Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027544.t1 | XP_013453735.1 | 92.4 | 381 | 27 | 1 | 1 | 381 | 1 | 379 | 2.50E-205 | 724.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027544.t1 | A0A072UEA2 | 92.4 | 381 | 27 | 1 | 1 | 381 | 1 | 379 | 1.8e-205 | 724.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027544 | MS.gene68296 | PPI |
| MS.gene027544 | MS.gene45120 | PPI |
| MS.gene68296 | MS.gene027544 | PPI |
| MS.gene027544 | MS.gene45115 | PPI |
| MS.gene68293 | MS.gene027544 | PPI |
| MS.gene027544 | MS.gene45118 | PPI |
| MS.gene027544 | MS.gene027540 | PPI |
| MS.gene027544 | MS.gene68293 | PPI |
| MS.gene027544 | MS.gene68297 | PPI |
| MS.gene027544 | MS.gene68295 | PPI |
| MS.gene027544 | MS.gene78745 | PPI |
| MS.gene027544 | MS.gene027538 | PPI |
| MS.gene68297 | MS.gene027544 | PPI |
| MS.gene027544 | MS.gene027536 | PPI |
| MS.gene027544 | MS.gene027539 | PPI |
| MS.gene027544 | MS.gene45116 | PPI |
| MS.gene027544 | MS.gene027537 | PPI |
| MS.gene027544 | MS.gene027534 | PPI |
| MS.gene027544 | MS.gene042700 | PPI |
| MS.gene027544 | MS.gene45114 | PPI |
| MS.gene027544 | MS.gene68298 | PPI |
| MS.gene027544 | MS.gene027535 | PPI |
| MS.gene027544 | MS.gene45117 | PPI |
| MS.gene027544 | MS.gene43936 | PPI |
| MS.gene027544 | MS.gene45119 | PPI |
| MS.gene027544 | MS.gene68292 | PPI |
| MS.gene027544 | MS.gene43935 | PPI |
| MS.gene027544 | MS.gene027543 | PPI |
| MS.gene027544 | MS.gene053932 | PPI |
| MS.gene027544 | MS.gene045965 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027544.t1 | MTR_5g035665 | 92.388 | 381 | 27 | 1 | 1 | 381 | 1 | 379 | 0.0 | 732 |
| MS.gene027544.t1 | MTR_5g035690 | 87.629 | 388 | 39 | 2 | 1 | 381 | 1 | 386 | 0.0 | 699 |
| MS.gene027544.t1 | MTR_5g035670 | 85.827 | 381 | 54 | 0 | 1 | 381 | 1 | 381 | 0.0 | 672 |
| MS.gene027544.t1 | MTR_5g035750 | 83.548 | 389 | 54 | 2 | 1 | 381 | 1 | 387 | 0.0 | 668 |
| MS.gene027544.t1 | MTR_5g035760 | 77.165 | 381 | 86 | 1 | 1 | 381 | 1 | 380 | 0.0 | 604 |
| MS.gene027544.t1 | MTR_6g472110 | 50.500 | 400 | 178 | 8 | 1 | 381 | 1 | 399 | 9.73e-127 | 370 |
| MS.gene027544.t1 | MTR_6g016660 | 43.860 | 399 | 205 | 8 | 1 | 381 | 1 | 398 | 1.61e-102 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027544.t1 | AT1G13480 | 44.810 | 395 | 196 | 9 | 1 | 381 | 1 | 387 | 2.09e-106 | 318 |
| MS.gene027544.t1 | AT1G13490 | 46.292 | 391 | 191 | 9 | 1 | 381 | 1 | 382 | 1.88e-105 | 315 |
| MS.gene027544.t1 | AT1G13510 | 44.784 | 393 | 192 | 12 | 1 | 381 | 1 | 380 | 1.05e-104 | 313 |
| MS.gene027544.t1 | AT1G13530 | 46.970 | 396 | 184 | 12 | 1 | 381 | 1 | 385 | 1.35e-104 | 313 |
| MS.gene027544.t1 | AT1G13520 | 45.088 | 397 | 192 | 12 | 1 | 381 | 1 | 387 | 6.14e-103 | 309 |
| MS.gene027544.t1 | AT1G13540 | 44.670 | 394 | 192 | 12 | 1 | 381 | 1 | 381 | 1.37e-100 | 303 |
| MS.gene027544.t1 | AT1G13470 | 45.663 | 392 | 188 | 11 | 1 | 381 | 1 | 378 | 2.88e-98 | 297 |
| MS.gene027544.t1 | AT1G13490 | 44.103 | 390 | 182 | 9 | 1 | 381 | 1 | 363 | 2.65e-95 | 289 |
