Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027543.t1 | RHN55134.1 | 94 | 386 | 23 | 0 | 1 | 386 | 31 | 416 | 1.10E-213 | 752.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027543.t1 | G7K475 | 94.0 | 386 | 23 | 0 | 1 | 386 | 1 | 386 | 8.1e-214 | 752.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45116 | MS.gene027543 | PPI |
| MS.gene027543 | MS.gene78745 | PPI |
| MS.gene68293 | MS.gene027543 | PPI |
| MS.gene027543 | MS.gene027538 | PPI |
| MS.gene027543 | MS.gene027536 | PPI |
| MS.gene027543 | MS.gene027539 | PPI |
| MS.gene027539 | MS.gene027543 | PPI |
| MS.gene027535 | MS.gene027543 | PPI |
| MS.gene027543 | MS.gene042700 | PPI |
| MS.gene68296 | MS.gene027543 | PPI |
| MS.gene027543 | MS.gene45114 | PPI |
| MS.gene027543 | MS.gene68298 | PPI |
| MS.gene68292 | MS.gene027543 | PPI |
| MS.gene027543 | MS.gene43936 | PPI |
| MS.gene68297 | MS.gene027543 | PPI |
| MS.gene45115 | MS.gene027543 | PPI |
| MS.gene027543 | MS.gene45119 | PPI |
| MS.gene027540 | MS.gene027543 | PPI |
| MS.gene027543 | MS.gene68292 | PPI |
| MS.gene45117 | MS.gene027543 | PPI |
| MS.gene027543 | MS.gene053932 | PPI |
| MS.gene027537 | MS.gene027543 | PPI |
| MS.gene68295 | MS.gene027543 | PPI |
| MS.gene027543 | MS.gene45120 | PPI |
| MS.gene045965 | MS.gene027543 | PPI |
| MS.gene43935 | MS.gene027543 | PPI |
| MS.gene45114 | MS.gene027543 | PPI |
| MS.gene027543 | MS.gene45118 | PPI |
| MS.gene027543 | MS.gene027540 | PPI |
| MS.gene027544 | MS.gene027543 | PPI |
| MS.gene027534 | MS.gene027543 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027543.t1 | MTR_5g035690 | 94.041 | 386 | 23 | 0 | 1 | 386 | 1 | 386 | 0.0 | 756 |
| MS.gene027543.t1 | MTR_5g035665 | 87.824 | 386 | 40 | 1 | 1 | 386 | 1 | 379 | 0.0 | 699 |
| MS.gene027543.t1 | MTR_5g035750 | 86.305 | 387 | 52 | 1 | 1 | 386 | 1 | 387 | 0.0 | 690 |
| MS.gene027543.t1 | MTR_5g035670 | 82.732 | 388 | 58 | 2 | 1 | 386 | 1 | 381 | 0.0 | 656 |
| MS.gene027543.t1 | MTR_5g035760 | 77.320 | 388 | 78 | 3 | 1 | 386 | 1 | 380 | 0.0 | 601 |
| MS.gene027543.t1 | MTR_6g472110 | 51.970 | 406 | 168 | 13 | 1 | 386 | 1 | 399 | 2.13e-129 | 377 |
| MS.gene027543.t1 | MTR_6g016660 | 42.752 | 407 | 203 | 10 | 1 | 386 | 1 | 398 | 3.39e-100 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027543.t1 | AT1G13480 | 44.250 | 400 | 196 | 11 | 1 | 386 | 1 | 387 | 3.05e-106 | 318 |
| MS.gene027543.t1 | AT1G13520 | 44.888 | 401 | 192 | 12 | 1 | 386 | 1 | 387 | 2.04e-102 | 308 |
| MS.gene027543.t1 | AT1G13530 | 43.890 | 401 | 194 | 13 | 1 | 386 | 1 | 385 | 2.00e-101 | 306 |
