Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45117.t1 | RHN55134.1 | 78.6 | 449 | 33 | 2 | 1 | 449 | 31 | 416 | 2.10E-195 | 691.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45117.t1 | G7K475 | 78.6 | 449 | 33 | 2 | 1 | 449 | 1 | 386 | 1.5e-195 | 691.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45117 | MS.gene68295 | PPI |
| MS.gene45117 | MS.gene78745 | PPI |
| MS.gene68296 | MS.gene45117 | PPI |
| MS.gene45117 | MS.gene027538 | PPI |
| MS.gene45117 | MS.gene027536 | PPI |
| MS.gene45117 | MS.gene45120 | PPI |
| MS.gene45117 | MS.gene45118 | PPI |
| MS.gene45117 | MS.gene027540 | PPI |
| MS.gene68297 | MS.gene45117 | PPI |
| MS.gene45115 | MS.gene45117 | PPI |
| MS.gene45117 | MS.gene027534 | PPI |
| MS.gene45117 | MS.gene042700 | PPI |
| MS.gene45117 | MS.gene45114 | PPI |
| MS.gene45117 | MS.gene027535 | PPI |
| MS.gene45117 | MS.gene027539 | PPI |
| MS.gene45117 | MS.gene45116 | PPI |
| MS.gene45117 | MS.gene45119 | PPI |
| MS.gene45117 | MS.gene027537 | PPI |
| MS.gene45117 | MS.gene68292 | PPI |
| MS.gene68295 | MS.gene45117 | PPI |
| MS.gene45117 | MS.gene43935 | PPI |
| MS.gene45117 | MS.gene68298 | PPI |
| MS.gene45117 | MS.gene027543 | PPI |
| MS.gene045965 | MS.gene45117 | PPI |
| MS.gene45117 | MS.gene053932 | PPI |
| MS.gene45117 | MS.gene045965 | PPI |
| MS.gene027544 | MS.gene45117 | PPI |
| MS.gene45117 | MS.gene43936 | PPI |
| MS.gene68293 | MS.gene45117 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45117.t1 | MTR_5g035690 | 92.025 | 326 | 26 | 0 | 124 | 449 | 61 | 386 | 0.0 | 622 |
| MS.gene45117.t1 | MTR_5g035690 | 87.500 | 80 | 7 | 1 | 1 | 80 | 1 | 77 | 1.63e-38 | 144 |
| MS.gene45117.t1 | MTR_5g035665 | 91.558 | 308 | 26 | 0 | 142 | 449 | 72 | 379 | 0.0 | 587 |
| MS.gene45117.t1 | MTR_5g035665 | 92.537 | 67 | 5 | 0 | 1 | 67 | 1 | 67 | 3.75e-35 | 134 |
| MS.gene45117.t1 | MTR_5g035750 | 87.616 | 323 | 39 | 1 | 128 | 449 | 65 | 387 | 0.0 | 582 |
| MS.gene45117.t1 | MTR_5g035750 | 86.567 | 67 | 9 | 0 | 1 | 67 | 1 | 67 | 5.50e-33 | 129 |
| MS.gene45117.t1 | MTR_5g035670 | 81.505 | 319 | 56 | 2 | 133 | 449 | 64 | 381 | 0.0 | 526 |
| MS.gene45117.t1 | MTR_5g035670 | 92.537 | 67 | 5 | 0 | 1 | 67 | 1 | 67 | 1.40e-33 | 130 |
| MS.gene45117.t1 | MTR_5g035760 | 78.827 | 307 | 63 | 2 | 145 | 449 | 74 | 380 | 1.41e-175 | 496 |
| MS.gene45117.t1 | MTR_5g035760 | 81.250 | 64 | 12 | 0 | 1 | 64 | 1 | 64 | 2.36e-25 | 107 |
| MS.gene45117.t1 | MTR_6g472110 | 48.864 | 352 | 151 | 12 | 119 | 449 | 56 | 399 | 1.53e-97 | 298 |
| MS.gene45117.t1 | MTR_6g472110 | 53.030 | 66 | 31 | 0 | 1 | 66 | 1 | 66 | 6.73e-16 | 79.7 |
| MS.gene45117.t1 | MTR_6g016660 | 41.896 | 327 | 168 | 7 | 142 | 449 | 75 | 398 | 5.51e-75 | 240 |
| MS.gene45117.t1 | MTR_6g016660 | 45.588 | 68 | 35 | 1 | 1 | 66 | 1 | 68 | 8.41e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45117.t1 | AT1G13480 | 41.739 | 345 | 174 | 11 | 119 | 449 | 56 | 387 | 3.31e-77 | 246 |
| MS.gene45117.t1 | AT1G13480 | 48.101 | 79 | 39 | 1 | 1 | 79 | 1 | 77 | 3.00e-15 | 77.8 |
| MS.gene45117.t1 | AT1G13510 | 41.349 | 341 | 177 | 10 | 119 | 449 | 53 | 380 | 1.98e-75 | 241 |
