Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78745.t1 | XP_013452693.1 | 98 | 399 | 8 | 0 | 1 | 399 | 1 | 399 | 8.00E-231 | 809.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78745.t1 | A0A072UB96 | 98.0 | 399 | 8 | 0 | 1 | 399 | 1 | 399 | 5.8e-231 | 809.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051959 | MS.gene78745 | 0.843424 | 1.41E-58 | -1.69E-46 |
| MS.gene051960 | MS.gene78745 | 0.838044 | 3.63E-57 | -1.69E-46 |
| MS.gene052053 | MS.gene78745 | 0.800671 | 1.29E-48 | -1.69E-46 |
| MS.gene052091 | MS.gene78745 | 0.813967 | 1.96E-51 | -1.69E-46 |
| MS.gene053932 | MS.gene78745 | 0.882518 | 9.74E-71 | -1.69E-46 |
| MS.gene055549 | MS.gene78745 | 0.820438 | 6.86E-53 | -1.69E-46 |
| MS.gene055550 | MS.gene78745 | 0.812183 | 4.82E-51 | -1.69E-46 |
| MS.gene055551 | MS.gene78745 | 0.8164 | 5.64E-52 | -1.69E-46 |
| MS.gene057001 | MS.gene78745 | 0.823823 | 1.13E-53 | -1.69E-46 |
| MS.gene057093 | MS.gene78745 | 0.818355 | 2.05E-52 | -1.69E-46 |
| MS.gene060446 | MS.gene78745 | 0.812608 | 3.89E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027536 | MS.gene78745 | PPI |
| MS.gene027543 | MS.gene78745 | PPI |
| MS.gene45117 | MS.gene78745 | PPI |
| MS.gene027534 | MS.gene78745 | PPI |
| MS.gene027537 | MS.gene78745 | PPI |
| MS.gene68298 | MS.gene78745 | PPI |
| MS.gene68295 | MS.gene78745 | PPI |
| MS.gene045965 | MS.gene78745 | PPI |
| MS.gene43935 | MS.gene78745 | PPI |
| MS.gene45114 | MS.gene78745 | PPI |
| MS.gene78745 | MS.gene042700 | PPI |
| MS.gene027544 | MS.gene78745 | PPI |
| MS.gene45119 | MS.gene78745 | PPI |
| MS.gene45120 | MS.gene78745 | PPI |
| MS.gene45116 | MS.gene78745 | PPI |
| MS.gene68293 | MS.gene78745 | PPI |
| MS.gene027539 | MS.gene78745 | PPI |
| MS.gene027535 | MS.gene78745 | PPI |
| MS.gene45118 | MS.gene78745 | PPI |
| MS.gene68296 | MS.gene78745 | PPI |
| MS.gene68292 | MS.gene78745 | PPI |
| MS.gene68297 | MS.gene78745 | PPI |
| MS.gene027538 | MS.gene78745 | PPI |
| MS.gene45115 | MS.gene78745 | PPI |
| MS.gene042700 | MS.gene78745 | PPI |
| MS.gene053932 | MS.gene78745 | PPI |
| MS.gene027540 | MS.gene78745 | PPI |
| MS.gene43936 | MS.gene78745 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78745.t1 | MTR_6g472110 | 97.995 | 399 | 8 | 0 | 1 | 399 | 1 | 399 | 0.0 | 816 |
| MS.gene78745.t1 | MTR_5g035690 | 50.493 | 406 | 174 | 12 | 1 | 399 | 1 | 386 | 3.05e-129 | 377 |
| MS.gene78745.t1 | MTR_5g035665 | 50.500 | 400 | 176 | 9 | 1 | 399 | 1 | 379 | 1.59e-126 | 370 |
| MS.gene78745.t1 | MTR_5g035750 | 49.010 | 404 | 184 | 10 | 1 | 399 | 1 | 387 | 1.31e-123 | 363 |
| MS.gene78745.t1 | MTR_5g035760 | 49.626 | 401 | 179 | 11 | 1 | 399 | 1 | 380 | 5.42e-120 | 353 |
| MS.gene78745.t1 | MTR_5g035670 | 48.250 | 400 | 187 | 8 | 1 | 399 | 1 | 381 | 9.68e-119 | 350 |
| MS.gene78745.t1 | MTR_6g016660 | 42.298 | 409 | 215 | 10 | 1 | 399 | 1 | 398 | 1.49e-101 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78745.t1 | AT1G13480 | 43.532 | 402 | 209 | 9 | 1 | 399 | 1 | 387 | 4.00e-103 | 310 |
