Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027539.t1 | RHN55134.1 | 78.6 | 449 | 33 | 2 | 1 | 449 | 31 | 416 | 1.50E-196 | 695.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027539.t1 | G7K475 | 78.6 | 449 | 33 | 2 | 1 | 449 | 1 | 386 | 1.0e-196 | 695.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027539 | MS.gene45119 | PPI |
| MS.gene027540 | MS.gene027539 | PPI |
| MS.gene68296 | MS.gene027539 | PPI |
| MS.gene027539 | MS.gene68292 | PPI |
| MS.gene68292 | MS.gene027539 | PPI |
| MS.gene027543 | MS.gene027539 | PPI |
| MS.gene027539 | MS.gene027543 | PPI |
| MS.gene027539 | MS.gene053932 | PPI |
| MS.gene68297 | MS.gene027539 | PPI |
| MS.gene68295 | MS.gene027539 | PPI |
| MS.gene027539 | MS.gene45120 | PPI |
| MS.gene43935 | MS.gene027539 | PPI |
| MS.gene45117 | MS.gene027539 | PPI |
| MS.gene45114 | MS.gene027539 | PPI |
| MS.gene027539 | MS.gene45118 | PPI |
| MS.gene027544 | MS.gene027539 | PPI |
| MS.gene027534 | MS.gene027539 | PPI |
| MS.gene027537 | MS.gene027539 | PPI |
| MS.gene45116 | MS.gene027539 | PPI |
| MS.gene027539 | MS.gene78745 | PPI |
| MS.gene027539 | MS.gene027538 | PPI |
| MS.gene027539 | MS.gene027536 | PPI |
| MS.gene045965 | MS.gene027539 | PPI |
| MS.gene027539 | MS.gene027540 | PPI |
| MS.gene027539 | MS.gene042700 | PPI |
| MS.gene68293 | MS.gene027539 | PPI |
| MS.gene027539 | MS.gene45114 | PPI |
| MS.gene027539 | MS.gene68298 | PPI |
| MS.gene027535 | MS.gene027539 | PPI |
| MS.gene027539 | MS.gene43936 | PPI |
| MS.gene45115 | MS.gene027539 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027539.t1 | MTR_5g035690 | 72.506 | 451 | 57 | 4 | 1 | 449 | 1 | 386 | 0.0 | 638 |
| MS.gene027539.t1 | MTR_5g035665 | 91.883 | 308 | 25 | 0 | 142 | 449 | 72 | 379 | 0.0 | 588 |
| MS.gene027539.t1 | MTR_5g035665 | 79.747 | 79 | 16 | 0 | 1 | 79 | 1 | 79 | 2.09e-35 | 135 |
| MS.gene027539.t1 | MTR_5g035750 | 80.274 | 365 | 66 | 3 | 91 | 449 | 23 | 387 | 0.0 | 583 |
| MS.gene027539.t1 | MTR_5g035750 | 86.567 | 67 | 9 | 0 | 1 | 67 | 1 | 67 | 5.55e-33 | 129 |
| MS.gene027539.t1 | MTR_5g035670 | 77.077 | 349 | 70 | 4 | 106 | 449 | 38 | 381 | 0.0 | 531 |
| MS.gene027539.t1 | MTR_5g035670 | 92.537 | 67 | 5 | 0 | 1 | 67 | 1 | 67 | 1.55e-33 | 130 |
| MS.gene027539.t1 | MTR_5g035760 | 78.502 | 307 | 64 | 2 | 145 | 449 | 74 | 380 | 1.37e-175 | 496 |
| MS.gene027539.t1 | MTR_5g035760 | 81.250 | 64 | 12 | 0 | 1 | 64 | 1 | 64 | 3.28e-25 | 107 |
| MS.gene027539.t1 | MTR_6g472110 | 48.864 | 352 | 151 | 12 | 119 | 449 | 56 | 399 | 6.59e-97 | 297 |
| MS.gene027539.t1 | MTR_6g472110 | 53.030 | 66 | 31 | 0 | 1 | 66 | 1 | 66 | 8.14e-16 | 79.3 |
| MS.gene027539.t1 | MTR_6g016660 | 42.508 | 327 | 166 | 7 | 142 | 449 | 75 | 398 | 8.48e-76 | 242 |
| MS.gene027539.t1 | MTR_6g016660 | 45.588 | 68 | 35 | 1 | 1 | 66 | 1 | 68 | 7.96e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027539.t1 | AT1G13480 | 41.449 | 345 | 175 | 11 | 119 | 449 | 56 | 387 | 1.85e-75 | 241 |
| MS.gene027539.t1 | AT1G13480 | 50.746 | 67 | 33 | 0 | 1 | 67 | 1 | 67 | 5.47e-15 | 76.6 |
| MS.gene027539.t1 | AT1G13530 | 42.470 | 332 | 166 | 12 | 133 | 449 | 64 | 385 | 7.43e-75 | 239 |
| MS.gene027539.t1 | AT1G13530 | 50.000 | 66 | 33 | 0 | 1 | 66 | 1 | 66 | 2.69e-13 | 71.6 |
