Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045965.t1 | XP_013452693.1 | 97.8 | 400 | 8 | 1 | 1 | 400 | 1 | 399 | 1.50E-229 | 805.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045965.t1 | A0A072UB96 | 97.8 | 400 | 8 | 1 | 1 | 400 | 1 | 399 | 1.1e-229 | 805.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68293 | MS.gene045965 | PPI |
| MS.gene045965 | MS.gene43935 | PPI |
| MS.gene045965 | MS.gene053932 | PPI |
| MS.gene045965 | MS.gene78745 | PPI |
| MS.gene68296 | MS.gene045965 | PPI |
| MS.gene045965 | MS.gene027538 | PPI |
| MS.gene045965 | MS.gene027536 | PPI |
| MS.gene045965 | MS.gene45120 | PPI |
| MS.gene045965 | MS.gene45118 | PPI |
| MS.gene045965 | MS.gene027540 | PPI |
| MS.gene045965 | MS.gene042700 | PPI |
| MS.gene68297 | MS.gene045965 | PPI |
| MS.gene45115 | MS.gene045965 | PPI |
| MS.gene045965 | MS.gene68295 | PPI |
| MS.gene045965 | MS.gene45114 | PPI |
| MS.gene045965 | MS.gene027535 | PPI |
| MS.gene045965 | MS.gene45117 | PPI |
| MS.gene045965 | MS.gene027539 | PPI |
| MS.gene045965 | MS.gene45116 | PPI |
| MS.gene45117 | MS.gene045965 | PPI |
| MS.gene045965 | MS.gene027537 | PPI |
| MS.gene045965 | MS.gene027534 | PPI |
| MS.gene045965 | MS.gene68292 | PPI |
| MS.gene68295 | MS.gene045965 | PPI |
| MS.gene045965 | MS.gene68298 | PPI |
| MS.gene045965 | MS.gene027543 | PPI |
| MS.gene045965 | MS.gene43936 | PPI |
| MS.gene027544 | MS.gene045965 | PPI |
| MS.gene045965 | MS.gene45119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045965.t1 | MTR_6g472110 | 97.750 | 400 | 8 | 1 | 1 | 400 | 1 | 399 | 0.0 | 811 |
| MS.gene045965.t1 | MTR_5g035690 | 50.980 | 408 | 170 | 14 | 1 | 400 | 1 | 386 | 3.51e-128 | 374 |
| MS.gene045965.t1 | MTR_5g035665 | 50.995 | 402 | 172 | 11 | 1 | 400 | 1 | 379 | 9.10e-126 | 368 |
| MS.gene045965.t1 | MTR_5g035750 | 49.507 | 406 | 180 | 12 | 1 | 400 | 1 | 387 | 7.07e-123 | 361 |
| MS.gene045965.t1 | MTR_5g035760 | 50.124 | 403 | 175 | 13 | 1 | 400 | 1 | 380 | 8.52e-119 | 350 |
| MS.gene045965.t1 | MTR_5g035670 | 48.756 | 402 | 183 | 10 | 1 | 400 | 1 | 381 | 2.74e-117 | 347 |
| MS.gene045965.t1 | MTR_6g016660 | 42.439 | 410 | 214 | 11 | 1 | 400 | 1 | 398 | 1.98e-100 | 304 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045965.t1 | AT1G13480 | 43.176 | 403 | 210 | 8 | 1 | 400 | 1 | 387 | 2.35e-102 | 308 |
| MS.gene045965.t1 | AT1G13520 | 44.444 | 405 | 202 | 10 | 1 | 400 | 1 | 387 | 3.93e-101 | 305 |
| MS.gene045965.t1 | AT1G13530 | 44.691 | 405 | 199 | 10 | 1 | 400 | 1 | 385 | 5.67e-97 | 295 |
| MS.gene045965.t1 | AT1G13490 | 43.069 | 404 | 204 | 8 | 1 | 400 | 1 | 382 | 3.94e-92 | 282 |
| MS.gene045965.t1 | AT1G13500 | 44.988 | 409 | 193 | 12 | 1 | 400 | 1 | 386 | 7.08e-92 | 282 |
| MS.gene045965.t1 | AT1G13470 | 42.506 | 407 | 198 | 15 | 1 | 400 | 1 | 378 | 4.50e-89 | 274 |
| MS.gene045965.t1 | AT1G13540 | 42.543 | 409 | 198 | 16 | 1 | 400 | 1 | 381 | 1.16e-88 | 273 |
