Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027538.t1 | XP_003613366.2 | 91.4 | 325 | 28 | 0 | 1 | 325 | 46 | 370 | 2.70E-171 | 611.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027538.t1 | G7K479 | 91.4 | 325 | 28 | 0 | 1 | 325 | 1 | 325 | 2.0e-171 | 611.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027543 | MS.gene027538 | PPI |
| MS.gene45117 | MS.gene027538 | PPI |
| MS.gene027538 | MS.gene042700 | PPI |
| MS.gene027534 | MS.gene027538 | PPI |
| MS.gene027537 | MS.gene027538 | PPI |
| MS.gene68298 | MS.gene027538 | PPI |
| MS.gene68295 | MS.gene027538 | PPI |
| MS.gene027538 | MS.gene45119 | PPI |
| MS.gene045965 | MS.gene027538 | PPI |
| MS.gene43935 | MS.gene027538 | PPI |
| MS.gene45114 | MS.gene027538 | PPI |
| MS.gene027544 | MS.gene027538 | PPI |
| MS.gene45116 | MS.gene027538 | PPI |
| MS.gene68293 | MS.gene027538 | PPI |
| MS.gene027538 | MS.gene053932 | PPI |
| MS.gene027539 | MS.gene027538 | PPI |
| MS.gene027535 | MS.gene027538 | PPI |
| MS.gene45115 | MS.gene027538 | PPI |
| MS.gene027538 | MS.gene027536 | PPI |
| MS.gene43936 | MS.gene027538 | PPI |
| MS.gene027538 | MS.gene45120 | PPI |
| MS.gene68296 | MS.gene027538 | PPI |
| MS.gene027538 | MS.gene45118 | PPI |
| MS.gene68292 | MS.gene027538 | PPI |
| MS.gene027538 | MS.gene78745 | PPI |
| MS.gene68297 | MS.gene027538 | PPI |
| MS.gene027540 | MS.gene027538 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027538.t1 | MTR_5g035750 | 91.385 | 325 | 28 | 0 | 1 | 325 | 1 | 325 | 0.0 | 616 |
| MS.gene027538.t1 | MTR_5g035690 | 88.308 | 325 | 37 | 1 | 1 | 325 | 1 | 324 | 0.0 | 591 |
| MS.gene027538.t1 | MTR_5g035665 | 85.538 | 325 | 39 | 1 | 1 | 325 | 1 | 317 | 0.0 | 573 |
| MS.gene027538.t1 | MTR_5g035670 | 81.346 | 327 | 51 | 2 | 1 | 325 | 1 | 319 | 0.0 | 534 |
| MS.gene027538.t1 | MTR_5g035760 | 73.171 | 328 | 75 | 4 | 1 | 325 | 1 | 318 | 2.83e-164 | 463 |
| MS.gene027538.t1 | MTR_6g472110 | 48.529 | 340 | 154 | 8 | 1 | 324 | 1 | 335 | 5.37e-90 | 275 |
| MS.gene027538.t1 | MTR_6g016660 | 39.130 | 345 | 179 | 8 | 1 | 324 | 1 | 335 | 1.49e-69 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027538.t1 | AT1G13510 | 44.478 | 335 | 157 | 11 | 1 | 325 | 1 | 316 | 1.42e-83 | 258 |
| MS.gene027538.t1 | AT1G13480 | 43.695 | 341 | 164 | 11 | 1 | 327 | 1 | 327 | 1.29e-82 | 256 |
| MS.gene027538.t1 | AT1G13520 | 44.444 | 342 | 161 | 11 | 1 | 327 | 1 | 328 | 2.65e-82 | 255 |
| MS.gene027538.t1 | AT1G13490 | 44.478 | 335 | 160 | 8 | 1 | 325 | 1 | 319 | 1.08e-79 | 248 |
| MS.gene027538.t1 | AT1G13530 | 45.808 | 334 | 159 | 9 | 1 | 325 | 1 | 321 | 1.63e-79 | 248 |
| MS.gene027538.t1 | AT1G13470 | 43.243 | 333 | 164 | 10 | 1 | 325 | 1 | 316 | 1.09e-73 | 233 |
