Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45118.t1 | XP_003613366.2 | 92 | 387 | 31 | 0 | 1 | 387 | 46 | 432 | 1.90E-208 | 734.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45118.t1 | G7K479 | 92.0 | 387 | 31 | 0 | 1 | 387 | 1 | 387 | 1.3e-208 | 734.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68297 | MS.gene45118 | PPI |
| MS.gene68295 | MS.gene45118 | PPI |
| MS.gene43935 | MS.gene45118 | PPI |
| MS.gene45117 | MS.gene45118 | PPI |
| MS.gene45114 | MS.gene45118 | PPI |
| MS.gene027544 | MS.gene45118 | PPI |
| MS.gene027534 | MS.gene45118 | PPI |
| MS.gene45119 | MS.gene45118 | PPI |
| MS.gene027537 | MS.gene45118 | PPI |
| MS.gene45116 | MS.gene45118 | PPI |
| MS.gene68298 | MS.gene45118 | PPI |
| MS.gene45118 | MS.gene45119 | PPI |
| MS.gene045965 | MS.gene45118 | PPI |
| MS.gene027539 | MS.gene45118 | PPI |
| MS.gene45120 | MS.gene45118 | PPI |
| MS.gene45118 | MS.gene053932 | PPI |
| MS.gene68293 | MS.gene45118 | PPI |
| MS.gene45118 | MS.gene78745 | PPI |
| MS.gene45118 | MS.gene027536 | PPI |
| MS.gene027535 | MS.gene45118 | PPI |
| MS.gene45118 | MS.gene45120 | PPI |
| MS.gene027538 | MS.gene45118 | PPI |
| MS.gene45115 | MS.gene45118 | PPI |
| MS.gene027540 | MS.gene45118 | PPI |
| MS.gene43936 | MS.gene45118 | PPI |
| MS.gene68296 | MS.gene45118 | PPI |
| MS.gene45118 | MS.gene042700 | PPI |
| MS.gene68292 | MS.gene45118 | PPI |
| MS.gene027543 | MS.gene45118 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45118.t1 | MTR_5g035750 | 91.990 | 387 | 31 | 0 | 1 | 387 | 1 | 387 | 0.0 | 742 |
| MS.gene45118.t1 | MTR_5g035690 | 88.372 | 387 | 44 | 1 | 1 | 387 | 1 | 386 | 0.0 | 707 |
| MS.gene45118.t1 | MTR_5g035665 | 86.822 | 387 | 43 | 1 | 1 | 387 | 1 | 379 | 0.0 | 696 |
| MS.gene45118.t1 | MTR_5g035670 | 81.748 | 389 | 61 | 2 | 1 | 387 | 1 | 381 | 0.0 | 647 |
| MS.gene45118.t1 | MTR_5g035760 | 74.615 | 390 | 86 | 4 | 1 | 387 | 1 | 380 | 0.0 | 577 |
| MS.gene45118.t1 | MTR_6g472110 | 49.752 | 404 | 181 | 9 | 1 | 387 | 1 | 399 | 1.22e-119 | 352 |
| MS.gene45118.t1 | MTR_6g016660 | 41.422 | 408 | 208 | 8 | 1 | 387 | 1 | 398 | 2.30e-97 | 296 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45118.t1 | AT1G13480 | 43.641 | 401 | 198 | 11 | 1 | 387 | 1 | 387 | 1.16e-103 | 311 |
| MS.gene45118.t1 | AT1G13520 | 44.030 | 402 | 195 | 12 | 1 | 387 | 1 | 387 | 1.29e-101 | 306 |
| MS.gene45118.t1 | AT1G13530 | 44.975 | 398 | 195 | 11 | 1 | 387 | 1 | 385 | 1.09e-99 | 301 |
| MS.gene45118.t1 | AT1G13490 | 43.719 | 398 | 197 | 9 | 1 | 387 | 1 | 382 | 1.18e-99 | 301 |