| MS.gene45117.t1 | AT1G13510 | 51.429 | 70 | 31 | 2 | 1 | 67 | 1 | 70 | 4.64e-14 | 73.9 |
| MS.gene45117.t1 | AT1G13470 | 46.372 | 317 | 151 | 10 | 142 | 449 | 72 | 378 | 4.84e-75 | 240 |
| MS.gene45117.t1 | AT1G13520 | 43.413 | 334 | 162 | 11 | 133 | 449 | 64 | 387 | 7.70e-75 | 239 |
| MS.gene45117.t1 | AT1G13520 | 53.030 | 66 | 31 | 0 | 1 | 66 | 1 | 66 | 1.92e-14 | 75.1 |
| MS.gene45117.t1 | AT1G13530 | 42.169 | 332 | 167 | 12 | 133 | 449 | 64 | 385 | 2.44e-74 | 238 |
| MS.gene45117.t1 | AT1G13530 | 50.000 | 66 | 33 | 0 | 1 | 66 | 1 | 66 | 2.79e-13 | 71.6 |
| MS.gene45117.t1 | AT1G13540 | 42.183 | 339 | 173 | 10 | 121 | 449 | 56 | 381 | 8.93e-74 | 236 |
| MS.gene45117.t1 | AT1G13540 | 48.571 | 70 | 32 | 2 | 1 | 66 | 1 | 70 | 7.18e-13 | 70.5 |
| MS.gene45117.t1 | AT1G13490 | 44.545 | 330 | 159 | 11 | 133 | 449 | 64 | 382 | 1.76e-72 | 233 |
| MS.gene45117.t1 | AT1G13490 | 48.485 | 66 | 34 | 0 | 1 | 66 | 1 | 66 | 5.68e-14 | 73.6 |
| MS.gene45117.t1 | AT1G13500 | 44.578 | 332 | 158 | 13 | 133 | 449 | 66 | 386 | 1.94e-70 | 228 |
| MS.gene45117.t1 | AT1G61600 | 36.483 | 381 | 200 | 8 | 109 | 449 | 43 | 421 | 1.56e-67 | 221 |
| MS.gene45117.t1 | AT1G61600 | 45.588 | 68 | 35 | 1 | 1 | 66 | 1 | 68 | 6.52e-12 | 67.4 |
| MS.gene45117.t1 | AT1G13490 | 42.249 | 329 | 149 | 11 | 133 | 449 | 64 | 363 | 1.32e-64 | 212 |
| MS.gene45117.t1 | AT1G13490 | 48.485 | 66 | 34 | 0 | 1 | 66 | 1 | 66 | 5.19e-14 | 73.6 |
| MS.gene45117.t1 | AT1G13550 | 40.184 | 326 | 168 | 12 | 138 | 446 | 70 | 385 | 1.46e-62 | 207 |
| MS.gene45117.t1 | AT1G13550 | 56.250 | 64 | 28 | 0 | 1 | 64 | 1 | 64 | 3.80e-17 | 83.2 |
Find 105 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATCAAATTAGAAGTAAA+TGG | 0.204545 | 5.1:+26331713 | MS.gene45117:CDS |
| TCGGAACAATCATTGAAAAT+TGG | 0.211604 | 5.1:-26331202 | None:intergenic |
| CCTGGGTTATTGAAGGAAAA+AGG | 0.215235 | 5.1:+26331082 | MS.gene45117:CDS |
| ATCACAAGATAACTTGAATT+TGG | 0.219309 | 5.1:-26330264 | None:intergenic |
| CCTTCCTTCACAAACATAAA+TGG | 0.225580 | 5.1:-26331253 | None:intergenic |
| AAAATTGGAAAGTTGAAATT+TGG | 0.232410 | 5.1:-26331187 | None:intergenic |
| AAGAAGGAAGGGGAAGTATC+AGG | 0.245930 | 5.1:+26330686 | MS.gene45117:CDS |
| GTAACAAAAGTTGAAGAATT+TGG | 0.252999 | 5.1:+26331586 | MS.gene45117:CDS |
| AGCCTAAAGCTTGGCTTAAA+TGG | 0.254543 | 5.1:-26331138 | None:intergenic |
| GAGGAGAATGGATACAAAAT+TGG | 0.267080 | 5.1:+26331666 | MS.gene45117:CDS |
| GCACAAACTTACTCTTGTTT+TGG | 0.306130 | 5.1:+26330300 | MS.gene45117:CDS |
| GCCTCTGATGGAATTCCTCC+TGG | 0.316217 | 5.1:+26331064 | MS.gene45117:CDS |
| TTCAAGTTATCTTGTGATAT+CGG | 0.316747 | 5.1:+26330269 | MS.gene45117:CDS |
| CGTCAAACTGGTTATTCATT+TGG | 0.324238 | 5.1:+26330504 | MS.gene45117:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.348614 | 5.1:+26331492 | MS.gene45117:CDS |
| AGTCAAACTGGTTATTCATT+TGG | 0.363826 | 5.1:+26330414 | MS.gene45117:CDS |
| TTGAAGGGCTCCAAAGCTAT+TGG | 0.369259 | 5.1:-26330983 | None:intergenic |
| TGAAGGAAAGGATGCTGTTT+GGG | 0.370832 | 5.1:+26331420 | MS.gene45117:CDS |