| MS.gene045965.t1 | AT1G13490 | 42.184 | 403 | 190 | 9 | 1 | 400 | 1 | 363 | 2.63e-86 | 266 |
| MS.gene045965.t1 | AT1G13510 | 42.260 | 407 | 201 | 14 | 1 | 400 | 1 | 380 | 1.19e-84 | 263 |
| MS.gene045965.t1 | AT1G61600 | 38.979 | 431 | 222 | 12 | 1 | 400 | 1 | 421 | 5.31e-84 | 263 |
| MS.gene045965.t1 | AT1G13550 | 39.259 | 405 | 218 | 9 | 1 | 397 | 1 | 385 | 5.62e-78 | 246 |
Find 89 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACCAAAACACCAGAATT+AGG | 0.174233 | 5.4:+41893901 | None:intergenic |
| TGATAATAATGATGGTAAAA+AGG | 0.194360 | 5.4:-41892526 | MS.gene045965:CDS |
| AGAATTTGAAGGGACTAATA+AGG | 0.248217 | 5.4:-41892259 | MS.gene045965:CDS |
| AATAAGGGATGGAAGAAATT+TGG | 0.251556 | 5.4:-41892243 | MS.gene045965:CDS |
| TCAAACACCATCATCAATTA+AGG | 0.264161 | 5.4:-41892152 | MS.gene045965:CDS |
| TTGAAAACAACCTCTTGTTT+TGG | 0.266662 | 5.4:-41893865 | MS.gene045965:CDS |
| AGGCCCTAATTCTGGTGTTT+TGG | 0.301149 | 5.4:-41893905 | MS.gene045965:CDS |
| GCTATGGTGAAATTGAATTC+TGG | 0.320933 | 5.4:+41892705 | None:intergenic |
| CCACCAGAAGGCCCTAATTC+TGG | 0.339823 | 5.4:-41893913 | MS.gene045965:CDS |
| CTGATATCTAAAGGATGAAT+TGG | 0.361943 | 5.4:+41892927 | None:intergenic |
| ACACCAGAATTAGGGCCTTC+TGG | 0.363127 | 5.4:+41893910 | None:intergenic |
| AGATTACACTAGAGCAGAAA+TGG | 0.366742 | 5.4:-41892566 | MS.gene045965:CDS |
| ATCATCAATTAAGGAGCAAA+TGG | 0.366805 | 5.4:-41892143 | MS.gene045965:CDS |
| CAGGAGAGGGTTGGATGGCT+TGG | 0.376011 | 5.4:-41892318 | MS.gene045965:CDS |
| GAAATTGAATTCTGGTTTCC+CGG | 0.376852 | 5.4:+41892713 | None:intergenic |
| GGGAGAGTACCATGAAGTTA+AGG | 0.382423 | 5.4:-41893839 | MS.gene045965:CDS |
| TACTATGTCATACATCTTCA+TGG | 0.383281 | 5.4:-41893688 | MS.gene045965:CDS |
| AAATCAAGTGATTCAAGTCT+TGG | 0.387085 | 5.4:-41892768 | MS.gene045965:CDS |
| GAACAGTGTGGGTTTGAGTA+TGG | 0.387431 | 5.4:-41892367 | MS.gene045965:CDS |
| CCCTTCATGTTTATCAAAGA+AGG | 0.391686 | 5.4:-41892636 | MS.gene045965:CDS |
| GGAGAGTACCATGAAGTTAA+GGG | 0.402330 | 5.4:-41893838 | MS.gene045965:CDS |
| GTAGAAGCAAAGTTACATTA+AGG | 0.416879 | 5.4:-41892872 | MS.gene045965:CDS |
| AAAGTGTTGTTGTGGGAAAA+TGG | 0.418156 | 5.4:-41892665 | MS.gene045965:CDS |
| TTACCAAAACACCAGAATTA+GGG | 0.422217 | 5.4:+41893902 | None:intergenic |
| AAAGAAGTGGTTGTAATTGC+TGG | 0.422244 | 5.4:-41892471 | MS.gene045965:CDS |
| TGAGAGAATGAAGTGGGAGC+AGG | 0.430736 | 5.4:-41892337 | MS.gene045965:CDS |
| GCTAAATCTGTTGCTGAAGA+TGG | 0.430828 | 5.4:-41892837 | MS.gene045965:CDS |
| GGAATTTCAAGTTAAGAAAG+TGG | 0.435170 | 5.4:-41892283 | MS.gene045965:CDS |
| TTCTGAACATCTGTTTGCTA+TGG | 0.444564 | 5.4:+41892689 | None:intergenic |
| AAGGCAAACCCTTAACTTCA+TGG | 0.449187 | 5.4:+41893830 | None:intergenic |
| AAGAAAGTGGAAGAATTTGA+AGG | 0.451778 | 5.4:-41892270 | MS.gene045965:CDS |
| GAATGAAGTGGGAGCAGGAG+AGG | 0.455395 | 5.4:-41892332 | MS.gene045965:CDS |
| TTTAATAGTATCAATAATGT+TGG | 0.466830 | 5.4:-41892396 | MS.gene045965:CDS |
| ATTTGCTCCTTAATTGATGA+TGG | 0.471685 | 5.4:+41892145 | None:intergenic |