| MS.gene027538.t1 | AT1G13540 | 44.048 | 336 | 158 | 12 | 1 | 325 | 1 | 317 | 4.43e-73 | 231 |
| MS.gene027538.t1 | AT1G61600 | 38.506 | 348 | 178 | 7 | 1 | 319 | 1 | 341 | 4.04e-70 | 224 |
| MS.gene027538.t1 | AT1G13550 | 40.282 | 355 | 175 | 13 | 1 | 339 | 1 | 334 | 7.64e-70 | 223 |
| MS.gene027538.t1 | AT1G13490 | 42.216 | 334 | 150 | 8 | 1 | 325 | 1 | 300 | 1.42e-69 | 221 |
| MS.gene027538.t1 | AT1G13500 | 42.398 | 342 | 165 | 12 | 1 | 327 | 1 | 325 | 4.99e-67 | 216 |
Find 75 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCAGATGGAATTCCTTC+TGG | 0.172161 | 5.4:+40689793 | MS.gene027538:CDS |
| AATGGGAACAAGAAAGATTT+TGG | 0.199803 | 5.4:+40690262 | MS.gene027538:CDS |
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | 5.4:-40689174 | None:intergenic |
| TCAGAACAATCATTGAAAAT+TGG | 0.211604 | 5.4:-40689931 | None:intergenic |
| AAAATTGGAAAGTTGATATT+TGG | 0.225203 | 5.4:-40689916 | None:intergenic |
| CCTTCCTTCACAAACATAAA+TGG | 0.225580 | 5.4:-40689982 | None:intergenic |
| AGCCTAAAGCTTCGTTTAAA+TGG | 0.236452 | 5.4:-40689867 | None:intergenic |
| GCTCAAACTTACTGCTGTTT+TGG | 0.281432 | 5.4:+40689210 | MS.gene027538:CDS |
| CTTTCAGACCCACCGCCATC+AGG | 0.293327 | 5.4:+40689150 | MS.gene027538:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5.4:+40690221 | MS.gene027538:CDS |
| TTGAAGGGTTCCAAAGCTTT+TGG | 0.304910 | 5.4:-40689712 | None:intergenic |
| GCTTCTTCAGTGTAGGTGTT+TGG | 0.311170 | 5.4:-40689333 | None:intergenic |
| GAAGGAAGGAATGAATTTAA+AGG | 0.316001 | 5.4:+40689996 | MS.gene027538:CDS |
| GATAATGGTTTATTCAATAC+TGG | 0.323134 | 5.4:-40689366 | None:intergenic |
| GGTATAAACAATATTATAAC+TGG | 0.330323 | 5.4:+40689306 | MS.gene027538:CDS |
| CCTCAGATGGAATTCCTTCT+GGG | 0.337132 | 5.4:+40689794 | MS.gene027538:CDS |
| TATACCAGATGTATAATTGA+TGG | 0.339222 | 5.4:-40689289 | None:intergenic |
| TGATGTTAAACCAAAAGCTT+TGG | 0.376817 | 5.4:+40689702 | MS.gene027538:CDS |
| TAGTAGCGATTCGAAGATAA+TGG | 0.381577 | 5.4:-40689381 | None:intergenic |
| TTCGTTTAAATGGTAGTTGC+GGG | 0.385857 | 5.4:-40689857 | None:intergenic |
| AAAGTTGATATTTGGTAGCT+TGG | 0.386482 | 5.4:-40689908 | None:intergenic |
| TACCATTTAAACGAAGCTTT+AGG | 0.408285 | 5.4:+40689865 | MS.gene027538:CDS |
| CCTTTGAACTTGTACTAGCT+TGG | 0.411881 | 5.4:-40689639 | None:intergenic |
| TGAAGGGAAGGATGCTGCTT+GGG | 0.431448 | 5.4:+40690149 | MS.gene027538:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5.4:+40690046 | MS.gene027538:CDS |
| GTAACCATCAATTATACATC+TGG | 0.444032 | 5.4:+40689285 | MS.gene027538:CDS |
| ACAGAAGTTGCTAAGGTTGA+AGG | 0.447457 | 5.4:+40690132 | MS.gene027538:CDS |