| MS.gene45118.t1 | AT1G13510 | 43.108 | 399 | 196 | 12 | 1 | 387 | 1 | 380 | 1.20e-99 | 301 |
| MS.gene45118.t1 | AT1G13470 | 43.939 | 396 | 195 | 12 | 1 | 387 | 1 | 378 | 2.28e-94 | 287 |
| MS.gene45118.t1 | AT1G13540 | 43.250 | 400 | 195 | 13 | 1 | 387 | 1 | 381 | 1.23e-92 | 283 |
| MS.gene45118.t1 | AT1G13550 | 41.397 | 401 | 202 | 13 | 1 | 384 | 1 | 385 | 4.70e-91 | 279 |
| MS.gene45118.t1 | AT1G13490 | 41.814 | 397 | 187 | 9 | 1 | 387 | 1 | 363 | 2.27e-89 | 274 |
| MS.gene45118.t1 | AT1G61600 | 38.318 | 428 | 216 | 9 | 1 | 387 | 1 | 421 | 4.62e-88 | 273 |
| MS.gene45118.t1 | AT1G13500 | 41.935 | 403 | 201 | 13 | 1 | 387 | 1 | 386 | 7.48e-87 | 268 |
Find 88 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCAGATGGAATTCCTTC+TGG | 0.172161 | 5.1:+26343647 | MS.gene45118:CDS |
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | 5.1:-26343028 | None:intergenic |
| TCAGAACAATCATTGAAAAT+TGG | 0.211604 | 5.1:-26343785 | None:intergenic |
| AAAATTGGAAAGTTGATATT+TGG | 0.225203 | 5.1:-26343770 | None:intergenic |
| CCTTCCTTCACAAACATAAA+TGG | 0.225580 | 5.1:-26343836 | None:intergenic |
| AGCCTAAAGCTTCGCTTAAA+TGG | 0.247185 | 5.1:-26343721 | None:intergenic |
| GCAAATAAGTGGAAGAAATT+TGG | 0.277030 | 5.1:+26344196 | MS.gene45118:CDS |
| GCTCAAACTTACTGCTGTTT+TGG | 0.281432 | 5.1:+26343064 | MS.gene45118:CDS |
| GAGGAGAATGGATACAAAAT+TGG | 0.283501 | 5.1:+26344249 | MS.gene45118:CDS |
| CTTTCAGACCCACCGCCATC+AGG | 0.293327 | 5.1:+26343004 | MS.gene45118:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5.1:+26344075 | MS.gene45118:CDS |
| TTGAAGGGTTCCAAAGCTTT+TGG | 0.304910 | 5.1:-26343566 | None:intergenic |
| GCTTCTTCAGTGTAGGTGTT+TGG | 0.311170 | 5.1:-26343187 | None:intergenic |
| GAAGGAAGGAATGAATTTAA+AGG | 0.316001 | 5.1:+26343850 | MS.gene45118:CDS |
| GATAATGGTTTATTCAATAC+TGG | 0.323134 | 5.1:-26343220 | None:intergenic |
| GGTATAAACAATATTATAAC+TGG | 0.330323 | 5.1:+26343160 | MS.gene45118:CDS |
| CCTCAGATGGAATTCCTTCT+GGG | 0.337132 | 5.1:+26343648 | MS.gene45118:CDS |
| TATACCAGATGTATAATTGA+TGG | 0.339222 | 5.1:-26343143 | None:intergenic |
| TTCGCTTAAATGGTAGTTGC+GGG | 0.362092 | 5.1:-26343711 | None:intergenic |
| TGATGTTAAACCAAAAGCTT+TGG | 0.376817 | 5.1:+26343556 | MS.gene45118:CDS |
| TAGTAGCGATTCGAAGATAA+TGG | 0.381577 | 5.1:-26343235 | None:intergenic |
| AAATGGGAACAAGAAAGATT+TGG | 0.385031 | 5.1:+26344115 | MS.gene45118:CDS |
| AAAGTTGATATTTGGTAGCT+TGG | 0.386482 | 5.1:-26343762 | None:intergenic |
| CACATCAAGTTAGGAGCAAA+TGG | 0.392541 | 5.1:+26344296 | MS.gene45118:CDS |
| GAAAGATTTGGATGGAATGC+TGG | 0.400495 | 5.1:+26344127 | MS.gene45118:CDS |