| MS.gene027539.t1 | AT1G13510 | 41.349 | 341 | 177 | 10 | 119 | 449 | 53 | 380 | 5.36e-74 | 237 |
| MS.gene027539.t1 | AT1G13510 | 51.429 | 70 | 31 | 2 | 1 | 67 | 1 | 70 | 4.36e-14 | 73.9 |
| MS.gene027539.t1 | AT1G13520 | 44.012 | 334 | 160 | 12 | 133 | 449 | 64 | 387 | 5.45e-74 | 237 |
| MS.gene027539.t1 | AT1G13520 | 53.030 | 66 | 31 | 0 | 1 | 66 | 1 | 66 | 1.90e-14 | 75.1 |
| MS.gene027539.t1 | AT1G13470 | 46.057 | 317 | 152 | 10 | 142 | 449 | 72 | 378 | 2.95e-73 | 235 |
| MS.gene027539.t1 | AT1G13490 | 44.545 | 330 | 159 | 11 | 133 | 449 | 64 | 382 | 2.96e-72 | 233 |
| MS.gene027539.t1 | AT1G13490 | 48.485 | 66 | 34 | 0 | 1 | 66 | 1 | 66 | 5.24e-14 | 73.9 |
| MS.gene027539.t1 | AT1G13540 | 43.293 | 328 | 163 | 10 | 132 | 449 | 67 | 381 | 4.23e-72 | 232 |
| MS.gene027539.t1 | AT1G13540 | 47.887 | 71 | 33 | 2 | 1 | 67 | 1 | 71 | 6.93e-13 | 70.5 |
| MS.gene027539.t1 | AT1G13500 | 44.277 | 332 | 159 | 13 | 133 | 449 | 66 | 386 | 5.29e-69 | 224 |
| MS.gene027539.t1 | AT1G61600 | 37.500 | 352 | 179 | 7 | 137 | 449 | 72 | 421 | 2.24e-65 | 216 |
| MS.gene027539.t1 | AT1G61600 | 44.304 | 79 | 40 | 2 | 1 | 77 | 1 | 77 | 4.90e-12 | 67.8 |
| MS.gene027539.t1 | AT1G13490 | 42.553 | 329 | 148 | 11 | 133 | 449 | 64 | 363 | 3.50e-64 | 211 |
| MS.gene027539.t1 | AT1G13490 | 48.485 | 66 | 34 | 0 | 1 | 66 | 1 | 66 | 4.61e-14 | 73.9 |
| MS.gene027539.t1 | AT1G13550 | 40.184 | 326 | 168 | 12 | 138 | 446 | 70 | 385 | 5.92e-62 | 206 |
| MS.gene027539.t1 | AT1G13550 | 56.250 | 64 | 28 | 0 | 1 | 64 | 1 | 64 | 4.05e-17 | 83.2 |
Find 109 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGAACAATCATTGAAAAT+TGG | 0.211604 | 5.4:-40677189 | None:intergenic |
| ATCACAAGATAACTTGAATT+TGG | 0.219309 | 5.4:-40676251 | None:intergenic |
| CCTTCCTTCACAAACATAAA+TGG | 0.225580 | 5.4:-40677240 | None:intergenic |
| AAAATTGGAAAGTTGAAATT+TGG | 0.232410 | 5.4:-40677174 | None:intergenic |
| CCTGGGTTATTGAGGGAAAA+AGG | 0.234439 | 5.4:+40677069 | MS.gene027539:CDS |
| AAGAAGGAAGGGGAAGTATC+TGG | 0.248156 | 5.4:+40676673 | MS.gene027539:CDS |
| GTAACAAAAGTTGAAGAATT+TGG | 0.252999 | 5.4:+40677573 | MS.gene027539:CDS |
| AGCCTAAAGCTTGGCTTAAA+TGG | 0.254543 | 5.4:-40677125 | None:intergenic |
| GAGGAGAATGGATACAAAAT+TGG | 0.267080 | 5.4:+40677653 | MS.gene027539:CDS |
| GCACAAACTTACTCTTGTTT+TGG | 0.306130 | 5.4:+40676287 | MS.gene027539:CDS |
| GCCTCTGATGGAATTCCTCC+TGG | 0.316217 | 5.4:+40677051 | MS.gene027539:CDS |
| TTCAAGTTATCTTGTGATAT+CGG | 0.316747 | 5.4:+40676256 | MS.gene027539:CDS |
| CGTCAAACTGGTTATTCATT+TGG | 0.324238 | 5.4:+40676491 | MS.gene027539:CDS |
| TCTGGTGTAAACCGTCAAAT+TGG | 0.326717 | 5.4:+40676539 | MS.gene027539:CDS |
| GAAAGGTGTTGGATTGAGTT+TGG | 0.337371 | 5.4:+40677479 | MS.gene027539:CDS |
| AGTGAAACTGGTTATTCATT+TGG | 0.347848 | 5.4:+40676401 | MS.gene027539:CDS |
| CGTCAAATTGGTTATTCATC+TGG | 0.351714 | 5.4:+40676551 | MS.gene027539:CDS |
| TTGAAGGGCTCCAAAGCTAT+TGG | 0.369259 | 5.4:-40676970 | None:intergenic |
| TGAAGGAAAGGATGCTGTTT+GGG | 0.370832 | 5.4:+40677407 | MS.gene027539:CDS |
| AAAGTTGAAATTTGGTAGCT+TGG | 0.373273 | 5.4:-40677166 | None:intergenic |
| TATTATTCATATTATTCATC+TGG | 0.375589 | 5.4:+40676371 | MS.gene027539:CDS |
| TTGGCTTAAATGGTAGTTGC+GGG | 0.384872 | 5.4:-40677115 | None:intergenic |