| AGAAGGAAGGGGAAGTATCA+AGG | 0.456356 | 5.4:+40689411 | MS.gene027538:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5.4:+40690171 | MS.gene027538:CDS |
| GAATTCCTTCTGGGTTATTG+AGG | 0.465815 | 5.4:+40689803 | MS.gene027538:CDS |
| TACTTGTTGATAATCATTGA+AGG | 0.476536 | 5.4:-40689728 | None:intergenic |
| GAATTTGGCCCTGATGGCGG+TGG | 0.476667 | 5.4:-40689159 | None:intergenic |
| TTTGGATGGAATGCTGGGAA+TGG | 0.476924 | 5.4:+40690280 | MS.gene027538:CDS |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5.4:+40690210 | MS.gene027538:CDS |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.489041 | 5.4:+40690081 | MS.gene027538:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.4:+40689982 | MS.gene027538:CDS |
| TAGTACAAGTTCAAAGGAAG+AGG | 0.503151 | 5.4:+40689645 | MS.gene027538:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.507064 | 5.4:+40689394 | MS.gene027538:CDS |
| GCAAAATCAGTTGCCTCAGA+TGG | 0.507539 | 5.4:+40689781 | MS.gene027538:CDS |
| TCTGGGTTATTGAGGAAAAG+AGG | 0.508032 | 5.4:+40689811 | MS.gene027538:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.509676 | 5.4:-40689165 | None:intergenic |
| CCAAGCTAGTACAAGTTCAA+AGG | 0.520879 | 5.4:+40689639 | MS.gene027538:CDS |
| TGCTTGGGATGAAAATAGAT+TGG | 0.520934 | 5.4:+40690164 | MS.gene027538:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.522008 | 5.4:+40689398 | MS.gene027538:CDS |
| TGTTCTGAATCAGTGGTTGT+TGG | 0.524665 | 5.4:+40689946 | MS.gene027538:CDS |
| TACTATGTTATAAGAAGGAA+GGG | 0.531189 | 5.4:+40689399 | MS.gene027538:CDS |
| TTGAAGGGAAGGATGCTGCT+TGG | 0.532548 | 5.4:+40690148 | MS.gene027538:CDS |
| AAGTTGTTGAGGCAATGAAA+TGG | 0.534687 | 5.4:+40690244 | MS.gene027538:CDS |
| ATTTGGTAGCTTGGAACGCA+AGG | 0.538684 | 5.4:-40689899 | None:intergenic |
| TATTCAAACAGAAGTTGCTA+AGG | 0.547553 | 5.4:+40690125 | MS.gene027538:CDS |
| CAGAAGTTGCTAAGGTTGAA+GGG | 0.548831 | 5.4:+40690133 | MS.gene027538:CDS |
| CAATGATTGTTCTGAATCAG+TGG | 0.548989 | 5.4:+40689939 | MS.gene027538:CDS |
| ACTTGTTGATAATCATTGAA+GGG | 0.552020 | 5.4:-40689727 | None:intergenic |
| TTTCAGACCCACCGCCATCA+GGG | 0.554396 | 5.4:+40689151 | MS.gene027538:CDS |
| CTTCGTTTAAATGGTAGTTG+CGG | 0.556380 | 5.4:-40689858 | None:intergenic |
| GAAGGAAGGGGAAGTATCAA+GGG | 0.558683 | 5.4:+40689412 | MS.gene027538:CDS |
| AATTTGGCCCTGATGGCGGT+GGG | 0.564723 | 5.4:-40689158 | None:intergenic |
| CTGGGTTATTGAGGAAAAGA+GGG | 0.567801 | 5.4:+40689812 | MS.gene027538:CDS |
| AGTTGTTGAGGCAATGAAAT+GGG | 0.574296 | 5.4:+40690245 | MS.gene027538:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.4:+40689978 | MS.gene027538:CDS |
| AGTTGCTAAGGTTGAAGGGA+AGG | 0.586429 | 5.4:+40690137 | MS.gene027538:CDS |
