Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68295.t1 | RHN55134.1 | 78.8 | 448 | 33 | 2 | 1 | 448 | 31 | 416 | 8.50E-197 | 696.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68295.t1 | G7K475 | 78.8 | 448 | 33 | 2 | 1 | 448 | 1 | 386 | 6.1e-197 | 696.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68295 | MS.gene45120 | PPI |
| MS.gene45117 | MS.gene68295 | PPI |
| MS.gene68295 | MS.gene45118 | PPI |
| MS.gene68295 | MS.gene78745 | PPI |
| MS.gene68295 | MS.gene027538 | PPI |
| MS.gene68295 | MS.gene027536 | PPI |
| MS.gene027544 | MS.gene68295 | PPI |
| MS.gene68295 | MS.gene027539 | PPI |
| MS.gene68295 | MS.gene45116 | PPI |
| MS.gene68295 | MS.gene027540 | PPI |
| MS.gene68295 | MS.gene027537 | PPI |
| MS.gene68293 | MS.gene68295 | PPI |
| MS.gene68295 | MS.gene027534 | PPI |
| MS.gene68295 | MS.gene042700 | PPI |
| MS.gene68295 | MS.gene45114 | PPI |
| MS.gene68295 | MS.gene68298 | PPI |
| MS.gene045965 | MS.gene68295 | PPI |
| MS.gene68295 | MS.gene027535 | PPI |
| MS.gene68295 | MS.gene45117 | PPI |
| MS.gene68295 | MS.gene43936 | PPI |
| MS.gene68295 | MS.gene45119 | PPI |
| MS.gene68296 | MS.gene68295 | PPI |
| MS.gene68295 | MS.gene68292 | PPI |
| MS.gene68295 | MS.gene43935 | PPI |
| MS.gene68295 | MS.gene027543 | PPI |
| MS.gene68295 | MS.gene053932 | PPI |
| MS.gene68295 | MS.gene045965 | PPI |
| MS.gene68297 | MS.gene68295 | PPI |
| MS.gene45115 | MS.gene68295 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68295.t1 | MTR_5g035690 | 75.000 | 448 | 50 | 5 | 1 | 448 | 1 | 386 | 0.0 | 641 |
| MS.gene68295.t1 | MTR_5g035665 | 92.208 | 308 | 24 | 0 | 141 | 448 | 72 | 379 | 0.0 | 590 |
| MS.gene68295.t1 | MTR_5g035665 | 78.481 | 79 | 17 | 0 | 1 | 79 | 1 | 79 | 4.21e-35 | 134 |
| MS.gene68295.t1 | MTR_5g035750 | 82.857 | 350 | 54 | 3 | 105 | 448 | 38 | 387 | 0.0 | 583 |
| MS.gene68295.t1 | MTR_5g035750 | 85.075 | 67 | 10 | 0 | 1 | 67 | 1 | 67 | 1.17e-32 | 127 |
| MS.gene68295.t1 | MTR_5g035670 | 77.364 | 349 | 69 | 4 | 105 | 448 | 38 | 381 | 0.0 | 532 |
| MS.gene68295.t1 | MTR_5g035670 | 91.045 | 67 | 6 | 0 | 1 | 67 | 1 | 67 | 3.34e-33 | 129 |
| MS.gene68295.t1 | MTR_5g035760 | 78.827 | 307 | 63 | 2 | 144 | 448 | 74 | 380 | 4.67e-176 | 498 |
| MS.gene68295.t1 | MTR_5g035760 | 81.250 | 64 | 12 | 0 | 1 | 64 | 1 | 64 | 4.38e-25 | 106 |
| MS.gene68295.t1 | MTR_6g472110 | 48.864 | 352 | 151 | 12 | 118 | 448 | 56 | 399 | 3.64e-97 | 297 |
| MS.gene68295.t1 | MTR_6g472110 | 51.515 | 66 | 32 | 0 | 1 | 66 | 1 | 66 | 1.45e-15 | 78.6 |
| MS.gene68295.t1 | MTR_6g016660 | 42.813 | 327 | 165 | 7 | 141 | 448 | 75 | 398 | 2.12e-76 | 244 |
| MS.gene68295.t1 | MTR_6g016660 | 44.118 | 68 | 36 | 1 | 1 | 66 | 1 | 68 | 1.71e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68295.t1 | AT1G13480 | 41.449 | 345 | 175 | 11 | 118 | 448 | 56 | 387 | 1.65e-75 | 241 |
| MS.gene68295.t1 | AT1G13480 | 49.254 | 67 | 34 | 0 | 1 | 67 | 1 | 67 | 1.15e-14 | 75.9 |
| MS.gene68295.t1 | AT1G13530 | 42.470 | 332 | 166 | 12 | 132 | 448 | 64 | 385 | 4.46e-75 | 240 |