| AAAGTTGAAATTTGGTAGCT+TGG | 0.373273 | 5.1:-26331179 | None:intergenic |
| TATTATTCATATTATTCATC+TGG | 0.375589 | 5.1:+26330384 | MS.gene45117:CDS |
| AGAAGGAAGGGGAAGTATCA+GGG | 0.380635 | 5.1:+26330687 | MS.gene45117:CDS |
| TTGGCTTAAATGGTAGTTGC+GGG | 0.384872 | 5.1:-26331128 | None:intergenic |
| GACAATGGTTGATTCAATAC+TGG | 0.394738 | 5.1:-26330642 | None:intergenic |
| CCTTTGAACTTGTATTAGCT+TGG | 0.394949 | 5.1:-26330910 | None:intergenic |
| AAATGGGAACAAAGAAGGTT+TGG | 0.394970 | 5.1:+26331532 | MS.gene45117:CDS |
| TTGAAGGAAAGGATGCTGTT+TGG | 0.397380 | 5.1:+26331419 | MS.gene45117:CDS |
| TGATGTTAAACCAATAGCTT+TGG | 0.399590 | 5.1:+26330973 | MS.gene45117:CDS |
| AAGTTATTCTTTGAGGAGAA+TGG | 0.403630 | 5.1:+26331654 | MS.gene45117:CDS |
| TTTGGTGTAAACAGTCAAAC+TGG | 0.418830 | 5.1:+26330432 | MS.gene45117:CDS |
| TTTGGTGTAAACAGTCAAAC+TGG | 0.418830 | 5.1:+26330522 | MS.gene45117:CDS |
| CTTTCAGATCCACCACCATC+AGG | 0.422039 | 5.1:+26330240 | MS.gene45117:CDS |
| CTTTCCAACAACCACTGATT+CGG | 0.426945 | 5.1:-26331221 | None:intergenic |
| ACTGAAGTTGCTAAGGTTGA+AGG | 0.427895 | 5.1:+26331403 | MS.gene45117:CDS |
| AGAAGGTTTGGATGGAATGC+TGG | 0.431581 | 5.1:+26331544 | MS.gene45117:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5.1:+26331317 | MS.gene45117:CDS |
| TACCATTTAAGCCAAGCTTT+AGG | 0.432191 | 5.1:+26331136 | MS.gene45117:CDS |
| CGTCAAACTAGTTATTCATC+TGG | 0.443881 | 5.1:+26330564 | MS.gene45117:CDS |
| AGTCAAACTGGTTATTCATC+TGG | 0.446224 | 5.1:+26330474 | MS.gene45117:CDS |
| AGTCAAACTGGTTATTCATC+TGG | 0.446224 | 5.1:+26330534 | MS.gene45117:CDS |
| TCTGGTGTAAACAGTCAAAC+TGG | 0.446885 | 5.1:+26330402 | MS.gene45117:CDS |
| CAAATGAATAACCAGTTTGA+CGG | 0.447162 | 5.1:-26330503 | None:intergenic |
| GCCCTTCAATGATTATCAAC+AGG | 0.448229 | 5.1:+26330997 | MS.gene45117:CDS |
| CAGATGAATAACTAGTTTGA+CGG | 0.452845 | 5.1:-26330563 | None:intergenic |
| TCTGGTGTAAACCGTCAAAC+TGG | 0.453591 | 5.1:+26330492 | MS.gene45117:CDS |
| TGAATAATATGAATAATAGA+TGG | 0.458234 | 5.1:-26330379 | None:intergenic |
| TCGGGTGAAAACAGTCAAAC+TGG | 0.459314 | 5.1:+26330462 | MS.gene45117:CDS |
| GCAAAATCCGTTGCCTCTGA+TGG | 0.460171 | 5.1:+26331052 | MS.gene45117:CDS |
| GACTTCTTTCCATGTACAAA+AGG | 0.463091 | 5.1:+26330205 | MS.gene45117:CDS |
| TGGTTGAAAGTTATTCTTTG+AGG | 0.464463 | 5.1:+26331647 | MS.gene45117:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5.1:+26331442 | MS.gene45117:CDS |
| TCTGGTGTAAACAGTCAAAC+AGG | 0.465795 | 5.1:+26330582 | MS.gene45117:CDS |
| TACCTGTTGATAATCATTGA+AGG | 0.466990 | 5.1:-26330999 | None:intergenic |
| AATTCCTCCTGGGTTATTGA+AGG | 0.467359 | 5.1:+26331075 | MS.gene45117:CDS |
| GTTTGGATGGAATGCTGGGA+AGG | 0.467693 | 5.1:+26331549 | MS.gene45117:CDS |
| TTAGCAACTTCAGTTTGAAT+CGG | 0.472026 | 5.1:-26331394 | None:intergenic |
| ACATCAAATTAGAAGTAAAT+GGG | 0.488523 | 5.1:+26331714 | MS.gene45117:CDS |
| GAATTTGGCCCTGATGGTGG+TGG | 0.488919 | 5.1:-26330249 | None:intergenic |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.489041 | 5.1:+26331352 | MS.gene45117:CDS |
| GAAATTTAGTAGTTATGTGT+TGG | 0.494117 | 5.1:+26331627 | MS.gene45117:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.1:+26331253 | MS.gene45117:CDS |
