Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43935.t1 | XP_013453735.1 | 92.1 | 381 | 28 | 1 | 1 | 381 | 1 | 379 | 3.20E-205 | 724.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43935.t1 | A0A072UEA2 | 92.1 | 381 | 28 | 1 | 1 | 381 | 1 | 379 | 2.3e-205 | 724.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049457 | MS.gene43935 | 0.803511 | 3.37E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045965 | MS.gene43935 | PPI |
| MS.gene43935 | MS.gene45120 | PPI |
| MS.gene43935 | MS.gene45118 | PPI |
| MS.gene68293 | MS.gene43935 | PPI |
| MS.gene43935 | MS.gene45114 | PPI |
| MS.gene43935 | MS.gene78745 | PPI |
| MS.gene43935 | MS.gene027538 | PPI |
| MS.gene43935 | MS.gene027536 | PPI |
| MS.gene027535 | MS.gene43935 | PPI |
| MS.gene43935 | MS.gene027539 | PPI |
| MS.gene45115 | MS.gene43935 | PPI |
| MS.gene43935 | MS.gene45116 | PPI |
| MS.gene43935 | MS.gene027540 | PPI |
| MS.gene68296 | MS.gene43935 | PPI |
| MS.gene43935 | MS.gene027537 | PPI |
| MS.gene43935 | MS.gene027534 | PPI |
| MS.gene43935 | MS.gene042700 | PPI |
| MS.gene45117 | MS.gene43935 | PPI |
| MS.gene43935 | MS.gene68298 | PPI |
| MS.gene43935 | MS.gene027535 | PPI |
| MS.gene68297 | MS.gene43935 | PPI |
| MS.gene43935 | MS.gene43936 | PPI |
| MS.gene43935 | MS.gene45119 | PPI |
| MS.gene68295 | MS.gene43935 | PPI |
| MS.gene43935 | MS.gene68292 | PPI |
| MS.gene43935 | MS.gene027543 | PPI |
| MS.gene027544 | MS.gene43935 | PPI |
| MS.gene027534 | MS.gene43935 | PPI |
| MS.gene43935 | MS.gene053932 | PPI |
| MS.gene027537 | MS.gene43935 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43935.t1 | MTR_5g035665 | 92.126 | 381 | 28 | 1 | 1 | 381 | 1 | 379 | 0.0 | 731 |
| MS.gene43935.t1 | MTR_5g035690 | 87.629 | 388 | 39 | 2 | 1 | 381 | 1 | 386 | 0.0 | 699 |
| MS.gene43935.t1 | MTR_5g035670 | 85.827 | 381 | 54 | 0 | 1 | 381 | 1 | 381 | 0.0 | 672 |
| MS.gene43935.t1 | MTR_5g035750 | 83.548 | 389 | 54 | 2 | 1 | 381 | 1 | 387 | 0.0 | 667 |
| MS.gene43935.t1 | MTR_5g035760 | 77.165 | 381 | 86 | 1 | 1 | 381 | 1 | 380 | 0.0 | 604 |
| MS.gene43935.t1 | MTR_6g472110 | 50.500 | 400 | 178 | 8 | 1 | 381 | 1 | 399 | 2.62e-126 | 369 |
| MS.gene43935.t1 | MTR_6g016660 | 43.860 | 399 | 205 | 8 | 1 | 381 | 1 | 398 | 2.59e-102 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43935.t1 | AT1G13480 | 44.810 | 395 | 196 | 9 | 1 | 381 | 1 | 387 | 2.38e-106 | 318 |
| MS.gene43935.t1 | AT1G13490 | 46.292 | 391 | 191 | 9 | 1 | 381 | 1 | 382 | 4.28e-105 | 315 |
| MS.gene43935.t1 | AT1G13510 | 44.784 | 393 | 192 | 12 | 1 | 381 | 1 | 380 | 5.45e-105 | 314 |
| MS.gene43935.t1 | AT1G13530 | 46.970 | 396 | 184 | 12 | 1 | 381 | 1 | 385 | 2.92e-104 | 313 |
| MS.gene43935.t1 | AT1G13520 | 45.088 | 397 | 192 | 12 | 1 | 381 | 1 | 387 | 6.92e-103 | 309 |
| MS.gene43935.t1 | AT1G13540 | 44.670 | 394 | 192 | 12 | 1 | 381 | 1 | 381 | 5.34e-101 | 304 |
| MS.gene43935.t1 | AT1G13470 | 45.408 | 392 | 189 | 11 | 1 | 381 | 1 | 378 | 6.64e-98 | 296 |