| MS.gene027544.t1 | AT1G13550 | 43.434 | 396 | 195 | 13 | 1 | 378 | 1 | 385 | 7.20e-93 | 283 |
| MS.gene027544.t1 | AT1G13500 | 44.304 | 395 | 197 | 12 | 1 | 381 | 1 | 386 | 8.41e-93 | 283 |
| MS.gene027544.t1 | AT1G61600 | 38.771 | 423 | 215 | 9 | 1 | 381 | 1 | 421 | 1.37e-90 | 279 |
Find 88 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | 5.3:-24321331 | None:intergenic |
| AACCTAACGCTTGGCTTAAT+TGG | 0.212270 | 5.3:-24322633 | None:intergenic |
| TTCAAGTTATCTTGTGATAT+TGG | 0.212889 | 5.3:+24321336 | MS.gene027544:CDS |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5.3:-24322748 | None:intergenic |
| AAAATTGAAAAGTTGAAATT+TGG | 0.220039 | 5.3:-24322682 | None:intergenic |
| GTAACAAATGTTGAAGAATT+TGG | 0.231968 | 5.3:+24323087 | MS.gene027544:CDS |
| CCTGGGTTATTGAGGGAAAA+AGG | 0.234439 | 5.3:+24322577 | MS.gene027544:CDS |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5.3:+24322762 | MS.gene027544:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5.3:+24322993 | MS.gene027544:CDS |
| GACAATGGTTGATTTAATAC+TGG | 0.344310 | 5.3:-24321499 | None:intergenic |
| GAGAAGAATGGATAAAAGTT+TGG | 0.346178 | 5.3:+24323167 | MS.gene027544:CDS |
| TTGGCTTAATTGGTAGTTGC+GGG | 0.349143 | 5.3:-24322623 | None:intergenic |
| TGAAGGAAAGGATGCTGTTT+GGG | 0.370832 | 5.3:+24322921 | MS.gene027544:CDS |
| TCAAAGGAAAATGAAAATAG+TGG | 0.372912 | 5.3:+24322847 | MS.gene027544:CDS |
| AAATGGGAACAAGAAAGATT+TGG | 0.385031 | 5.3:+24323033 | MS.gene027544:CDS |
| TTGAAGGAAAGGATGCTGTT+TGG | 0.397380 | 5.3:+24322920 | MS.gene027544:CDS |
| GAAAGATTTGGATGGAATGC+TGG | 0.400495 | 5.3:+24323045 | MS.gene027544:CDS |
| GCTCAAACTTACTCTTGCTT+TGG | 0.406381 | 5.3:+24321367 | MS.gene027544:CDS |
| TGATGTTAAACCAAGACCTT+TGG | 0.408050 | 5.3:+24322468 | MS.gene027544:CDS |
| CCTTTGAACTTGTACTAGCT+TGG | 0.411881 | 5.3:-24322405 | None:intergenic |
| TTGAAGGGCTCCAAAGGTCT+TGG | 0.418581 | 5.3:-24322478 | None:intergenic |
| AAGTTATTCATTGAGAAGAA+TGG | 0.420622 | 5.3:+24323155 | MS.gene027544:CDS |
| GCCCTTCAATGATTATCAAC+AGG | 0.423563 | 5.3:+24322492 | MS.gene027544:CDS |
| AGCATCCTTTCCTTCAACCT+TGG | 0.423840 | 5.3:-24322914 | None:intergenic |
| GCTTCAGATGGAATTCCTCC+TGG | 0.427749 | 5.3:+24322559 | MS.gene027544:CDS |
| AAGTTATTGAAGGAATGAAA+TGG | 0.430511 | 5.3:+24323016 | MS.gene027544:CDS |
| GGTGGGTCTGAAAGAGCATT+AGG | 0.433017 | 5.3:-24321298 | None:intergenic |
| TGAACATAGCTTCTTCACTT+AGG | 0.441565 | 5.3:-24321474 | None:intergenic |
| ACAGAAGTTGCCAAGGTTGA+AGG | 0.444547 | 5.3:+24322904 | MS.gene027544:CDS |
| AGTTATTGAAGGAATGAAAT+GGG | 0.445708 | 5.3:+24323017 | MS.gene027544:CDS |
| GAACATAGCTTCTTCACTTA+GGG | 0.448913 | 5.3:-24321473 | None:intergenic |
| AGAAGGAAGGGAAAGAATCA+AGG | 0.451579 | 5.3:+24321544 | MS.gene027544:CDS |
| GAATTTGGCCCTGATGGTGG+TGG | 0.453647 | 5.3:-24321316 | None:intergenic |
| CTTTCAGACCCACCACCATC+AGG | 0.453725 | 5.3:+24321307 | MS.gene027544:CDS |
| GATGAAAATAGATTGCTTGA+TGG | 0.454252 | 5.3:+24322943 | MS.gene027544:CDS |