| TGTTTGGGATGAAAATAGAT+TGG | 0.498350 | 5.1:+26331435 | MS.gene45117:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.507064 | 5.1:+26330670 | MS.gene45117:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.507438 | 5.1:+26331550 | MS.gene45117:CDS |
| CAGTCAAACTGGTTATTCAT+CGG | 0.508046 | 5.1:+26330443 | MS.gene45117:CDS |
| AGTCAAACTGGTTATTCATC+GGG | 0.512495 | 5.1:+26330444 | MS.gene45117:CDS |
| CCTCTGATGGAATTCCTCCT+GGG | 0.518745 | 5.1:+26331065 | MS.gene45117:CDS |
| GGGAACAAAGAAGGTTTGGA+TGG | 0.521569 | 5.1:+26331536 | MS.gene45117:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.522008 | 5.1:+26330674 | MS.gene45117:CDS |
| CAATGAAATGGGAACAAAGA+AGG | 0.524360 | 5.1:+26331527 | MS.gene45117:CDS |
| TAATACAAGTTCAAAGGAAG+AGG | 0.529363 | 5.1:+26330916 | MS.gene45117:CDS |
| GATTCAAACTGAAGTTGCTA+AGG | 0.530396 | 5.1:+26331396 | MS.gene45117:CDS |
| TACTATGTTATAAGAAGGAA+GGG | 0.531189 | 5.1:+26330675 | MS.gene45117:CDS |
| ATTTGGTAGCTTGGAACGCA+AGG | 0.531864 | 5.1:-26331170 | None:intergenic |
| AAGTTGTTGAGGCAATGAAA+TGG | 0.534687 | 5.1:+26331515 | MS.gene45117:CDS |
| AATTTGGTGGAACAAACAAA+TGG | 0.536388 | 5.1:+26331602 | MS.gene45117:CDS |
| AGTGTTGATGAGAAAAGTGT+TGG | 0.538886 | 5.1:+26331481 | MS.gene45117:CDS |
| CAATGATTGTTCCGAATCAG+TGG | 0.541309 | 5.1:+26331210 | MS.gene45117:CDS |
| ACCTGTTGATAATCATTGAA+GGG | 0.546054 | 5.1:-26330998 | None:intergenic |
| ACAAAAGTTGAAGAATTTGG+TGG | 0.548037 | 5.1:+26331589 | MS.gene45117:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | 5.1:-26330255 | None:intergenic |
| CCAAGCTAATACAAGTTCAA+AGG | 0.554728 | 5.1:+26330910 | MS.gene45117:CDS |
| GAAGGAAGGGGAAGTATCAG+GGG | 0.556448 | 5.1:+26330688 | MS.gene45117:CDS |
| GAAGGTTTGGATGGAATGCT+GGG | 0.561735 | 5.1:+26331545 | MS.gene45117:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.563048 | 5.1:+26331224 | MS.gene45117:CDS |
| AATCATTTGAGCCTAAAGCT+TGG | 0.566503 | 5.1:-26331147 | None:intergenic |
| TTATCTTGTGATATCGGATG+AGG | 0.567170 | 5.1:+26330275 | MS.gene45117:CDS |
| AGTTGTTGAGGCAATGAAAT+GGG | 0.574296 | 5.1:+26331516 | MS.gene45117:CDS |
| CTTGGCTTAAATGGTAGTTG+CGG | 0.576138 | 5.1:-26331129 | None:intergenic |
| AGTTGCTAAGGTTGAAGGAA+AGG | 0.576444 | 5.1:+26331408 | MS.gene45117:CDS |
| TGTTCCGAATCAGTGGTTGT+TGG | 0.577833 | 5.1:+26331217 | MS.gene45117:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.1:+26331249 | MS.gene45117:CDS |
| AGGAATTCCATCAGAGGCAA+CGG | 0.588713 | 5.1:-26331059 | None:intergenic |
| AAGGAAAATAGTGGAGAAGG+TGG | 0.602522 | 5.1:+26331355 | MS.gene45117:CDS |
| CCCAGGAGGAATTCCATCAG+AGG | 0.605151 | 5.1:-26331065 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | 5.1:-26330252 | None:intergenic |
| GGTGGATCTGAAAGAGCACT+AGG | 0.608877 | 5.1:-26330231 | None:intergenic |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5.1:+26331318 | MS.gene45117:CDS |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.614856 | 5.1:+26331504 | MS.gene45117:CDS |
| GAACATAGCTTCTTCACTGT+AGG | 0.624230 | 5.1:-26330616 | None:intergenic |