| MS.gene027543.t1 | AT1G13510 | 44.361 | 399 | 190 | 13 | 1 | 386 | 1 | 380 | 2.07e-101 | 305 |
| MS.gene027543.t1 | AT1G13540 | 44.750 | 400 | 188 | 13 | 1 | 386 | 1 | 381 | 3.69e-99 | 300 |
| MS.gene027543.t1 | AT1G13490 | 44.975 | 398 | 191 | 10 | 1 | 386 | 1 | 382 | 2.77e-98 | 297 |
| MS.gene027543.t1 | AT1G13470 | 46.212 | 396 | 185 | 13 | 1 | 386 | 1 | 378 | 7.12e-96 | 291 |
| MS.gene027543.t1 | AT1G13550 | 43.142 | 401 | 194 | 14 | 1 | 383 | 1 | 385 | 2.80e-92 | 282 |
| MS.gene027543.t1 | AT1G13500 | 43.424 | 403 | 194 | 15 | 1 | 386 | 1 | 386 | 1.75e-89 | 275 |
| MS.gene027543.t1 | AT1G13490 | 43.073 | 397 | 181 | 10 | 1 | 386 | 1 | 363 | 2.17e-89 | 274 |
| MS.gene027543.t1 | AT1G61600 | 38.407 | 427 | 216 | 9 | 1 | 386 | 1 | 421 | 4.64e-89 | 275 |
Find 87 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTAATGCTTGGCTTAAA+TGG | 0.196314 | 5.3:-24327208 | None:intergenic |
| CCTGGCTTATTAAGGGAAAA+AGG | 0.208156 | 5.3:+24327152 | MS.gene027543:CDS |
| GAATTCCTCCTGGCTTATTA+AGG | 0.210362 | 5.3:+24327144 | MS.gene027543:CDS |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5.3:-24327323 | None:intergenic |
| TTGAAGGAAAGGATGCTATT+TGG | 0.225875 | 5.3:+24327489 | MS.gene027543:CDS |
| GAGGAGAATGGATAGAAATT+TGG | 0.234279 | 5.3:+24327736 | MS.gene027543:CDS |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5.3:+24327337 | MS.gene027543:CDS |
| ATCACAAGATAACCTGAATT+TGG | 0.289417 | 5.3:-24326522 | None:intergenic |
| GCAAAATCCGTTGCCTTTGA+TGG | 0.299145 | 5.3:+24327122 | MS.gene027543:CDS |
| GCTCAAACTTACTCTTGTTT+TGG | 0.301630 | 5.3:+24326558 | MS.gene027543:CDS |
| TGAAGGAAAGGATGCTATTT+GGG | 0.302453 | 5.3:+24327490 | MS.gene027543:CDS |
| AATCAGTAGTTGTTGGAAAA+TGG | 0.313100 | 5.3:+24327294 | MS.gene027543:CDS |
| ATAGACACTCACATCAAATT+AGG | 0.326022 | 5.3:+24327774 | MS.gene027543:CDS |
| CCACCATCAGGGCCAAATTC+AGG | 0.344257 | 5.3:+24326510 | MS.gene027543:CDS |
| CACATCAAATTAGGAGCAAA+TGG | 0.354134 | 5.3:+24327783 | MS.gene027543:CDS |
| GAAAGGTTTGGATGGATTGC+TGG | 0.360515 | 5.3:+24327614 | MS.gene027543:CDS |
| TTGAAGGGCTCCAAAGCTAT+TGG | 0.369259 | 5.3:-24327053 | None:intergenic |
| ATTCTTGATTCTATTGTCCT+TGG | 0.390390 | 5.3:-24326586 | None:intergenic |
| ACAAAAGTTGAAGAGTTTGA+TGG | 0.392275 | 5.3:+24327659 | MS.gene027543:CDS |
| TTGGCTTAAATGGTAGTTGC+GGG | 0.394226 | 5.3:-24327198 | None:intergenic |
| CCTTTGAACTTGTATTAGCT+TGG | 0.394949 | 5.3:-24326980 | None:intergenic |
| GCCTTTGATGGAATTCCTCC+TGG | 0.396546 | 5.3:+24327134 | MS.gene027543:CDS |
| AATTCCTCCTGGCTTATTAA+GGG | 0.397833 | 5.3:+24327145 | MS.gene027543:CDS |