| MS.gene43935.t1 | AT1G13490 | 44.103 | 390 | 182 | 9 | 1 | 381 | 1 | 363 | 5.14e-95 | 288 |
| MS.gene43935.t1 | AT1G13550 | 43.434 | 396 | 195 | 13 | 1 | 378 | 1 | 385 | 7.60e-93 | 283 |
| MS.gene43935.t1 | AT1G13500 | 44.304 | 395 | 197 | 12 | 1 | 381 | 1 | 386 | 1.59e-92 | 283 |
| MS.gene43935.t1 | AT1G61600 | 39.007 | 423 | 214 | 9 | 1 | 381 | 1 | 421 | 1.43e-90 | 279 |
Find 88 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | 5.4:-25457131 | None:intergenic |
| AACCTAACGCTTGGCTTAAT+TGG | 0.212270 | 5.4:-25458433 | None:intergenic |
| TTCAAGTTATCTTGTGATAT+TGG | 0.212889 | 5.4:+25457136 | MS.gene43935:CDS |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5.4:-25458548 | None:intergenic |
| AAAATTGAAAAGTTGAAATT+TGG | 0.220039 | 5.4:-25458482 | None:intergenic |
| GTAACAAATGTTGAAGAATT+TGG | 0.231968 | 5.4:+25458887 | MS.gene43935:CDS |
| CCTGGGTTATTGAGGGAAAA+AGG | 0.234439 | 5.4:+25458377 | MS.gene43935:CDS |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5.4:+25458562 | MS.gene43935:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5.4:+25458793 | MS.gene43935:CDS |
| GACAATGGTTGATTTAATAC+TGG | 0.344310 | 5.4:-25457299 | None:intergenic |
| GAGAAGAATGGATAAAAGTT+TGG | 0.346178 | 5.4:+25458967 | MS.gene43935:CDS |
| TTGGCTTAATTGGTAGTTGC+GGG | 0.349143 | 5.4:-25458423 | None:intergenic |
| TGAAGGAAAGGATGCTGTTT+GGG | 0.370832 | 5.4:+25458721 | MS.gene43935:CDS |
| TCAAAGGAAAATGAAAATAG+TGG | 0.372912 | 5.4:+25458647 | MS.gene43935:CDS |
| AAATGGGAACAAGAAAGATT+TGG | 0.385031 | 5.4:+25458833 | MS.gene43935:CDS |
| TTGAAGGAAAGGATGCTGTT+TGG | 0.397380 | 5.4:+25458720 | MS.gene43935:CDS |
| GAAAGATTTGGATGGAATGC+TGG | 0.400495 | 5.4:+25458845 | MS.gene43935:CDS |
| GCTCAAACTTACTCTTGCTT+TGG | 0.406381 | 5.4:+25457167 | MS.gene43935:CDS |
| TGATGTTAAACCAAGACCTT+TGG | 0.408050 | 5.4:+25458268 | MS.gene43935:CDS |
| CCTTTGAACTTGTACTAGCT+TGG | 0.411881 | 5.4:-25458205 | None:intergenic |
| TTGAAGGGCTCCAAAGGTCT+TGG | 0.418581 | 5.4:-25458278 | None:intergenic |
| AAGTTATTCATTGAGAAGAA+TGG | 0.420622 | 5.4:+25458955 | MS.gene43935:CDS |
| GCCCTTCAATGATTATCAAC+AGG | 0.423563 | 5.4:+25458292 | MS.gene43935:CDS |
| AGCATCCTTTCCTTCAACCT+TGG | 0.423840 | 5.4:-25458714 | None:intergenic |
| GCTTCAGATGGAATTCCTCC+TGG | 0.427749 | 5.4:+25458359 | MS.gene43935:CDS |
| AAGTTATTGAAGGAATGAAA+TGG | 0.430511 | 5.4:+25458816 | MS.gene43935:CDS |
| TGAACATAGCTTCTTCACTT+AGG | 0.441565 | 5.4:-25457274 | None:intergenic |
| ACAGAAGTTGCCAAGGTTGA+AGG | 0.444547 | 5.4:+25458704 | MS.gene43935:CDS |
| AGTTATTGAAGGAATGAAAT+GGG | 0.445708 | 5.4:+25458817 | MS.gene43935:CDS |
| GAACATAGCTTCTTCACTTA+GGG | 0.448913 | 5.4:-25457273 | None:intergenic |
| AGAAGGAAGGGAAAGAATCA+AGG | 0.451579 | 5.4:+25457344 | MS.gene43935:CDS |
| GAATTTGGCCCTGATGGTGG+TGG | 0.453647 | 5.4:-25457116 | None:intergenic |
| CTTTCAGACCCACCACCATC+AGG | 0.453725 | 5.4:+25457107 | MS.gene43935:CDS |
| GATGAAAATAGATTGCTTGA+TGG | 0.454252 | 5.4:+25458743 | MS.gene43935:CDS |
| GAATTCCTCCTGGGTTATTG+AGG | 0.466329 | 5.4:+25458369 | MS.gene43935:CDS |