| TTAACCATCATTATTTCAGC+AGG | 0.457714 | 5.3:+24321442 | MS.gene027544:CDS |
| GAATTCCTCCTGGGTTATTG+AGG | 0.466329 | 5.3:+24322569 | MS.gene027544:CDS |
| TTGAGTTTGGAAGTTATTGA+AGG | 0.477504 | 5.3:+24323006 | MS.gene027544:CDS |
| GATTGCTTGATGGAGTGTTA+TGG | 0.478512 | 5.3:+24322953 | MS.gene027544:CDS |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5.3:+24322982 | MS.gene027544:CDS |
| AACCTGTTGATAATCATTGA+AGG | 0.481565 | 5.3:-24322494 | None:intergenic |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.3:+24322748 | MS.gene027544:CDS |
| TAGTACAAGTTCAAAGGAAG+AGG | 0.503151 | 5.3:+24322411 | MS.gene027544:CDS |
| AATTCCTCCTGGGTTATTGA+GGG | 0.509022 | 5.3:+24322570 | MS.gene027544:CDS |
| ATTTGGATGGAATGCTGGGA+AGG | 0.512527 | 5.3:+24323050 | MS.gene027544:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.512950 | 5.3:+24321531 | MS.gene027544:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.514101 | 5.3:-24321315 | None:intergenic |
| AATTTGGTGGAACAAACATA+TGG | 0.517000 | 5.3:+24323103 | MS.gene027544:CDS |
| CCAAGCTAGTACAAGTTCAA+AGG | 0.520879 | 5.3:+24322405 | MS.gene027544:CDS |
| TGTTCTGAATCAGTGGTTGT+TGG | 0.524665 | 5.3:+24322712 | MS.gene027544:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.530706 | 5.3:+24323051 | MS.gene027544:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.530832 | 5.3:+24321527 | MS.gene027544:CDS |
| AAAGATTTGGATGGAATGCT+GGG | 0.532701 | 5.3:+24323046 | MS.gene027544:CDS |
| GAAAATGAAAATAGTGGAGA+AGG | 0.537296 | 5.3:+24322853 | MS.gene027544:CDS |
| GAAATTTAGTTGTTATGTGT+TGG | 0.537435 | 5.3:+24323128 | MS.gene027544:CDS |
| CACATCAAATTAAGAGCAAG+TGG | 0.537917 | 5.3:+24323214 | MS.gene027544:CDS |
| GAAATAATCAAGAAGAGTCA+TGG | 0.542478 | 5.3:+24322517 | MS.gene027544:CDS |
| TACCAATTAAGCCAAGCGTT+AGG | 0.542546 | 5.3:+24322631 | MS.gene027544:CDS |
| CATAGCTTCTTCACTTAGGG+TGG | 0.542657 | 5.3:-24321470 | None:intergenic |
| ATTTGGTAGCTTCGAACGCA+AGG | 0.544069 | 5.3:-24322665 | None:intergenic |
| TTCACCTGCTGAAATAATGA+TGG | 0.546574 | 5.3:-24321446 | None:intergenic |
| CTTGGCTTAATTGGTAGTTG+CGG | 0.547379 | 5.3:-24322624 | None:intergenic |
| ACAAATGTTGAAGAATTTGG+TGG | 0.548037 | 5.3:+24323090 | MS.gene027544:CDS |
| AGCTAACACTTGAGCAACGA+TGG | 0.552335 | 5.3:+24322812 | MS.gene027544:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | 5.3:-24321322 | None:intergenic |
| GAAGGAAGGGAAAGAATCAA+GGG | 0.557983 | 5.3:+24321545 | MS.gene027544:CDS |
| ACCTGTTGATAATCATTGAA+GGG | 0.560629 | 5.3:-24322493 | None:intergenic |
| TACTATGTTATAAGAAGGAA+GGG | 0.561528 | 5.3:+24321532 | MS.gene027544:CDS |
| CTTCAGATGGAATTCCTCCT+GGG | 0.571560 | 5.3:+24322560 | MS.gene027544:CDS |
| AATCATTTGAACCTAACGCT+TGG | 0.573053 | 5.3:-24322642 | None:intergenic |
| GCAAAATCTATCGCTTCAGA+TGG | 0.576413 | 5.3:+24322547 | MS.gene027544:CDS |
| GGGAACAAGAAAGATTTGGA+TGG | 0.577539 | 5.3:+24323037 | MS.gene027544:CDS |
| AGTTGCCAAGGTTGAAGGAA+AGG | 0.583011 | 5.3:+24322909 | MS.gene027544:CDS |