| AAGTTATTCTTTGAGGAGAA+TGG | 0.403630 | 5.1:+26344237 | MS.gene45118:CDS |
| CCTTTGAACTTGTACTAGCT+TGG | 0.411881 | 5.1:-26343493 | None:intergenic |
| ACAAAAGTTGAGGAGTTTGA+TGG | 0.425344 | 5.1:+26344172 | MS.gene45118:CDS |
| TGAAGGGAAGGATGCTGCTT+GGG | 0.431448 | 5.1:+26344003 | MS.gene45118:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5.1:+26343900 | MS.gene45118:CDS |
| GTAACCATCAATTATACATC+TGG | 0.444032 | 5.1:+26343139 | MS.gene45118:CDS |
| ACAGAAGTTGCTAAGGTTGA+AGG | 0.447457 | 5.1:+26343986 | MS.gene45118:CDS |
| ATAGACACTCACATCAAGTT+AGG | 0.448378 | 5.1:+26344287 | MS.gene45118:CDS |
| TACCATTTAAGCGAAGCTTT+AGG | 0.450719 | 5.1:+26343719 | MS.gene45118:CDS |
| AGAAGGAAGGGGAAGTATCA+AGG | 0.456356 | 5.1:+26343265 | MS.gene45118:CDS |
| TGGTTGAAAGTTATTCTTTG+AGG | 0.464463 | 5.1:+26344230 | MS.gene45118:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5.1:+26344025 | MS.gene45118:CDS |
| GAATTCCTTCTGGGTTATTG+AGG | 0.465815 | 5.1:+26343657 | MS.gene45118:CDS |
| TACTTGTTGATAATCATTGA+AGG | 0.476536 | 5.1:-26343582 | None:intergenic |
| GAATTTGGCCCTGATGGCGG+TGG | 0.476667 | 5.1:-26343013 | None:intergenic |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5.1:+26344064 | MS.gene45118:CDS |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.489041 | 5.1:+26343935 | MS.gene45118:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.1:+26343836 | MS.gene45118:CDS |
| TAGTACAAGTTCAAAGGAAG+AGG | 0.503151 | 5.1:+26343499 | MS.gene45118:CDS |
| TTTGGATGGAATGCTGGGAA+TGG | 0.504148 | 5.1:+26344133 | MS.gene45118:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.507064 | 5.1:+26343248 | MS.gene45118:CDS |
| GCAAAATCAGTTGCCTCAGA+TGG | 0.507539 | 5.1:+26343635 | MS.gene45118:CDS |
| TCTGGGTTATTGAGGAAAAG+AGG | 0.508032 | 5.1:+26343665 | MS.gene45118:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.509676 | 5.1:-26343019 | None:intergenic |
| AAAGATTTGGATGGAATGCT+GGG | 0.513249 | 5.1:+26344128 | MS.gene45118:CDS |
| CCAAGCTAGTACAAGTTCAA+AGG | 0.520879 | 5.1:+26343493 | MS.gene45118:CDS |
| TGCTTGGGATGAAAATAGAT+TGG | 0.520934 | 5.1:+26344018 | MS.gene45118:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.522008 | 5.1:+26343252 | MS.gene45118:CDS |
| TGTTCTGAATCAGTGGTTGT+TGG | 0.524665 | 5.1:+26343800 | MS.gene45118:CDS |
| TACTATGTTATAAGAAGGAA+GGG | 0.531189 | 5.1:+26343253 | MS.gene45118:CDS |
| TTGAAGGGAAGGATGCTGCT+TGG | 0.532548 | 5.1:+26344002 | MS.gene45118:CDS |
| AAGTTGTTGAGGCAATGAAA+TGG | 0.534687 | 5.1:+26344098 | MS.gene45118:CDS |