| GACAATGGTTGATTCAATAC+TGG | 0.398389 | 5.3:-24326711 | None:intergenic |
| TGATGTTAAACCAATAGCTT+TGG | 0.399590 | 5.3:+24327043 | MS.gene027543:CDS |
| ACGATTGGAAAGTTGAAATT+CGG | 0.411346 | 5.3:-24327257 | None:intergenic |
| GTTTGGATGGATTGCTGGGA+AGG | 0.415810 | 5.3:+24327619 | MS.gene027543:CDS |
| AAGTTATTCATTGAGGAGAA+TGG | 0.428198 | 5.3:+24327724 | MS.gene027543:CDS |
| GATGAAAATAGATTAGTTGA+TGG | 0.429291 | 5.3:+24327512 | MS.gene027543:CDS |
| TACCATTTAAGCCAAGCATT+AGG | 0.431877 | 5.3:+24327206 | MS.gene027543:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5.3:+24327387 | MS.gene027543:CDS |
| AAAGTTGAAATTCGGTAGCT+TGG | 0.433143 | 5.3:-24327249 | None:intergenic |
| AAATGGGAACAAGAAAGGTT+TGG | 0.437035 | 5.3:+24327602 | MS.gene027543:CDS |
| TCAGGTGTAAATAGTCAAAC+AGG | 0.442858 | 5.3:+24326651 | MS.gene027543:CDS |
| GCCCTTCAATGATTATCAAC+AGG | 0.448229 | 5.3:+24327067 | MS.gene027543:CDS |
| GGCTTCTTTCCATGTACAAA+AGG | 0.457238 | 5.3:+24326463 | MS.gene027543:CDS |
| TGCTCTGAATCAGTAGTTGT+TGG | 0.458637 | 5.3:+24327287 | MS.gene027543:CDS |
| CTATCAGACCCACCACCATC+AGG | 0.458752 | 5.3:+24326498 | MS.gene027543:CDS |
| AGAAGGAAGGGGAAATATCA+AGG | 0.463926 | 5.3:+24326756 | MS.gene027543:CDS |
| TACCTGTTGATAATCATTGA+AGG | 0.466990 | 5.3:-24327069 | None:intergenic |
| GAATTTGGCCCTGATGGTGG+TGG | 0.471784 | 5.3:-24326507 | None:intergenic |
| ACAGAAGTCGCTAAGGTTGA+AGG | 0.473616 | 5.3:+24327473 | MS.gene027543:CDS |
| GTAACCATCAGTTATTCATC+AGG | 0.482475 | 5.3:+24326633 | MS.gene027543:CDS |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.489041 | 5.3:+24327422 | MS.gene027543:CDS |
| AATCATTTGAACCTAATGCT+TGG | 0.490134 | 5.3:-24327217 | None:intergenic |
| TTTGGATGGATTGCTGGGAA+GGG | 0.490992 | 5.3:+24327620 | MS.gene027543:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.3:+24327323 | MS.gene027543:CDS |
| ATCGCTATTATGTTATAAGA+AGG | 0.507064 | 5.3:+24326739 | MS.gene027543:CDS |
| CAATGAAATGGGAACAAGAA+AGG | 0.514439 | 5.3:+24327597 | MS.gene027543:CDS |
| GGGAACAAGAAAGGTTTGGA+TGG | 0.517021 | 5.3:+24327606 | MS.gene027543:CDS |
| TCAGAGCAATCATTAACGAT+TGG | 0.520159 | 5.3:-24327272 | None:intergenic |
| AAAGGTTTGGATGGATTGCT+GGG | 0.524617 | 5.3:+24327615 | MS.gene027543:CDS |
| TAATACAAGTTCAAAGGAAG+AGG | 0.529363 | 5.3:+24326986 | MS.gene027543:CDS |
| AAGTTGTTGAGGCAATGAAA+TGG | 0.534687 | 5.3:+24327585 | MS.gene027543:CDS |
| AGTTTGATGGAACAAACAAA+TGG | 0.536388 | 5.3:+24327672 | MS.gene027543:CDS |
| ACATCAAATTAGGAGCAAAT+GGG | 0.536534 | 5.3:+24327784 | MS.gene027543:CDS |