| MS.gene78745.t1 | AT1G13520 | 44.554 | 404 | 202 | 10 | 1 | 399 | 1 | 387 | 7.84e-103 | 310 |
| MS.gene78745.t1 | AT1G13530 | 45.050 | 404 | 198 | 10 | 1 | 399 | 1 | 385 | 2.85e-98 | 298 |
| MS.gene78745.t1 | AT1G13500 | 45.588 | 408 | 191 | 12 | 1 | 399 | 1 | 386 | 1.13e-93 | 286 |
| MS.gene78745.t1 | AT1G13490 | 43.424 | 403 | 203 | 9 | 1 | 399 | 1 | 382 | 1.04e-92 | 284 |
| MS.gene78745.t1 | AT1G13470 | 44.665 | 403 | 194 | 14 | 1 | 399 | 1 | 378 | 6.72e-91 | 279 |
| MS.gene78745.t1 | AT1G13490 | 42.537 | 402 | 189 | 10 | 1 | 399 | 1 | 363 | 4.99e-87 | 268 |
| MS.gene78745.t1 | AT1G13540 | 40.931 | 408 | 205 | 14 | 1 | 399 | 1 | 381 | 5.05e-86 | 266 |
| MS.gene78745.t1 | AT1G61600 | 38.605 | 430 | 224 | 11 | 1 | 399 | 1 | 421 | 1.41e-83 | 261 |
| MS.gene78745.t1 | AT1G13510 | 42.015 | 407 | 201 | 15 | 1 | 399 | 1 | 380 | 6.05e-83 | 258 |
| MS.gene78745.t1 | AT1G13550 | 39.356 | 404 | 218 | 9 | 1 | 396 | 1 | 385 | 4.35e-78 | 246 |
Find 90 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACCAAAACACCAGAATT+AGG | 0.174233 | 5.1:+41901726 | None:intergenic |
| AGAATTTGAAGGGACTAATA+AGG | 0.248217 | 5.1:-41900103 | MS.gene78745:CDS |
| TGATAATGATGATGGTAAAA+AGG | 0.249854 | 5.1:-41900370 | MS.gene78745:CDS |
| TTGAAACCAACATCTTGTTT+TGG | 0.266282 | 5.1:-41901690 | MS.gene78745:CDS |
| AGGCCCTAATTCTGGTGTTT+TGG | 0.301149 | 5.1:-41901730 | MS.gene78745:CDS |
| CCAAGACTTGAATCACTTGA+TGG | 0.321076 | 5.1:+41900609 | None:intergenic |
| GCTATGGTGAAATCGAATTC+TGG | 0.330908 | 5.1:+41900546 | None:intergenic |
| CCACCAGAAGGCCCTAATTC+TGG | 0.339823 | 5.1:-41901738 | MS.gene78745:CDS |
| CTGATATCTAAAGGATGAAT+TGG | 0.361943 | 5.1:+41900768 | None:intergenic |
| ACACCAGAATTAGGGCCTTC+TGG | 0.363127 | 5.1:+41901735 | None:intergenic |
| AGATTACACTAGAGCAGAAA+TGG | 0.366742 | 5.1:-41900410 | MS.gene78745:CDS |
| CAGGAGAGGGTTGGATGGCT+TGG | 0.376011 | 5.1:-41900162 | MS.gene78745:CDS |
| GGGAGAGTACCATGAAGTTA+AGG | 0.382423 | 5.1:-41901664 | MS.gene78745:CDS |
| GAACAGTGTGGGTTTGAGTA+TGG | 0.387431 | 5.1:-41900211 | MS.gene78745:CDS |
| CCATCAAGTGATTCAAGTCT+TGG | 0.389444 | 5.1:-41900609 | MS.gene78745:CDS |
| CCCTTCATGTTTATCAAAGA+AGG | 0.391686 | 5.1:-41900480 | MS.gene78745:CDS |
| AAAGTGTTGTTGTGGGAAAA+TGG | 0.398385 | 5.1:-41900509 | MS.gene78745:CDS |
| GGAGAGTACCATGAAGTTAA+GGG | 0.402330 | 5.1:-41901663 | MS.gene78745:CDS |
| TACTATGTGATACATCTTCA+TGG | 0.407082 | 5.1:-41901513 | MS.gene78745:CDS |
| ATCATCAGTTAAGGAGCAAA+TGG | 0.407106 | 5.1:-41899987 | MS.gene78745:CDS |
| GTAGAAGCAAAGTTACATTA+AGG | 0.416879 | 5.1:-41900713 | MS.gene78745:CDS |
| AGATATCAGTGACAAATATC+AGG | 0.417583 | 5.1:-41900754 | MS.gene78745:CDS |
| TTACCAAAACACCAGAATTA+GGG | 0.422217 | 5.1:+41901727 | None:intergenic |
| AAAGAAGTGGTTGTAATTGC+TGG | 0.422244 | 5.1:-41900315 | MS.gene78745:CDS |
| TGAGAGAATGAAGTGGGAGC+AGG | 0.430736 | 5.1:-41900181 | MS.gene78745:CDS |
| GCTAAATCTGTTGCTGAAGA+TGG | 0.430828 | 5.1:-41900678 | MS.gene78745:CDS |
| GGAATTTCAAGTTAAGAAAG+TGG | 0.435170 | 5.1:-41900127 | MS.gene78745:CDS |