| GACAATGGCTGATTAAGAAC+TGG | 0.473764 | 5.4:+41893721 | None:intergenic |
| AGCTATGATGGATAATAAGT+TGG | 0.474243 | 5.4:-41892442 | MS.gene045965:CDS |
| AATGAAGTGGGAGCAGGAGA+GGG | 0.474655 | 5.4:-41892331 | MS.gene045965:CDS |
| GACTTCTTGTACAAAGAAAG+AGG | 0.484167 | 5.4:+41893958 | None:intergenic |
| GAATTTGAAGGGACTAATAA+GGG | 0.485288 | 5.4:-41892258 | MS.gene045965:CDS |
| GAGAGGGTTGGATGGCTTGG+TGG | 0.489813 | 5.4:-41892315 | MS.gene045965:CDS |
| TGCTGGGTGGGAAGCTATGA+TGG | 0.490086 | 5.4:-41892454 | MS.gene045965:CDS |
| TATTTGTCACTGATATCTAA+AGG | 0.492371 | 5.4:+41892918 | None:intergenic |
| TCAAGTCTTGGAGAAGCATC+AGG | 0.497137 | 5.4:-41892756 | MS.gene045965:CDS |
| TCCTTCTTTGATAAACATGA+AGG | 0.498261 | 5.4:+41892635 | None:intergenic |
| ATGTATGACATAGTATTGAT+TGG | 0.499829 | 5.4:+41893696 | None:intergenic |
| CATCTTCATGGCAAGAAAAG+AGG | 0.503885 | 5.4:-41893676 | MS.gene045965:CDS |
| TTCTGGTTTCCCGGCACGGA+GGG | 0.509548 | 5.4:+41892722 | None:intergenic |
| TTTGTTATAAAGAGATTGGA+TGG | 0.511821 | 5.4:-41892198 | MS.gene045965:CDS |
| GTAGATGAATCCCTCCGTGC+CGG | 0.522939 | 5.4:-41892732 | MS.gene045965:CDS |
| AAGTGGGAGCAGGAGAGGGT+TGG | 0.525230 | 5.4:-41892327 | MS.gene045965:CDS |
| TAGATGAATCCCTCCGTGCC+GGG | 0.528223 | 5.4:-41892731 | MS.gene045965:CDS |
| CTGATTAAGAACTGGAATGA+AGG | 0.530740 | 5.4:+41893729 | None:intergenic |
| GAATTAGGGCCTTCTGGTGG+AGG | 0.531123 | 5.4:+41893916 | None:intergenic |
| TGAATTCTGGTTTCCCGGCA+CGG | 0.533001 | 5.4:+41892718 | None:intergenic |
| ATGGCTTGGTGGGAAAGAAA+AGG | 0.534199 | 5.4:-41892304 | MS.gene045965:CDS |
| TCATCAATTAAGGAGCAAAT+GGG | 0.535072 | 5.4:-41892142 | MS.gene045965:CDS |
| TCAGAAGAAAGTGTTGTTGT+GGG | 0.544892 | 5.4:-41892672 | MS.gene045965:CDS |
| AGAGGGTTGGATGGCTTGGT+GGG | 0.548797 | 5.4:-41892314 | MS.gene045965:CDS |
| GATTACACTAGAGCAGAAAT+GGG | 0.554813 | 5.4:-41892565 | MS.gene045965:CDS |
| TTTGTACAAGAAGTCTGAAG+AGG | 0.555051 | 5.4:-41893950 | MS.gene045965:CDS |
| GGGAGCAGGAGAGGGTTGGA+TGG | 0.555243 | 5.4:-41892323 | MS.gene045965:CDS |
| GTTGGAGAAAAGAACAGTGT+GGG | 0.558075 | 5.4:-41892378 | MS.gene045965:CDS |
| CTGATCTATAAAACAACTCA+AGG | 0.565365 | 5.4:+41893791 | None:intergenic |
| TTCAGAAGAAAGTGTTGTTG+TGG | 0.567930 | 5.4:-41892673 | MS.gene045965:CDS |
| ATCTTCATGGCAAGAAAAGA+GGG | 0.569344 | 5.4:-41893675 | MS.gene045965:intron |
| AGTGGTTGTAATTGCTGGGT+GGG | 0.569655 | 5.4:-41892466 | MS.gene045965:CDS |
| TAACTCAAAGGAGGAAGATG+TGG | 0.576074 | 5.4:-41892985 | MS.gene045965:CDS |
| AGCAAAGTTACATTAAGGAG+TGG | 0.577098 | 5.4:-41892867 | MS.gene045965:CDS |
| AGAAAGTGGAAGAATTTGAA+GGG | 0.580351 | 5.4:-41892269 | MS.gene045965:CDS |
| TATGACATAGTATTGATTGG+AGG | 0.584322 | 5.4:+41893699 | None:intergenic |
| TTGAAGGGACTAATAAGGGA+TGG | 0.589391 | 5.4:-41892254 | MS.gene045965:CDS |
| CCTTCTTTGATAAACATGAA+GGG | 0.590946 | 5.4:+41892636 | None:intergenic |