| TTTCAGATCCACCACCATCA+GGG | 0.624409 | 5.1:+26330241 | MS.gene45117:CDS |
| TCTTGTGATATCGGATGAGG+AGG | 0.644030 | 5.1:+26330278 | MS.gene45117:CDS |
| TGGCTTAAATGGTAGTTGCG+GGG | 0.644475 | 5.1:-26331127 | None:intergenic |
| AAAACCACAATAAAAGCATG+TGG | 0.665724 | 5.1:-26330945 | None:intergenic |
| TAGTAGCGATTCGAAGACAA+TGG | 0.670254 | 5.1:-26330657 | None:intergenic |
| ACTATGTTATAAGAAGGAAG+GGG | 0.684429 | 5.1:+26330676 | MS.gene45117:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTACAATATTCTTTGT+TGG | - | chr5.1:26330771-26330790 | None:intergenic | 15.0% |
| !! | TATTATTCATATTATTCATC+TGG | + | chr5.1:26330384-26330403 | MS.gene45117:CDS | 15.0% |
| !! | TATTTACAATATTCTTTGTT+GGG | - | chr5.1:26330770-26330789 | None:intergenic | 15.0% |
| !! | TGAATAATATGAATAATAGA+TGG | - | chr5.1:26330382-26330401 | None:intergenic | 15.0% |
| !!! | AGACATAATTATATTTTTGT+TGG | + | chr5.1:26330792-26330811 | MS.gene45117:intron | 15.0% |
| !! | AAAATTGGAAAGTTGAAATT+TGG | - | chr5.1:26331190-26331209 | None:intergenic | 20.0% |
| !! | ACATCAAATTAGAAGTAAAT+GGG | + | chr5.1:26331714-26331733 | MS.gene45117:CDS | 20.0% |
| !! | AGGTAGAAATAATCAAAAAA+AGG | + | chr5.1:26331017-26331036 | MS.gene45117:CDS | 20.0% |
| !! | ATAGATTCATAATGTAATAG+TGG | + | chr5.1:26330848-26330867 | MS.gene45117:intron | 20.0% |
| !!! | ATTTTTTCAAAGGAAAATAG+TGG | + | chr5.1:26331346-26331365 | MS.gene45117:CDS | 20.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5.1:26330267-26330286 | None:intergenic | 25.0% |
| ! | CACATCAAATTAGAAGTAAA+TGG | + | chr5.1:26331713-26331732 | MS.gene45117:CDS | 25.0% |
| ! | GAAATTTAGTAGTTATGTGT+TGG | + | chr5.1:26331627-26331646 | MS.gene45117:CDS | 25.0% |
| ! | GTAACAAAAGTTGAAGAATT+TGG | + | chr5.1:26331586-26331605 | MS.gene45117:CDS | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5.1:26330675-26330694 | MS.gene45117:CDS | 25.0% |
| !! | ATGGTTAAATTTTTGTTCTG+AGG | - | chr5.1:26330363-26330382 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+CGG | + | chr5.1:26330269-26330288 | MS.gene45117:CDS | 25.0% |
| !!! | TTGTTGGTAATTAACTTTCA+TGG | + | chr5.1:26330808-26330827 | MS.gene45117:intron | 25.0% |
| ACAAAAGTTGAAGAATTTGG+TGG | + | chr5.1:26331589-26331608 | MS.gene45117:CDS | 30.0% | |
| ACTATGTTATAAGAAGGAAG+GGG | + | chr5.1:26330676-26330695 | MS.gene45117:CDS | 30.0% | |
| AGTCAAACTGGTTATTCATT+TGG | + | chr5.1:26330414-26330433 | MS.gene45117:CDS | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5.1:26330670-26330689 | MS.gene45117:CDS | 30.0% | |
| CAAATGAATAACCAGTTTGA+CGG | - | chr5.1:26330416-26330435 | None:intergenic | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5.1:26330674-26330693 | MS.gene45117:CDS | 30.0% | |
| TAATACAAGTTCAAAGGAAG+AGG | + | chr5.1:26330916-26330935 | MS.gene45117:CDS | 30.0% | |
| TACAATATTCTTTGTTGGGA+TGG | - | chr5.1:26330766-26330785 | None:intergenic | 30.0% | |
| TCGGAACAATCATTGAAAAT+TGG | - | chr5.1:26331205-26331224 | None:intergenic | 30.0% | |
| TGATGTTAAACCAATAGCTT+TGG | + | chr5.1:26330973-26330992 | MS.gene45117:CDS | 30.0% | |