| TCAAACACCATCATCAGTTA+AGG | 0.444565 | 5.1:-41899996 | MS.gene78745:CDS |
| AAGGCAAACCCTTAACTTCA+TGG | 0.449187 | 5.1:+41901655 | None:intergenic |
| AAGAAAGTGGAAGAATTTGA+AGG | 0.451778 | 5.1:-41900114 | MS.gene78745:CDS |
| GAATGAAGTGGGAGCAGGAG+AGG | 0.455395 | 5.1:-41900176 | MS.gene78745:CDS |
| TTTAATAGTATCAATAATGT+TGG | 0.466830 | 5.1:-41900240 | MS.gene78745:CDS |
| GACAATGGCTGATTAAGAAC+TGG | 0.473764 | 5.1:+41901546 | None:intergenic |
| ATTTGCTCCTTAACTGATGA+TGG | 0.474106 | 5.1:+41899989 | None:intergenic |
| AATGAAGTGGGAGCAGGAGA+GGG | 0.474655 | 5.1:-41900175 | MS.gene78745:CDS |
| GAAATCGAATTCTGGTTTCC+CGG | 0.474718 | 5.1:+41900554 | None:intergenic |
| GACTTCTTGTACAAAGAAAG+AGG | 0.484167 | 5.1:+41901783 | None:intergenic |
| GAATTTGAAGGGACTAATAA+GGG | 0.485288 | 5.1:-41900102 | MS.gene78745:CDS |
| GAGAGGGTTGGATGGCTTGG+TGG | 0.489813 | 5.1:-41900159 | MS.gene78745:CDS |
| TGCTGGGTGGGAAGCTATGA+TGG | 0.490086 | 5.1:-41900298 | MS.gene78745:CDS |
| TCAAGTCTTGGAGAAGCATC+AGG | 0.497137 | 5.1:-41900597 | MS.gene78745:CDS |
| TCCTTCTTTGATAAACATGA+AGG | 0.498261 | 5.1:+41900479 | None:intergenic |
| TTCTGAACATCTGTTTGCTA+TGG | 0.504829 | 5.1:+41900530 | None:intergenic |
| ATGTATCACATAGTATTGAT+TGG | 0.509699 | 5.1:+41901521 | None:intergenic |
| TTTGTTATAAAGAGATTGGA+TGG | 0.511821 | 5.1:-41900042 | MS.gene78745:CDS |
| CATCTTCATGGCAAGAAAAG+AGG | 0.516256 | 5.1:-41901501 | MS.gene78745:CDS |
| GTAGATGATTCCCTCCGTGC+CGG | 0.518251 | 5.1:-41900573 | MS.gene78745:CDS |
| AAGTGGGAGCAGGAGAGGGT+TGG | 0.525230 | 5.1:-41900171 | MS.gene78745:CDS |
| TAGATGATTCCCTCCGTGCC+GGG | 0.526204 | 5.1:-41900572 | MS.gene78745:CDS |
| CTGATTAAGAACTGGAATGA+AGG | 0.530740 | 5.1:+41901554 | None:intergenic |
| TTCTGGTTTCCCGGCACGGA+GGG | 0.530934 | 5.1:+41900563 | None:intergenic |
| GAATTAGGGCCTTCTGGTGG+AGG | 0.531123 | 5.1:+41901741 | None:intergenic |
| CGAATTCTGGTTTCCCGGCA+CGG | 0.531178 | 5.1:+41900559 | None:intergenic |
| ATGGCTTGGTGGGAAAGAAA+AGG | 0.534199 | 5.1:-41900148 | MS.gene78745:CDS |
| AGCTATGATGGATAATAAGA+TGG | 0.539308 | 5.1:-41900286 | MS.gene78745:CDS |
| TCATCAGTTAAGGAGCAAAT+GGG | 0.542302 | 5.1:-41899986 | MS.gene78745:CDS |
| TATTTGTCACTGATATCTAA+AGG | 0.544278 | 5.1:+41900759 | None:intergenic |
| AGAGGGTTGGATGGCTTGGT+GGG | 0.548797 | 5.1:-41900158 | MS.gene78745:CDS |
| CCCAACCCAAAACAAGATGT+TGG | 0.552661 | 5.1:+41901684 | None:intergenic |
| GATTACACTAGAGCAGAAAT+GGG | 0.553713 | 5.1:-41900409 | MS.gene78745:CDS |
| TTTGTACAAGAAGTCTGAAG+AGG | 0.555051 | 5.1:-41901775 | MS.gene78745:CDS |
| GGGAGCAGGAGAGGGTTGGA+TGG | 0.555243 | 5.1:-41900167 | MS.gene78745:CDS |
| GTTGGAGAAAAGAACAGTGT+GGG | 0.558075 | 5.1:-41900222 | MS.gene78745:CDS |
| CTGATCTATAAAACAACTCA+AGG | 0.565365 | 5.1:+41901616 | None:intergenic |
| ATCTTCATGGCAAGAAAAGA+GGG | 0.569344 | 5.1:-41901500 | MS.gene78745:intron |
| AGTGGTTGTAATTGCTGGGT+GGG | 0.569655 | 5.1:-41900310 | MS.gene78745:CDS |
| TTGAAGGGACTAATAAGGGA+TGG | 0.569939 | 5.1:-41900098 | MS.gene78745:CDS |