| CTGAAGATGGATACCCTCCA+AGG | 0.601083 | 5.4:-41892824 | MS.gene045965:CDS |
| GAAATTTGGATGTTATGTGT+TGG | 0.605051 | 5.4:-41892229 | MS.gene045965:CDS |
| CAATAGTTGAGAGAATGAAG+TGG | 0.612002 | 5.4:-41892344 | MS.gene045965:CDS |
| GGAAGCATACAATAACTCAA+AGG | 0.617419 | 5.4:-41892997 | MS.gene045965:CDS |
| CTCTCATTACCTCCACCAGA+AGG | 0.619265 | 5.4:-41893925 | MS.gene045965:CDS |
| CTCTCCCAACCCAAAACAAG+AGG | 0.619270 | 5.4:+41893855 | None:intergenic |
| AATAGTTGAGAGAATGAAGT+GGG | 0.629735 | 5.4:-41892343 | MS.gene045965:CDS |
| TGTTGGAGAAAAGAACAGTG+TGG | 0.630693 | 5.4:-41892379 | MS.gene045965:CDS |
| AAGAAGTGGTTGTAATTGCT+GGG | 0.631620 | 5.4:-41892470 | MS.gene045965:CDS |
| TATAGAATATGTATGTGACT+AGG | 0.634027 | 5.4:-41893981 | None:intergenic |
| AGCATACAATAACTCAAAGG+AGG | 0.645051 | 5.4:-41892994 | MS.gene045965:CDS |
| TAGTATTGATTGGAGGACAA+TGG | 0.649023 | 5.4:+41893706 | None:intergenic |
| CCAGAATTAGGGCCTTCTGG+TGG | 0.656141 | 5.4:+41893913 | None:intergenic |
| AATGTAACTTTGCTTCTACG+AGG | 0.675300 | 5.4:+41892876 | None:intergenic |
| ATTCTGGTTTCCCGGCACGG+AGG | 0.691492 | 5.4:+41892721 | None:intergenic |
| AAGTGGTTGTAATTGCTGGG+TGG | 0.699538 | 5.4:-41892467 | MS.gene045965:CDS |
| ATGATGGTGTTTGAAAGCAT+AGG | 0.724364 | 5.4:+41892161 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATAATTTCTTAACT+TGG | - | chr5.4:41892476-41892495 | MS.gene045965:CDS | 10.0% |
| !! | TTTAATAGTATCAATAATGT+TGG | - | chr5.4:41893714-41893733 | MS.gene045965:CDS | 15.0% |
| !! | AGTACTATATAACTAACATT+TGG | + | chr5.4:41892534-41892553 | None:intergenic | 20.0% |
| !! | AGTATTATACTGATGTAATT+TGG | - | chr5.4:41893076-41893095 | MS.gene045965:intron | 20.0% |
| !! | GATAATAATGATGGTAAAAA+GGG | - | chr5.4:41893585-41893604 | MS.gene045965:intron | 20.0% |
| !! | TGATAATAATGATGGTAAAA+AGG | - | chr5.4:41893584-41893603 | MS.gene045965:intron | 20.0% |
| !!! | AATTTAAAATTGGTTCAACA+CGG | + | chr5.4:41893021-41893040 | None:intergenic | 20.0% |
| !!! | TAAATTTTTCGTCTGTTATT+TGG | + | chr5.4:41892687-41892706 | None:intergenic | 20.0% |
| !!! | TCATGTCAACAATTTAAAAT+TGG | + | chr5.4:41893031-41893050 | None:intergenic | 20.0% |
| !!! | TTTTCATGTGATAATAATGA+TGG | - | chr5.4:41893576-41893595 | MS.gene045965:intron | 20.0% |
| ! | AAATAACAGGGAATATACTT+AGG | - | chr5.4:41892568-41892587 | MS.gene045965:CDS | 25.0% |
| ! | TATTTGTCACTGATATCTAA+AGG | + | chr5.4:41893195-41893214 | None:intergenic | 25.0% |
| ! | TTATATAGTACTACGACATA+AGG | - | chr5.4:41892542-41892561 | MS.gene045965:CDS | 25.0% |
| !! | TTTCTAGTATTGTAGCATAA+GGG | - | chr5.4:41892800-41892819 | MS.gene045965:CDS | 25.0% |
| !! | TTTGTTATAAAGAGATTGGA+TGG | - | chr5.4:41893912-41893931 | MS.gene045965:CDS | 25.0% |
| !!! | AATTTGGTTTTTCTTCTGTA+GGG | - | chr5.4:41893092-41893111 | MS.gene045965:intron | 25.0% |
| !!! | ATGTATGACATAGTATTGAT+TGG | + | chr5.4:41892417-41892436 | None:intergenic | 25.0% |
| !!! | GACTTTTGTTATAAAGAGAT+TGG | - | chr5.4:41893908-41893927 | MS.gene045965:CDS | 25.0% |