| GAAATTTAGTTGTTATGTGT+TGG | 0.537435 | 5.3:+24327697 | MS.gene027543:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.541325 | 5.3:-24326506 | None:intergenic |
| ACCTGTTGATAATCATTGAA+GGG | 0.546054 | 5.3:-24327068 | None:intergenic |
| TGGTTGAAAGTTATTCATTG+AGG | 0.552676 | 5.3:+24327717 | MS.gene027543:CDS |
| ATTCGGTAGCTTGGAACGCA+AGG | 0.554145 | 5.3:-24327240 | None:intergenic |
| CCAAGCTAATACAAGTTCAA+AGG | 0.554728 | 5.3:+24326980 | MS.gene027543:CDS |
| CTATTATGTTATAAGAAGGA+AGG | 0.557905 | 5.3:+24326743 | MS.gene027543:CDS |
| CTTGGCTTAAATGGTAGTTG+CGG | 0.559548 | 5.3:-24327199 | None:intergenic |
| GCCAGGAGGAATTCCATCAA+AGG | 0.565396 | 5.3:-24327135 | None:intergenic |
| TAACCTGAATTTGGCCCTGA+TGG | 0.566146 | 5.3:-24326513 | None:intergenic |
| GATTAGTTGATGGAGTATTG+TGG | 0.572201 | 5.3:+24327522 | MS.gene027543:CDS |
| AGTTGTTGAGGCAATGAAAT+GGG | 0.574296 | 5.3:+24327586 | MS.gene027543:CDS |
| TATTATGTTATAAGAAGGAA+GGG | 0.576465 | 5.3:+24326744 | MS.gene027543:CDS |
| TACACCTGATGAATAACTGA+TGG | 0.584467 | 5.3:-24326637 | None:intergenic |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.3:+24327319 | MS.gene027543:CDS |
| GGTGGGTCTGATAGAGCACT+AGG | 0.587046 | 5.3:-24326489 | None:intergenic |
| GAACATAGCTTCTTCACTGT+GGG | 0.591417 | 5.3:-24326685 | None:intergenic |
| TATTCAAACAGAAGTCGCTA+AGG | 0.601290 | 5.3:+24327466 | MS.gene027543:CDS |
| AGTCGCTAAGGTTGAAGGAA+AGG | 0.601966 | 5.3:+24327478 | MS.gene027543:CDS |
| AAGGAAAATAGTGGAGAAGG+TGG | 0.602522 | 5.3:+24327425 | MS.gene027543:CDS |
| GAAGGAAGGGGAAATATCAA+GGG | 0.603366 | 5.3:+24326757 | MS.gene027543:CDS |
| AGGAATTCCATCAAAGGCAA+CGG | 0.610356 | 5.3:-24327129 | None:intergenic |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5.3:+24327388 | MS.gene027543:CDS |
| CCTGAATTTGGCCCTGATGG+TGG | 0.613907 | 5.3:-24326510 | None:intergenic |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.614856 | 5.3:+24327574 | MS.gene027543:CDS |
| TGGCTTAAATGGTAGTTGCG+GGG | 0.627549 | 5.3:-24327197 | None:intergenic |
| TATCAGACCCACCACCATCA+GGG | 0.637745 | 5.3:+24326499 | MS.gene027543:CDS |
| AAAACTACAACAAAAGCATG+TGG | 0.665724 | 5.3:-24327015 | None:intergenic |
| TGAACATAGCTTCTTCACTG+TGG | 0.668145 | 5.3:-24326686 | None:intergenic |
| ATTATGTTATAAGAAGGAAG+GGG | 0.668280 | 5.3:+24326745 | MS.gene027543:CDS |
| TAATAGCGATTAGAAGACAA+TGG | 0.675741 | 5.3:-24326726 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGACATAATTATATTTTTGT+TGG | + | chr5.3:24326858-24326877 | MS.gene027543:intron | 15.0% |
| !! | GAAATAATCAAAAAAGGTTA+TGG | + | chr5.3:24327092-24327111 | MS.gene027543:CDS | 20.0% |