| MS.gene68295.t1 | AT1G13530 | 50.000 | 66 | 33 | 0 | 1 | 66 | 1 | 66 | 2.75e-13 | 71.6 |
| MS.gene68295.t1 | AT1G13520 | 44.012 | 334 | 160 | 12 | 132 | 448 | 64 | 387 | 3.17e-74 | 238 |
| MS.gene68295.t1 | AT1G13520 | 51.515 | 66 | 32 | 0 | 1 | 66 | 1 | 66 | 3.76e-14 | 74.3 |
| MS.gene68295.t1 | AT1G13510 | 41.349 | 341 | 177 | 10 | 118 | 448 | 53 | 380 | 3.43e-74 | 238 |
| MS.gene68295.t1 | AT1G13510 | 51.429 | 70 | 31 | 2 | 1 | 67 | 1 | 70 | 4.97e-14 | 73.9 |
| MS.gene68295.t1 | AT1G13470 | 46.057 | 317 | 152 | 10 | 141 | 448 | 72 | 378 | 1.93e-73 | 236 |
| MS.gene68295.t1 | AT1G13490 | 44.545 | 330 | 159 | 11 | 132 | 448 | 64 | 382 | 2.03e-72 | 233 |
| MS.gene68295.t1 | AT1G13490 | 48.485 | 66 | 34 | 0 | 1 | 66 | 1 | 66 | 4.15e-14 | 73.9 |
| MS.gene68295.t1 | AT1G13540 | 43.293 | 328 | 163 | 10 | 131 | 448 | 67 | 381 | 3.09e-72 | 233 |
| MS.gene68295.t1 | AT1G13540 | 47.887 | 71 | 33 | 2 | 1 | 67 | 1 | 71 | 8.48e-13 | 70.1 |
| MS.gene68295.t1 | AT1G13500 | 44.277 | 332 | 159 | 13 | 132 | 448 | 66 | 386 | 2.49e-69 | 225 |
| MS.gene68295.t1 | AT1G61600 | 37.500 | 352 | 179 | 7 | 136 | 448 | 72 | 421 | 1.22e-65 | 217 |
| MS.gene68295.t1 | AT1G61600 | 44.304 | 79 | 40 | 2 | 1 | 77 | 1 | 77 | 7.68e-12 | 67.4 |
| MS.gene68295.t1 | AT1G13490 | 42.553 | 329 | 148 | 11 | 132 | 448 | 64 | 363 | 2.11e-64 | 212 |
| MS.gene68295.t1 | AT1G13490 | 48.485 | 66 | 34 | 0 | 1 | 66 | 1 | 66 | 3.56e-14 | 74.3 |
| MS.gene68295.t1 | AT1G13550 | 40.184 | 326 | 168 | 12 | 137 | 445 | 70 | 385 | 4.87e-62 | 206 |
| MS.gene68295.t1 | AT1G13550 | 57.812 | 64 | 27 | 0 | 1 | 64 | 1 | 64 | 1.49e-17 | 84.7 |
Find 109 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGAACAATCATTGAAAAT+TGG | 0.211604 | 5.2:-26224015 | None:intergenic |
| ATCACAAGATAACTTGAATT+TGG | 0.219309 | 5.2:-26223080 | None:intergenic |
| CCTTCCTTCACAAACATAAA+TGG | 0.225580 | 5.2:-26224066 | None:intergenic |
| AAAATTGGAAAGTTGAAATT+TGG | 0.232410 | 5.2:-26224000 | None:intergenic |
| CCTGGGTTATTGAGGGAAAA+AGG | 0.234439 | 5.2:+26223895 | MS.gene68295:CDS |
| AAGAAGGAAGGGGAAGTATC+TGG | 0.248156 | 5.2:+26223499 | MS.gene68295:CDS |
| GTAACAAAAGTTGAAGAATT+TGG | 0.252999 | 5.2:+26224399 | MS.gene68295:CDS |
| AGCCTAAAGCTTGGCTTAAA+TGG | 0.254543 | 5.2:-26223951 | None:intergenic |
| GAGGAGAATGGATACAAAAT+TGG | 0.267080 | 5.2:+26224479 | MS.gene68295:CDS |
| GCACAAACTTACTCTTGTTT+TGG | 0.306130 | 5.2:+26223116 | MS.gene68295:CDS |
| GCCTCTGATGGAATTCCTCC+TGG | 0.316217 | 5.2:+26223877 | MS.gene68295:CDS |
| TTCAAGTTATCTTGTGATAT+CGG | 0.316747 | 5.2:+26223085 | MS.gene68295:CDS |
| AACAGTCAAACTGGTTATTC+TGG | 0.324084 | 5.2:+26223287 | MS.gene68295:CDS |
| CGTCAAACTGGTTATTCATT+TGG | 0.324238 | 5.2:+26223317 | MS.gene68295:CDS |
| TCTGGTGTAAACCGTCAAAT+TGG | 0.326717 | 5.2:+26223365 | MS.gene68295:CDS |
| AGTGAAACTGGTTATTCATT+TGG | 0.347848 | 5.2:+26223230 | MS.gene68295:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.348614 | 5.2:+26224305 | MS.gene68295:CDS |