| TAATGATTGTTCTGAATCAG+TGG | 0.585316 | 5.3:+24322705 | MS.gene027544:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.3:+24322744 | MS.gene027544:CDS |
| AATGAAAATAGTGGAGAAGG+TGG | 0.590819 | 5.3:+24322856 | MS.gene027544:CDS |
| GTGCAAGAACAATAGAGTCA+AGG | 0.591442 | 5.3:+24321393 | MS.gene027544:CDS |
| TAATCATTGAAGGGCTCCAA+AGG | 0.594177 | 5.3:-24322484 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | 5.3:-24321319 | None:intergenic |
| AAGGTCTTGGTTTAACATCA+CGG | 0.612277 | 5.3:-24322465 | None:intergenic |
| GATTCAAACAGAAGTTGCCA+AGG | 0.618472 | 5.3:+24322897 | MS.gene027544:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.623216 | 5.3:+24322719 | MS.gene027544:CDS |
| TGGCTTAATTGGTAGTTGCG+GGG | 0.631094 | 5.3:-24322622 | None:intergenic |
| TTTCAGACCCACCACCATCA+GGG | 0.636827 | 5.3:+24321308 | MS.gene027544:CDS |
| AAAACTACAACATAAACATG+TGG | 0.651413 | 5.3:-24322440 | None:intergenic |
| GCTAACACTTGAGCAACGAT+GGG | 0.652461 | 5.3:+24322813 | MS.gene027544:CDS |
| ACATCAAATTAAGAGCAAGT+GGG | 0.665734 | 5.3:+24323215 | MS.gene027544:CDS |
| TAGTAGCGATTAGAAGACAA+TGG | 0.682657 | 5.3:-24321514 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAATAAGTAATAG+TGG | + | chr5.3:24322343-24322362 | MS.gene027544:intron | 10.0% |
| !! | TTTAAACAAAATCAATTATA+AGG | + | chr5.3:24321926-24321945 | MS.gene027544:intron | 10.0% |
| !! | AAAATTGAAAAGTTGAAATT+TGG | - | chr5.3:24322685-24322704 | None:intergenic | 15.0% |
| !! | TCTTTCATTGTTAAAAATTA+AGG | - | chr5.3:24321733-24321752 | None:intergenic | 15.0% |
| !! | TTAAACATTAAAAACAATCA+TGG | - | chr5.3:24321911-24321930 | None:intergenic | 15.0% |
| !! | ACAAAATCAATTATAAGGTT+TGG | + | chr5.3:24321931-24321950 | MS.gene027544:intron | 20.0% |
| !! | TCATTGTTAAAAATTAAGGA+GGG | - | chr5.3:24321729-24321748 | None:intergenic | 20.0% |
| !! | TGAAATAGATGCTTAAATTT+AGG | - | chr5.3:24322107-24322126 | None:intergenic | 20.0% |
| !! | TTCATTGTTAAAAATTAAGG+AGG | - | chr5.3:24321730-24321749 | None:intergenic | 20.0% |
| !!! | TATAGTTTTTGTCAAAATTG+TGG | + | chr5.3:24322258-24322277 | MS.gene027544:intron | 20.0% |
| !!! | TTTTCCCGAAAATTAAATTT+GGG | + | chr5.3:24321767-24321786 | MS.gene027544:intron | 20.0% |
| !!! | TTTTTCCCGAAAATTAAATT+TGG | + | chr5.3:24321766-24321785 | MS.gene027544:intron | 20.0% |
| ! | AAAACTACAACATAAACATG+TGG | - | chr5.3:24322443-24322462 | None:intergenic | 25.0% |
| ! | AAGTTATTCATTGAGAAGAA+TGG | + | chr5.3:24323155-24323174 | MS.gene027544:CDS | 25.0% |
| ! | AAGTTATTGAAGGAATGAAA+TGG | + | chr5.3:24323016-24323035 | MS.gene027544:CDS | 25.0% |
| ! | ACATTGTCTCAATATATCAT+TGG | + | chr5.3:24321876-24321895 | MS.gene027544:intron | 25.0% |
| ! | AGTTATTGAAGGAATGAAAT+GGG | + | chr5.3:24323017-24323036 | MS.gene027544:CDS | 25.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5.3:24321334-24321353 | None:intergenic | 25.0% |
| ! | GAAATTTAGTTGTTATGTGT+TGG | + | chr5.3:24323128-24323147 | MS.gene027544:CDS | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5.3:24322762-24322781 | MS.gene027544:CDS | 25.0% |