| !! | TATTATGTTATAAGAAGGAA+GGG | + | chr5.3:24326744-24326763 | MS.gene027543:CDS | 20.0% |
| !!! | ATTTTTTCAAAGGAAAATAG+TGG | + | chr5.3:24327416-24327435 | MS.gene027543:CDS | 20.0% |
| !!! | GTTGATTTATAAAGTAATAG+AGG | + | chr5.3:24326918-24326937 | MS.gene027543:intron | 20.0% |
| ! | ATCGCTATTATGTTATAAGA+AGG | + | chr5.3:24326739-24326758 | MS.gene027543:CDS | 25.0% |
| ! | ATTATGTTATAAGAAGGAAG+GGG | + | chr5.3:24326745-24326764 | MS.gene027543:CDS | 25.0% |
| ! | CAGGTAGAAATAATCAAAAA+AGG | + | chr5.3:24327086-24327105 | MS.gene027543:CDS | 25.0% |
| ! | CTATTATGTTATAAGAAGGA+AGG | + | chr5.3:24326743-24326762 | MS.gene027543:CDS | 25.0% |
| ! | GAAATTTAGTTGTTATGTGT+TGG | + | chr5.3:24327697-24327716 | MS.gene027543:CDS | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5.3:24327337-24327356 | MS.gene027543:CDS | 25.0% |
| ! | TCATATTACAATTCTCTGTT+GGG | - | chr5.3:24326839-24326858 | None:intergenic | 25.0% |
| ! | TGGTAATTAGTTAACTTTCA+TGG | + | chr5.3:24326878-24326897 | MS.gene027543:intron | 25.0% |
| !! | GATGAAAATAGATTAGTTGA+TGG | + | chr5.3:24327512-24327531 | MS.gene027543:CDS | 25.0% |
| AAGTTATTCATTGAGGAGAA+TGG | + | chr5.3:24327724-24327743 | MS.gene027543:CDS | 30.0% | |
| AATCAGTAGTTGTTGGAAAA+TGG | + | chr5.3:24327294-24327313 | MS.gene027543:CDS | 30.0% | |
| AATCATTTGAACCTAATGCT+TGG | - | chr5.3:24327220-24327239 | None:intergenic | 30.0% | |
| ACAAAAGTTGAAGAGTTTGA+TGG | + | chr5.3:24327659-24327678 | MS.gene027543:CDS | 30.0% | |
| ACATCAAATTAGGAGCAAAT+GGG | + | chr5.3:24327784-24327803 | MS.gene027543:CDS | 30.0% | |
| ACGATTGGAAAGTTGAAATT+CGG | - | chr5.3:24327260-24327279 | None:intergenic | 30.0% | |
| AGTTTGATGGAACAAACAAA+TGG | + | chr5.3:24327672-24327691 | MS.gene027543:CDS | 30.0% | |
| ATAGACACTCACATCAAATT+AGG | + | chr5.3:24327774-24327793 | MS.gene027543:CDS | 30.0% | |
| ATCACAAGATAACCTGAATT+TGG | - | chr5.3:24326525-24326544 | None:intergenic | 30.0% | |
| ATTCTTGATTCTATTGTCCT+TGG | - | chr5.3:24326589-24326608 | None:intergenic | 30.0% | |
| CATGGTTAAAGAAAGAGAAA+TGG | + | chr5.3:24326896-24326915 | MS.gene027543:intron | 30.0% | |
| CTCATATTACAATTCTCTGT+TGG | - | chr5.3:24326840-24326859 | None:intergenic | 30.0% | |
| GAAAAATGTTGGATTGAGTT+TGG | + | chr5.3:24327562-24327581 | MS.gene027543:CDS | 30.0% | |
| TAATACAAGTTCAAAGGAAG+AGG | + | chr5.3:24326986-24327005 | MS.gene027543:CDS | 30.0% | |
| TAATAGCGATTAGAAGACAA+TGG | - | chr5.3:24326729-24326748 | None:intergenic | 30.0% | |
| TGATGTTAAACCAATAGCTT+TGG | + | chr5.3:24327043-24327062 | MS.gene027543:CDS | 30.0% | |