| TGTTCAGAAAGTGTTGTTGT+GGG | 0.572278 | 5.1:-41900516 | MS.gene78745:CDS |
| AGCAAAGTTACATTAAGGAG+TGG | 0.577098 | 5.1:-41900708 | MS.gene78745:CDS |
| AAAATTTGGATGTTATGTGT+TGG | 0.578946 | 5.1:-41900073 | MS.gene78745:CDS |
| AGAAAGTGGAAGAATTTGAA+GGG | 0.580351 | 5.1:-41900113 | MS.gene78745:CDS |
| CCTTCTTTGATAAACATGAA+GGG | 0.590946 | 5.1:+41900480 | None:intergenic |
| CTGAAGATGGATACCCTCCA+AGG | 0.601083 | 5.1:-41900665 | MS.gene78745:CDS |
| TATCACATAGTATTGATTGG+AGG | 0.603064 | 5.1:+41901524 | None:intergenic |
| CAATAGTTGAGAGAATGAAG+TGG | 0.612002 | 5.1:-41900188 | MS.gene78745:CDS |
| ATGTTCAGAAAGTGTTGTTG+TGG | 0.614049 | 5.1:-41900517 | MS.gene78745:CDS |
| GGAAGCATACAATAACTCAA+AGG | 0.617419 | 5.1:-41900838 | MS.gene78745:CDS |
| CTCTCATTACCTCCACCAGA+AGG | 0.619265 | 5.1:-41901750 | MS.gene78745:CDS |
| AATAGTTGAGAGAATGAAGT+GGG | 0.629735 | 5.1:-41900187 | MS.gene78745:CDS |
| TGTTGGAGAAAAGAACAGTG+TGG | 0.630693 | 5.1:-41900223 | MS.gene78745:CDS |
| AAGAAGTGGTTGTAATTGCT+GGG | 0.631620 | 5.1:-41900314 | MS.gene78745:CDS |
| TATAGAATATGTATGTGACT+AGG | 0.634027 | 5.1:-41901806 | None:intergenic |
| TAACTCAAAGGAGGAAGACG+TGG | 0.642483 | 5.1:-41900826 | MS.gene78745:CDS |
| AGCATACAATAACTCAAAGG+AGG | 0.645051 | 5.1:-41900835 | MS.gene78745:CDS |
| TAGTATTGATTGGAGGACAA+TGG | 0.649023 | 5.1:+41901531 | None:intergenic |
| CCAGAATTAGGGCCTTCTGG+TGG | 0.656141 | 5.1:+41901738 | None:intergenic |
| AATGTAACTTTGCTTCTACG+AGG | 0.675300 | 5.1:+41900717 | None:intergenic |
| AAGTGGTTGTAATTGCTGGG+TGG | 0.699538 | 5.1:-41900311 | MS.gene78745:CDS |
| ATTCTGGTTTCCCGGCACGG+AGG | 0.710825 | 5.1:+41900562 | None:intergenic |
| ATGATGGTGTTTGAAAGCAT+AGG | 0.759923 | 5.1:+41900005 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATAATTTCTTAACT+TGG | - | chr5.1:41900320-41900339 | MS.gene78745:CDS | 10.0% |
| !! | TCATGTAAAAAATTAAAAAT+TGG | + | chr5.1:41900859-41900878 | None:intergenic | 10.0% |
| !! | TTTAATAGTATCAATAATGT+TGG | - | chr5.1:41901539-41901558 | MS.gene78745:CDS | 15.0% |
| !! | AGTATTATACTGATGTAATT+TGG | - | chr5.1:41900904-41900923 | MS.gene78745:intron | 20.0% |
| !!! | AATTAAAAATTGGTTCAACA+CGG | + | chr5.1:41900849-41900868 | None:intergenic | 20.0% |
| !!! | GACATTAATGTATTTTGATA+AGG | - | chr5.1:41900461-41900480 | MS.gene78745:CDS | 20.0% |
| !!! | TAAATTTTTCGTCTGTTATT+TGG | + | chr5.1:41900531-41900550 | None:intergenic | 20.0% |
| ! | AAAATTTGGATGTTATGTGT+TGG | - | chr5.1:41901706-41901725 | MS.gene78745:CDS | 25.0% |
| ! | AATAAGGGATGGAAAAAATT+TGG | - | chr5.1:41901692-41901711 | MS.gene78745:CDS | 25.0% |
| ! | TATTTGTCACTGATATCTAA+AGG | + | chr5.1:41901023-41901042 | None:intergenic | 25.0% |
| !! | TTTGTTATAAAGAGATTGGA+TGG | - | chr5.1:41901737-41901756 | MS.gene78745:CDS | 25.0% |
| !!! | AATTTGGTTTTTCTTCTGTA+GGG | - | chr5.1:41900920-41900939 | MS.gene78745:intron | 25.0% |
| !!! | ATGTATCACATAGTATTGAT+TGG | + | chr5.1:41900261-41900280 | None:intergenic | 25.0% |
| !!! | GACTTTTGTTATAAAGAGAT+TGG | - | chr5.1:41901733-41901752 | MS.gene78745:CDS | 25.0% |