| TTAACCATCGTTATTTCAGC+AGG | 0.467298 | 5.4:+25457242 | MS.gene43935:CDS |
| TTGAGTTTGGAAGTTATTGA+AGG | 0.477504 | 5.4:+25458806 | MS.gene43935:CDS |
| GATTGCTTGATGGAGTGTTA+TGG | 0.478512 | 5.4:+25458753 | MS.gene43935:CDS |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5.4:+25458782 | MS.gene43935:CDS |
| AACCTGTTGATAATCATTGA+AGG | 0.481565 | 5.4:-25458294 | None:intergenic |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.4:+25458548 | MS.gene43935:CDS |
| TAGTACAAGTTCAAAGGAAG+AGG | 0.503151 | 5.4:+25458211 | MS.gene43935:CDS |
| AATTCCTCCTGGGTTATTGA+GGG | 0.509022 | 5.4:+25458370 | MS.gene43935:CDS |
| ATTTGGATGGAATGCTGGGA+AGG | 0.512527 | 5.4:+25458850 | MS.gene43935:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.512950 | 5.4:+25457331 | MS.gene43935:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.514101 | 5.4:-25457115 | None:intergenic |
| AATTTGGTGGAACAAACATA+TGG | 0.517000 | 5.4:+25458903 | MS.gene43935:CDS |
| CCAAGCTAGTACAAGTTCAA+AGG | 0.520879 | 5.4:+25458205 | MS.gene43935:CDS |
| TGTTCTGAATCAGTGGTTGT+TGG | 0.524665 | 5.4:+25458512 | MS.gene43935:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.530706 | 5.4:+25458851 | MS.gene43935:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.530832 | 5.4:+25457327 | MS.gene43935:CDS |
| AAAGATTTGGATGGAATGCT+GGG | 0.532701 | 5.4:+25458846 | MS.gene43935:CDS |
| GAAAATGAAAATAGTGGAGA+AGG | 0.537296 | 5.4:+25458653 | MS.gene43935:CDS |
| GAAATTTAGTTGTTATGTGT+TGG | 0.537435 | 5.4:+25458928 | MS.gene43935:CDS |
| CACATCAAATTAAGAGCAAG+TGG | 0.537917 | 5.4:+25459014 | MS.gene43935:CDS |
| GAAATAATCAAGAAGAGTCA+TGG | 0.542478 | 5.4:+25458317 | MS.gene43935:CDS |
| TACCAATTAAGCCAAGCGTT+AGG | 0.542546 | 5.4:+25458431 | MS.gene43935:CDS |
| CATAGCTTCTTCACTTAGGG+TGG | 0.542657 | 5.4:-25457270 | None:intergenic |
| ATTTGGTAGCTTCGAACGCA+AGG | 0.544069 | 5.4:-25458465 | None:intergenic |
| CTTGGCTTAATTGGTAGTTG+CGG | 0.547379 | 5.4:-25458424 | None:intergenic |
| ACAAATGTTGAAGAATTTGG+TGG | 0.548037 | 5.4:+25458890 | MS.gene43935:CDS |
| GGTGGGTCTGAAAGAGCACC+AGG | 0.550062 | 5.4:-25457098 | None:intergenic |
| AGCTAACACTTGAGCAACGA+TGG | 0.552335 | 5.4:+25458612 | MS.gene43935:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | 5.4:-25457122 | None:intergenic |
| GAAGGAAGGGAAAGAATCAA+GGG | 0.557983 | 5.4:+25457345 | MS.gene43935:CDS |
| ACCTGTTGATAATCATTGAA+GGG | 0.560629 | 5.4:-25458293 | None:intergenic |
| TACTATGTTATAAGAAGGAA+GGG | 0.561528 | 5.4:+25457332 | MS.gene43935:CDS |
| CTTCAGATGGAATTCCTCCT+GGG | 0.571560 | 5.4:+25458360 | MS.gene43935:CDS |
| AATCATTTGAACCTAACGCT+TGG | 0.573053 | 5.4:-25458442 | None:intergenic |
| GCAAAATCTATCGCTTCAGA+TGG | 0.576413 | 5.4:+25458347 | MS.gene43935:CDS |
| GGGAACAAGAAAGATTTGGA+TGG | 0.577539 | 5.4:+25458837 | MS.gene43935:CDS |
| AGTTGCCAAGGTTGAAGGAA+AGG | 0.583011 | 5.4:+25458709 | MS.gene43935:CDS |
| TAATGATTGTTCTGAATCAG+TGG | 0.585316 | 5.4:+25458505 | MS.gene43935:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.4:+25458544 | MS.gene43935:CDS |