| ! | GTAACAAATGTTGAAGAATT+TGG | + | chr5.3:24323087-24323106 | MS.gene027544:CDS | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5.3:24321532-24321551 | MS.gene027544:CDS | 25.0% |
| ! | TAGCATGAAATGGAATTTAT+GGG | - | chr5.3:24321701-24321720 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAATGAAAATAG+TGG | + | chr5.3:24322847-24322866 | MS.gene027544:CDS | 25.0% |
| ! | TTAGCATGAAATGGAATTTA+TGG | - | chr5.3:24321702-24321721 | None:intergenic | 25.0% |
| ! | TTTCCCGAAAATTAAATTTG+GGG | + | chr5.3:24321768-24321787 | MS.gene027544:intron | 25.0% |
| !! | AAACATGCGCTAAAATTTTA+AGG | + | chr5.3:24322318-24322337 | MS.gene027544:intron | 25.0% |
| !! | AATTATAAGGTTTGGTCTAA+TGG | + | chr5.3:24321939-24321958 | MS.gene027544:intron | 25.0% |
| !! | AGATGCTTAAATTTAGGATT+AGG | - | chr5.3:24322101-24322120 | None:intergenic | 25.0% |
| !! | ATGCTTAAATTTAGGATTAG+GGG | - | chr5.3:24322099-24322118 | None:intergenic | 25.0% |
| !! | ATGGTTAAATTTTTGTTCTG+AGG | - | chr5.3:24321430-24321449 | None:intergenic | 25.0% |
| !! | ATTAGGATTCTTTTTGTACA+TGG | - | chr5.3:24321284-24321303 | None:intergenic | 25.0% |
| !! | GATGCTTAAATTTAGGATTA+GGG | - | chr5.3:24322100-24322119 | None:intergenic | 25.0% |
| !! | TGGTTAAATTTTTGTTCTGA+GGG | - | chr5.3:24321429-24321448 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+TGG | + | chr5.3:24321336-24321355 | MS.gene027544:CDS | 25.0% |
| !!! | AATCCCCCAAATTTAATTTT+CGG | - | chr5.3:24321775-24321794 | None:intergenic | 25.0% |
| AAATGGGAACAAGAAAGATT+TGG | + | chr5.3:24323033-24323052 | MS.gene027544:CDS | 30.0% | |
| AAGCAAAGAAAACTATACGT+TGG | - | chr5.3:24321602-24321621 | None:intergenic | 30.0% | |
| ACAAATGTTGAAGAATTTGG+TGG | + | chr5.3:24323090-24323109 | MS.gene027544:CDS | 30.0% | |
| ACATCAAATTAAGAGCAAGT+GGG | + | chr5.3:24323215-24323234 | MS.gene027544:CDS | 30.0% | |
| AGCAAAGAAAACTATACGTT+GGG | - | chr5.3:24321601-24321620 | None:intergenic | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5.3:24321527-24321546 | MS.gene027544:CDS | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5.3:24321531-24321550 | MS.gene027544:CDS | 30.0% | |
| GAAATAATCAAGAAGAGTCA+TGG | + | chr5.3:24322517-24322536 | MS.gene027544:CDS | 30.0% | |
| GAGAAGAATGGATAAAAGTT+TGG | + | chr5.3:24323167-24323186 | MS.gene027544:CDS | 30.0% | |
| GATGAAAATAGATTGCTTGA+TGG | + | chr5.3:24322943-24322962 | MS.gene027544:CDS | 30.0% | |
| TTAACCATCATTATTTCAGC+AGG | + | chr5.3:24321442-24321461 | MS.gene027544:CDS | 30.0% | |
| TTCCCGAAAATTAAATTTGG+GGG | + | chr5.3:24321769-24321788 | MS.gene027544:intron | 30.0% | |
| TTGAGTTTGGAAGTTATTGA+AGG | + | chr5.3:24323006-24323025 | MS.gene027544:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.3:24322744-24322763 | MS.gene027544:CDS | 30.0% | |
| ! | AATTTGGTGGAACAAACATA+TGG | + | chr5.3:24323103-24323122 | MS.gene027544:CDS | 30.0% |
| ! | GAAAATGAAAATAGTGGAGA+AGG | + | chr5.3:24322853-24322872 | MS.gene027544:CDS | 30.0% |
| ! | GACAATGGTTGATTTAATAC+TGG | - | chr5.3:24321502-24321521 | None:intergenic | 30.0% |