| !!! | TAATTTGGTTTTTCTTCTGT+AGG | - | chr5.4:41893091-41893110 | MS.gene045965:intron | 25.0% |
| !!! | TTTTCTAGTATTGTAGCATA+AGG | - | chr5.4:41892799-41892818 | MS.gene045965:CDS | 25.0% |
| AAATCAAGTGATTCAAGTCT+TGG | - | chr5.4:41893342-41893361 | MS.gene045965:intron | 30.0% | |
| AAGAAAGTGGAAGAATTTGA+AGG | - | chr5.4:41893840-41893859 | MS.gene045965:CDS | 30.0% | |
| AATAAGGGATGGAAGAAATT+TGG | - | chr5.4:41893867-41893886 | MS.gene045965:CDS | 30.0% | |
| AATACTTGAACATGTCAAGA+AGG | + | chr5.4:41893062-41893081 | None:intergenic | 30.0% | |
| AATAGTTGAGAGAATGAAGT+GGG | - | chr5.4:41893767-41893786 | MS.gene045965:CDS | 30.0% | |
| ACATTGAATTTCGATGACAT+TGG | - | chr5.4:41892593-41892612 | MS.gene045965:CDS | 30.0% | |
| AGAAAGTGGAAGAATTTGAA+GGG | - | chr5.4:41893841-41893860 | MS.gene045965:CDS | 30.0% | |
| AGAATTTGAAGGGACTAATA+AGG | - | chr5.4:41893851-41893870 | MS.gene045965:CDS | 30.0% | |
| ATCATCAATTAAGGAGCAAA+TGG | - | chr5.4:41893967-41893986 | MS.gene045965:CDS | 30.0% | |
| ATTACCAAAACACCAGAATT+AGG | + | chr5.4:41892212-41892231 | None:intergenic | 30.0% | |
| ATTTGCTCCTTAATTGATGA+TGG | + | chr5.4:41893968-41893987 | None:intergenic | 30.0% | |
| CCTTCTTTGATAAACATGAA+GGG | + | chr5.4:41893477-41893496 | None:intergenic | 30.0% | |
| CTGATATCTAAAGGATGAAT+TGG | + | chr5.4:41893186-41893205 | None:intergenic | 30.0% | |
| CTGATCTATAAAACAACTCA+AGG | + | chr5.4:41892322-41892341 | None:intergenic | 30.0% | |
| GAAATTTGGATGTTATGTGT+TGG | - | chr5.4:41893881-41893900 | MS.gene045965:CDS | 30.0% | |
| GAATTTGAAGGGACTAATAA+GGG | - | chr5.4:41893852-41893871 | MS.gene045965:CDS | 30.0% | |
| GACATAAGGTTGAAATAACA+GGG | - | chr5.4:41892556-41892575 | MS.gene045965:CDS | 30.0% | |
| GTAGAAGCAAAGTTACATTA+AGG | - | chr5.4:41893238-41893257 | MS.gene045965:intron | 30.0% | |
| GTTAGATTTGAATACAGGTT+GGG | - | chr5.4:41892936-41892955 | MS.gene045965:CDS | 30.0% | |
| TAACTAACATTTGGTTGAAC+TGG | + | chr5.4:41892525-41892544 | None:intergenic | 30.0% | |
| TACTATGTCATACATCTTCA+TGG | - | chr5.4:41892422-41892441 | MS.gene045965:CDS | 30.0% | |
| TCAAACACCATCATCAATTA+AGG | - | chr5.4:41893958-41893977 | MS.gene045965:CDS | 30.0% | |
| TCATCAATTAAGGAGCAAAT+GGG | - | chr5.4:41893968-41893987 | MS.gene045965:CDS | 30.0% | |
| TCCTTCTTTGATAAACATGA+AGG | + | chr5.4:41893478-41893497 | None:intergenic | 30.0% | |
| TGTTAGATTTGAATACAGGT+TGG | - | chr5.4:41892935-41892954 | MS.gene045965:CDS | 30.0% | |
| TTACCAAAACACCAGAATTA+GGG | + | chr5.4:41892211-41892230 | None:intergenic | 30.0% | |
| TTCTACTTAAAAACCTTGGA+GGG | + | chr5.4:41893302-41893321 | None:intergenic | 30.0% | |
| ! | ACTTCAGTGACTTTAAGTTT+CGG | + | chr5.4:41892659-41892678 | None:intergenic | 30.0% |
| !! | AGCTATGATGGATAATAAGT+TGG | - | chr5.4:41893668-41893687 | MS.gene045965:intron | 30.0% |
| !! | CTTGAGTTGTTTTATAGATC+AGG | - | chr5.4:41892320-41892339 | MS.gene045965:CDS | 30.0% |