| ATTTGGTAGCTTGGAACGCA+AGG | 0.538684 | 5.1:-26343753 | None:intergenic |
| TATTCAAACAGAAGTTGCTA+AGG | 0.547553 | 5.1:+26343979 | MS.gene45118:CDS |
| CAGAAGTTGCTAAGGTTGAA+GGG | 0.548831 | 5.1:+26343987 | MS.gene45118:CDS |
| CAATGATTGTTCTGAATCAG+TGG | 0.548989 | 5.1:+26343793 | MS.gene45118:CDS |
| AGTTTGATGGAGCAAATAAG+TGG | 0.549427 | 5.1:+26344185 | MS.gene45118:CDS |
| ACTTGTTGATAATCATTGAA+GGG | 0.552020 | 5.1:-26343581 | None:intergenic |
| TTTCAGACCCACCGCCATCA+GGG | 0.554396 | 5.1:+26343005 | MS.gene45118:CDS |
| GAAGGAAGGGGAAGTATCAA+GGG | 0.558683 | 5.1:+26343266 | MS.gene45118:CDS |
| ACATCAAGTTAGGAGCAAAT+GGG | 0.561699 | 5.1:+26344297 | MS.gene45118:CDS |
| AATTTGGCCCTGATGGCGGT+GGG | 0.564723 | 5.1:-26343012 | None:intergenic |
| CTGGGTTATTGAGGAAAAGA+GGG | 0.567801 | 5.1:+26343666 | MS.gene45118:CDS |
| AGTTGTTGAGGCAATGAAAT+GGG | 0.574296 | 5.1:+26344099 | MS.gene45118:CDS |
| CTTCGCTTAAATGGTAGTTG+CGG | 0.574527 | 5.1:-26343712 | None:intergenic |
| GGGAACAAGAAAGATTTGGA+TGG | 0.577539 | 5.1:+26344119 | MS.gene45118:CDS |
| GAAATTTGGTAGTTATGTGT+TGG | 0.582462 | 5.1:+26344210 | MS.gene45118:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.1:+26343832 | MS.gene45118:CDS |
| AGTTGCTAAGGTTGAAGGGA+AGG | 0.586429 | 5.1:+26343991 | MS.gene45118:CDS |
| AGTGAGAGTAACAAAAGTTG+AGG | 0.593305 | 5.1:+26344162 | MS.gene45118:CDS |
| AAGGAAAATAGTGGAGAAGG+TGG | 0.602522 | 5.1:+26343938 | MS.gene45118:CDS |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5.1:+26343901 | MS.gene45118:CDS |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.614856 | 5.1:+26344087 | MS.gene45118:CDS |
| GAACATAGCTTCTTCAGTGT+AGG | 0.619148 | 5.1:-26343194 | None:intergenic |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.623216 | 5.1:+26343807 | MS.gene45118:CDS |
| GGTGGGTCTGAAAGAGCACT+AGG | 0.628671 | 5.1:-26342995 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+CGG | 0.637791 | 5.1:-26343016 | None:intergenic |
| CCCAGAAGGAATTCCATCTG+AGG | 0.646225 | 5.1:-26343648 | None:intergenic |
| TCGCTTAAATGGTAGTTGCG+GGG | 0.646915 | 5.1:-26343710 | None:intergenic |
| AAAACTACAACATAAACATG+TGG | 0.651413 | 5.1:-26343528 | None:intergenic |
| GGTTATTGAGGAAAAGAGGG+TGG | 0.667530 | 5.1:+26343669 | MS.gene45118:CDS |
| ACTATGTTATAAGAAGGAAG+GGG | 0.684429 | 5.1:+26343254 | MS.gene45118:CDS |
| TTATCTTGTGATATTAGACG+AGG | 0.694247 | 5.1:+26343039 | MS.gene45118:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATAATTATATTTTTGT+TGG | + | chr5.1:26343375-26343394 | MS.gene45118:intron | 10.0% |
| !! | ACAAGTAGAAATAATAAAAA+TGG | + | chr5.1:26343598-26343617 | MS.gene45118:CDS | 15.0% |