| CGTCAAATTGGTTATTCATC+TGG | 0.351714 | 5.2:+26223377 | MS.gene68295:CDS |
| TTGAAGGGCTCCAAAGCTAT+TGG | 0.369259 | 5.2:-26223796 | None:intergenic |
| TGAAGGAAAGGATGCTGTTT+GGG | 0.370832 | 5.2:+26224233 | MS.gene68295:CDS |
| AAAGTTGAAATTTGGTAGCT+TGG | 0.373273 | 5.2:-26223992 | None:intergenic |
| TATTATTCATATTATTCATC+TGG | 0.375589 | 5.2:+26223200 | MS.gene68295:CDS |
| TTGGCTTAAATGGTAGTTGC+GGG | 0.384872 | 5.2:-26223941 | None:intergenic |
| GACAATGGTTGATTCAATAC+TGG | 0.394738 | 5.2:-26223455 | None:intergenic |
| CCTTTGAACTTGTATTAGCT+TGG | 0.394949 | 5.2:-26223723 | None:intergenic |
| AAATGGGAACAAAGAAGGTT+TGG | 0.394970 | 5.2:+26224345 | MS.gene68295:CDS |
| TTGAAGGAAAGGATGCTGTT+TGG | 0.397380 | 5.2:+26224232 | MS.gene68295:CDS |
| CACATCAAATTAGAAGCAAA+TGG | 0.398449 | 5.2:+26224526 | MS.gene68295:CDS |
| TGATGTTAAACCAATAGCTT+TGG | 0.399590 | 5.2:+26223786 | MS.gene68295:CDS |
| TCTGGTGTAAACAGTGAAAC+TGG | 0.402820 | 5.2:+26223218 | MS.gene68295:CDS |
| AAGTTATTCTTTGAGGAGAA+TGG | 0.403630 | 5.2:+26224467 | MS.gene68295:CDS |
| AGAAGGAAGGGGAAGTATCT+GGG | 0.414602 | 5.2:+26223500 | MS.gene68295:CDS |
| TTTGGTGTAAACAGTCAAAC+TGG | 0.418830 | 5.2:+26223248 | MS.gene68295:CDS |
| CTTTCAGATCCACCACCATC+AGG | 0.422039 | 5.2:+26223056 | MS.gene68295:CDS |
| TCTGGTGTAAACAGTCAAAC+TGG | 0.425313 | 5.2:+26223395 | MS.gene68295:CDS |
| CTTTCCAACAACCACTGATT+CGG | 0.426945 | 5.2:-26224034 | None:intergenic |
| ACTGAAGTTGCTAAGGTTGA+AGG | 0.427895 | 5.2:+26224216 | MS.gene68295:CDS |
| CGTCAAACTGGTTATTCATC+TGG | 0.429694 | 5.2:+26223347 | MS.gene68295:CDS |
| TTTGGTGTAAACCGTCAAAC+TGG | 0.430290 | 5.2:+26223335 | MS.gene68295:CDS |
| AGAAGGTTTGGATGGAATGC+TGG | 0.431581 | 5.2:+26224357 | MS.gene68295:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5.2:+26224130 | MS.gene68295:CDS |
| TACCATTTAAGCCAAGCTTT+AGG | 0.432191 | 5.2:+26223949 | MS.gene68295:CDS |
| TCTGGTGTAAACCGTCAAAC+TGG | 0.437938 | 5.2:+26223305 | MS.gene68295:CDS |
| CAAATGAATAACCAGTTTGA+CGG | 0.447162 | 5.2:-26223316 | None:intergenic |
| GCCCTTCAATGATTATCAAC+AGG | 0.448229 | 5.2:+26223810 | MS.gene68295:CDS |
| CAGATGAATAACCAATTTGA+CGG | 0.456220 | 5.2:-26223376 | None:intergenic |
| TGAATAATATGAATAATAGA+TGG | 0.458234 | 5.2:-26223195 | None:intergenic |
| TCGGGTGAAAACAGTCAAAC+TGG | 0.459314 | 5.2:+26223278 | MS.gene68295:CDS |
| GCAAAATCCGTTGCCTCTGA+TGG | 0.460171 | 5.2:+26223865 | MS.gene68295:CDS |
| GACTTCTTTCCATGTACAAA+AGG | 0.463091 | 5.2:+26223021 | MS.gene68295:CDS |
| TGGTTGAAAGTTATTCTTTG+AGG | 0.464463 | 5.2:+26224460 | MS.gene68295:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5.2:+26224255 | MS.gene68295:CDS |
| GAATTCCTCCTGGGTTATTG+AGG | 0.466329 | 5.2:+26223887 | MS.gene68295:CDS |
| TACCTGTTGATAATCATTGA+AGG | 0.466990 | 5.2:-26223812 | None:intergenic |
| GTTTGGATGGAATGCTGGGA+AGG | 0.467693 | 5.2:+26224362 | MS.gene68295:CDS |
| CAGATGAATAACCAGTTTGA+CGG | 0.469325 | 5.2:-26223346 | None:intergenic |
| TTAGCAACTTCAGTTTGAAT+CGG | 0.472026 | 5.2:-26224207 | None:intergenic |