| !! | GGAATTTCAAGTTAAGAAAG+TGG | - | chr5.4:41893827-41893846 | MS.gene045965:CDS | 30.0% |
| !! | TATGACATAGTATTGATTGG+AGG | + | chr5.4:41892414-41892433 | None:intergenic | 30.0% |
| !! | TTGAAAACAACCTCTTGTTT+TGG | - | chr5.4:41892245-41892264 | MS.gene045965:CDS | 30.0% |
| !!! | ATGTAGCTGAAAGTTTTTTG+TGG | - | chr5.4:41893691-41893710 | MS.gene045965:CDS | 30.0% |
| !!! | GACATCAGTGTATTTTGATA+AGG | - | chr5.4:41892617-41892636 | MS.gene045965:CDS | 30.0% |
| !!! | TGAAAACAACCTCTTGTTTT+GGG | - | chr5.4:41892246-41892265 | MS.gene045965:CDS | 30.0% |
| AAAGAAGTGGTTGTAATTGC+TGG | - | chr5.4:41893639-41893658 | MS.gene045965:intron | 35.0% | |
| AAGAAGTGGTTGTAATTGCT+GGG | - | chr5.4:41893640-41893659 | MS.gene045965:intron | 35.0% | |
| AATGTAACTTTGCTTCTACG+AGG | + | chr5.4:41893237-41893256 | None:intergenic | 35.0% | |
| AGATTACACTAGAGCAGAAA+TGG | - | chr5.4:41893544-41893563 | MS.gene045965:intron | 35.0% | |
| AGCAAAGTTACATTAAGGAG+TGG | - | chr5.4:41893243-41893262 | MS.gene045965:intron | 35.0% | |
| AGCATACAATAACTCAAAGG+AGG | - | chr5.4:41893116-41893135 | MS.gene045965:intron | 35.0% | |
| ATCTTCATGGCAAGAAAAGA+GGG | - | chr5.4:41892435-41892454 | MS.gene045965:CDS | 35.0% | |
| CAATAGTTGAGAGAATGAAG+TGG | - | chr5.4:41893766-41893785 | MS.gene045965:CDS | 35.0% | |
| CACCTTCTACTTAAAAACCT+TGG | + | chr5.4:41893306-41893325 | None:intergenic | 35.0% | |
| CCCTTCATGTTTATCAAAGA+AGG | - | chr5.4:41893474-41893493 | MS.gene045965:intron | 35.0% | |
| CGACATAAGGTTGAAATAAC+AGG | - | chr5.4:41892555-41892574 | MS.gene045965:CDS | 35.0% | |
| CTGATTAAGAACTGGAATGA+AGG | + | chr5.4:41892384-41892403 | None:intergenic | 35.0% | |
| CTTAAGGGTGGAATTAAAGA+TGG | - | chr5.4:41892732-41892751 | MS.gene045965:CDS | 35.0% | |
| CTTCTACTTAAAAACCTTGG+AGG | + | chr5.4:41893303-41893322 | None:intergenic | 35.0% | |
| GAAACTTAAAGTCACTGAAG+TGG | - | chr5.4:41892658-41892677 | MS.gene045965:CDS | 35.0% | |
| GACTTCTTGTACAAAGAAAG+AGG | + | chr5.4:41892155-41892174 | None:intergenic | 35.0% | |
| GAGCTGTTAGATTTGAATAC+AGG | - | chr5.4:41892931-41892950 | MS.gene045965:CDS | 35.0% | |
| GATTACACTAGAGCAGAAAT+GGG | - | chr5.4:41893545-41893564 | MS.gene045965:intron | 35.0% | |
| GCTATGGTGAAATTGAATTC+TGG | + | chr5.4:41893408-41893427 | None:intergenic | 35.0% | |
| TGCTGTTGTTCAAAAAGAAG+TGG | - | chr5.4:41893626-41893645 | MS.gene045965:intron | 35.0% | |
| TTAAACTCGATCATCAAAGC+AGG | - | chr5.4:41892704-41892723 | MS.gene045965:CDS | 35.0% | |
| TTTGTACAAGAAGTCTGAAG+AGG | - | chr5.4:41892160-41892179 | MS.gene045965:CDS | 35.0% | |
| ! | AACTCAAGGTTCATGTTTTG+AGG | + | chr5.4:41892308-41892327 | None:intergenic | 35.0% |
| ! | ATGATGGTGTTTGAAAGCAT+AGG | + | chr5.4:41893952-41893971 | None:intergenic | 35.0% |
| ! | GGAAGCATACAATAACTCAA+AGG | - | chr5.4:41893113-41893132 | MS.gene045965:intron | 35.0% |
| ! | TTCTGAACATCTGTTTGCTA+TGG | + | chr5.4:41893424-41893443 | None:intergenic | 35.0% |
| !! | AAAGTGTTGTTGTGGGAAAA+TGG | - | chr5.4:41893445-41893464 | MS.gene045965:intron | 35.0% |