| !!! | GATAATGATGATGGTAAAAA+GGG | - | chr5.1:41901410-41901429 | MS.gene78745:intron | 25.0% |
| !!! | TAATTTGGTTTTTCTTCTGT+AGG | - | chr5.1:41900919-41900938 | MS.gene78745:intron | 25.0% |
| !!! | TGATAATGATGATGGTAAAA+AGG | - | chr5.1:41901409-41901428 | MS.gene78745:intron | 25.0% |
| !!! | TTTTCATGTGATAATGATGA+TGG | - | chr5.1:41901401-41901420 | MS.gene78745:intron | 25.0% |
| AAGAAAGTGGAAGAATTTGA+AGG | - | chr5.1:41901665-41901684 | MS.gene78745:CDS | 30.0% | |
| AATAGTTGAGAGAATGAAGT+GGG | - | chr5.1:41901592-41901611 | MS.gene78745:CDS | 30.0% | |
| ACATTGAATTTCGATGACTT+TGG | - | chr5.1:41900437-41900456 | MS.gene78745:CDS | 30.0% | |
| AGAAAGTGGAAGAATTTGAA+GGG | - | chr5.1:41901666-41901685 | MS.gene78745:CDS | 30.0% | |
| AGAATTTGAAGGGACTAATA+AGG | - | chr5.1:41901676-41901695 | MS.gene78745:CDS | 30.0% | |
| AGATATCAGTGACAAATATC+AGG | - | chr5.1:41901025-41901044 | MS.gene78745:intron | 30.0% | |
| ATGTCAGTTATATAGTACCA+CGG | - | chr5.1:41900379-41900398 | MS.gene78745:CDS | 30.0% | |
| ATTACCAAAACACCAGAATT+AGG | + | chr5.1:41900056-41900075 | None:intergenic | 30.0% | |
| CCTTCTTTGATAAACATGAA+GGG | + | chr5.1:41901302-41901321 | None:intergenic | 30.0% | |
| CTGATATCTAAAGGATGAAT+TGG | + | chr5.1:41901014-41901033 | None:intergenic | 30.0% | |
| CTGATCTATAAAACAACTCA+AGG | + | chr5.1:41900166-41900185 | None:intergenic | 30.0% | |
| GAATTTGAAGGGACTAATAA+GGG | - | chr5.1:41901677-41901696 | MS.gene78745:CDS | 30.0% | |
| GGTACTATATAACTGACATT+TGG | + | chr5.1:41900378-41900397 | None:intergenic | 30.0% | |
| GTAGAAGCAAAGTTACATTA+AGG | - | chr5.1:41901066-41901085 | MS.gene78745:intron | 30.0% | |
| GTTAGATTTGAATACAGGTT+GGG | - | chr5.1:41900764-41900783 | MS.gene78745:CDS | 30.0% | |
| TACTATGTGATACATCTTCA+TGG | - | chr5.1:41900266-41900285 | MS.gene78745:CDS | 30.0% | |
| TCCTTCTTTGATAAACATGA+AGG | + | chr5.1:41901303-41901322 | None:intergenic | 30.0% | |
| TGTTAGATTTGAATACAGGT+TGG | - | chr5.1:41900763-41900782 | MS.gene78745:CDS | 30.0% | |
| TTACCAAAACACCAGAATTA+GGG | + | chr5.1:41900055-41900074 | None:intergenic | 30.0% | |
| TTCTACTTAAAAACCTTGGA+GGG | + | chr5.1:41901130-41901149 | None:intergenic | 30.0% | |
| TTGCTAGTATTGTAGCATAA+GGG | - | chr5.1:41900628-41900647 | MS.gene78745:CDS | 30.0% | |
| TTTGCTAGTATTGTAGCATA+AGG | - | chr5.1:41900627-41900646 | MS.gene78745:CDS | 30.0% | |
| ! | AAATAACGGGGAATATACTT+AGG | - | chr5.1:41900412-41900431 | MS.gene78745:CDS | 30.0% |
| !! | AGCTATGATGGATAATAAGA+TGG | - | chr5.1:41901493-41901512 | MS.gene78745:intron | 30.0% |
| !! | CTTGAGTTGTTTTATAGATC+AGG | - | chr5.1:41900164-41900183 | MS.gene78745:CDS | 30.0% |
| !! | GGAATTTCAAGTTAAGAAAG+TGG | - | chr5.1:41901652-41901671 | MS.gene78745:CDS | 30.0% |
| !! | TATCACATAGTATTGATTGG+AGG | + | chr5.1:41900258-41900277 | None:intergenic | 30.0% |
| !! | TTGAAACCAACATCTTGTTT+TGG | - | chr5.1:41900089-41900108 | MS.gene78745:CDS | 30.0% |
| !!! | ATGTAGCTGAAAGTTTTTTG+TGG | - | chr5.1:41901516-41901535 | MS.gene78745:CDS | 30.0% |