| GACAATGGTTGATTCAATAC+TGG | 0.394738 | 5.4:-40676629 | None:intergenic |
| CCTTTGAACTTGTATTAGCT+TGG | 0.394949 | 5.4:-40676897 | None:intergenic |
| AAATGGGAACAAAGAAGGTT+TGG | 0.394970 | 5.4:+40677519 | MS.gene027539:CDS |
| TTGAAGGAAAGGATGCTGTT+TGG | 0.397380 | 5.4:+40677406 | MS.gene027539:CDS |
| CACATCAAATTAGAAGCAAA+TGG | 0.398449 | 5.4:+40677700 | MS.gene027539:CDS |
| TGATGTTAAACCAATAGCTT+TGG | 0.399590 | 5.4:+40676960 | MS.gene027539:CDS |
| TCTGGTGTAAACAGTGAAAC+TGG | 0.402820 | 5.4:+40676389 | MS.gene027539:CDS |
| AAGTTATTCTTTGAGGAGAA+TGG | 0.403630 | 5.4:+40677641 | MS.gene027539:CDS |
| AGAAGGAAGGGGAAGTATCT+GGG | 0.414602 | 5.4:+40676674 | MS.gene027539:CDS |
| TTTGGTGTAAACAGTCAAAC+TGG | 0.418830 | 5.4:+40676419 | MS.gene027539:CDS |
| CTTTCAGATCCACCACCATC+AGG | 0.422039 | 5.4:+40676227 | MS.gene027539:CDS |
| TCTGGTGTAAACAGTCAAAC+TGG | 0.425313 | 5.4:+40676569 | MS.gene027539:CDS |
| CTTTCCAACAACCACTGATT+CGG | 0.426945 | 5.4:-40677208 | None:intergenic |
| ACTGAAGTTGCTAAGGTTGA+AGG | 0.427895 | 5.4:+40677390 | MS.gene027539:CDS |
| CGTCAAACTGGTTATTCATC+TGG | 0.429694 | 5.4:+40676521 | MS.gene027539:CDS |
| TTTGGTGTAAACCGTCAAAC+TGG | 0.430290 | 5.4:+40676509 | MS.gene027539:CDS |
| AGAAGGTTTGGATGGAATGC+TGG | 0.431581 | 5.4:+40677531 | MS.gene027539:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5.4:+40677304 | MS.gene027539:CDS |
| TACCATTTAAGCCAAGCTTT+AGG | 0.432191 | 5.4:+40677123 | MS.gene027539:CDS |
| AGTCAAACTGGTTATTCATC+TGG | 0.446224 | 5.4:+40676461 | MS.gene027539:CDS |
| CAAATGAATAACCAGTTTGA+CGG | 0.447162 | 5.4:-40676490 | None:intergenic |
| GCCCTTCAATGATTATCAAC+AGG | 0.448229 | 5.4:+40676984 | MS.gene027539:CDS |
| TCTGGTGTAAACCGTCAAAC+TGG | 0.453591 | 5.4:+40676479 | MS.gene027539:CDS |
| CAGATGAATAACCAATTTGA+CGG | 0.456220 | 5.4:-40676550 | None:intergenic |
| TGAATAATATGAATAATAGA+TGG | 0.458234 | 5.4:-40676366 | None:intergenic |
| TCGGGTGAAAACAGTCAAAC+TGG | 0.459314 | 5.4:+40676449 | MS.gene027539:CDS |
| GCAAAATCCGTTGCCTCTGA+TGG | 0.460171 | 5.4:+40677039 | MS.gene027539:CDS |
| GACTTCTTTCCATGTACAAA+AGG | 0.463091 | 5.4:+40676192 | MS.gene027539:CDS |
| TGGTTGAAAGTTATTCTTTG+AGG | 0.464463 | 5.4:+40677634 | MS.gene027539:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5.4:+40677429 | MS.gene027539:CDS |
| GAATTCCTCCTGGGTTATTG+AGG | 0.466329 | 5.4:+40677061 | MS.gene027539:CDS |
| TACCTGTTGATAATCATTGA+AGG | 0.466990 | 5.4:-40676986 | None:intergenic |
| GTTTGGATGGAATGCTGGGA+AGG | 0.467693 | 5.4:+40677536 | MS.gene027539:CDS |
| CAGATGAATAACCAGTTTGA+CGG | 0.469325 | 5.4:-40676520 | None:intergenic |
| TTAGCAACTTCAGTTTGAAT+CGG | 0.472026 | 5.4:-40677381 | None:intergenic |
| GAATTTGGCCCTGATGGTGG+TGG | 0.488919 | 5.4:-40676236 | None:intergenic |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.489041 | 5.4:+40677339 | MS.gene027539:CDS |
| GAAATTTAGTAGTTATGTGT+TGG | 0.494117 | 5.4:+40677614 | MS.gene027539:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.4:+40677240 | MS.gene027539:CDS |
| TGTTTGGGATGAAAATAGAT+TGG | 0.498350 | 5.4:+40677422 | MS.gene027539:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.507064 | 5.4:+40676657 | MS.gene027539:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.507438 | 5.4:+40677537 | MS.gene027539:CDS |