| !! | ACTCAAGGTTCATGTTTTGA+GGG | + | chr5.4:41892307-41892326 | None:intergenic | 35.0% |
| !! | GAAATTGAATTCTGGTTTCC+CGG | + | chr5.4:41893400-41893419 | None:intergenic | 35.0% |
| !! | TAGTATTGATTGGAGGACAA+TGG | + | chr5.4:41892407-41892426 | None:intergenic | 35.0% |
| !! | TCAGAAGAAAGTGTTGTTGT+GGG | - | chr5.4:41893438-41893457 | MS.gene045965:intron | 35.0% |
| !! | TTCAGAAGAAAGTGTTGTTG+TGG | - | chr5.4:41893437-41893456 | MS.gene045965:intron | 35.0% |
| !!! | CAAGGTTTTTAAGTAGAAGG+TGG | - | chr5.4:41893304-41893323 | MS.gene045965:intron | 35.0% |
| !!! | CTCCAAGGTTTTTAAGTAGA+AGG | - | chr5.4:41893301-41893320 | MS.gene045965:intron | 35.0% |
| AAGGCAAACCCTTAACTTCA+TGG | + | chr5.4:41892283-41892302 | None:intergenic | 40.0% | |
| CATCTTCATGGCAAGAAAAG+AGG | - | chr5.4:41892434-41892453 | MS.gene045965:CDS | 40.0% | |
| GACAATGGCTGATTAAGAAC+TGG | + | chr5.4:41892392-41892411 | None:intergenic | 40.0% | |
| GCTAAATCTGTTGCTGAAGA+TGG | - | chr5.4:41893273-41893292 | MS.gene045965:intron | 40.0% | |
| GTTGGAGAAAAGAACAGTGT+GGG | - | chr5.4:41893732-41893751 | MS.gene045965:CDS | 40.0% | |
| TAACTCAAAGGAGGAAGATG+TGG | - | chr5.4:41893125-41893144 | MS.gene045965:intron | 40.0% | |
| TATCTCTATAACCCTGAACG+TGG | + | chr5.4:41892997-41893016 | None:intergenic | 40.0% | |
| TCATGCACATGTACTCATCA+TGG | + | chr5.4:41892869-41892888 | None:intergenic | 40.0% | |
| TGTTGGAGAAAAGAACAGTG+TGG | - | chr5.4:41893731-41893750 | MS.gene045965:CDS | 40.0% | |
| TTGAAGGGACTAATAAGGGA+TGG | - | chr5.4:41893856-41893875 | MS.gene045965:CDS | 40.0% | |
| !! | GGAGAGTACCATGAAGTTAA+GGG | - | chr5.4:41892272-41892291 | MS.gene045965:CDS | 40.0% |
| !!! | AACAACCTCTTGTTTTGGGT+TGG | - | chr5.4:41892250-41892269 | MS.gene045965:CDS | 40.0% |
| !!! | ACAACCTCTTGTTTTGGGTT+GGG | - | chr5.4:41892251-41892270 | MS.gene045965:CDS | 40.0% |
| !!! | AGGTTCATGTTTTGAGGGAA+AGG | + | chr5.4:41892302-41892321 | None:intergenic | 40.0% |
| AAGTGGTTGTAATTGCTGGG+TGG | - | chr5.4:41893643-41893662 | MS.gene045965:intron | 45.0% | |
| AGTGGTTGTAATTGCTGGGT+GGG | - | chr5.4:41893644-41893663 | MS.gene045965:intron | 45.0% | |
| ATCAAAGCAGGCGTCACTTA+AGG | - | chr5.4:41892716-41892735 | MS.gene045965:CDS | 45.0% | |
| GAACAGTGTGGGTTTGAGTA+TGG | - | chr5.4:41893743-41893762 | MS.gene045965:CDS | 45.0% | |
| TCAAAGCAGGCGTCACTTAA+GGG | - | chr5.4:41892717-41892736 | MS.gene045965:CDS | 45.0% | |
| ! | AGGCCCTAATTCTGGTGTTT+TGG | - | chr5.4:41892205-41892224 | MS.gene045965:CDS | 45.0% |
| !! | ATGGCTTGGTGGGAAAGAAA+AGG | - | chr5.4:41893806-41893825 | MS.gene045965:CDS | 45.0% |
| !! | GGGAGAGTACCATGAAGTTA+AGG | - | chr5.4:41892271-41892290 | MS.gene045965:CDS | 45.0% |
| !! | TCAAGTCTTGGAGAAGCATC+AGG | - | chr5.4:41893354-41893373 | MS.gene045965:intron | 45.0% |
| AACTCTGTTGCACGATGCAG+CGG | - | chr5.4:41892902-41892921 | MS.gene045965:CDS | 50.0% | |