| ! | TAATGATTGTTCTGAATCAG+TGG | + | chr5.3:24322705-24322724 | MS.gene027544:CDS | 30.0% |
| ! | TTAAATTTAGGATTAGGGGA+AGG | - | chr5.3:24322095-24322114 | None:intergenic | 30.0% |
| !! | AACCTGTTGATAATCATTGA+AGG | - | chr5.3:24322497-24322516 | None:intergenic | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5.3:24322496-24322515 | None:intergenic | 30.0% |
| !! | ATCCCCCAAATTTAATTTTC+GGG | - | chr5.3:24321774-24321793 | None:intergenic | 30.0% |
| !!! | AAATTTTTGTTCTGAGGGAA+AGG | - | chr5.3:24321424-24321443 | None:intergenic | 30.0% |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5.3:24322831-24322850 | MS.gene027544:CDS | 30.0% |
| AAAGATTTGGATGGAATGCT+GGG | + | chr5.3:24323046-24323065 | MS.gene027544:CDS | 35.0% | |
| AAGGTCTTGGTTTAACATCA+CGG | - | chr5.3:24322468-24322487 | None:intergenic | 35.0% | |
| AATCATTTGAACCTAACGCT+TGG | - | chr5.3:24322645-24322664 | None:intergenic | 35.0% | |
| AATGGTAAAAAGACAGGCTT+TGG | + | chr5.3:24321957-24321976 | MS.gene027544:intron | 35.0% | |
| ACACTAGCATGGTTTAAACT+CGG | - | chr5.3:24321994-24322013 | None:intergenic | 35.0% | |
| CACATCAAATTAAGAGCAAG+TGG | + | chr5.3:24323214-24323233 | MS.gene027544:CDS | 35.0% | |
| CCAAAGCACATAATATTTCC+TGG | - | chr5.3:24322063-24322082 | None:intergenic | 35.0% | |
| CCAGGAAATATTATGTGCTT+TGG | + | chr5.3:24322060-24322079 | MS.gene027544:intron | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.3:24322748-24322767 | MS.gene027544:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.3:24322751-24322770 | None:intergenic | 35.0% | |
| CGATGAGTTTGGAAAAAGAA+AGG | + | chr5.3:24322206-24322225 | MS.gene027544:intron | 35.0% | |
| GAACATAGCTTCTTCACTTA+GGG | - | chr5.3:24321476-24321495 | None:intergenic | 35.0% | |
| GAGGGTTAATTAGCATGAAA+TGG | - | chr5.3:24321711-24321730 | None:intergenic | 35.0% | |
| TAGTACAAGTTCAAAGGAAG+AGG | + | chr5.3:24322411-24322430 | MS.gene027544:CDS | 35.0% | |
| TAGTAGCGATTAGAAGACAA+TGG | - | chr5.3:24321517-24321536 | None:intergenic | 35.0% | |
| TGAACATAGCTTCTTCACTT+AGG | - | chr5.3:24321477-24321496 | None:intergenic | 35.0% | |
| TGATGTTAAACCAAGACCTT+TGG | + | chr5.3:24322468-24322487 | MS.gene027544:CDS | 35.0% | |
| TGGTCTAATGGTAAAAAGAC+AGG | + | chr5.3:24321951-24321970 | MS.gene027544:intron | 35.0% | |
| TTCACCTGCTGAAATAATGA+TGG | - | chr5.3:24321449-24321468 | None:intergenic | 35.0% | |
| ! | AATGAAAATAGTGGAGAAGG+TGG | + | chr5.3:24322856-24322875 | MS.gene027544:CDS | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5.3:24322982-24323001 | MS.gene027544:CDS | 35.0% |
| !! | ATTTTAGCGCATGTTTGAGT+TGG | - | chr5.3:24322314-24322333 | None:intergenic | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.3:24322993-24323012 | MS.gene027544:CDS | 35.0% |
| !! | TTTTAGCGCATGTTTGAGTT+GGG | - | chr5.3:24322313-24322332 | None:intergenic | 35.0% |
| !!! | AACCATGCTAGTGTTTTTTG+AGG | + | chr5.3:24322000-24322019 | MS.gene027544:intron | 35.0% |
| !!! | GTTTTGATTGTCGATGAGTT+TGG | + | chr5.3:24322195-24322214 | MS.gene027544:intron | 35.0% |