| CAGTCAAACTGGTTATTCAT+CGG | 0.508046 | 5.4:+40676430 | MS.gene027539:CDS |
| AATTCCTCCTGGGTTATTGA+GGG | 0.509022 | 5.4:+40677062 | MS.gene027539:CDS |
| AGTCAAACTGGTTATTCATC+GGG | 0.512495 | 5.4:+40676431 | MS.gene027539:CDS |
| TTTAAGAGTGTTGATGAGAA+AGG | 0.513298 | 5.4:+40677462 | MS.gene027539:CDS |
| CCTCTGATGGAATTCCTCCT+GGG | 0.518745 | 5.4:+40677052 | MS.gene027539:CDS |
| GGGAACAAAGAAGGTTTGGA+TGG | 0.521569 | 5.4:+40677523 | MS.gene027539:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.522008 | 5.4:+40676661 | MS.gene027539:CDS |
| CAATGAAATGGGAACAAAGA+AGG | 0.524360 | 5.4:+40677514 | MS.gene027539:CDS |
| ACATCAAATTAGAAGCAAAT+GGG | 0.528084 | 5.4:+40677701 | MS.gene027539:CDS |
| TAATACAAGTTCAAAGGAAG+AGG | 0.529363 | 5.4:+40676903 | MS.gene027539:CDS |
| GATTCAAACTGAAGTTGCTA+AGG | 0.530396 | 5.4:+40677383 | MS.gene027539:CDS |
| TACTATGTTATAAGAAGGAA+GGG | 0.531189 | 5.4:+40676662 | MS.gene027539:CDS |
| ATTTGGTAGCTTGGAACGCA+AGG | 0.531864 | 5.4:-40677157 | None:intergenic |
| AAGTTGTTGAGGCAATGAAA+TGG | 0.534687 | 5.4:+40677502 | MS.gene027539:CDS |
| AGTGTTGATGAGAAAGGTGT+TGG | 0.536253 | 5.4:+40677468 | MS.gene027539:CDS |
| AATTTGGTGGAACAAACAAA+TGG | 0.536388 | 5.4:+40677589 | MS.gene027539:CDS |
| CAATGATTGTTCCGAATCAG+TGG | 0.541309 | 5.4:+40677197 | MS.gene027539:CDS |
| ACCTGTTGATAATCATTGAA+GGG | 0.546054 | 5.4:-40676985 | None:intergenic |
| ACAAAAGTTGAAGAATTTGG+TGG | 0.548037 | 5.4:+40677576 | MS.gene027539:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | 5.4:-40676242 | None:intergenic |
| CCAAGCTAATACAAGTTCAA+AGG | 0.554728 | 5.4:+40676897 | MS.gene027539:CDS |
| GAAGGTTTGGATGGAATGCT+GGG | 0.561735 | 5.4:+40677532 | MS.gene027539:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.563048 | 5.4:+40677211 | MS.gene027539:CDS |
| AATCATTTGAGCCTAAAGCT+TGG | 0.566503 | 5.4:-40677134 | None:intergenic |
| TTATCTTGTGATATCGGATG+AGG | 0.567170 | 5.4:+40676262 | MS.gene027539:CDS |
| AGTTGTTGAGGCAATGAAAT+GGG | 0.574296 | 5.4:+40677503 | MS.gene027539:CDS |
| CTTGGCTTAAATGGTAGTTG+CGG | 0.576138 | 5.4:-40677116 | None:intergenic |
| AGTTGCTAAGGTTGAAGGAA+AGG | 0.576444 | 5.4:+40677395 | MS.gene027539:CDS |
| TGTTCCGAATCAGTGGTTGT+TGG | 0.577833 | 5.4:+40677204 | MS.gene027539:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.4:+40677236 | MS.gene027539:CDS |
| GAAGGAAGGGGAAGTATCTG+GGG | 0.586952 | 5.4:+40676675 | MS.gene027539:CDS |
| AGGAATTCCATCAGAGGCAA+CGG | 0.588713 | 5.4:-40677046 | None:intergenic |
| AAGGAAAATAGTGGAGAAGG+TGG | 0.602522 | 5.4:+40677342 | MS.gene027539:CDS |
| CCCAGGAGGAATTCCATCAG+AGG | 0.605151 | 5.4:-40677052 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | 5.4:-40676239 | None:intergenic |
| GGTGGATCTGAAAGAGCACT+AGG | 0.608877 | 5.4:-40676218 | None:intergenic |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5.4:+40677305 | MS.gene027539:CDS |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.614856 | 5.4:+40677491 | MS.gene027539:CDS |
| GAACATAGCTTCTTCACTGT+AGG | 0.624230 | 5.4:-40676603 | None:intergenic |
| TTTCAGATCCACCACCATCA+GGG | 0.624409 | 5.4:+40676228 | MS.gene027539:CDS |
| TCTTGTGATATCGGATGAGG+AGG | 0.644030 | 5.4:+40676265 | MS.gene027539:CDS |