| GAATTTGGCCCTGATGGTGG+TGG | 0.488919 | 5.2:-26223065 | None:intergenic |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.489041 | 5.2:+26224165 | MS.gene68295:CDS |
| GAAATTTAGTAGTTATGTGT+TGG | 0.494117 | 5.2:+26224440 | MS.gene68295:CDS |
| TGTGCAAGGACAATAGAATC+AGG | 0.495706 | 5.2:+26223141 | MS.gene68295:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.2:+26224066 | MS.gene68295:CDS |
| TGTTTGGGATGAAAATAGAT+TGG | 0.498350 | 5.2:+26224248 | MS.gene68295:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.507064 | 5.2:+26223483 | MS.gene68295:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.507438 | 5.2:+26224363 | MS.gene68295:CDS |
| CAGTCAAACTGGTTATTCAT+CGG | 0.508046 | 5.2:+26223259 | MS.gene68295:CDS |
| AATTCCTCCTGGGTTATTGA+GGG | 0.509022 | 5.2:+26223888 | MS.gene68295:CDS |
| AGTCAAACTGGTTATTCATC+GGG | 0.512495 | 5.2:+26223260 | MS.gene68295:CDS |
| CCTCTGATGGAATTCCTCCT+GGG | 0.518745 | 5.2:+26223878 | MS.gene68295:CDS |
| GGGAACAAAGAAGGTTTGGA+TGG | 0.521569 | 5.2:+26224349 | MS.gene68295:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.522008 | 5.2:+26223487 | MS.gene68295:CDS |
| CAATGAAATGGGAACAAAGA+AGG | 0.524360 | 5.2:+26224340 | MS.gene68295:CDS |
| ACATCAAATTAGAAGCAAAT+GGG | 0.528084 | 5.2:+26224527 | MS.gene68295:CDS |
| TAATACAAGTTCAAAGGAAG+AGG | 0.529363 | 5.2:+26223729 | MS.gene68295:CDS |
| GATTCAAACTGAAGTTGCTA+AGG | 0.530396 | 5.2:+26224209 | MS.gene68295:CDS |
| TACTATGTTATAAGAAGGAA+GGG | 0.531189 | 5.2:+26223488 | MS.gene68295:CDS |
| ATTTGGTAGCTTGGAACGCA+AGG | 0.531864 | 5.2:-26223983 | None:intergenic |
| AAGTTGTTGAGGCAATGAAA+TGG | 0.534687 | 5.2:+26224328 | MS.gene68295:CDS |
| AATTTGGTGGAACAAACAAA+TGG | 0.536388 | 5.2:+26224415 | MS.gene68295:CDS |
| AGTGTTGATGAGAAAAGTGT+TGG | 0.538886 | 5.2:+26224294 | MS.gene68295:CDS |
| CAATGATTGTTCCGAATCAG+TGG | 0.541309 | 5.2:+26224023 | MS.gene68295:CDS |
| ACCTGTTGATAATCATTGAA+GGG | 0.546054 | 5.2:-26223811 | None:intergenic |
| ACAAAAGTTGAAGAATTTGG+TGG | 0.548037 | 5.2:+26224402 | MS.gene68295:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | 5.2:-26223071 | None:intergenic |
| CCAAGCTAATACAAGTTCAA+AGG | 0.554728 | 5.2:+26223723 | MS.gene68295:CDS |
| GAAGGTTTGGATGGAATGCT+GGG | 0.561735 | 5.2:+26224358 | MS.gene68295:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.563048 | 5.2:+26224037 | MS.gene68295:CDS |
| AATCATTTGAGCCTAAAGCT+TGG | 0.566503 | 5.2:-26223960 | None:intergenic |
| TTATCTTGTGATATCGGATG+AGG | 0.567170 | 5.2:+26223091 | MS.gene68295:CDS |
| AGTTGTTGAGGCAATGAAAT+GGG | 0.574296 | 5.2:+26224329 | MS.gene68295:CDS |
| CTTGGCTTAAATGGTAGTTG+CGG | 0.576138 | 5.2:-26223942 | None:intergenic |
| AGTTGCTAAGGTTGAAGGAA+AGG | 0.576444 | 5.2:+26224221 | MS.gene68295:CDS |
| TGTTCCGAATCAGTGGTTGT+TGG | 0.577833 | 5.2:+26224030 | MS.gene68295:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.2:+26224062 | MS.gene68295:CDS |
| GAAGGAAGGGGAAGTATCTG+GGG | 0.586952 | 5.2:+26223501 | MS.gene68295:CDS |