| TGGTTGAAAGTTATTCTTTG+AGG | + | chr5.1:26331647-26331666 | MS.gene45117:CDS | 30.0% | |
| TTAGCAACTTCAGTTTGAAT+CGG | - | chr5.1:26331397-26331416 | None:intergenic | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.1:26331249-26331268 | MS.gene45117:CDS | 30.0% | |
| ! | AAAACCACAATAAAAGCATG+TGG | - | chr5.1:26330948-26330967 | None:intergenic | 30.0% |
| ! | AAAGTTGAAATTTGGTAGCT+TGG | - | chr5.1:26331182-26331201 | None:intergenic | 30.0% |
| ! | AAGTTATTCTTTGAGGAGAA+TGG | + | chr5.1:26331654-26331673 | MS.gene45117:CDS | 30.0% |
| ! | AATTTGGTGGAACAAACAAA+TGG | + | chr5.1:26331602-26331621 | MS.gene45117:CDS | 30.0% |
| ! | CAGATGAATAACTAGTTTGA+CGG | - | chr5.1:26330566-26330585 | None:intergenic | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.1:26331442-26331461 | MS.gene45117:CDS | 30.0% |
| ! | TGTTTGGGATGAAAATAGAT+TGG | + | chr5.1:26331435-26331454 | MS.gene45117:CDS | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5.1:26331001-26331020 | None:intergenic | 30.0% |
| !! | TACCTGTTGATAATCATTGA+AGG | - | chr5.1:26331002-26331021 | None:intergenic | 30.0% |
| !!! | AAATTTTTGTTCTGAGGTAG+AGG | - | chr5.1:26330357-26330376 | None:intergenic | 30.0% |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5.1:26331336-26331355 | MS.gene45117:CDS | 30.0% |
| AAATGGGAACAAAGAAGGTT+TGG | + | chr5.1:26331532-26331551 | MS.gene45117:CDS | 35.0% | |
| AAGTTGTTGAGGCAATGAAA+TGG | + | chr5.1:26331515-26331534 | MS.gene45117:CDS | 35.0% | |
| AATCATTTGAGCCTAAAGCT+TGG | - | chr5.1:26331150-26331169 | None:intergenic | 35.0% | |
| AGTCAAACTGGTTATTCATC+GGG | + | chr5.1:26330444-26330463 | MS.gene45117:CDS | 35.0% | |
| AGTCAAACTGGTTATTCATC+TGG | + | chr5.1:26330444-26330463 | MS.gene45117:CDS | 35.0% | |
| AGTTGTTGAGGCAATGAAAT+GGG | + | chr5.1:26331516-26331535 | MS.gene45117:CDS | 35.0% | |
| ATATTCTTTGTTGGGATGGA+AGG | - | chr5.1:26330762-26330781 | None:intergenic | 35.0% | |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5.1:26331504-26331523 | MS.gene45117:CDS | 35.0% | |
| CAATGAAATGGGAACAAAGA+AGG | + | chr5.1:26331527-26331546 | MS.gene45117:CDS | 35.0% | |
| CAGTCAAACTGGTTATTCAT+CGG | + | chr5.1:26330413-26330432 | MS.gene45117:CDS | 35.0% | |
| CCAAGCTAATACAAGTTCAA+AGG | + | chr5.1:26330910-26330929 | MS.gene45117:CDS | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.1:26331253-26331272 | MS.gene45117:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.1:26331256-26331275 | None:intergenic | 35.0% | |
| CCTTTGAACTTGTATTAGCT+TGG | - | chr5.1:26330913-26330932 | None:intergenic | 35.0% | |
| CGTCAAACTAGTTATTCATC+TGG | + | chr5.1:26330564-26330583 | MS.gene45117:CDS | 35.0% | |
| CGTCAAACTGGTTATTCATT+TGG | + | chr5.1:26330504-26330523 | MS.gene45117:CDS | 35.0% | |
| CTGGGTTATTGAAGGAAAAA+GGG | + | chr5.1:26331083-26331102 | MS.gene45117:CDS | 35.0% | |
| GACTTCTTTCCATGTACAAA+AGG | + | chr5.1:26330205-26330224 | MS.gene45117:CDS | 35.0% | |
| GAGGAGAATGGATACAAAAT+TGG | + | chr5.1:26331666-26331685 | MS.gene45117:CDS | 35.0% | |
| GATTCAAACTGAAGTTGCTA+AGG | + | chr5.1:26331396-26331415 | MS.gene45117:CDS | 35.0% | |