| !! | CAAGTAGAAATAATAAAAAT+GGG | + | chr5.1:26343599-26343618 | MS.gene45118:CDS | 15.0% |
| !! | ATAGATTCATAAAGTAATAG+TGG | + | chr5.1:26343431-26343450 | MS.gene45118:intron | 20.0% |
| !! | ATATTACAATACTCACAATT+GGG | - | chr5.1:26343354-26343373 | None:intergenic | 20.0% |
| !! | GGTATAAACAATATTATAAC+TGG | + | chr5.1:26343160-26343179 | MS.gene45118:CDS | 20.0% |
| !!! | AAAATTGGAAAGTTGATATT+TGG | - | chr5.1:26343773-26343792 | None:intergenic | 20.0% |
| !!! | ATTTTTTCAAAGGAAAATAG+TGG | + | chr5.1:26343929-26343948 | MS.gene45118:CDS | 20.0% |
| ! | AAAACTACAACATAAACATG+TGG | - | chr5.1:26343531-26343550 | None:intergenic | 25.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5.1:26343031-26343050 | None:intergenic | 25.0% |
| ! | CATATTACAATACTCACAAT+TGG | - | chr5.1:26343355-26343374 | None:intergenic | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5.1:26343253-26343272 | MS.gene45118:CDS | 25.0% |
| ! | TATACCAGATGTATAATTGA+TGG | - | chr5.1:26343146-26343165 | None:intergenic | 25.0% |
| ! | TCAGAACAATCATTGAAAAT+TGG | - | chr5.1:26343788-26343807 | None:intergenic | 25.0% |
| !! | GATAATGGTTTATTCAATAC+TGG | - | chr5.1:26343223-26343242 | None:intergenic | 25.0% |
| !!! | ACTTGTTGATAATCATTGAA+GGG | - | chr5.1:26343584-26343603 | None:intergenic | 25.0% |
| !!! | TACTTGTTGATAATCATTGA+AGG | - | chr5.1:26343585-26343604 | None:intergenic | 25.0% |
| !!! | TTGTTGGTAATTATCTTTCA+TGG | + | chr5.1:26343391-26343410 | MS.gene45118:intron | 25.0% |
| AAATGGGAACAAGAAAGATT+TGG | + | chr5.1:26344115-26344134 | MS.gene45118:CDS | 30.0% | |
| ACTATGTTATAAGAAGGAAG+GGG | + | chr5.1:26343254-26343273 | MS.gene45118:CDS | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5.1:26343248-26343267 | MS.gene45118:CDS | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5.1:26343252-26343271 | MS.gene45118:CDS | 30.0% | |
| GAAGGAAGGAATGAATTTAA+AGG | + | chr5.1:26343850-26343869 | MS.gene45118:CDS | 30.0% | |
| GCAAATAAGTGGAAGAAATT+TGG | + | chr5.1:26344196-26344215 | MS.gene45118:CDS | 30.0% | |
| GTAACCATCAATTATACATC+TGG | + | chr5.1:26343139-26343158 | MS.gene45118:CDS | 30.0% | |
| TATTCAAACAGAAGTTGCTA+AGG | + | chr5.1:26343979-26343998 | MS.gene45118:CDS | 30.0% | |
| TGATGTTAAACCAAAAGCTT+TGG | + | chr5.1:26343556-26343575 | MS.gene45118:CDS | 30.0% | |
| TGGTTGAAAGTTATTCTTTG+AGG | + | chr5.1:26344230-26344249 | MS.gene45118:CDS | 30.0% | |
| TTATCTTGTGATATTAGACG+AGG | + | chr5.1:26343039-26343058 | MS.gene45118:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.1:26343832-26343851 | MS.gene45118:CDS | 30.0% | |