| TGGTTGAAAGTTATTCATTG+AGG | + | chr5.3:24327717-24327736 | MS.gene027543:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.3:24327319-24327338 | MS.gene027543:CDS | 30.0% | |
| ! | AAAACTACAACAAAAGCATG+TGG | - | chr5.3:24327018-24327037 | None:intergenic | 30.0% |
| ! | ATGGTTACATTTTTGTTCTG+AGG | - | chr5.3:24326621-24326640 | None:intergenic | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5.3:24327071-24327090 | None:intergenic | 30.0% |
| !! | AGTGTTGATGAGAAAAATGT+TGG | + | chr5.3:24327551-24327570 | MS.gene027543:CDS | 30.0% |
| !! | TACCTGTTGATAATCATTGA+AGG | - | chr5.3:24327072-24327091 | None:intergenic | 30.0% |
| !!! | ATGGGAGATGATTTTTTCAA+AGG | + | chr5.3:24327406-24327425 | MS.gene027543:CDS | 30.0% |
| AAAGTTGAAATTCGGTAGCT+TGG | - | chr5.3:24327252-24327271 | None:intergenic | 35.0% | |
| AAATGGGAACAAGAAAGGTT+TGG | + | chr5.3:24327602-24327621 | MS.gene027543:CDS | 35.0% | |
| AACCTAATGCTTGGCTTAAA+TGG | - | chr5.3:24327211-24327230 | None:intergenic | 35.0% | |
| AAGTTGTTGAGGCAATGAAA+TGG | + | chr5.3:24327585-24327604 | MS.gene027543:CDS | 35.0% | |
| AATTCCTCCTGGCTTATTAA+GGG | + | chr5.3:24327145-24327164 | MS.gene027543:CDS | 35.0% | |
| AGTTGTTGAGGCAATGAAAT+GGG | + | chr5.3:24327586-24327605 | MS.gene027543:CDS | 35.0% | |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5.3:24327574-24327593 | MS.gene027543:CDS | 35.0% | |
| CAATGAAATGGGAACAAGAA+AGG | + | chr5.3:24327597-24327616 | MS.gene027543:CDS | 35.0% | |
| CACATCAAATTAGGAGCAAA+TGG | + | chr5.3:24327783-24327802 | MS.gene027543:CDS | 35.0% | |
| CCAAGCTAATACAAGTTCAA+AGG | + | chr5.3:24326980-24326999 | MS.gene027543:CDS | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.3:24327323-24327342 | MS.gene027543:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.3:24327326-24327345 | None:intergenic | 35.0% | |
| CCTTTGAACTTGTATTAGCT+TGG | - | chr5.3:24326983-24327002 | None:intergenic | 35.0% | |
| CTGGCTTATTAAGGGAAAAA+GGG | + | chr5.3:24327153-24327172 | MS.gene027543:CDS | 35.0% | |
| GAGGAGAATGGATAGAAATT+TGG | + | chr5.3:24327736-24327755 | MS.gene027543:CDS | 35.0% | |
| GTAACCATCAGTTATTCATC+AGG | + | chr5.3:24326633-24326652 | MS.gene027543:CDS | 35.0% | |
| TACACCTGATGAATAACTGA+TGG | - | chr5.3:24326640-24326659 | None:intergenic | 35.0% | |
| TACCATTTAAGCCAAGCATT+AGG | + | chr5.3:24327206-24327225 | MS.gene027543:CDS | 35.0% | |
| TATTCAAACAGAAGTCGCTA+AGG | + | chr5.3:24327466-24327485 | MS.gene027543:CDS | 35.0% | |
| TCAGAGCAATCATTAACGAT+TGG | - | chr5.3:24327275-24327294 | None:intergenic | 35.0% | |
| TCAGGTGTAAATAGTCAAAC+AGG | + | chr5.3:24326651-24326670 | MS.gene027543:CDS | 35.0% | |