| TACCATTTAAGCCAAGCTTT+AGG | + | chr5.1:26331136-26331155 | MS.gene45117:CDS | 35.0% | |
| TATTCTTTGTTGGGATGGAA+GGG | - | chr5.1:26330761-26330780 | None:intergenic | 35.0% | |
| TTATCTTGTGATATCGGATG+AGG | + | chr5.1:26330275-26330294 | MS.gene45117:CDS | 35.0% | |
| ! | ACTAGGATTCCTTTTGTACA+TGG | - | chr5.1:26330217-26330236 | None:intergenic | 35.0% |
| ! | ATGACCACATGCTTTTATTG+TGG | + | chr5.1:26330941-26330960 | MS.gene45117:CDS | 35.0% |
| ! | GACAATGGTTGATTCAATAC+TGG | - | chr5.1:26330645-26330664 | None:intergenic | 35.0% |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5.1:26331352-26331371 | MS.gene45117:CDS | 35.0% |
| ! | TTTGGTGTAAACAGTCAAAC+TGG | + | chr5.1:26330432-26330451 | MS.gene45117:CDS | 35.0% |
| !! | AGTGTTGATGAGAAAAGTGT+TGG | + | chr5.1:26331481-26331500 | MS.gene45117:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.1:26331492-26331511 | MS.gene45117:CDS | 35.0% |
| !! | GCACAAACTTACTCTTGTTT+TGG | + | chr5.1:26330300-26330319 | MS.gene45117:CDS | 35.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.1:26331224-26331243 | MS.gene45117:CDS | 40.0% | |
| AATTCCTCCTGGGTTATTGA+AGG | + | chr5.1:26331075-26331094 | MS.gene45117:CDS | 40.0% | |
| ACTGAAGTTGCTAAGGTTGA+AGG | + | chr5.1:26331403-26331422 | MS.gene45117:CDS | 40.0% | |
| AGCCTAAAGCTTGGCTTAAA+TGG | - | chr5.1:26331141-26331160 | None:intergenic | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5.1:26331317-26331336 | MS.gene45117:CDS | 40.0% | |
| AGTTGCTAAGGTTGAAGGAA+AGG | + | chr5.1:26331408-26331427 | MS.gene45117:CDS | 40.0% | |
| CAATGATTGTTCCGAATCAG+TGG | + | chr5.1:26331210-26331229 | MS.gene45117:CDS | 40.0% | |
| CCTGGGTTATTGAAGGAAAA+AGG | + | chr5.1:26331082-26331101 | MS.gene45117:CDS | 40.0% | |
| CTTGGCTTAAATGGTAGTTG+CGG | - | chr5.1:26331132-26331151 | None:intergenic | 40.0% | |
| GAACATAGCTTCTTCACTGT+AGG | - | chr5.1:26330619-26330638 | None:intergenic | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5.1:26330997-26331016 | MS.gene45117:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5.1:26331318-26331337 | MS.gene45117:CDS | 40.0% | |
| GGTTATTGAAGGAAAAAGGG+TGG | + | chr5.1:26331086-26331105 | MS.gene45117:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5.1:26330258-26330277 | None:intergenic | 40.0% | |
| TAGTAGCGATTCGAAGACAA+TGG | - | chr5.1:26330660-26330679 | None:intergenic | 40.0% | |
| TCTGGTGTAAACAGTCAAAC+AGG | + | chr5.1:26330402-26330421 | MS.gene45117:CDS | 40.0% | |
| TCTGGTGTAAACAGTCAAAC+TGG | + | chr5.1:26330402-26330421 | MS.gene45117:CDS | 40.0% | |
| TTGAAGGAAAGGATGCTGTT+TGG | + | chr5.1:26331419-26331438 | MS.gene45117:CDS | 40.0% | |
| TTGGCTTAAATGGTAGTTGC+GGG | - | chr5.1:26331131-26331150 | None:intergenic | 40.0% | |
| ! | AAGGAAAATAGTGGAGAAGG+TGG | + | chr5.1:26331355-26331374 | MS.gene45117:CDS | 40.0% |
| ! | CCTTTTTCCTTCAATAACCC+AGG | - | chr5.1:26331085-26331104 | None:intergenic | 40.0% |
| ! | CTTTCCAACAACCACTGATT+CGG | - | chr5.1:26331224-26331243 | None:intergenic | 40.0% |
| ! | TGAAGGAAAGGATGCTGTTT+GGG | + | chr5.1:26331420-26331439 | MS.gene45117:CDS | 40.0% |