| ! | AAGTTATTCTTTGAGGAGAA+TGG | + | chr5.1:26344237-26344256 | MS.gene45118:CDS | 30.0% |
| ! | ACTAGGATTCATTTTGTACA+TGG | - | chr5.1:26342981-26343000 | None:intergenic | 30.0% |
| ! | ATGGTTACATTTTTGTTCTG+AGG | - | chr5.1:26343127-26343146 | None:intergenic | 30.0% |
| ! | GAAATTTGGTAGTTATGTGT+TGG | + | chr5.1:26344210-26344229 | MS.gene45118:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.1:26344025-26344044 | MS.gene45118:CDS | 30.0% |
| ! | TGGTTACATTTTTGTTCTGA+GGG | - | chr5.1:26343126-26343145 | None:intergenic | 30.0% |
| !! | AAAGTTGATATTTGGTAGCT+TGG | - | chr5.1:26343765-26343784 | None:intergenic | 30.0% |
| !!! | AAGCTTTTGGTTTAACATCA+TGG | - | chr5.1:26343556-26343575 | None:intergenic | 30.0% |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5.1:26343919-26343938 | MS.gene45118:CDS | 30.0% |
| AAAGATTTGGATGGAATGCT+GGG | + | chr5.1:26344128-26344147 | MS.gene45118:CDS | 35.0% | |
| AAGTTGTTGAGGCAATGAAA+TGG | + | chr5.1:26344098-26344117 | MS.gene45118:CDS | 35.0% | |
| ACAAAAGTTGAGGAGTTTGA+TGG | + | chr5.1:26344172-26344191 | MS.gene45118:CDS | 35.0% | |
| ACATCAAGTTAGGAGCAAAT+GGG | + | chr5.1:26344297-26344316 | MS.gene45118:CDS | 35.0% | |
| AGTGAGAGTAACAAAAGTTG+AGG | + | chr5.1:26344162-26344181 | MS.gene45118:CDS | 35.0% | |
| AGTTGTTGAGGCAATGAAAT+GGG | + | chr5.1:26344099-26344118 | MS.gene45118:CDS | 35.0% | |
| AGTTTGATGGAGCAAATAAG+TGG | + | chr5.1:26344185-26344204 | MS.gene45118:CDS | 35.0% | |
| ATAGACACTCACATCAAGTT+AGG | + | chr5.1:26344287-26344306 | MS.gene45118:CDS | 35.0% | |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5.1:26344087-26344106 | MS.gene45118:CDS | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.1:26343836-26343855 | MS.gene45118:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.1:26343839-26343858 | None:intergenic | 35.0% | |
| GAGGAGAATGGATACAAAAT+TGG | + | chr5.1:26344249-26344268 | MS.gene45118:CDS | 35.0% | |
| TACCATTTAAGCGAAGCTTT+AGG | + | chr5.1:26343719-26343738 | MS.gene45118:CDS | 35.0% | |
| TAGTACAAGTTCAAAGGAAG+AGG | + | chr5.1:26343499-26343518 | MS.gene45118:CDS | 35.0% | |
| TAGTAGCGATTCGAAGATAA+TGG | - | chr5.1:26343238-26343257 | None:intergenic | 35.0% | |
| TGCTTGGGATGAAAATAGAT+TGG | + | chr5.1:26344018-26344037 | MS.gene45118:CDS | 35.0% | |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5.1:26344064-26344083 | MS.gene45118:CDS | 35.0% |