| AGGAATTCCATCAGAGGCAA+CGG | 0.588713 | 5.2:-26223872 | None:intergenic |
| AAGGAAAATAGTGGAGAAGG+TGG | 0.602522 | 5.2:+26224168 | MS.gene68295:CDS |
| CCCAGGAGGAATTCCATCAG+AGG | 0.605151 | 5.2:-26223878 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | 5.2:-26223068 | None:intergenic |
| GGTGGATCTGAAAGAGCACT+AGG | 0.608877 | 5.2:-26223047 | None:intergenic |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5.2:+26224131 | MS.gene68295:CDS |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.614856 | 5.2:+26224317 | MS.gene68295:CDS |
| GAACATAGCTTCTTCACTGT+AGG | 0.624230 | 5.2:-26223429 | None:intergenic |
| TTTCAGATCCACCACCATCA+GGG | 0.624409 | 5.2:+26223057 | MS.gene68295:CDS |
| TCTTGTGATATCGGATGAGG+AGG | 0.644030 | 5.2:+26223094 | MS.gene68295:CDS |
| TGGCTTAAATGGTAGTTGCG+GGG | 0.644475 | 5.2:-26223940 | None:intergenic |
| AAAACCACAATAAAAGCATG+TGG | 0.665724 | 5.2:-26223758 | None:intergenic |
| TAGTAGCGATTCGAAGACAA+TGG | 0.670254 | 5.2:-26223470 | None:intergenic |
| ACTATGTTATAAGAAGGAAG+GGG | 0.684429 | 5.2:+26223489 | MS.gene68295:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTACAATATTCTTTGT+TGG | - | chr5.2:26223584-26223603 | None:intergenic | 15.0% |
| !! | GAAATAATCAAAAAAAGTTA+TGG | + | chr5.2:26223835-26223854 | MS.gene68295:CDS | 15.0% |
| !! | TATTATTCATATTATTCATC+TGG | + | chr5.2:26223200-26223219 | MS.gene68295:CDS | 15.0% |
| !! | TATTTACAATATTCTTTGTT+GGG | - | chr5.2:26223583-26223602 | None:intergenic | 15.0% |
| !! | TGAATAATATGAATAATAGA+TGG | - | chr5.2:26223198-26223217 | None:intergenic | 15.0% |
| !!! | AGACATAATTATATTTTTGT+TGG | + | chr5.2:26223605-26223624 | MS.gene68295:intron | 15.0% |
| !! | AAAATTGGAAAGTTGAAATT+TGG | - | chr5.2:26224003-26224022 | None:intergenic | 20.0% |
| !! | ATAGATTCATAATGTAATAG+TGG | + | chr5.2:26223661-26223680 | MS.gene68295:intron | 20.0% |
| !!! | ATTTTTTCAAAGGAAAATAG+TGG | + | chr5.2:26224159-26224178 | MS.gene68295:CDS | 20.0% |
| ! | ACATCAAATTAGAAGCAAAT+GGG | + | chr5.2:26224527-26224546 | MS.gene68295:CDS | 25.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5.2:26223083-26223102 | None:intergenic | 25.0% |
| ! | GAAATTTAGTAGTTATGTGT+TGG | + | chr5.2:26224440-26224459 | MS.gene68295:CDS | 25.0% |
| ! | GTAACAAAAGTTGAAGAATT+TGG | + | chr5.2:26224399-26224418 | MS.gene68295:CDS | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5.2:26223488-26223507 | MS.gene68295:CDS | 25.0% |
| !! | ATGGTTAAATTTTTGTTCTG+AGG | - | chr5.2:26223179-26223198 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+CGG | + | chr5.2:26223085-26223104 | MS.gene68295:CDS | 25.0% |
| !!! | TTGTTGGTAATTAACTTTCA+TGG | + | chr5.2:26223621-26223640 | MS.gene68295:intron | 25.0% |
| ACAAAAGTTGAAGAATTTGG+TGG | + | chr5.2:26224402-26224421 | MS.gene68295:CDS | 30.0% | |
| ACTATGTTATAAGAAGGAAG+GGG | + | chr5.2:26223489-26223508 | MS.gene68295:CDS | 30.0% | |
| AGTGAAACTGGTTATTCATT+TGG | + | chr5.2:26223230-26223249 | MS.gene68295:CDS | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5.2:26223483-26223502 | MS.gene68295:CDS | 30.0% | |