| AATGAAGTGGGAGCAGGAGA+GGG | - | chr5.4:41893779-41893798 | MS.gene045965:CDS | 50.0% | |
| ACACCAGAATTAGGGCCTTC+TGG | + | chr5.4:41892203-41892222 | None:intergenic | 50.0% | |
| CTCTCATTACCTCCACCAGA+AGG | - | chr5.4:41892185-41892204 | MS.gene045965:CDS | 50.0% | |
| CTCTCCCAACCCAAAACAAG+AGG | + | chr5.4:41892258-41892277 | None:intergenic | 50.0% | |
| CTGAAGATGGATACCCTCCA+AGG | - | chr5.4:41893286-41893305 | MS.gene045965:intron | 50.0% | |
| GCAGCGAGTGCTATAACTGT+TGG | + | chr5.4:41892975-41892994 | None:intergenic | 50.0% | |
| GCATCGTGCAACAGAGTTAG+AGG | + | chr5.4:41892900-41892919 | None:intergenic | 50.0% | |
| TGAGAGAATGAAGTGGGAGC+AGG | - | chr5.4:41893773-41893792 | MS.gene045965:CDS | 50.0% | |
| !! | TGAATTCTGGTTTCCCGGCA+CGG | + | chr5.4:41893395-41893414 | None:intergenic | 50.0% |
| AAGCAGGCGTCACTTAAGGG+TGG | - | chr5.4:41892720-41892739 | MS.gene045965:CDS | 55.0% | |
| CCACCAGAAGGCCCTAATTC+TGG | - | chr5.4:41892197-41892216 | MS.gene045965:CDS | 55.0% | |
| CCAGAATTAGGGCCTTCTGG+TGG | + | chr5.4:41892200-41892219 | None:intergenic | 55.0% | |
| GAATGAAGTGGGAGCAGGAG+AGG | - | chr5.4:41893778-41893797 | MS.gene045965:CDS | 55.0% | |
| GAATTAGGGCCTTCTGGTGG+AGG | + | chr5.4:41892197-41892216 | None:intergenic | 55.0% | |
| GTAGATGAATCCCTCCGTGC+CGG | - | chr5.4:41893378-41893397 | MS.gene045965:intron | 55.0% | |
| TAGATGAATCCCTCCGTGCC+GGG | - | chr5.4:41893379-41893398 | MS.gene045965:intron | 55.0% | |
| TGCTGGGTGGGAAGCTATGA+TGG | - | chr5.4:41893656-41893675 | MS.gene045965:intron | 55.0% | |
| !! | AGAGGGTTGGATGGCTTGGT+GGG | - | chr5.4:41893796-41893815 | MS.gene045965:CDS | 55.0% |
| AAGTGGGAGCAGGAGAGGGT+TGG | - | chr5.4:41893783-41893802 | MS.gene045965:CDS | 60.0% | |
| AGCACTCGCTGCCACGTTCA+GGG | - | chr5.4:41892983-41893002 | MS.gene045965:CDS | 60.0% | |
| CAGGAGAGGGTTGGATGGCT+TGG | - | chr5.4:41893792-41893811 | MS.gene045965:CDS | 60.0% | |
| TAGCACTCGCTGCCACGTTC+AGG | - | chr5.4:41892982-41893001 | MS.gene045965:CDS | 60.0% | |
| ! | GAGAGGGTTGGATGGCTTGG+TGG | - | chr5.4:41893795-41893814 | MS.gene045965:CDS | 60.0% |
| !! | ATTCTGGTTTCCCGGCACGG+AGG | + | chr5.4:41893392-41893411 | None:intergenic | 60.0% |
| !! | TTCTGGTTTCCCGGCACGGA+GGG | + | chr5.4:41893391-41893410 | None:intergenic | 60.0% |
| GGGAGCAGGAGAGGGTTGGA+TGG | - | chr5.4:41893787-41893806 | MS.gene045965:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 41892137 | 41893995 | 41892137 | ID=MS.gene045965 |
| chr5.4 | mRNA | 41892137 | 41893995 | 41892137 | ID=MS.gene045965.t1;Parent=MS.gene045965 |
| chr5.4 | exon | 41893676 | 41893995 | 41893676 | ID=MS.gene045965.t1.exon1;Parent=MS.gene045965.t1 |
| chr5.4 | CDS | 41893676 | 41893995 | 41893676 | ID=cds.MS.gene045965.t1;Parent=MS.gene045965.t1 |
| chr5.4 | exon | 41892137 | 41893019 | 41892137 | ID=MS.gene045965.t1.exon2;Parent=MS.gene045965.t1 |
| chr5.4 | CDS | 41892137 | 41893019 | 41892137 | ID=cds.MS.gene045965.t1;Parent=MS.gene045965.t1 |
| Gene Sequence |
| Protein sequence |