| !!! | TGAAACCAACATCTTGTTTT+GGG | - | chr5.1:41900090-41900109 | MS.gene78745:CDS | 30.0% |
| AAAGAAGTGGTTGTAATTGC+TGG | - | chr5.1:41901464-41901483 | MS.gene78745:intron | 35.0% | |
| AAGAAGTGGTTGTAATTGCT+GGG | - | chr5.1:41901465-41901484 | MS.gene78745:intron | 35.0% | |
| AATGTAACTTTGCTTCTACG+AGG | + | chr5.1:41901065-41901084 | None:intergenic | 35.0% | |
| AGATTACACTAGAGCAGAAA+TGG | - | chr5.1:41901369-41901388 | MS.gene78745:intron | 35.0% | |
| AGCAAAGTTACATTAAGGAG+TGG | - | chr5.1:41901071-41901090 | MS.gene78745:intron | 35.0% | |
| AGCATACAATAACTCAAAGG+AGG | - | chr5.1:41900944-41900963 | MS.gene78745:intron | 35.0% | |
| ATCATCAGTTAAGGAGCAAA+TGG | - | chr5.1:41901792-41901811 | MS.gene78745:CDS | 35.0% | |
| ATCTTCATGGCAAGAAAAGA+GGG | - | chr5.1:41900279-41900298 | MS.gene78745:CDS | 35.0% | |
| ATTTGCTCCTTAACTGATGA+TGG | + | chr5.1:41901793-41901812 | None:intergenic | 35.0% | |
| CAATAGTTGAGAGAATGAAG+TGG | - | chr5.1:41901591-41901610 | MS.gene78745:CDS | 35.0% | |
| CACCTTCTACTTAAAAACCT+TGG | + | chr5.1:41901134-41901153 | None:intergenic | 35.0% | |
| CCCTTCATGTTTATCAAAGA+AGG | - | chr5.1:41901299-41901318 | MS.gene78745:intron | 35.0% | |
| CTGATTAAGAACTGGAATGA+AGG | + | chr5.1:41900228-41900247 | None:intergenic | 35.0% | |
| CTTCTACTTAAAAACCTTGG+AGG | + | chr5.1:41901131-41901150 | None:intergenic | 35.0% | |
| GACTTCTTGTACAAAGAAAG+AGG | + | chr5.1:41899999-41900018 | None:intergenic | 35.0% | |
| GAGCTGTTAGATTTGAATAC+AGG | - | chr5.1:41900759-41900778 | MS.gene78745:CDS | 35.0% | |
| GATTACACTAGAGCAGAAAT+GGG | - | chr5.1:41901370-41901389 | MS.gene78745:intron | 35.0% | |
| TCAAACACCATCATCAGTTA+AGG | - | chr5.1:41901783-41901802 | MS.gene78745:CDS | 35.0% | |
| TCATCAGTTAAGGAGCAAAT+GGG | - | chr5.1:41901793-41901812 | MS.gene78745:CDS | 35.0% | |
| TGCTGTTGTTCAAAAAGAAG+TGG | - | chr5.1:41901451-41901470 | MS.gene78745:intron | 35.0% | |
| TTTGTACAAGAAGTCTGAAG+AGG | - | chr5.1:41900004-41900023 | MS.gene78745:CDS | 35.0% | |
| ! | AACTCAAGGTTCATGTTTTG+AGG | + | chr5.1:41900152-41900171 | None:intergenic | 35.0% |
| ! | ACTTCAGTGACTTTGAGTTT+CGG | + | chr5.1:41900503-41900522 | None:intergenic | 35.0% |
| ! | ATGATGGTGTTTGAAAGCAT+AGG | + | chr5.1:41901777-41901796 | None:intergenic | 35.0% |
| ! | GGAAGCATACAATAACTCAA+AGG | - | chr5.1:41900941-41900960 | MS.gene78745:intron | 35.0% |
| ! | TTCTGAACATCTGTTTGCTA+TGG | + | chr5.1:41901252-41901271 | None:intergenic | 35.0% |
| !! | AAAGTGTTGTTGTGGGAAAA+TGG | - | chr5.1:41901270-41901289 | MS.gene78745:intron | 35.0% |
| !! | ACTCAAGGTTCATGTTTTGA+GGG | + | chr5.1:41900151-41900170 | None:intergenic | 35.0% |
| !! | ATGTTCAGAAAGTGTTGTTG+TGG | - | chr5.1:41901262-41901281 | MS.gene78745:intron | 35.0% |
| !! | TAGTATTGATTGGAGGACAA+TGG | + | chr5.1:41900251-41900270 | None:intergenic | 35.0% |
| !! | TGTTCAGAAAGTGTTGTTGT+GGG | - | chr5.1:41901263-41901282 | MS.gene78745:intron | 35.0% |
| !!! | CAAGGTTTTTAAGTAGAAGG+TGG | - | chr5.1:41901132-41901151 | MS.gene78745:intron | 35.0% |