| AATGAAAATAGTGGAGAAGG+TGG | 0.590819 | 5.4:+25458656 | MS.gene43935:CDS |
| GTGCAAGAACAATAGAGTCA+AGG | 0.591442 | 5.4:+25457193 | MS.gene43935:CDS |
| TAATCATTGAAGGGCTCCAA+AGG | 0.594177 | 5.4:-25458284 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | 5.4:-25457119 | None:intergenic |
| AAGGTCTTGGTTTAACATCA+CGG | 0.612277 | 5.4:-25458265 | None:intergenic |
| GATTCAAACAGAAGTTGCCA+AGG | 0.618472 | 5.4:+25458697 | MS.gene43935:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.623216 | 5.4:+25458519 | MS.gene43935:CDS |
| TGGCTTAATTGGTAGTTGCG+GGG | 0.631094 | 5.4:-25458422 | None:intergenic |
| TTTCAGACCCACCACCATCA+GGG | 0.636827 | 5.4:+25457108 | MS.gene43935:CDS |
| TTCACCTGCTGAAATAACGA+TGG | 0.649669 | 5.4:-25457246 | None:intergenic |
| AAAACTACAACATAAACATG+TGG | 0.651413 | 5.4:-25458240 | None:intergenic |
| GCTAACACTTGAGCAACGAT+GGG | 0.652461 | 5.4:+25458613 | MS.gene43935:CDS |
| ACATCAAATTAAGAGCAAGT+GGG | 0.665734 | 5.4:+25459015 | MS.gene43935:CDS |
| TAGTAGCGATTAGAAGACAA+TGG | 0.682657 | 5.4:-25457314 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAATAAGTAATAG+TGG | + | chr5.4:25458143-25458162 | MS.gene43935:intron | 10.0% |
| !! | TTTAAACAAAATCAATTATA+AGG | + | chr5.4:25457726-25457745 | MS.gene43935:intron | 10.0% |
| !! | AAAATTGAAAAGTTGAAATT+TGG | - | chr5.4:25458485-25458504 | None:intergenic | 15.0% |
| !! | TCTTTCATTGTTAAAAATTA+AGG | - | chr5.4:25457533-25457552 | None:intergenic | 15.0% |
| !! | TTAAACATTAAAAACAATCA+TGG | - | chr5.4:25457711-25457730 | None:intergenic | 15.0% |
| !! | ACAAAATCAATTATAAGGTT+TGG | + | chr5.4:25457731-25457750 | MS.gene43935:intron | 20.0% |
| !! | TCATTGTTAAAAATTAAGGA+GGG | - | chr5.4:25457529-25457548 | None:intergenic | 20.0% |
| !! | TGAAATAGATGCTTAAATTT+AGG | - | chr5.4:25457907-25457926 | None:intergenic | 20.0% |
| !! | TTCATTGTTAAAAATTAAGG+AGG | - | chr5.4:25457530-25457549 | None:intergenic | 20.0% |
| !!! | TATAGTTTTTGTCAAAATTG+TGG | + | chr5.4:25458058-25458077 | MS.gene43935:intron | 20.0% |
| !!! | TTTTCCCGAAAATTAAATTT+GGG | + | chr5.4:25457567-25457586 | MS.gene43935:intron | 20.0% |
| !!! | TTTTTCCCGAAAATTAAATT+TGG | + | chr5.4:25457566-25457585 | MS.gene43935:intron | 20.0% |
| ! | AAAACTACAACATAAACATG+TGG | - | chr5.4:25458243-25458262 | None:intergenic | 25.0% |
| ! | AAGTTATTCATTGAGAAGAA+TGG | + | chr5.4:25458955-25458974 | MS.gene43935:CDS | 25.0% |
| ! | AAGTTATTGAAGGAATGAAA+TGG | + | chr5.4:25458816-25458835 | MS.gene43935:CDS | 25.0% |
| ! | ACATTGTCTCAATATATCAT+TGG | + | chr5.4:25457676-25457695 | MS.gene43935:intron | 25.0% |
| ! | AGTTATTGAAGGAATGAAAT+GGG | + | chr5.4:25458817-25458836 | MS.gene43935:CDS | 25.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5.4:25457134-25457153 | None:intergenic | 25.0% |
| ! | GAAATTTAGTTGTTATGTGT+TGG | + | chr5.4:25458928-25458947 | MS.gene43935:CDS | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5.4:25458562-25458581 | MS.gene43935:CDS | 25.0% |