| ! | TTTTCCTTCAATAACCCAGG+AGG | - | chr5.1:26331082-26331101 | None:intergenic | 40.0% |
| !!! | CTCTTGTTTTGGTTTGTGCA+AGG | + | chr5.1:26330311-26330330 | MS.gene45117:CDS | 40.0% |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5.1:26331452-26331471 | MS.gene45117:CDS | 40.0% |
| AGAAGGTTTGGATGGAATGC+TGG | + | chr5.1:26331544-26331563 | MS.gene45117:CDS | 45.0% | |
| AGGAATTCCATCAGAGGCAA+CGG | - | chr5.1:26331062-26331081 | None:intergenic | 45.0% | |
| GAAGGTTTGGATGGAATGCT+GGG | + | chr5.1:26331545-26331564 | MS.gene45117:CDS | 45.0% | |
| GGGAACAAAGAAGGTTTGGA+TGG | + | chr5.1:26331536-26331555 | MS.gene45117:CDS | 45.0% | |
| TCGGGTGAAAACAGTCAAAC+TGG | + | chr5.1:26330462-26330481 | MS.gene45117:CDS | 45.0% | |
| TCTGGTGTAAACCGTCAAAC+TGG | + | chr5.1:26330492-26330511 | MS.gene45117:CDS | 45.0% | |
| TCTTGTGATATCGGATGAGG+AGG | + | chr5.1:26330278-26330297 | MS.gene45117:CDS | 45.0% | |
| TGGCTTAAATGGTAGTTGCG+GGG | - | chr5.1:26331130-26331149 | None:intergenic | 45.0% | |
| TGTTCCGAATCAGTGGTTGT+TGG | + | chr5.1:26331217-26331236 | MS.gene45117:CDS | 45.0% | |
| TTGAAGGGCTCCAAAGCTAT+TGG | - | chr5.1:26330986-26331005 | None:intergenic | 45.0% | |
| TTTCAGATCCACCACCATCA+GGG | + | chr5.1:26330241-26330260 | MS.gene45117:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5.1:26331550-26331569 | MS.gene45117:CDS | 45.0% | |
| ! | ATTTGGTAGCTTGGAACGCA+AGG | - | chr5.1:26331173-26331192 | None:intergenic | 45.0% |
| !! | AAGAAGGAAGGGGAAGTATC+AGG | + | chr5.1:26330686-26330705 | MS.gene45117:CDS | 45.0% |
| !! | AGAAGGAAGGGGAAGTATCA+GGG | + | chr5.1:26330687-26330706 | MS.gene45117:CDS | 45.0% |
| CCTCTGATGGAATTCCTCCT+GGG | + | chr5.1:26331065-26331084 | MS.gene45117:CDS | 50.0% | |
| CTTGAATTTGGCCCTGATGG+TGG | - | chr5.1:26330255-26330274 | None:intergenic | 50.0% | |
| CTTTCAGATCCACCACCATC+AGG | + | chr5.1:26330240-26330259 | MS.gene45117:CDS | 50.0% | |
| GCAAAATCCGTTGCCTCTGA+TGG | + | chr5.1:26331052-26331071 | MS.gene45117:CDS | 50.0% | |
| GTTTGGATGGAATGCTGGGA+AGG | + | chr5.1:26331549-26331568 | MS.gene45117:CDS | 50.0% | |
| !! | GAAGGAAGGGGAAGTATCAG+GGG | + | chr5.1:26330688-26330707 | MS.gene45117:CDS | 50.0% |
| !! | GGTGGATCTGAAAGAGCACT+AGG | - | chr5.1:26330234-26330253 | None:intergenic | 50.0% |
| CCCAGGAGGAATTCCATCAG+AGG | - | chr5.1:26331068-26331087 | None:intergenic | 55.0% | |
| GCCTCTGATGGAATTCCTCC+TGG | + | chr5.1:26331064-26331083 | MS.gene45117:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5.1:26330252-26330271 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 26330192 | 26331741 | 26330192 | ID=MS.gene45117 |
| chr5.1 | mRNA | 26330192 | 26331741 | 26330192 | ID=MS.gene45117.t1;Parent=MS.gene45117 |
| chr5.1 | exon | 26330192 | 26330709 | 26330192 | ID=MS.gene45117.t1.exon1;Parent=MS.gene45117.t1 |
| chr5.1 | CDS | 26330192 | 26330709 | 26330192 | ID=cds.MS.gene45117.t1;Parent=MS.gene45117.t1 |
| chr5.1 | exon | 26330910 | 26331741 | 26330910 | ID=MS.gene45117.t1.exon2;Parent=MS.gene45117.t1 |
| chr5.1 | CDS | 26330910 | 26331741 | 26330910 | ID=cds.MS.gene45117.t1;Parent=MS.gene45117.t1 |
| Gene Sequence |
| Protein sequence |