| CAAATGAATAACCAGTTTGA+CGG | - | chr5.2:26223319-26223338 | None:intergenic | 30.0% | |
| CACATCAAATTAGAAGCAAA+TGG | + | chr5.2:26224526-26224545 | MS.gene68295:CDS | 30.0% | |
| CAGATGAATAACCAATTTGA+CGG | - | chr5.2:26223379-26223398 | None:intergenic | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5.2:26223487-26223506 | MS.gene68295:CDS | 30.0% | |
| TAATACAAGTTCAAAGGAAG+AGG | + | chr5.2:26223729-26223748 | MS.gene68295:CDS | 30.0% | |
| TACAATATTCTTTGTTGGGA+TGG | - | chr5.2:26223579-26223598 | None:intergenic | 30.0% | |
| TCGGAACAATCATTGAAAAT+TGG | - | chr5.2:26224018-26224037 | None:intergenic | 30.0% | |
| TGATGTTAAACCAATAGCTT+TGG | + | chr5.2:26223786-26223805 | MS.gene68295:CDS | 30.0% | |
| TGGTTGAAAGTTATTCTTTG+AGG | + | chr5.2:26224460-26224479 | MS.gene68295:CDS | 30.0% | |
| TTAGCAACTTCAGTTTGAAT+CGG | - | chr5.2:26224210-26224229 | None:intergenic | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.2:26224062-26224081 | MS.gene68295:CDS | 30.0% | |
| ! | AAAACCACAATAAAAGCATG+TGG | - | chr5.2:26223761-26223780 | None:intergenic | 30.0% |
| ! | AAAGTTGAAATTTGGTAGCT+TGG | - | chr5.2:26223995-26224014 | None:intergenic | 30.0% |
| ! | AAGTTATTCTTTGAGGAGAA+TGG | + | chr5.2:26224467-26224486 | MS.gene68295:CDS | 30.0% |
| ! | AATTTGGTGGAACAAACAAA+TGG | + | chr5.2:26224415-26224434 | MS.gene68295:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.2:26224255-26224274 | MS.gene68295:CDS | 30.0% |
| ! | TGTTTGGGATGAAAATAGAT+TGG | + | chr5.2:26224248-26224267 | MS.gene68295:CDS | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5.2:26223814-26223833 | None:intergenic | 30.0% |
| !! | TACCTGTTGATAATCATTGA+AGG | - | chr5.2:26223815-26223834 | None:intergenic | 30.0% |
| !!! | AAATTTTTGTTCTGAGGTAG+AGG | - | chr5.2:26223173-26223192 | None:intergenic | 30.0% |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5.2:26224149-26224168 | MS.gene68295:CDS | 30.0% |
| AAATGGGAACAAAGAAGGTT+TGG | + | chr5.2:26224345-26224364 | MS.gene68295:CDS | 35.0% | |
| AACAGTCAAACTGGTTATTC+TGG | + | chr5.2:26223257-26223276 | MS.gene68295:CDS | 35.0% | |
| AAGTTGTTGAGGCAATGAAA+TGG | + | chr5.2:26224328-26224347 | MS.gene68295:CDS | 35.0% | |
| AATCATTTGAGCCTAAAGCT+TGG | - | chr5.2:26223963-26223982 | None:intergenic | 35.0% | |
| AGTCAAACTGGTTATTCATC+GGG | + | chr5.2:26223260-26223279 | MS.gene68295:CDS | 35.0% | |
| AGTTGTTGAGGCAATGAAAT+GGG | + | chr5.2:26224329-26224348 | MS.gene68295:CDS | 35.0% | |
| ATATTCTTTGTTGGGATGGA+AGG | - | chr5.2:26223575-26223594 | None:intergenic | 35.0% | |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5.2:26224317-26224336 | MS.gene68295:CDS | 35.0% | |
| CAATGAAATGGGAACAAAGA+AGG | + | chr5.2:26224340-26224359 | MS.gene68295:CDS | 35.0% | |
| CAGATGAATAACCAGTTTGA+CGG | - | chr5.2:26223349-26223368 | None:intergenic | 35.0% | |
| CAGTCAAACTGGTTATTCAT+CGG | + | chr5.2:26223259-26223278 | MS.gene68295:CDS | 35.0% | |