| ! | GTAACAAATGTTGAAGAATT+TGG | + | chr5.4:25458887-25458906 | MS.gene43935:CDS | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5.4:25457332-25457351 | MS.gene43935:CDS | 25.0% |
| ! | TAGCTTGAAATGGAATTTAT+GGG | - | chr5.4:25457501-25457520 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAATGAAAATAG+TGG | + | chr5.4:25458647-25458666 | MS.gene43935:CDS | 25.0% |
| ! | TTTCCCGAAAATTAAATTTG+GGG | + | chr5.4:25457568-25457587 | MS.gene43935:intron | 25.0% |
| !! | AAACATGCGCTAAAATTTTA+AGG | + | chr5.4:25458118-25458137 | MS.gene43935:intron | 25.0% |
| !! | AATTATAAGGTTTGGTCTAA+TGG | + | chr5.4:25457739-25457758 | MS.gene43935:intron | 25.0% |
| !! | AGATGCTTAAATTTAGGATT+AGG | - | chr5.4:25457901-25457920 | None:intergenic | 25.0% |
| !! | ATGCTTAAATTTAGGATTAG+GGG | - | chr5.4:25457899-25457918 | None:intergenic | 25.0% |
| !! | ATGGTTAAATTTTTGTTCTG+AGG | - | chr5.4:25457230-25457249 | None:intergenic | 25.0% |
| !! | GATGCTTAAATTTAGGATTA+GGG | - | chr5.4:25457900-25457919 | None:intergenic | 25.0% |
| !! | TGGTTAAATTTTTGTTCTGA+GGG | - | chr5.4:25457229-25457248 | None:intergenic | 25.0% |
| !! | TTAGCTTGAAATGGAATTTA+TGG | - | chr5.4:25457502-25457521 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+TGG | + | chr5.4:25457136-25457155 | MS.gene43935:CDS | 25.0% |
| !!! | AATCCCCCAAATTTAATTTT+CGG | - | chr5.4:25457575-25457594 | None:intergenic | 25.0% |
| AAATGGGAACAAGAAAGATT+TGG | + | chr5.4:25458833-25458852 | MS.gene43935:CDS | 30.0% | |
| AAGCAAAGAAAACTATACGT+TGG | - | chr5.4:25457402-25457421 | None:intergenic | 30.0% | |
| ACAAATGTTGAAGAATTTGG+TGG | + | chr5.4:25458890-25458909 | MS.gene43935:CDS | 30.0% | |
| ACATCAAATTAAGAGCAAGT+GGG | + | chr5.4:25459015-25459034 | MS.gene43935:CDS | 30.0% | |
| AGCAAAGAAAACTATACGTT+GGG | - | chr5.4:25457401-25457420 | None:intergenic | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5.4:25457327-25457346 | MS.gene43935:CDS | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5.4:25457331-25457350 | MS.gene43935:CDS | 30.0% | |
| GAAATAATCAAGAAGAGTCA+TGG | + | chr5.4:25458317-25458336 | MS.gene43935:CDS | 30.0% | |
| GAGAAGAATGGATAAAAGTT+TGG | + | chr5.4:25458967-25458986 | MS.gene43935:CDS | 30.0% | |
| GATGAAAATAGATTGCTTGA+TGG | + | chr5.4:25458743-25458762 | MS.gene43935:CDS | 30.0% | |
| TTCCCGAAAATTAAATTTGG+GGG | + | chr5.4:25457569-25457588 | MS.gene43935:intron | 30.0% | |
| TTGAGTTTGGAAGTTATTGA+AGG | + | chr5.4:25458806-25458825 | MS.gene43935:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.4:25458544-25458563 | MS.gene43935:CDS | 30.0% | |
| ! | AATTTGGTGGAACAAACATA+TGG | + | chr5.4:25458903-25458922 | MS.gene43935:CDS | 30.0% |
| ! | GAAAATGAAAATAGTGGAGA+AGG | + | chr5.4:25458653-25458672 | MS.gene43935:CDS | 30.0% |
| ! | GACAATGGTTGATTTAATAC+TGG | - | chr5.4:25457302-25457321 | None:intergenic | 30.0% |
| ! | TAATGATTGTTCTGAATCAG+TGG | + | chr5.4:25458505-25458524 | MS.gene43935:CDS | 30.0% |
| ! | TTAAATTTAGGATTAGGGGA+AGG | - | chr5.4:25457895-25457914 | None:intergenic | 30.0% |