| AGTGAGAGTAACAAAAGTTG+AGG | 0.593305 | 5.4:+40690309 | MS.gene027538:CDS |
| AAGGAAAATAGTGGAGAAGG+TGG | 0.602522 | 5.4:+40690084 | MS.gene027538:CDS |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5.4:+40690047 | MS.gene027538:CDS |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.614856 | 5.4:+40690233 | MS.gene027538:CDS |
| GAACATAGCTTCTTCAGTGT+AGG | 0.619148 | 5.4:-40689340 | None:intergenic |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.623216 | 5.4:+40689953 | MS.gene027538:CDS |
| GGTGGGTCTGAAAGAGCACT+AGG | 0.628671 | 5.4:-40689141 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+CGG | 0.637791 | 5.4:-40689162 | None:intergenic |
| CCCAGAAGGAATTCCATCTG+AGG | 0.646225 | 5.4:-40689794 | None:intergenic |
| AAAACTACAACATAAACATG+TGG | 0.651413 | 5.4:-40689674 | None:intergenic |
| TCGTTTAAATGGTAGTTGCG+GGG | 0.651549 | 5.4:-40689856 | None:intergenic |
| GGTTATTGAGGAAAAGAGGG+TGG | 0.667530 | 5.4:+40689815 | MS.gene027538:CDS |
| ACTATGTTATAAGAAGGAAG+GGG | 0.684429 | 5.4:+40689400 | MS.gene027538:CDS |
| TTATCTTGTGATATTAGACG+AGG | 0.694247 | 5.4:+40689185 | MS.gene027538:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATAATTATATTTTTGT+TGG | + | chr5.4:40689521-40689540 | MS.gene027538:intron | 10.0% |
| !! | ACAAGTAGAAATAATAAAAA+TGG | + | chr5.4:40689744-40689763 | MS.gene027538:CDS | 15.0% |
| !! | CAAGTAGAAATAATAAAAAT+GGG | + | chr5.4:40689745-40689764 | MS.gene027538:CDS | 15.0% |
| !! | ATAGATTCATAAAGTAATAG+TGG | + | chr5.4:40689577-40689596 | MS.gene027538:intron | 20.0% |
| !! | ATATTACAATACTCACAATT+GGG | - | chr5.4:40689500-40689519 | None:intergenic | 20.0% |
| !! | GGTATAAACAATATTATAAC+TGG | + | chr5.4:40689306-40689325 | MS.gene027538:CDS | 20.0% |
| !!! | AAAATTGGAAAGTTGATATT+TGG | - | chr5.4:40689919-40689938 | None:intergenic | 20.0% |
| !!! | ATTTTTTCAAAGGAAAATAG+TGG | + | chr5.4:40690075-40690094 | MS.gene027538:CDS | 20.0% |
| ! | AAAACTACAACATAAACATG+TGG | - | chr5.4:40689677-40689696 | None:intergenic | 25.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5.4:40689177-40689196 | None:intergenic | 25.0% |
| ! | CATATTACAATACTCACAAT+TGG | - | chr5.4:40689501-40689520 | None:intergenic | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5.4:40689399-40689418 | MS.gene027538:CDS | 25.0% |
| ! | TATACCAGATGTATAATTGA+TGG | - | chr5.4:40689292-40689311 | None:intergenic | 25.0% |
| ! | TCAGAACAATCATTGAAAAT+TGG | - | chr5.4:40689934-40689953 | None:intergenic | 25.0% |
| !! | GATAATGGTTTATTCAATAC+TGG | - | chr5.4:40689369-40689388 | None:intergenic | 25.0% |
| !!! | ACTTGTTGATAATCATTGAA+GGG | - | chr5.4:40689730-40689749 | None:intergenic | 25.0% |