| CCAAGCTAATACAAGTTCAA+AGG | + | chr5.2:26223723-26223742 | MS.gene68295:CDS | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.2:26224066-26224085 | MS.gene68295:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.2:26224069-26224088 | None:intergenic | 35.0% | |
| CCTTTGAACTTGTATTAGCT+TGG | - | chr5.2:26223726-26223745 | None:intergenic | 35.0% | |
| CGTCAAACTGGTTATTCATT+TGG | + | chr5.2:26223317-26223336 | MS.gene68295:CDS | 35.0% | |
| CGTCAAATTGGTTATTCATC+TGG | + | chr5.2:26223377-26223396 | MS.gene68295:CDS | 35.0% | |
| GACTTCTTTCCATGTACAAA+AGG | + | chr5.2:26223021-26223040 | MS.gene68295:CDS | 35.0% | |
| GAGGAGAATGGATACAAAAT+TGG | + | chr5.2:26224479-26224498 | MS.gene68295:CDS | 35.0% | |
| GATTCAAACTGAAGTTGCTA+AGG | + | chr5.2:26224209-26224228 | MS.gene68295:CDS | 35.0% | |
| TACCATTTAAGCCAAGCTTT+AGG | + | chr5.2:26223949-26223968 | MS.gene68295:CDS | 35.0% | |
| TATTCTTTGTTGGGATGGAA+GGG | - | chr5.2:26223574-26223593 | None:intergenic | 35.0% | |
| TTATCTTGTGATATCGGATG+AGG | + | chr5.2:26223091-26223110 | MS.gene68295:CDS | 35.0% | |
| ! | ACTAGGATTCCTTTTGTACA+TGG | - | chr5.2:26223033-26223052 | None:intergenic | 35.0% |
| ! | ATGACCACATGCTTTTATTG+TGG | + | chr5.2:26223754-26223773 | MS.gene68295:CDS | 35.0% |
| ! | GACAATGGTTGATTCAATAC+TGG | - | chr5.2:26223458-26223477 | None:intergenic | 35.0% |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5.2:26224165-26224184 | MS.gene68295:CDS | 35.0% |
| ! | TTTGGTGTAAACAGTCAAAC+TGG | + | chr5.2:26223248-26223267 | MS.gene68295:CDS | 35.0% |
| !! | AGTGTTGATGAGAAAAGTGT+TGG | + | chr5.2:26224294-26224313 | MS.gene68295:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.2:26224305-26224324 | MS.gene68295:CDS | 35.0% |
| !! | GCACAAACTTACTCTTGTTT+TGG | + | chr5.2:26223116-26223135 | MS.gene68295:CDS | 35.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.2:26224037-26224056 | MS.gene68295:CDS | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | + | chr5.2:26223888-26223907 | MS.gene68295:CDS | 40.0% | |
| ACTGAAGTTGCTAAGGTTGA+AGG | + | chr5.2:26224216-26224235 | MS.gene68295:CDS | 40.0% | |
| AGCCTAAAGCTTGGCTTAAA+TGG | - | chr5.2:26223954-26223973 | None:intergenic | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5.2:26224130-26224149 | MS.gene68295:CDS | 40.0% | |
| AGTTGCTAAGGTTGAAGGAA+AGG | + | chr5.2:26224221-26224240 | MS.gene68295:CDS | 40.0% | |
| CAATGATTGTTCCGAATCAG+TGG | + | chr5.2:26224023-26224042 | MS.gene68295:CDS | 40.0% | |
| CGTCAAACTGGTTATTCATC+TGG | + | chr5.2:26223347-26223366 | MS.gene68295:CDS | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | + | chr5.2:26223896-26223915 | MS.gene68295:CDS | 40.0% | |
| CTTGGCTTAAATGGTAGTTG+CGG | - | chr5.2:26223945-26223964 | None:intergenic | 40.0% | |
| GAACATAGCTTCTTCACTGT+AGG | - | chr5.2:26223432-26223451 | None:intergenic | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5.2:26223810-26223829 | MS.gene68295:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5.2:26224131-26224150 | MS.gene68295:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5.2:26223074-26223093 | None:intergenic | 40.0% | |
