGAC+AGG | + | chr5.1:26310836-26310855 | MS.gene45114:intron | 35.0% | |
| TTCACCTGCTGAAATAATGA+TGG | - | chr5.1:26310334-26310353 | None:intergenic | 35.0% | |
| ! | AATGAAAATAGTGGAGAAGG+TGG | + | chr5.1:26311741-26311760 | MS.gene45114:CDS | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5.1:26311867-26311886 | MS.gene45114:CDS | 35.0% |
| !! | ATTTTAGCGCATGTTTGAGT+TGG | - | chr5.1:26311199-26311218 | None:intergenic | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.1:26311878-26311897 | MS.gene45114:CDS | 35.0% |
| !! | TTTTAGCGCATGTTTGAGTT+GGG | - | chr5.1:26311198-26311217 | None:intergenic | 35.0% |
| !!! | AACCATGCTAGTGTTTTTTG+AGG | + | chr5.1:26310885-26310904 | MS.gene45114:intron | 35.0% |
| !!! | ATGCTAGTGTTTTTTGAGGT+TGG | + | chr5.1:26310889-26310908 | MS.gene45114:intron | 35.0% |
| !!! | ATTTTGATAACGGTTCGGTT+CGG | - | chr5.1:26312108-26312127 | None:intergenic | 35.0% |
| !!! | GTTTTGATTGTCGATGAGTT+TGG | + | chr5.1:26311080-26311099 | MS.gene45114:intron | 35.0% |
| AACCAAAAACCATTCCGAAC+CGG | + | chr5.1:26311997-26312016 | MS.gene45114:intron | 40.0% | |
| AACCTAACGCTTGGCTTAAT+TGG | - | chr5.1:26311521-26311540 | None:intergenic | 40.0% | |
| AAGATTCGCAGAAGAAGAAG+AGG | - | chr5.1:26312416-26312435 | None:intergenic | 40.0% | |
| AAGCCTAATTCCTGCTCATT+TGG | + | chr5.1:26312328-26312347 | MS.gene45114:CDS | 40.0% | |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.1:26311604-26311623 | MS.gene45114:CDS | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | + | chr5.1:26311455-26311474 | MS.gene45114:CDS | 40.0% | |
| AGAAGGAAGGGAAAGAATCA+AGG | + | chr5.1:26310429-26310448 | MS.gene45114:CDS | 40.0% | |
| AGACAATGTTTCGATGATCG+TGG | - | chr5.1:26310750-26310769 | None:intergenic | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | + | chr5.1:26311290-26311309 | MS.gene45114:CDS | 40.0% | |
| CCTTTGAACTTGTACTAGCT+TGG | - | chr5.1:26311293-26311312 | None:intergenic | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | + | chr5.1:26311463-26311482 | MS.gene45114:CDS | 40.0% | |
| GAAAGATTTGGATGGAATGC+TGG | + | chr5.1:26311930-26311949 | MS.gene45114:CDS | 40.0% | |
| GAAGGAAGGGAAAGAATCAA+GGG | + | chr5.1:26310430-26310449 | MS.gene45114:CDS | 40.0% | |
| GATTCAAACAGAAGTTGCCA+AGG | + | chr5.1:26311782-26311801 | MS.gene45114:CDS | 40.0% | |
| GCAAAATCTATCGCTTCAGA+TGG | + | chr5.1:26311432-26311451 | MS.gene45114:CDS | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5.1:26311377-26311396 | MS.gene45114:CDS | 40.0% | |
| GCTCAAACTTACTCTTGCTT+TGG | + | chr5.1:26310252-26310271 | MS.gene45114:CDS | 40.0% | |
| GGGAACAAGAAAGATTTGGA+TGG | + | chr5.1:26311922-26311941 | MS.gene45114:CDS | 40.0% | |
| GGTTCAGTGAATACTCACAA+AGG | - | chr5.1:26310927-26310946 | None:intergenic | 40.0% | |
| GTGCAAGAACAATAGAGTCA+AGG | + | chr5.1:26310278-26310297 | MS.gene45114:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5.1:26310210-26310229 | None:intergenic | 40.0% | |