| TTGAAGGAAAGGATGCTATT+TGG | + | chr5.3:24327489-24327508 | MS.gene027543:CDS | 35.0% | |
| ! | ACTAGGATTCCTTTTGTACA+TGG | - | chr5.3:24326475-24326494 | None:intergenic | 35.0% |
| ! | GACAATGGTTGATTCAATAC+TGG | - | chr5.3:24326714-24326733 | None:intergenic | 35.0% |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5.3:24327422-24327441 | MS.gene027543:CDS | 35.0% |
| ! | TGAAGGAAAGGATGCTATTT+GGG | + | chr5.3:24327490-24327509 | MS.gene027543:CDS | 35.0% |
| !! | GATTAGTTGATGGAGTATTG+TGG | + | chr5.3:24327522-24327541 | MS.gene027543:CDS | 35.0% |
| !! | GCTCAAACTTACTCTTGTTT+TGG | + | chr5.3:24326558-24326577 | MS.gene027543:CDS | 35.0% |
| !!! | ACATTTTTGTTCTGAGGTAG+AGG | - | chr5.3:24326615-24326634 | None:intergenic | 35.0% |
| AATTCTCTGTTGGGATAGCA+GGG | - | chr5.3:24326830-24326849 | None:intergenic | 40.0% | |
| AGAAGGAAGGGGAAATATCA+AGG | + | chr5.3:24326756-24326775 | MS.gene027543:CDS | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5.3:24327387-24327406 | MS.gene027543:CDS | 40.0% | |
| AGGAATTCCATCAAAGGCAA+CGG | - | chr5.3:24327132-24327151 | None:intergenic | 40.0% | |
| CCTGGCTTATTAAGGGAAAA+AGG | + | chr5.3:24327152-24327171 | MS.gene027543:CDS | 40.0% | |
| CTTGGCTTAAATGGTAGTTG+CGG | - | chr5.3:24327202-24327221 | None:intergenic | 40.0% | |
| GAACATAGCTTCTTCACTGT+GGG | - | chr5.3:24326688-24326707 | None:intergenic | 40.0% | |
| GAAGGAAGGGGAAATATCAA+GGG | + | chr5.3:24326757-24326776 | MS.gene027543:CDS | 40.0% | |
| GAATTCCTCCTGGCTTATTA+AGG | + | chr5.3:24327144-24327163 | MS.gene027543:CDS | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5.3:24327067-24327086 | MS.gene027543:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5.3:24327388-24327407 | MS.gene027543:CDS | 40.0% | |
| GCTTATTAAGGGAAAAAGGG+TGG | + | chr5.3:24327156-24327175 | MS.gene027543:CDS | 40.0% | |
| GGCTTCTTTCCATGTACAAA+AGG | + | chr5.3:24326463-24326482 | MS.gene027543:CDS | 40.0% | |
| TGAACATAGCTTCTTCACTG+TGG | - | chr5.3:24326689-24326708 | None:intergenic | 40.0% | |
| TTGGCTTAAATGGTAGTTGC+GGG | - | chr5.3:24327201-24327220 | None:intergenic | 40.0% | |
| ! | AAGGAAAATAGTGGAGAAGG+TGG | + | chr5.3:24327425-24327444 | MS.gene027543:CDS | 40.0% |
| ! | CCTTTTTCCCTTAATAAGCC+AGG | - | chr5.3:24327155-24327174 | None:intergenic | 40.0% |
| ! | TGCTCTGAATCAGTAGTTGT+TGG | + | chr5.3:24327287-24327306 | MS.gene027543:CDS | 40.0% |
| ! | TTTTCCCTTAATAAGCCAGG+AGG | - | chr5.3:24327152-24327171 | None:intergenic | 40.0% |
| !! | AAAGGTTTGGATGGATTGCT+GGG | + | chr5.3:24327615-24327634 | MS.gene027543:CDS | 40.0% |