| !!! | TACTTGTTGATAATCATTGA+AGG | - | chr5.4:40689731-40689750 | None:intergenic | 25.0% |
| !!! | TTGTTGGTAATTATCTTTCA+TGG | + | chr5.4:40689537-40689556 | MS.gene027538:intron | 25.0% |
| ACTATGTTATAAGAAGGAAG+GGG | + | chr5.4:40689400-40689419 | MS.gene027538:CDS | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5.4:40689394-40689413 | MS.gene027538:CDS | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5.4:40689398-40689417 | MS.gene027538:CDS | 30.0% | |
| GAAGGAAGGAATGAATTTAA+AGG | + | chr5.4:40689996-40690015 | MS.gene027538:CDS | 30.0% | |
| GTAACCATCAATTATACATC+TGG | + | chr5.4:40689285-40689304 | MS.gene027538:CDS | 30.0% | |
| TACCATTTAAACGAAGCTTT+AGG | + | chr5.4:40689865-40689884 | MS.gene027538:CDS | 30.0% | |
| TATTCAAACAGAAGTTGCTA+AGG | + | chr5.4:40690125-40690144 | MS.gene027538:CDS | 30.0% | |
| TGATGTTAAACCAAAAGCTT+TGG | + | chr5.4:40689702-40689721 | MS.gene027538:CDS | 30.0% | |
| TTATCTTGTGATATTAGACG+AGG | + | chr5.4:40689185-40689204 | MS.gene027538:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.4:40689978-40689997 | MS.gene027538:CDS | 30.0% | |
| ! | AATGGGAACAAGAAAGATTT+TGG | + | chr5.4:40690262-40690281 | MS.gene027538:CDS | 30.0% |
| ! | ACTAGGATTCATTTTGTACA+TGG | - | chr5.4:40689127-40689146 | None:intergenic | 30.0% |
| ! | ATGGTTACATTTTTGTTCTG+AGG | - | chr5.4:40689273-40689292 | None:intergenic | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.4:40690171-40690190 | MS.gene027538:CDS | 30.0% |
| ! | TGGTTACATTTTTGTTCTGA+GGG | - | chr5.4:40689272-40689291 | None:intergenic | 30.0% |
| !! | AAAGTTGATATTTGGTAGCT+TGG | - | chr5.4:40689911-40689930 | None:intergenic | 30.0% |
| !!! | AAGCTTTTGGTTTAACATCA+TGG | - | chr5.4:40689702-40689721 | None:intergenic | 30.0% |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5.4:40690065-40690084 | MS.gene027538:CDS | 30.0% |
| AAGTTGTTGAGGCAATGAAA+TGG | + | chr5.4:40690244-40690263 | MS.gene027538:CDS | 35.0% | |
| AGCCTAAAGCTTCGTTTAAA+TGG | - | chr5.4:40689870-40689889 | None:intergenic | 35.0% | |
| AGTTGTTGAGGCAATGAAAT+GGG | + | chr5.4:40690245-40690264 | MS.gene027538:CDS | 35.0% | |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5.4:40690233-40690252 | MS.gene027538:CDS | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.4:40689982-40690001 | MS.gene027538:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.4:40689985-40690004 | None:intergenic | 35.0% | |
| CTTCGTTTAAATGGTAGTTG+CGG | - | chr5.4:40689861-40689880 | None:intergenic | 35.0% | |
| TAGTACAAGTTCAAAGGAAG+AGG | + | chr5.4:40689645-40689664 | MS.gene027538:CDS | 35.0% | |
| TAGTAGCGATTCGAAGATAA+TGG | - | chr5.4:40689384-40689403 | None:intergenic | 35.0% | |