| ! | CAATGATTGTTCTGAATCAG+TGG | + | chr5.1:26343793-26343812 | MS.gene45118:CDS | 35.0% |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5.1:26343935-26343954 | MS.gene45118:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.1:26344075-26344094 | MS.gene45118:CDS | 35.0% |
| !!! | ACATTTTTGTTCTGAGGGAT+AGG | - | chr5.1:26343121-26343140 | None:intergenic | 35.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.1:26343807-26343826 | MS.gene45118:CDS | 40.0% | |
| ACAGAAGTTGCTAAGGTTGA+AGG | + | chr5.1:26343986-26344005 | MS.gene45118:CDS | 40.0% | |
| AGCCTAAAGCTTCGCTTAAA+TGG | - | chr5.1:26343724-26343743 | None:intergenic | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5.1:26343900-26343919 | MS.gene45118:CDS | 40.0% | |
| ATACTCACAATTGGGATGAC+AGG | - | chr5.1:26343346-26343365 | None:intergenic | 40.0% | |
| CACATCAAGTTAGGAGCAAA+TGG | + | chr5.1:26344296-26344315 | MS.gene45118:CDS | 40.0% | |
| CAGAAGTTGCTAAGGTTGAA+GGG | + | chr5.1:26343987-26344006 | MS.gene45118:CDS | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | + | chr5.1:26343493-26343512 | MS.gene45118:CDS | 40.0% | |
| CCTTTGAACTTGTACTAGCT+TGG | - | chr5.1:26343496-26343515 | None:intergenic | 40.0% | |
| CTGGGTTATTGAGGAAAAGA+GGG | + | chr5.1:26343666-26343685 | MS.gene45118:CDS | 40.0% | |
| CTTCGCTTAAATGGTAGTTG+CGG | - | chr5.1:26343715-26343734 | None:intergenic | 40.0% | |
| GAAAGATTTGGATGGAATGC+TGG | + | chr5.1:26344127-26344146 | MS.gene45118:CDS | 40.0% | |
| GAACATAGCTTCTTCAGTGT+AGG | - | chr5.1:26343197-26343216 | None:intergenic | 40.0% | |
| GAATTCCTTCTGGGTTATTG+AGG | + | chr5.1:26343657-26343676 | MS.gene45118:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5.1:26343901-26343920 | MS.gene45118:CDS | 40.0% | |
| GGGAACAAGAAAGATTTGGA+TGG | + | chr5.1:26344119-26344138 | MS.gene45118:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5.1:26343022-26343041 | None:intergenic | 40.0% | |
| TACTCACAATTGGGATGACA+GGG | - | chr5.1:26343345-26343364 | None:intergenic | 40.0% | |
| TCTGGGTTATTGAGGAAAAG+AGG | + | chr5.1:26343665-26343684 | MS.gene45118:CDS | 40.0% | |
| TTCGCTTAAATGGTAGTTGC+GGG | - | chr5.1:26343714-26343733 | None:intergenic | 40.0% | |
| ! | AAGGAAAATAGTGGAGAAGG+TGG | + | chr5.1:26343938-26343957 | MS.gene45118:CDS | 40.0% |
| ! | CTTTTCCTCAATAACCCAGA+AGG | - | chr5.1:26343665-26343684 | None:intergenic | 40.0% |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | + | chr5.1:26343800-26343819 | MS.gene45118:CDS | 40.0% |
| ! | TTGAAGGGTTCCAAAGCTTT+TGG | - | chr5.1:26343569-26343588 | None:intergenic | 40.0% |
| !! | GCTCAAACTTACTGCTGTTT+TGG | + | chr5.1:26343064-26343083 | MS.gene45118:CDS | 40.0% |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5.1:26344035-26344054 | MS.gene45118:CDS | 40.0% |