| !!! | CTCTTGTTTTGGTTTGTCCA+AGG | + | chr5.3:24326569-24326588 | MS.gene027543:CDS | 40.0% |
| ACAGAAGTCGCTAAGGTTGA+AGG | + | chr5.3:24327473-24327492 | MS.gene027543:CDS | 45.0% | |
| AGTCGCTAAGGTTGAAGGAA+AGG | + | chr5.3:24327478-24327497 | MS.gene027543:CDS | 45.0% | |
| CAATTCTCTGTTGGGATAGC+AGG | - | chr5.3:24326831-24326850 | None:intergenic | 45.0% | |
| GCAAAATCCGTTGCCTTTGA+TGG | + | chr5.3:24327122-24327141 | MS.gene027543:CDS | 45.0% | |
| GGGAACAAGAAAGGTTTGGA+TGG | + | chr5.3:24327606-24327625 | MS.gene027543:CDS | 45.0% | |
| TAACCTGAATTTGGCCCTGA+TGG | - | chr5.3:24326516-24326535 | None:intergenic | 45.0% | |
| TGGCTTAAATGGTAGTTGCG+GGG | - | chr5.3:24327200-24327219 | None:intergenic | 45.0% | |
| TTGAAGGGCTCCAAAGCTAT+TGG | - | chr5.3:24327056-24327075 | None:intergenic | 45.0% | |
| !! | GAAAGGTTTGGATGGATTGC+TGG | + | chr5.3:24327614-24327633 | MS.gene027543:CDS | 45.0% |
| !! | TTTGGATGGATTGCTGGGAA+GGG | + | chr5.3:24327620-24327639 | MS.gene027543:CDS | 45.0% |
| ATTCGGTAGCTTGGAACGCA+AGG | - | chr5.3:24327243-24327262 | None:intergenic | 50.0% | |
| GCCAGGAGGAATTCCATCAA+AGG | - | chr5.3:24327138-24327157 | None:intergenic | 50.0% | |
| GCCTTTGATGGAATTCCTCC+TGG | + | chr5.3:24327134-24327153 | MS.gene027543:CDS | 50.0% | |
| TATCAGACCCACCACCATCA+GGG | + | chr5.3:24326499-24326518 | MS.gene027543:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5.3:24326509-24326528 | None:intergenic | 50.0% |
| !! | GTTTGGATGGATTGCTGGGA+AGG | + | chr5.3:24327619-24327638 | MS.gene027543:CDS | 50.0% |
| CCACCATCAGGGCCAAATTC+AGG | + | chr5.3:24326510-24326529 | MS.gene027543:CDS | 55.0% | |
| CCTGAATTTGGCCCTGATGG+TGG | - | chr5.3:24326513-24326532 | None:intergenic | 55.0% | |
| CTATCAGACCCACCACCATC+AGG | + | chr5.3:24326498-24326517 | MS.gene027543:CDS | 55.0% | |
| ! | GGTGGGTCTGATAGAGCACT+AGG | - | chr5.3:24326492-24326511 | None:intergenic | 55.0% |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5.3:24326510-24326529 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 24326450 | 24327811 | 24326450 | ID=MS.gene027543 |
| chr5.3 | mRNA | 24326450 | 24327811 | 24326450 | ID=MS.gene027543.t1;Parent=MS.gene027543 |
| chr5.3 | exon | 24326450 | 24326778 | 24326450 | ID=MS.gene027543.t1.exon1;Parent=MS.gene027543.t1 |
| chr5.3 | CDS | 24326450 | 24326778 | 24326450 | ID=cds.MS.gene027543.t1;Parent=MS.gene027543.t1 |
| chr5.3 | exon | 24326980 | 24327811 | 24326980 | ID=MS.gene027543.t1.exon2;Parent=MS.gene027543.t1 |
| chr5.3 | CDS | 24326980 | 24327811 | 24326980 | ID=cds.MS.gene027543.t1;Parent=MS.gene027543.t1 |
| Gene Sequence |
| Protein sequence |