| !! | AACCTGTTGATAATCATTGA+AGG | - | chr5.4:25458297-25458316 | None:intergenic | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5.4:25458296-25458315 | None:intergenic | 30.0% |
| !! | ATCCCCCAAATTTAATTTTC+GGG | - | chr5.4:25457574-25457593 | None:intergenic | 30.0% |
| !!! | AAATTTTTGTTCTGAGGGAA+AGG | - | chr5.4:25457224-25457243 | None:intergenic | 30.0% |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5.4:25458631-25458650 | MS.gene43935:CDS | 30.0% |
| AAAGATTTGGATGGAATGCT+GGG | + | chr5.4:25458846-25458865 | MS.gene43935:CDS | 35.0% | |
| AAGGTCTTGGTTTAACATCA+CGG | - | chr5.4:25458268-25458287 | None:intergenic | 35.0% | |
| AATCATTTGAACCTAACGCT+TGG | - | chr5.4:25458445-25458464 | None:intergenic | 35.0% | |
| AATGGTAAAAAGACAGGCTT+TGG | + | chr5.4:25457757-25457776 | MS.gene43935:intron | 35.0% | |
| ACACTAGCATGGTTTAAACT+CGG | - | chr5.4:25457794-25457813 | None:intergenic | 35.0% | |
| CACATCAAATTAAGAGCAAG+TGG | + | chr5.4:25459014-25459033 | MS.gene43935:CDS | 35.0% | |
| CCAAAGCACATAATATTTCC+TGG | - | chr5.4:25457863-25457882 | None:intergenic | 35.0% | |
| CCAGGAAATATTATGTGCTT+TGG | + | chr5.4:25457860-25457879 | MS.gene43935:intron | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.4:25458548-25458567 | MS.gene43935:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.4:25458551-25458570 | None:intergenic | 35.0% | |
| CGATGAGTTTGGAAAAAGAA+AGG | + | chr5.4:25458006-25458025 | MS.gene43935:intron | 35.0% | |
| GAACATAGCTTCTTCACTTA+GGG | - | chr5.4:25457276-25457295 | None:intergenic | 35.0% | |
| TAGTACAAGTTCAAAGGAAG+AGG | + | chr5.4:25458211-25458230 | MS.gene43935:CDS | 35.0% | |
| TAGTAGCGATTAGAAGACAA+TGG | - | chr5.4:25457317-25457336 | None:intergenic | 35.0% | |
| TCCATGTACAAAAAGAATCC+TGG | + | chr5.4:25457080-25457099 | MS.gene43935:CDS | 35.0% | |
| TGAACATAGCTTCTTCACTT+AGG | - | chr5.4:25457277-25457296 | None:intergenic | 35.0% | |
| TGATGTTAAACCAAGACCTT+TGG | + | chr5.4:25458268-25458287 | MS.gene43935:CDS | 35.0% | |
| TGGTCTAATGGTAAAAAGAC+AGG | + | chr5.4:25457751-25457770 | MS.gene43935:intron | 35.0% | |
| ! | AATGAAAATAGTGGAGAAGG+TGG | + | chr5.4:25458656-25458675 | MS.gene43935:CDS | 35.0% |
| ! | ACCAGGATTCTTTTTGTACA+TGG | - | chr5.4:25457084-25457103 | None:intergenic | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5.4:25458782-25458801 | MS.gene43935:CDS | 35.0% |
| ! | GAGGGTTAATTAGCTTGAAA+TGG | - | chr5.4:25457511-25457530 | None:intergenic | 35.0% |
| ! | TTAACCATCGTTATTTCAGC+AGG | + | chr5.4:25457242-25457261 | MS.gene43935:CDS | 35.0% |
| !! | ATTTTAGCGCATGTTTGAGT+TGG | - | chr5.4:25458114-25458133 | None:intergenic | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.4:25458793-25458812 | MS.gene43935:CDS | 35.0% |
| !! | TTTTAGCGCATGTTTGAGTT+GGG | - | chr5.4:25458113-25458132 | None:intergenic | 35.0% |
| !!! | AACCATGCTAGTGTTTTTTG+AGG | + | chr5.4:25457800-25457819 | MS.gene43935:intron | 35.0% |
| !!! | GTTTTGATTGTCGATGAGTT+TGG | + | chr5.4:25457995-25458014 | MS.gene43935:intron | 35.0% |