| AGTTGCTAAGGTTGAAGGGA+AGG | + | chr5.1:26343991-26344010 | MS.gene45118:CDS | 45.0% | |
| CCTCAGATGGAATTCCTTCT+GGG | + | chr5.1:26343648-26343667 | MS.gene45118:CDS | 45.0% | |
| GCAAAATCAGTTGCCTCAGA+TGG | + | chr5.1:26343635-26343654 | MS.gene45118:CDS | 45.0% | |
| GCTTCTTCAGTGTAGGTGTT+TGG | - | chr5.1:26343190-26343209 | None:intergenic | 45.0% | |
| GGTTATTGAGGAAAAGAGGG+TGG | + | chr5.1:26343669-26343688 | MS.gene45118:CDS | 45.0% | |
| TCGCTTAAATGGTAGTTGCG+GGG | - | chr5.1:26343713-26343732 | None:intergenic | 45.0% | |
| TTTGGATGGAATGCTGGGAA+TGG | + | chr5.1:26344133-26344152 | MS.gene45118:CDS | 45.0% | |
| ! | ATTTGGTAGCTTGGAACGCA+AGG | - | chr5.1:26343756-26343775 | None:intergenic | 45.0% |
| !! | AGAAGGAAGGGGAAGTATCA+AGG | + | chr5.1:26343265-26343284 | MS.gene45118:CDS | 45.0% |
| !! | GAAGGAAGGGGAAGTATCAA+GGG | + | chr5.1:26343266-26343285 | MS.gene45118:CDS | 45.0% |
| !!! | CTGCTGTTTTGGTTTGTGCA+AGG | + | chr5.1:26343075-26343094 | MS.gene45118:CDS | 45.0% |
| CCCAGAAGGAATTCCATCTG+AGG | - | chr5.1:26343651-26343670 | None:intergenic | 50.0% | |
| CTTGAATTTGGCCCTGATGG+CGG | - | chr5.1:26343019-26343038 | None:intergenic | 50.0% | |
| GCCTCAGATGGAATTCCTTC+TGG | + | chr5.1:26343647-26343666 | MS.gene45118:CDS | 50.0% | |
| TTGAAGGGAAGGATGCTGCT+TGG | + | chr5.1:26344002-26344021 | MS.gene45118:CDS | 50.0% | |
| ! | TGAAGGGAAGGATGCTGCTT+GGG | + | chr5.1:26344003-26344022 | MS.gene45118:CDS | 50.0% |
| TTTCAGACCCACCGCCATCA+GGG | + | chr5.1:26343005-26343024 | MS.gene45118:CDS | 55.0% | |
| !! | AATTTGGCCCTGATGGCGGT+GGG | - | chr5.1:26343015-26343034 | None:intergenic | 55.0% |
| !! | GGTGGGTCTGAAAGAGCACT+AGG | - | chr5.1:26342998-26343017 | None:intergenic | 55.0% |
| CTTTCAGACCCACCGCCATC+AGG | + | chr5.1:26343004-26343023 | MS.gene45118:CDS | 60.0% | |
| !! | GAATTTGGCCCTGATGGCGG+TGG | - | chr5.1:26343016-26343035 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 26342956 | 26344324 | 26342956 | ID=MS.gene45118 |
| chr5.1 | mRNA | 26342956 | 26344324 | 26342956 | ID=MS.gene45118.t1;Parent=MS.gene45118 |
| chr5.1 | exon | 26342956 | 26343287 | 26342956 | ID=MS.gene45118.t1.exon1;Parent=MS.gene45118.t1 |
| chr5.1 | CDS | 26342956 | 26343287 | 26342956 | ID=cds.MS.gene45118.t1;Parent=MS.gene45118.t1 |
| chr5.1 | exon | 26343493 | 26344324 | 26343493 | ID=MS.gene45118.t1.exon2;Parent=MS.gene45118.t1 |
| chr5.1 | CDS | 26343493 | 26344324 | 26343493 | ID=cds.MS.gene45118.t1;Parent=MS.gene45118.t1 |
| Gene Sequence |
| Protein sequence |