| TGGCTTAAATGGTAGTTGCG+GGG | 0.644475 | 5.4:-40677114 | None:intergenic |
| AAAACCACAATAAAAGCATG+TGG | 0.665724 | 5.4:-40676932 | None:intergenic |
| TAGTAGCGATTCGAAGACAA+TGG | 0.670254 | 5.4:-40676644 | None:intergenic |
| ACTATGTTATAAGAAGGAAG+GGG | 0.684429 | 5.4:+40676663 | MS.gene027539:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTACAATATTCTTTGT+TGG | - | chr5.4:40676758-40676777 | None:intergenic | 15.0% |
| !! | GAAATAATCAAAAAAAGTTA+TGG | + | chr5.4:40677009-40677028 | MS.gene027539:CDS | 15.0% |
| !! | TATTATTCATATTATTCATC+TGG | + | chr5.4:40676371-40676390 | MS.gene027539:CDS | 15.0% |
| !! | TATTTACAATATTCTTTGTT+GGG | - | chr5.4:40676757-40676776 | None:intergenic | 15.0% |
| !! | TGAATAATATGAATAATAGA+TGG | - | chr5.4:40676369-40676388 | None:intergenic | 15.0% |
| !!! | AGACATAATTATATTTTTGT+TGG | + | chr5.4:40676779-40676798 | MS.gene027539:intron | 15.0% |
| !! | AAAATTGGAAAGTTGAAATT+TGG | - | chr5.4:40677177-40677196 | None:intergenic | 20.0% |
| !! | ATAGATTCATAATGTAATAG+TGG | + | chr5.4:40676835-40676854 | MS.gene027539:intron | 20.0% |
| !!! | ATTTTTTCAAAGGAAAATAG+TGG | + | chr5.4:40677333-40677352 | MS.gene027539:CDS | 20.0% |
| ! | ACATCAAATTAGAAGCAAAT+GGG | + | chr5.4:40677701-40677720 | MS.gene027539:CDS | 25.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5.4:40676254-40676273 | None:intergenic | 25.0% |
| ! | GAAATTTAGTAGTTATGTGT+TGG | + | chr5.4:40677614-40677633 | MS.gene027539:CDS | 25.0% |
| ! | GTAACAAAAGTTGAAGAATT+TGG | + | chr5.4:40677573-40677592 | MS.gene027539:CDS | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5.4:40676662-40676681 | MS.gene027539:CDS | 25.0% |
| !! | ATGGTTAAATTTTTGTTCTG+AGG | - | chr5.4:40676350-40676369 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+CGG | + | chr5.4:40676256-40676275 | MS.gene027539:CDS | 25.0% |
| !!! | TTGTTGGTAATTAACTTTCA+TGG | + | chr5.4:40676795-40676814 | MS.gene027539:intron | 25.0% |
| ACAAAAGTTGAAGAATTTGG+TGG | + | chr5.4:40677576-40677595 | MS.gene027539:CDS | 30.0% | |
| ACTATGTTATAAGAAGGAAG+GGG | + | chr5.4:40676663-40676682 | MS.gene027539:CDS | 30.0% | |
| AGTGAAACTGGTTATTCATT+TGG | + | chr5.4:40676401-40676420 | MS.gene027539:CDS | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5.4:40676657-40676676 | MS.gene027539:CDS | 30.0% | |
| CAAATGAATAACCAGTTTGA+CGG | - | chr5.4:40676493-40676512 | None:intergenic | 30.0% | |
| CACATCAAATTAGAAGCAAA+TGG | + | chr5.4:40677700-40677719 | MS.gene027539:CDS | 30.0% | |
| CAGATGAATAACCAATTTGA+CGG | - | chr5.4:40676553-40676572 | None:intergenic | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5.4:40676661-40676680 | MS.gene027539:CDS | 30.0% | |
| TAATACAAGTTCAAAGGAAG+AGG | + | chr5.4:40676903-40676922 | MS.gene027539:CDS | 30.0% | |
| TACAATATTCTTTGTTGGGA+TGG | - | chr5.4:40676753-40676772 | None:intergenic | 30.0% | |
| TCGGAACAATCATTGAAAAT+TGG | - | chr5.4:40677192-40677211 | None:intergenic | 30.0% | |
| TGATGTTAAACCAATAGCTT+TGG | + | chr5.4:40676960-40676979 | MS.gene027539:CDS | 30.0% | |
| TGGTTGAAAGTTATTCTTTG+AGG | + | chr5.4:40677634-40677653 | MS.gene027539:CDS | 30.0% | |
| TTAGCAACTTCAGTTTGAAT+CGG | - | chr5.4:40677384-40677403 | None:intergenic | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.4:40677236-40677255 | MS.gene027539:CDS | 30.0% | |