| AACCTAACGCTTGGCTTAAT+TGG | - | chr5.3:24322636-24322655 | None:intergenic | 40.0% | |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.3:24322719-24322738 | MS.gene027544:CDS | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | + | chr5.3:24322570-24322589 | MS.gene027544:CDS | 40.0% | |
| AGAAGGAAGGGAAAGAATCA+AGG | + | chr5.3:24321544-24321563 | MS.gene027544:CDS | 40.0% | |
| AGACAATGTTTCGATGATCG+TGG | - | chr5.3:24321865-24321884 | None:intergenic | 40.0% | |
| AGCCTCAAAAAACACTAGCA+TGG | - | chr5.3:24322005-24322024 | None:intergenic | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | + | chr5.3:24322405-24322424 | MS.gene027544:CDS | 40.0% | |
| CCTTTGAACTTGTACTAGCT+TGG | - | chr5.3:24322408-24322427 | None:intergenic | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | + | chr5.3:24322578-24322597 | MS.gene027544:CDS | 40.0% | |
| GAAAGATTTGGATGGAATGC+TGG | + | chr5.3:24323045-24323064 | MS.gene027544:CDS | 40.0% | |
| GAAGGAAGGGAAAGAATCAA+GGG | + | chr5.3:24321545-24321564 | MS.gene027544:CDS | 40.0% | |
| GATTCAAACAGAAGTTGCCA+AGG | + | chr5.3:24322897-24322916 | MS.gene027544:CDS | 40.0% | |
| GCAAAATCTATCGCTTCAGA+TGG | + | chr5.3:24322547-24322566 | MS.gene027544:CDS | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5.3:24322492-24322511 | MS.gene027544:CDS | 40.0% | |
| GCTCAAACTTACTCTTGCTT+TGG | + | chr5.3:24321367-24321386 | MS.gene027544:CDS | 40.0% | |
| GGGAACAAGAAAGATTTGGA+TGG | + | chr5.3:24323037-24323056 | MS.gene027544:CDS | 40.0% | |
| GGTTCAGTGAATACTCACAA+AGG | - | chr5.3:24322042-24322061 | None:intergenic | 40.0% | |
| GTGCAAGAACAATAGAGTCA+AGG | + | chr5.3:24321393-24321412 | MS.gene027544:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5.3:24321325-24321344 | None:intergenic | 40.0% | |
| TAATCATTGAAGGGCTCCAA+AGG | - | chr5.3:24322487-24322506 | None:intergenic | 40.0% | |
| TACCAATTAAGCCAAGCGTT+AGG | + | chr5.3:24322631-24322650 | MS.gene027544:CDS | 40.0% | |
| TTGAAGGAAAGGATGCTGTT+TGG | + | chr5.3:24322920-24322939 | MS.gene027544:CDS | 40.0% | |
| TTGTGAGTATTCACTGAACC+AGG | + | chr5.3:24322042-24322061 | MS.gene027544:intron | 40.0% | |
| ! | CTTGGCTTAATTGGTAGTTG+CGG | - | chr5.3:24322627-24322646 | None:intergenic | 40.0% |
| ! | GAGATTGGTTGAGTCATGAT+AGG | - | chr5.3:24322287-24322306 | None:intergenic | 40.0% |
| ! | GATTGCTTGATGGAGTGTTA+TGG | + | chr5.3:24322953-24322972 | MS.gene027544:CDS | 40.0% |
| ! | TGAAGGAAAGGATGCTGTTT+GGG | + | chr5.3:24322921-24322940 | MS.gene027544:CDS | 40.0% |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | + | chr5.3:24322712-24322731 | MS.gene027544:CDS | 40.0% |
| ! | TTGGCTTAATTGGTAGTTGC+GGG | - | chr5.3:24322626-24322645 | None:intergenic | 40.0% |
| !!! | ATGCTAGTGTTTTTTGAGGC+TGG | + | chr5.3:24322004-24322023 | MS.gene027544:intron | 40.0% |
| ACAGAAGTTGCCAAGGTTGA+AGG | + | chr5.3:24322904-24322923 | MS.gene027544:CDS | 45.0% | |
| AGCATCCTTTCCTTCAACCT+TGG | - | chr5.3:24322917-24322936 | None:intergenic | 45.0% | |