| TGCTTGGGATGAAAATAGAT+TGG | + | chr5.4:40690164-40690183 | MS.gene027538:CDS | 35.0% | |
| TTCGTTTAAATGGTAGTTGC+GGG | - | chr5.4:40689860-40689879 | None:intergenic | 35.0% | |
| ! | AAAGATTTTGGATGGAATGC+TGG | + | chr5.4:40690274-40690293 | MS.gene027538:CDS | 35.0% |
| ! | AAGATTTTGGATGGAATGCT+GGG | + | chr5.4:40690275-40690294 | MS.gene027538:CDS | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5.4:40690210-40690229 | MS.gene027538:CDS | 35.0% |
| ! | CAATGATTGTTCTGAATCAG+TGG | + | chr5.4:40689939-40689958 | MS.gene027538:CDS | 35.0% |
| ! | GGAACAAGAAAGATTTTGGA+TGG | + | chr5.4:40690266-40690285 | MS.gene027538:CDS | 35.0% |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5.4:40690081-40690100 | MS.gene027538:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.4:40690221-40690240 | MS.gene027538:CDS | 35.0% |
| !!! | ACATTTTTGTTCTGAGGGAT+AGG | - | chr5.4:40689267-40689286 | None:intergenic | 35.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.4:40689953-40689972 | MS.gene027538:CDS | 40.0% | |
| ACAGAAGTTGCTAAGGTTGA+AGG | + | chr5.4:40690132-40690151 | MS.gene027538:CDS | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5.4:40690046-40690065 | MS.gene027538:CDS | 40.0% | |
| ATACTCACAATTGGGATGAC+AGG | - | chr5.4:40689492-40689511 | None:intergenic | 40.0% | |
| CAGAAGTTGCTAAGGTTGAA+GGG | + | chr5.4:40690133-40690152 | MS.gene027538:CDS | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | + | chr5.4:40689639-40689658 | MS.gene027538:CDS | 40.0% | |
| CCTTTGAACTTGTACTAGCT+TGG | - | chr5.4:40689642-40689661 | None:intergenic | 40.0% | |
| CTGGGTTATTGAGGAAAAGA+GGG | + | chr5.4:40689812-40689831 | MS.gene027538:CDS | 40.0% | |
| GAACATAGCTTCTTCAGTGT+AGG | - | chr5.4:40689343-40689362 | None:intergenic | 40.0% | |
| GAATTCCTTCTGGGTTATTG+AGG | + | chr5.4:40689803-40689822 | MS.gene027538:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5.4:40690047-40690066 | MS.gene027538:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5.4:40689168-40689187 | None:intergenic | 40.0% | |
| TACTCACAATTGGGATGACA+GGG | - | chr5.4:40689491-40689510 | None:intergenic | 40.0% | |
| TCGTTTAAATGGTAGTTGCG+GGG | - | chr5.4:40689859-40689878 | None:intergenic | 40.0% | |
| TCTGGGTTATTGAGGAAAAG+AGG | + | chr5.4:40689811-40689830 | MS.gene027538:CDS | 40.0% | |
| ! | AAGGAAAATAGTGGAGAAGG+TGG | + | chr5.4:40690084-40690103 | MS.gene027538:CDS | 40.0% |
| ! | CTTTTCCTCAATAACCCAGA+AGG | - | chr5.4:40689811-40689830 | None:intergenic | 40.0% |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | + | chr5.4:40689946-40689965 | MS.gene027538:CDS | 40.0% |
| ! | TTGAAGGGTTCCAAAGCTTT+TGG | - | chr5.4:40689715-40689734 | None:intergenic | 40.0% |