| ! | AAAACCACAATAAAAGCATG+TGG | - | chr5.4:40676935-40676954 | None:intergenic | 30.0% |
| ! | AAAGTTGAAATTTGGTAGCT+TGG | - | chr5.4:40677169-40677188 | None:intergenic | 30.0% |
| ! | AAGTTATTCTTTGAGGAGAA+TGG | + | chr5.4:40677641-40677660 | MS.gene027539:CDS | 30.0% |
| ! | AATTTGGTGGAACAAACAAA+TGG | + | chr5.4:40677589-40677608 | MS.gene027539:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.4:40677429-40677448 | MS.gene027539:CDS | 30.0% |
| ! | TGTTTGGGATGAAAATAGAT+TGG | + | chr5.4:40677422-40677441 | MS.gene027539:CDS | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5.4:40676988-40677007 | None:intergenic | 30.0% |
| !! | TACCTGTTGATAATCATTGA+AGG | - | chr5.4:40676989-40677008 | None:intergenic | 30.0% |
| !! | TTTAAGAGTGTTGATGAGAA+AGG | + | chr5.4:40677462-40677481 | MS.gene027539:CDS | 30.0% |
| !!! | AAATTTTTGTTCTGAGGTAG+AGG | - | chr5.4:40676344-40676363 | None:intergenic | 30.0% |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5.4:40677323-40677342 | MS.gene027539:CDS | 30.0% |
| AAATGGGAACAAAGAAGGTT+TGG | + | chr5.4:40677519-40677538 | MS.gene027539:CDS | 35.0% | |
| AAGTTGTTGAGGCAATGAAA+TGG | + | chr5.4:40677502-40677521 | MS.gene027539:CDS | 35.0% | |
| AATCATTTGAGCCTAAAGCT+TGG | - | chr5.4:40677137-40677156 | None:intergenic | 35.0% | |
| AGTCAAACTGGTTATTCATC+GGG | + | chr5.4:40676431-40676450 | MS.gene027539:CDS | 35.0% | |
| AGTCAAACTGGTTATTCATC+TGG | + | chr5.4:40676431-40676450 | MS.gene027539:CDS | 35.0% | |
| AGTTGTTGAGGCAATGAAAT+GGG | + | chr5.4:40677503-40677522 | MS.gene027539:CDS | 35.0% | |
| ATATTCTTTGTTGGGATGGA+AGG | - | chr5.4:40676749-40676768 | None:intergenic | 35.0% | |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5.4:40677491-40677510 | MS.gene027539:CDS | 35.0% | |
| CAATGAAATGGGAACAAAGA+AGG | + | chr5.4:40677514-40677533 | MS.gene027539:CDS | 35.0% | |
| CAGATGAATAACCAGTTTGA+CGG | - | chr5.4:40676463-40676482 | None:intergenic | 35.0% | |
| CAGTCAAACTGGTTATTCAT+CGG | + | chr5.4:40676430-40676449 | MS.gene027539:CDS | 35.0% | |
| CCAAGCTAATACAAGTTCAA+AGG | + | chr5.4:40676897-40676916 | MS.gene027539:CDS | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.4:40677240-40677259 | MS.gene027539:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.4:40677243-40677262 | None:intergenic | 35.0% | |
| CCTTTGAACTTGTATTAGCT+TGG | - | chr5.4:40676900-40676919 | None:intergenic | 35.0% | |
| CGTCAAACTGGTTATTCATT+TGG | + | chr5.4:40676491-40676510 | MS.gene027539:CDS | 35.0% | |
| CGTCAAATTGGTTATTCATC+TGG | + | chr5.4:40676551-40676570 | MS.gene027539:CDS | 35.0% | |
| GACTTCTTTCCATGTACAAA+AGG | + | chr5.4:40676192-40676211 | MS.gene027539:CDS | 35.0% | |
| GAGGAGAATGGATACAAAAT+TGG | + | chr5.4:40677653-40677672 | MS.gene027539:CDS | 35.0% | |
| GATTCAAACTGAAGTTGCTA+AGG | + | chr5.4:40677383-40677402 | MS.gene027539:CDS | 35.0% | |
| TACCATTTAAGCCAAGCTTT+AGG | + | chr5.4:40677123-40677142 | MS.gene027539:CDS | 35.0% | |
| TATTCTTTGTTGGGATGGAA+GGG | - | chr5.4:40676748-40676767 | None:intergenic | 35.0% | |
| TTATCTTGTGATATCGGATG+AGG | + | chr5.4:40676262-40676281 | MS.gene027539:CDS | 35.0% | |
| ! | ACTAGGATTCCTTTTGTACA+TGG | - | chr5.4:40676204-40676223 | None:intergenic | 35.0% |