| AACCTAACGCTTGGCTTAAT+TGG | - | chr5.4:25458436-25458455 | None:intergenic | 40.0% | |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.4:25458519-25458538 | MS.gene43935:CDS | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | + | chr5.4:25458370-25458389 | MS.gene43935:CDS | 40.0% | |
| AGAAGGAAGGGAAAGAATCA+AGG | + | chr5.4:25457344-25457363 | MS.gene43935:CDS | 40.0% | |
| AGACAATGTTTCGATGATCG+TGG | - | chr5.4:25457665-25457684 | None:intergenic | 40.0% | |
| AGCCTCAAAAAACACTAGCA+TGG | - | chr5.4:25457805-25457824 | None:intergenic | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | + | chr5.4:25458205-25458224 | MS.gene43935:CDS | 40.0% | |
| CCTTTGAACTTGTACTAGCT+TGG | - | chr5.4:25458208-25458227 | None:intergenic | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | + | chr5.4:25458378-25458397 | MS.gene43935:CDS | 40.0% | |
| GAAAGATTTGGATGGAATGC+TGG | + | chr5.4:25458845-25458864 | MS.gene43935:CDS | 40.0% | |
| GAAGGAAGGGAAAGAATCAA+GGG | + | chr5.4:25457345-25457364 | MS.gene43935:CDS | 40.0% | |
| GATTCAAACAGAAGTTGCCA+AGG | + | chr5.4:25458697-25458716 | MS.gene43935:CDS | 40.0% | |
| GCAAAATCTATCGCTTCAGA+TGG | + | chr5.4:25458347-25458366 | MS.gene43935:CDS | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5.4:25458292-25458311 | MS.gene43935:CDS | 40.0% | |
| GCTCAAACTTACTCTTGCTT+TGG | + | chr5.4:25457167-25457186 | MS.gene43935:CDS | 40.0% | |
| GGGAACAAGAAAGATTTGGA+TGG | + | chr5.4:25458837-25458856 | MS.gene43935:CDS | 40.0% | |
| GGTTCAGTGAATACTCACAA+AGG | - | chr5.4:25457842-25457861 | None:intergenic | 40.0% | |
| GTGCAAGAACAATAGAGTCA+AGG | + | chr5.4:25457193-25457212 | MS.gene43935:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5.4:25457125-25457144 | None:intergenic | 40.0% | |
| TAATCATTGAAGGGCTCCAA+AGG | - | chr5.4:25458287-25458306 | None:intergenic | 40.0% | |
| TACCAATTAAGCCAAGCGTT+AGG | + | chr5.4:25458431-25458450 | MS.gene43935:CDS | 40.0% | |
| TTCACCTGCTGAAATAACGA+TGG | - | chr5.4:25457249-25457268 | None:intergenic | 40.0% | |
| TTGAAGGAAAGGATGCTGTT+TGG | + | chr5.4:25458720-25458739 | MS.gene43935:CDS | 40.0% | |
| TTGTGAGTATTCACTGAACC+AGG | + | chr5.4:25457842-25457861 | MS.gene43935:intron | 40.0% | |
| ! | CTTGGCTTAATTGGTAGTTG+CGG | - | chr5.4:25458427-25458446 | None:intergenic | 40.0% |
| ! | GAGATTGGTTGAGTCATGAT+AGG | - | chr5.4:25458087-25458106 | None:intergenic | 40.0% |
| ! | GATTGCTTGATGGAGTGTTA+TGG | + | chr5.4:25458753-25458772 | MS.gene43935:CDS | 40.0% |
| ! | TGAAGGAAAGGATGCTGTTT+GGG | + | chr5.4:25458721-25458740 | MS.gene43935:CDS | 40.0% |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | + | chr5.4:25458512-25458531 | MS.gene43935:CDS | 40.0% |
| ! | TTGGCTTAATTGGTAGTTGC+GGG | - | chr5.4:25458426-25458445 | None:intergenic | 40.0% |
| !!! | ATGCTAGTGTTTTTTGAGGC+TGG | + | chr5.4:25457804-25457823 | MS.gene43935:intron | 40.0% |
| ACAGAAGTTGCCAAGGTTGA+AGG | + | chr5.4:25458704-25458723 | MS.gene43935:CDS | 45.0% | |
| AGCATCCTTTCCTTCAACCT+TGG | - | chr5.4:25458717-25458736 | None:intergenic | 45.0% | |