| TAATCATTGAAGGGCTCCAA+AGG | - | chr5.1:26311372-26311391 | None:intergenic | 40.0% | |
| TACCAATTAAGCCAAGCGTT+AGG | + | chr5.1:26311516-26311535 | MS.gene45114:CDS | 40.0% | |
| TCGTAGTGAAATCAGAGAAG+AGG | - | chr5.1:26312388-26312407 | None:intergenic | 40.0% | |
| TGAGAGTAACAAATAGGGGT+GGG | + | chr5.1:26311967-26311986 | MS.gene45114:intron | 40.0% | |
| TTGAAGGAAAGGATGCTGTT+TGG | + | chr5.1:26311805-26311824 | MS.gene45114:CDS | 40.0% | |
| TTGTGAGTATTCACTGAACC+AGG | + | chr5.1:26310927-26310946 | MS.gene45114:intron | 40.0% | |
| ! | CTTGGCTTAATTGGTAGTTG+CGG | - | chr5.1:26311512-26311531 | None:intergenic | 40.0% |
| ! | GAGATTGGTTGAGTCATGAT+AGG | - | chr5.1:26311172-26311191 | None:intergenic | 40.0% |
| ! | GATTGCTTGATGGAGTGTTA+TGG | + | chr5.1:26311838-26311857 | MS.gene45114:CDS | 40.0% |
| ! | TGAAGGAAAGGATGCTGTTT+GGG | + | chr5.1:26311806-26311825 | MS.gene45114:CDS | 40.0% |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | + | chr5.1:26311597-26311616 | MS.gene45114:CDS | 40.0% |
| ! | TTGGCTTAATTGGTAGTTGC+GGG | - | chr5.1:26311511-26311530 | None:intergenic | 40.0% |
| !! | TTGTATGTTTCGGTTCGGTT+CGG | - | chr5.1:26312148-26312167 | None:intergenic | 40.0% |
| AATTCCTGCTCATTTGGCGA+CGG | + | chr5.1:26312334-26312353 | MS.gene45114:CDS | 45.0% | |
| ACAGAAGTTGCCAAGGTTGA+AGG | + | chr5.1:26311789-26311808 | MS.gene45114:CDS | 45.0% | |
| AGCATCCTTTCCTTCAACCT+TGG | - | chr5.1:26311802-26311821 | None:intergenic | 45.0% | |
| AGCTAACACTTGAGCAACGA+TGG | + | chr5.1:26311697-26311716 | MS.gene45114:CDS | 45.0% | |
| AGTTGCCAAGGTTGAAGGAA+AGG | + | chr5.1:26311794-26311813 | MS.gene45114:CDS | 45.0% | |
| ATTCGCAGAAGAAGAAGAGG+TGG | - | chr5.1:26312413-26312432 | None:intergenic | 45.0% | |
| ATTTGGATGGAATGCTGGGA+AGG | + | chr5.1:26311935-26311954 | MS.gene45114:CDS | 45.0% | |
| CATAGCTTCTTCACTTAGGG+TGG | - | chr5.1:26310358-26310377 | None:intergenic | 45.0% | |
| CCTGGGTTATTGAGGGAAAA+AGG | + | chr5.1:26311462-26311481 | MS.gene45114:CDS | 45.0% | |
| CTTCAGATGGAATTCCTCCT+GGG | + | chr5.1:26311445-26311464 | MS.gene45114:CDS | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | + | chr5.1:26311454-26311473 | MS.gene45114:CDS | 45.0% | |
| GCTAACACTTGAGCAACGAT+GGG | + | chr5.1:26311698-26311717 | MS.gene45114:CDS | 45.0% | |
| GGCTTCGATTGAGATTGAAG+AGG | - | chr5.1:26312313-26312332 | None:intergenic | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | + | chr5.1:26311466-26311485 | MS.gene45114:CDS | 45.0% | |
| GTGAGAGTAACAAATAGGGG+TGG | + | chr5.1:26311966-26311985 | MS.gene45114:intron | 45.0% | |
| TCGATGATCGTGGTTCAACT+AGG | - | chr5.1:26310740-26310759 | None:intergenic | 45.0% | |
| TCGCCAAATGAGCAGGAATT+AGG | - | chr5.1:26312334-26312353 | None:intergenic | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5.1:26311936-26311955 | MS.gene45114:CDS | 45.0% | |