| ! | ATGACCACATGCTTTTATTG+TGG | + | chr5.4:40676928-40676947 | MS.gene027539:CDS | 35.0% |
| ! | GACAATGGTTGATTCAATAC+TGG | - | chr5.4:40676632-40676651 | None:intergenic | 35.0% |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5.4:40677339-40677358 | MS.gene027539:CDS | 35.0% |
| ! | TTTGGTGTAAACAGTCAAAC+TGG | + | chr5.4:40676419-40676438 | MS.gene027539:CDS | 35.0% |
| !! | GCACAAACTTACTCTTGTTT+TGG | + | chr5.4:40676287-40676306 | MS.gene027539:CDS | 35.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.4:40677211-40677230 | MS.gene027539:CDS | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | + | chr5.4:40677062-40677081 | MS.gene027539:CDS | 40.0% | |
| ACTGAAGTTGCTAAGGTTGA+AGG | + | chr5.4:40677390-40677409 | MS.gene027539:CDS | 40.0% | |
| AGCCTAAAGCTTGGCTTAAA+TGG | - | chr5.4:40677128-40677147 | None:intergenic | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5.4:40677304-40677323 | MS.gene027539:CDS | 40.0% | |
| AGTTGCTAAGGTTGAAGGAA+AGG | + | chr5.4:40677395-40677414 | MS.gene027539:CDS | 40.0% | |
| CAATGATTGTTCCGAATCAG+TGG | + | chr5.4:40677197-40677216 | MS.gene027539:CDS | 40.0% | |
| CGTCAAACTGGTTATTCATC+TGG | + | chr5.4:40676521-40676540 | MS.gene027539:CDS | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | + | chr5.4:40677070-40677089 | MS.gene027539:CDS | 40.0% | |
| CTTGGCTTAAATGGTAGTTG+CGG | - | chr5.4:40677119-40677138 | None:intergenic | 40.0% | |
| GAACATAGCTTCTTCACTGT+AGG | - | chr5.4:40676606-40676625 | None:intergenic | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5.4:40676984-40677003 | MS.gene027539:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5.4:40677305-40677324 | MS.gene027539:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5.4:40676245-40676264 | None:intergenic | 40.0% | |
| TAGTAGCGATTCGAAGACAA+TGG | - | chr5.4:40676647-40676666 | None:intergenic | 40.0% | |
| TCTGGTGTAAACAGTCAAAC+TGG | + | chr5.4:40676569-40676588 | MS.gene027539:CDS | 40.0% | |
| TCTGGTGTAAACAGTGAAAC+TGG | + | chr5.4:40676389-40676408 | MS.gene027539:CDS | 40.0% | |
| TCTGGTGTAAACCGTCAAAT+TGG | + | chr5.4:40676539-40676558 | MS.gene027539:CDS | 40.0% | |
| TTGAAGGAAAGGATGCTGTT+TGG | + | chr5.4:40677406-40677425 | MS.gene027539:CDS | 40.0% | |
| TTGGCTTAAATGGTAGTTGC+GGG | - | chr5.4:40677118-40677137 | None:intergenic | 40.0% | |
| ! | AAGGAAAATAGTGGAGAAGG+TGG | + | chr5.4:40677342-40677361 | MS.gene027539:CDS | 40.0% |
| ! | CTTTCCAACAACCACTGATT+CGG | - | chr5.4:40677211-40677230 | None:intergenic | 40.0% |
| ! | TGAAGGAAAGGATGCTGTTT+GGG | + | chr5.4:40677407-40677426 | MS.gene027539:CDS | 40.0% |
| ! | TTTGGTGTAAACCGTCAAAC+TGG | + | chr5.4:40676509-40676528 | MS.gene027539:CDS | 40.0% |
| !! | AGTGTTGATGAGAAAGGTGT+TGG | + | chr5.4:40677468-40677487 | MS.gene027539:CDS | 40.0% |
| !! | GAAAGGTGTTGGATTGAGTT+TGG | + | chr5.4:40677479-40677498 | MS.gene027539:CDS | 40.0% |
| !!! | CTCTTGTTTTGGTTTGTGCA+AGG | + | chr5.4:40676298-40676317 | MS.gene027539:CDS | 40.0% |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5.4:40677439-40677458 | MS.gene027539:CDS | 40.0% |
| AGAAGGTTTGGATGGAATGC+TGG | + | chr5.4:40677531-40677550 | MS.gene027539:CDS | 45.0% | |