| !! | GCTCAAACTTACTGCTGTTT+TGG | + | chr5.4:40689210-40689229 | MS.gene027538:CDS | 40.0% |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5.4:40690181-40690200 | MS.gene027538:CDS | 40.0% |
| AGTTGCTAAGGTTGAAGGGA+AGG | + | chr5.4:40690137-40690156 | MS.gene027538:CDS | 45.0% | |
| CCTCAGATGGAATTCCTTCT+GGG | + | chr5.4:40689794-40689813 | MS.gene027538:CDS | 45.0% | |
| GCAAAATCAGTTGCCTCAGA+TGG | + | chr5.4:40689781-40689800 | MS.gene027538:CDS | 45.0% | |
| GCTTCTTCAGTGTAGGTGTT+TGG | - | chr5.4:40689336-40689355 | None:intergenic | 45.0% | |
| GGTTATTGAGGAAAAGAGGG+TGG | + | chr5.4:40689815-40689834 | MS.gene027538:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+TGG | + | chr5.4:40690280-40690299 | MS.gene027538:CDS | 45.0% | |
| ! | ATTTGGTAGCTTGGAACGCA+AGG | - | chr5.4:40689902-40689921 | None:intergenic | 45.0% |
| !! | AGAAGGAAGGGGAAGTATCA+AGG | + | chr5.4:40689411-40689430 | MS.gene027538:CDS | 45.0% |
| !! | GAAGGAAGGGGAAGTATCAA+GGG | + | chr5.4:40689412-40689431 | MS.gene027538:CDS | 45.0% |
| !!! | CTGCTGTTTTGGTTTGTGCA+AGG | + | chr5.4:40689221-40689240 | MS.gene027538:CDS | 45.0% |
| CCCAGAAGGAATTCCATCTG+AGG | - | chr5.4:40689797-40689816 | None:intergenic | 50.0% | |
| CTTGAATTTGGCCCTGATGG+CGG | - | chr5.4:40689165-40689184 | None:intergenic | 50.0% | |
| GCCTCAGATGGAATTCCTTC+TGG | + | chr5.4:40689793-40689812 | MS.gene027538:CDS | 50.0% | |
| TTGAAGGGAAGGATGCTGCT+TGG | + | chr5.4:40690148-40690167 | MS.gene027538:CDS | 50.0% | |
| ! | TGAAGGGAAGGATGCTGCTT+GGG | + | chr5.4:40690149-40690168 | MS.gene027538:CDS | 50.0% |
| TTTCAGACCCACCGCCATCA+GGG | + | chr5.4:40689151-40689170 | MS.gene027538:CDS | 55.0% | |
| !! | AATTTGGCCCTGATGGCGGT+GGG | - | chr5.4:40689161-40689180 | None:intergenic | 55.0% |
| !! | GGTGGGTCTGAAAGAGCACT+AGG | - | chr5.4:40689144-40689163 | None:intergenic | 55.0% |
| CTTTCAGACCCACCGCCATC+AGG | + | chr5.4:40689150-40689169 | MS.gene027538:CDS | 60.0% | |
| !! | GAATTTGGCCCTGATGGCGG+TGG | - | chr5.4:40689162-40689181 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 40689102 | 40690329 | 40689102 | ID=MS.gene027538 |
| chr5.4 | mRNA | 40689102 | 40690329 | 40689102 | ID=MS.gene027538.t1;Parent=MS.gene027538 |
| chr5.4 | exon | 40689102 | 40689433 | 40689102 | ID=MS.gene027538.t1.exon1;Parent=MS.gene027538.t1 |
| chr5.4 | CDS | 40689102 | 40689433 | 40689102 | ID=cds.MS.gene027538.t1;Parent=MS.gene027538.t1 |
| chr5.4 | exon | 40689639 | 40690329 | 40689639 | ID=MS.gene027538.t1.exon2;Parent=MS.gene027538.t1 |
| chr5.4 | CDS | 40689639 | 40690329 | 40689639 | ID=cds.MS.gene027538.t1;Parent=MS.gene027538.t1 |
| Gene Sequence |
| Protein sequence |