| AGCTAACACTTGAGCAACGA+TGG | + | chr5.3:24322812-24322831 | MS.gene027544:CDS | 45.0% | |
| AGTTGCCAAGGTTGAAGGAA+AGG | + | chr5.3:24322909-24322928 | MS.gene027544:CDS | 45.0% | |
| ATTTGGATGGAATGCTGGGA+AGG | + | chr5.3:24323050-24323069 | MS.gene027544:CDS | 45.0% | |
| CATAGCTTCTTCACTTAGGG+TGG | - | chr5.3:24321473-24321492 | None:intergenic | 45.0% | |
| CCTGGGTTATTGAGGGAAAA+AGG | + | chr5.3:24322577-24322596 | MS.gene027544:CDS | 45.0% | |
| CTTCAGATGGAATTCCTCCT+GGG | + | chr5.3:24322560-24322579 | MS.gene027544:CDS | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | + | chr5.3:24322569-24322588 | MS.gene027544:CDS | 45.0% | |
| GCTAACACTTGAGCAACGAT+GGG | + | chr5.3:24322813-24322832 | MS.gene027544:CDS | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | + | chr5.3:24322581-24322600 | MS.gene027544:CDS | 45.0% | |
| TCGATGATCGTGGTTCAACT+AGG | - | chr5.3:24321855-24321874 | None:intergenic | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5.3:24323051-24323070 | MS.gene027544:CDS | 45.0% | |
| ! | ATTTGGTAGCTTCGAACGCA+AGG | - | chr5.3:24322668-24322687 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | - | chr5.3:24322580-24322599 | None:intergenic | 45.0% |
| ! | TGGCTTAATTGGTAGTTGCG+GGG | - | chr5.3:24322625-24322644 | None:intergenic | 45.0% |
| ! | TTTTCCCTCAATAACCCAGG+AGG | - | chr5.3:24322577-24322596 | None:intergenic | 45.0% |
| !! | AAGACAGGCTTTGGACTTAG+AGG | + | chr5.3:24321966-24321985 | MS.gene027544:intron | 45.0% |
| !! | GTTTGAGTTGGGTGTGAGAT+TGG | - | chr5.3:24322302-24322321 | None:intergenic | 45.0% |
| !! | TTAAATAAATTGAATATTAT+AGG | + | chr5.3:24321648-24321667 | MS.gene027544:intron | 5.0% |
| CTTGAATTTGGCCCTGATGG+TGG | - | chr5.3:24321322-24321341 | None:intergenic | 50.0% | |
| GCTTCAGATGGAATTCCTCC+TGG | + | chr5.3:24322559-24322578 | MS.gene027544:CDS | 50.0% | |
| TTGAAGGGCTCCAAAGGTCT+TGG | - | chr5.3:24322481-24322500 | None:intergenic | 50.0% | |
| TTTCAGACCCACCACCATCA+GGG | + | chr5.3:24321308-24321327 | MS.gene027544:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5.3:24321318-24321337 | None:intergenic | 50.0% |
| !! | GGTGGGTCTGAAAGAGCATT+AGG | - | chr5.3:24321301-24321320 | None:intergenic | 50.0% |
| CTTTCAGACCCACCACCATC+AGG | + | chr5.3:24321307-24321326 | MS.gene027544:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5.3:24321319-24321338 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 24321259 | 24323242 | 24321259 | ID=MS.gene027544 |
| chr5.3 | mRNA | 24321259 | 24323242 | 24321259 | ID=MS.gene027544.t1;Parent=MS.gene027544 |
| chr5.3 | exon | 24321259 | 24321566 | 24321259 | ID=MS.gene027544.t1.exon1;Parent=MS.gene027544.t1 |
| chr5.3 | CDS | 24321259 | 24321566 | 24321259 | ID=cds.MS.gene027544.t1;Parent=MS.gene027544.t1 |
| chr5.3 | exon | 24322405 | 24323242 | 24322405 | ID=MS.gene027544.t1.exon2;Parent=MS.gene027544.t1 |
| chr5.3 | CDS | 24322405 | 24323242 | 24322405 | ID=cds.MS.gene027544.t1;Parent=MS.gene027544.t1 |
| Gene Sequence |
| Protein sequence |