| !!! | CTCCAAGGTTTTTAAGTAGA+AGG | - | chr5.1:41901129-41901148 | MS.gene78745:intron | 35.0% |
| AACTCATGCACATGTACTCA+TGG | + | chr5.1:41900700-41900719 | None:intergenic | 40.0% | |
| AAGGCAAACCCTTAACTTCA+TGG | + | chr5.1:41900127-41900146 | None:intergenic | 40.0% | |
| ACGGCGTAAGGTTGAAATAA+CGG | - | chr5.1:41900398-41900417 | MS.gene78745:CDS | 40.0% | |
| CATCTTCATGGCAAGAAAAG+AGG | - | chr5.1:41900278-41900297 | MS.gene78745:CDS | 40.0% | |
| CCAAGACTTGAATCACTTGA+TGG | + | chr5.1:41901173-41901192 | None:intergenic | 40.0% | |
| CCATCAAGTGATTCAAGTCT+TGG | - | chr5.1:41901170-41901189 | MS.gene78745:intron | 40.0% | |
| GAAACTCAAAGTCACTGAAG+TGG | - | chr5.1:41900502-41900521 | MS.gene78745:CDS | 40.0% | |
| GACAATGGCTGATTAAGAAC+TGG | + | chr5.1:41900236-41900255 | None:intergenic | 40.0% | |
| GCTAAATCTGTTGCTGAAGA+TGG | - | chr5.1:41901101-41901120 | MS.gene78745:intron | 40.0% | |
| GCTATGGTGAAATCGAATTC+TGG | + | chr5.1:41901236-41901255 | None:intergenic | 40.0% | |
| GTTGGAGAAAAGAACAGTGT+GGG | - | chr5.1:41901557-41901576 | MS.gene78745:CDS | 40.0% | |
| TATCTCTATTACCCTGAACG+TGG | + | chr5.1:41900825-41900844 | None:intergenic | 40.0% | |
| TGTTGGAGAAAAGAACAGTG+TGG | - | chr5.1:41901556-41901575 | MS.gene78745:CDS | 40.0% | |
| TTAAACTCGATCGTCAAAGC+AGG | - | chr5.1:41900548-41900567 | MS.gene78745:CDS | 40.0% | |
| TTATATAGTACCACGGCGTA+AGG | - | chr5.1:41900386-41900405 | MS.gene78745:CDS | 40.0% | |
| TTGAAGGGACTAATAAGGGA+TGG | - | chr5.1:41901681-41901700 | MS.gene78745:CDS | 40.0% | |
| !! | GAAATCGAATTCTGGTTTCC+CGG | + | chr5.1:41901228-41901247 | None:intergenic | 40.0% |
| !! | GGAGAGTACCATGAAGTTAA+GGG | - | chr5.1:41900116-41900135 | MS.gene78745:CDS | 40.0% |
| !!! | ACCAACATCTTGTTTTGGGT+TGG | - | chr5.1:41900094-41900113 | MS.gene78745:CDS | 40.0% |
| !!! | AGGTTCATGTTTTGAGGGAA+AGG | + | chr5.1:41900146-41900165 | None:intergenic | 40.0% |
| !!! | CCAACATCTTGTTTTGGGTT+GGG | - | chr5.1:41900095-41900114 | MS.gene78745:CDS | 40.0% |
| AAGTGGTTGTAATTGCTGGG+TGG | - | chr5.1:41901468-41901487 | MS.gene78745:intron | 45.0% | |
| AGTGGTTGTAATTGCTGGGT+GGG | - | chr5.1:41901469-41901488 | MS.gene78745:intron | 45.0% | |
| CCCAACCCAAAACAAGATGT+TGG | + | chr5.1:41900098-41900117 | None:intergenic | 45.0% | |
| CGGCGTAAGGTTGAAATAAC+GGG | - | chr5.1:41900399-41900418 | MS.gene78745:CDS | 45.0% | |
| GAACAGTGTGGGTTTGAGTA+TGG | - | chr5.1:41901568-41901587 | MS.gene78745:CDS | 45.0% | |
| GGCGTAAGGTTGAAATAACG+GGG | - | chr5.1:41900400-41900419 | MS.gene78745:CDS | 45.0% | |
| TAACTCAAAGGAGGAAGACG+TGG | - | chr5.1:41900953-41900972 | MS.gene78745:intron | 45.0% | |
| ! | AGGCCCTAATTCTGGTGTTT+TGG | - | chr5.1:41900049-41900068 | MS.gene78745:CDS | 45.0% |
| ! | GTTATTTCAACCTTACGCCG+TGG | + | chr5.1:41900399-41900418 | None:intergenic | 45.0% |
| !! | ATGGCTTGGTGGGAAAGAAA+AGG | - | chr5.1:41901631-41901650 | MS.gene78745:CDS | 45.0% |
| !! | GGGAGAGTACCATGAAGTTA+AGG | - | chr5.1:41900115-41900134 | MS.gene78745:CDS | 45.0% |