| ! | ATTTGGTAGCTTCGAACGCA+AGG | - | chr5.1:26311553-26311572 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | - | chr5.1:26311465-26311484 | None:intergenic | 45.0% |
| ! | CTGAAGCGATAGATTTTGCG+TGG | - | chr5.1:26311431-26311450 | None:intergenic | 45.0% |
| ! | TGGCTTAATTGGTAGTTGCG+GGG | - | chr5.1:26311510-26311529 | None:intergenic | 45.0% |
| ! | TTTTCCCTCAATAACCCAGG+AGG | - | chr5.1:26311462-26311481 | None:intergenic | 45.0% |
| !! | AAGACAGGCTTTGGACTTAG+AGG | + | chr5.1:26310851-26310870 | MS.gene45114:intron | 45.0% |
| !! | GTTTGAGTTGGGTGTGAGAT+TGG | - | chr5.1:26311187-26311206 | None:intergenic | 45.0% |
| !! | TATGGATCGGTTCGGTTAAC+CGG | - | chr5.1:26312019-26312038 | None:intergenic | 45.0% |
| !!! | AACCGGTTCGGAATGGTTTT+TGG | - | chr5.1:26312002-26312021 | None:intergenic | 45.0% |
| !! | TTAAATAAATTGAATATTAT+AGG | + | chr5.1:26310533-26310552 | MS.gene45114:intron | 5.0% |
| CTTGAATTTGGCCCTGATGG+TGG | - | chr5.1:26310207-26310226 | None:intergenic | 50.0% | |
| GCTTCAGATGGAATTCCTCC+TGG | + | chr5.1:26311444-26311463 | MS.gene45114:CDS | 50.0% | |
| TTGAAGGGCTCCAAAGGTCT+TGG | - | chr5.1:26311366-26311385 | None:intergenic | 50.0% | |
| TTTCAGACCCACCACCATCA+GGG | + | chr5.1:26310193-26310212 | MS.gene45114:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5.1:26310203-26310222 | None:intergenic | 50.0% |
| !! | ATCGGTTCGGTTAACCGGTT+CGG | - | chr5.1:26312014-26312033 | None:intergenic | 50.0% |
| !! | GGTGGGTCTGAAAGAGCATT+AGG | - | chr5.1:26310186-26310205 | None:intergenic | 50.0% |
| !! | TTCGGTTAACCGGTTCGGAA+TGG | - | chr5.1:26312009-26312028 | None:intergenic | 50.0% |
| CTTTCAGACCCACCACCATC+AGG | + | chr5.1:26310192-26310211 | MS.gene45114:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5.1:26310204-26310223 | None:intergenic | 55.0% |
| !! | TCGGTTCGGTTCGGTACGTA+TGG | - | chr5.1:26312139-26312158 | None:intergenic | 55.0% |
| AGTGCCGTCGCCAAATGAGC+AGG | - | chr5.1:26312341-26312360 | None:intergenic | 60.0% | |
| TGCTCATTTGGCGACGGCAC+TGG | + | chr5.1:26312340-26312359 | MS.gene45114:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 26310144 | 26312442 | 26310144 | ID=MS.gene45114 |
| chr5.1 | mRNA | 26310144 | 26312442 | 26310144 | ID=MS.gene45114.t1;Parent=MS.gene45114 |
| chr5.1 | exon | 26310144 | 26310451 | 26310144 | ID=MS.gene45114.t1.exon1;Parent=MS.gene45114.t1 |
| chr5.1 | CDS | 26310144 | 26310451 | 26310144 | ID=cds.MS.gene45114.t1;Parent=MS.gene45114.t1 |
| chr5.1 | exon | 26311290 | 26311965 | 26311290 | ID=MS.gene45114.t1.exon2;Parent=MS.gene45114.t1 |
| chr5.1 | CDS | 26311290 | 26311965 | 26311290 | ID=cds.MS.gene45114.t1;Parent=MS.gene45114.t1 |
| chr5.1 | exon | 26312299 | 26312442 | 26312299 | ID=MS.gene45114.t1.exon3;Parent=MS.gene45114.t1 |
| chr5.1 | CDS | 26312299 | 26312442 | 26312299 | ID=cds.MS.gene45114.t1;Parent=MS.gene45114.t1 |
| Gene Sequence |
| Protein sequence |