| AGCTAACACTTGAGCAACGA+TGG | + | chr5.4:25458612-25458631 | MS.gene43935:CDS | 45.0% | |
| AGTTGCCAAGGTTGAAGGAA+AGG | + | chr5.4:25458709-25458728 | MS.gene43935:CDS | 45.0% | |
| ATTTGGATGGAATGCTGGGA+AGG | + | chr5.4:25458850-25458869 | MS.gene43935:CDS | 45.0% | |
| CATAGCTTCTTCACTTAGGG+TGG | - | chr5.4:25457273-25457292 | None:intergenic | 45.0% | |
| CCTGGGTTATTGAGGGAAAA+AGG | + | chr5.4:25458377-25458396 | MS.gene43935:CDS | 45.0% | |
| CTTCAGATGGAATTCCTCCT+GGG | + | chr5.4:25458360-25458379 | MS.gene43935:CDS | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | + | chr5.4:25458369-25458388 | MS.gene43935:CDS | 45.0% | |
| GCTAACACTTGAGCAACGAT+GGG | + | chr5.4:25458613-25458632 | MS.gene43935:CDS | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | + | chr5.4:25458381-25458400 | MS.gene43935:CDS | 45.0% | |
| TCGATGATCGTGGTTCAACT+AGG | - | chr5.4:25457655-25457674 | None:intergenic | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5.4:25458851-25458870 | MS.gene43935:CDS | 45.0% | |
| ! | ATTTGGTAGCTTCGAACGCA+AGG | - | chr5.4:25458468-25458487 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | - | chr5.4:25458380-25458399 | None:intergenic | 45.0% |
| ! | TGGCTTAATTGGTAGTTGCG+GGG | - | chr5.4:25458425-25458444 | None:intergenic | 45.0% |
| ! | TTTTCCCTCAATAACCCAGG+AGG | - | chr5.4:25458377-25458396 | None:intergenic | 45.0% |
| !! | AAGACAGGCTTTGGACTTAG+AGG | + | chr5.4:25457766-25457785 | MS.gene43935:intron | 45.0% |
| !! | GTTTGAGTTGGGTGTGAGAT+TGG | - | chr5.4:25458102-25458121 | None:intergenic | 45.0% |
| !! | TTAAATAAATTGAATATTAT+AGG | + | chr5.4:25457448-25457467 | MS.gene43935:intron | 5.0% |
| CTTGAATTTGGCCCTGATGG+TGG | - | chr5.4:25457122-25457141 | None:intergenic | 50.0% | |
| GCTTCAGATGGAATTCCTCC+TGG | + | chr5.4:25458359-25458378 | MS.gene43935:CDS | 50.0% | |
| TTGAAGGGCTCCAAAGGTCT+TGG | - | chr5.4:25458281-25458300 | None:intergenic | 50.0% | |
| TTTCAGACCCACCACCATCA+GGG | + | chr5.4:25457108-25457127 | MS.gene43935:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5.4:25457118-25457137 | None:intergenic | 50.0% |
| CTTTCAGACCCACCACCATC+AGG | + | chr5.4:25457107-25457126 | MS.gene43935:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5.4:25457119-25457138 | None:intergenic | 55.0% |
| !! | GGTGGGTCTGAAAGAGCACC+AGG | - | chr5.4:25457101-25457120 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 25457059 | 25459042 | 25457059 | ID=MS.gene43935 |
| chr5.4 | mRNA | 25457059 | 25459042 | 25457059 | ID=MS.gene43935.t1;Parent=MS.gene43935 |
| chr5.4 | exon | 25457059 | 25457366 | 25457059 | ID=MS.gene43935.t1.exon1;Parent=MS.gene43935.t1 |
| chr5.4 | CDS | 25457059 | 25457366 | 25457059 | ID=cds.MS.gene43935.t1;Parent=MS.gene43935.t1 |
| chr5.4 | exon | 25458205 | 25459042 | 25458205 | ID=MS.gene43935.t1.exon2;Parent=MS.gene43935.t1 |
| chr5.4 | CDS | 25458205 | 25459042 | 25458205 | ID=cds.MS.gene43935.t1;Parent=MS.gene43935.t1 |
| Gene Sequence |
| Protein sequence |