| AGGAATTCCATCAGAGGCAA+CGG | - | chr5.4:40677049-40677068 | None:intergenic | 45.0% | |
| CCTGGGTTATTGAGGGAAAA+AGG | + | chr5.4:40677069-40677088 | MS.gene027539:CDS | 45.0% | |
| GAAGGTTTGGATGGAATGCT+GGG | + | chr5.4:40677532-40677551 | MS.gene027539:CDS | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | + | chr5.4:40677061-40677080 | MS.gene027539:CDS | 45.0% | |
| GGGAACAAAGAAGGTTTGGA+TGG | + | chr5.4:40677523-40677542 | MS.gene027539:CDS | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | + | chr5.4:40677073-40677092 | MS.gene027539:CDS | 45.0% | |
| TCGGGTGAAAACAGTCAAAC+TGG | + | chr5.4:40676449-40676468 | MS.gene027539:CDS | 45.0% | |
| TCTGGTGTAAACCGTCAAAC+TGG | + | chr5.4:40676479-40676498 | MS.gene027539:CDS | 45.0% | |
| TCTTGTGATATCGGATGAGG+AGG | + | chr5.4:40676265-40676284 | MS.gene027539:CDS | 45.0% | |
| TGGCTTAAATGGTAGTTGCG+GGG | - | chr5.4:40677117-40677136 | None:intergenic | 45.0% | |
| TGTTCCGAATCAGTGGTTGT+TGG | + | chr5.4:40677204-40677223 | MS.gene027539:CDS | 45.0% | |
| TTGAAGGGCTCCAAAGCTAT+TGG | - | chr5.4:40676973-40676992 | None:intergenic | 45.0% | |
| TTTCAGATCCACCACCATCA+GGG | + | chr5.4:40676228-40676247 | MS.gene027539:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5.4:40677537-40677556 | MS.gene027539:CDS | 45.0% | |
| ! | ATTTGGTAGCTTGGAACGCA+AGG | - | chr5.4:40677160-40677179 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | - | chr5.4:40677072-40677091 | None:intergenic | 45.0% |
| ! | TTTTCCCTCAATAACCCAGG+AGG | - | chr5.4:40677069-40677088 | None:intergenic | 45.0% |
| !! | AAGAAGGAAGGGGAAGTATC+TGG | + | chr5.4:40676673-40676692 | MS.gene027539:CDS | 45.0% |
| !! | AGAAGGAAGGGGAAGTATCT+GGG | + | chr5.4:40676674-40676693 | MS.gene027539:CDS | 45.0% |
| CCTCTGATGGAATTCCTCCT+GGG | + | chr5.4:40677052-40677071 | MS.gene027539:CDS | 50.0% | |
| CTTGAATTTGGCCCTGATGG+TGG | - | chr5.4:40676242-40676261 | None:intergenic | 50.0% | |
| CTTTCAGATCCACCACCATC+AGG | + | chr5.4:40676227-40676246 | MS.gene027539:CDS | 50.0% | |
| GCAAAATCCGTTGCCTCTGA+TGG | + | chr5.4:40677039-40677058 | MS.gene027539:CDS | 50.0% | |
| GTTTGGATGGAATGCTGGGA+AGG | + | chr5.4:40677536-40677555 | MS.gene027539:CDS | 50.0% | |
| !! | GAAGGAAGGGGAAGTATCTG+GGG | + | chr5.4:40676675-40676694 | MS.gene027539:CDS | 50.0% |
| !! | GGTGGATCTGAAAGAGCACT+AGG | - | chr5.4:40676221-40676240 | None:intergenic | 50.0% |
| CCCAGGAGGAATTCCATCAG+AGG | - | chr5.4:40677055-40677074 | None:intergenic | 55.0% | |
| GCCTCTGATGGAATTCCTCC+TGG | + | chr5.4:40677051-40677070 | MS.gene027539:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5.4:40676239-40676258 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 40676179 | 40677728 | 40676179 | ID=MS.gene027539 |
| chr5.4 | mRNA | 40676179 | 40677728 | 40676179 | ID=MS.gene027539.t1;Parent=MS.gene027539 |
| chr5.4 | exon | 40676179 | 40676696 | 40676179 | ID=MS.gene027539.t1.exon1;Parent=MS.gene027539.t1 |
| chr5.4 | CDS | 40676179 | 40676696 | 40676179 | ID=cds.MS.gene027539.t1;Parent=MS.gene027539.t1 |
| chr5.4 | exon | 40676897 | 40677728 | 40676897 | ID=MS.gene027539.t1.exon2;Parent=MS.gene027539.t1 |
| chr5.4 | CDS | 40676897 | 40677728 | 40676897 | ID=cds.MS.gene027539.t1;Parent=MS.gene027539.t1 |
| Gene Sequence |
| Protein sequence |