| !! | TCAAGTCTTGGAGAAGCATC+AGG | - | chr5.1:41901182-41901201 | MS.gene78745:intron | 45.0% |
| AACTCTGTTGCACGATGCAG+CGG | - | chr5.1:41900730-41900749 | MS.gene78745:CDS | 50.0% | |
| AATGAAGTGGGAGCAGGAGA+GGG | - | chr5.1:41901604-41901623 | MS.gene78745:CDS | 50.0% | |
| ACACCAGAATTAGGGCCTTC+TGG | + | chr5.1:41900047-41900066 | None:intergenic | 50.0% | |
| CTCTCATTACCTCCACCAGA+AGG | - | chr5.1:41900029-41900048 | MS.gene78745:CDS | 50.0% | |
| CTGAAGATGGATACCCTCCA+AGG | - | chr5.1:41901114-41901133 | MS.gene78745:intron | 50.0% | |
| GCATCGTGCAACAGAGTTAG+AGG | + | chr5.1:41900728-41900747 | None:intergenic | 50.0% | |
| GTCAAAGCAGGCGTCACTTA+AGG | - | chr5.1:41900560-41900579 | MS.gene78745:CDS | 50.0% | |
| TGAGAGAATGAAGTGGGAGC+AGG | - | chr5.1:41901598-41901617 | MS.gene78745:CDS | 50.0% | |
| CCACCAGAAGGCCCTAATTC+TGG | - | chr5.1:41900041-41900060 | MS.gene78745:CDS | 55.0% | |
| CCAGAATTAGGGCCTTCTGG+TGG | + | chr5.1:41900044-41900063 | None:intergenic | 55.0% | |
| GAATGAAGTGGGAGCAGGAG+AGG | - | chr5.1:41901603-41901622 | MS.gene78745:CDS | 55.0% | |
| GAATTAGGGCCTTCTGGTGG+AGG | + | chr5.1:41900041-41900060 | None:intergenic | 55.0% | |
| GCAGCGAGTGCTAGAACTGT+TGG | + | chr5.1:41900803-41900822 | None:intergenic | 55.0% | |
| GTAGATGATTCCCTCCGTGC+CGG | - | chr5.1:41901206-41901225 | MS.gene78745:intron | 55.0% | |
| TAGATGATTCCCTCCGTGCC+GGG | - | chr5.1:41901207-41901226 | MS.gene78745:intron | 55.0% | |
| TGCTGGGTGGGAAGCTATGA+TGG | - | chr5.1:41901481-41901500 | MS.gene78745:intron | 55.0% | |
| !! | AGAGGGTTGGATGGCTTGGT+GGG | - | chr5.1:41901621-41901640 | MS.gene78745:CDS | 55.0% |
| !! | CGAATTCTGGTTTCCCGGCA+CGG | + | chr5.1:41901223-41901242 | None:intergenic | 55.0% |
| AAGTGGGAGCAGGAGAGGGT+TGG | - | chr5.1:41901608-41901627 | MS.gene78745:CDS | 60.0% | |
| AGCACTCGCTGCCACGTTCA+GGG | - | chr5.1:41900811-41900830 | MS.gene78745:CDS | 60.0% | |
| CAGGAGAGGGTTGGATGGCT+TGG | - | chr5.1:41901617-41901636 | MS.gene78745:CDS | 60.0% | |
| TAGCACTCGCTGCCACGTTC+AGG | - | chr5.1:41900810-41900829 | MS.gene78745:CDS | 60.0% | |
| ! | GAGAGGGTTGGATGGCTTGG+TGG | - | chr5.1:41901620-41901639 | MS.gene78745:CDS | 60.0% |
| !! | ATTCTGGTTTCCCGGCACGG+AGG | + | chr5.1:41901220-41901239 | None:intergenic | 60.0% |
| !! | TTCTGGTTTCCCGGCACGGA+GGG | + | chr5.1:41901219-41901238 | None:intergenic | 60.0% |
| GGGAGCAGGAGAGGGTTGGA+TGG | - | chr5.1:41901612-41901631 | MS.gene78745:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 41899981 | 41901820 | 41899981 | ID=MS.gene78745 |
| chr5.1 | mRNA | 41899981 | 41901820 | 41899981 | ID=MS.gene78745.t1;Parent=MS.gene78745 |
| chr5.1 | exon | 41901501 | 41901820 | 41901501 | ID=MS.gene78745.t1.exon1;Parent=MS.gene78745.t1 |
| chr5.1 | CDS | 41901501 | 41901820 | 41901501 | ID=cds.MS.gene78745.t1;Parent=MS.gene78745.t1 |
| chr5.1 | exon | 41899981 | 41900860 | 41899981 | ID=MS.gene78745.t1.exon2;Parent=MS.gene78745.t1 |
| chr5.1 | CDS | 41899981 | 41900860 | 41899981 | ID=cds.MS.gene78745.t1;Parent=MS.gene78745.t1 |
| Gene Sequence |
| Protein sequence |