| TAGTAGCGATTCGAAGACAA+TGG | - | chr5.2:26223473-26223492 | None:intergenic | 40.0% | |
| TCTGGTGTAAACAGTCAAAC+TGG | + | chr5.2:26223395-26223414 | MS.gene68295:CDS | 40.0% | |
| TCTGGTGTAAACAGTGAAAC+TGG | + | chr5.2:26223218-26223237 | MS.gene68295:CDS | 40.0% | |
| TCTGGTGTAAACCGTCAAAT+TGG | + | chr5.2:26223365-26223384 | MS.gene68295:CDS | 40.0% | |
| TGTGCAAGGACAATAGAATC+AGG | + | chr5.2:26223141-26223160 | MS.gene68295:CDS | 40.0% | |
| TTGAAGGAAAGGATGCTGTT+TGG | + | chr5.2:26224232-26224251 | MS.gene68295:CDS | 40.0% | |
| TTGGCTTAAATGGTAGTTGC+GGG | - | chr5.2:26223944-26223963 | None:intergenic | 40.0% | |
| ! | AAGGAAAATAGTGGAGAAGG+TGG | + | chr5.2:26224168-26224187 | MS.gene68295:CDS | 40.0% |
| ! | CTTTCCAACAACCACTGATT+CGG | - | chr5.2:26224037-26224056 | None:intergenic | 40.0% |
| ! | TGAAGGAAAGGATGCTGTTT+GGG | + | chr5.2:26224233-26224252 | MS.gene68295:CDS | 40.0% |
| ! | TTTGGTGTAAACCGTCAAAC+TGG | + | chr5.2:26223335-26223354 | MS.gene68295:CDS | 40.0% |
| !!! | CTCTTGTTTTGGTTTGTGCA+AGG | + | chr5.2:26223127-26223146 | MS.gene68295:CDS | 40.0% |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5.2:26224265-26224284 | MS.gene68295:CDS | 40.0% |
| AGAAGGTTTGGATGGAATGC+TGG | + | chr5.2:26224357-26224376 | MS.gene68295:CDS | 45.0% | |
| AGGAATTCCATCAGAGGCAA+CGG | - | chr5.2:26223875-26223894 | None:intergenic | 45.0% | |
| CCTGGGTTATTGAGGGAAAA+AGG | + | chr5.2:26223895-26223914 | MS.gene68295:CDS | 45.0% | |
| GAAGGTTTGGATGGAATGCT+GGG | + | chr5.2:26224358-26224377 | MS.gene68295:CDS | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | + | chr5.2:26223887-26223906 | MS.gene68295:CDS | 45.0% | |
| GGGAACAAAGAAGGTTTGGA+TGG | + | chr5.2:26224349-26224368 | MS.gene68295:CDS | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | + | chr5.2:26223899-26223918 | MS.gene68295:CDS | 45.0% | |
| TCGGGTGAAAACAGTCAAAC+TGG | + | chr5.2:26223278-26223297 | MS.gene68295:CDS | 45.0% | |
| TCTGGTGTAAACCGTCAAAC+TGG | + | chr5.2:26223305-26223324 | MS.gene68295:CDS | 45.0% | |
| TCTTGTGATATCGGATGAGG+AGG | + | chr5.2:26223094-26223113 | MS.gene68295:CDS | 45.0% | |
| TGGCTTAAATGGTAGTTGCG+GGG | - | chr5.2:26223943-26223962 | None:intergenic | 45.0% | |
| TGTTCCGAATCAGTGGTTGT+TGG | + | chr5.2:26224030-26224049 | MS.gene68295:CDS | 45.0% | |
| TTGAAGGGCTCCAAAGCTAT+TGG | - | chr5.2:26223799-26223818 | None:intergenic | 45.0% | |
| TTTCAGATCCACCACCATCA+GGG | + | chr5.2:26223057-26223076 | MS.gene68295:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5.2:26224363-26224382 | MS.gene68295:CDS | 45.0% | |
| ! | ATTTGGTAGCTTGGAACGCA+AGG | - | chr5.2:26223986-26224005 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | - | chr5.2:26223898-26223917 | None:intergenic | 45.0% |
| ! | TTTTCCCTCAATAACCCAGG+AGG | - | chr5.2:26223895-26223914 | None:intergenic | 45.0% |
| !! | AAGAAGGAAGGGGAAGTATC+TGG | + | chr5.2:26223499-26223518 | MS.gene68295:CDS | 45.0% |
| !! | AGAAGGAAGGGGAAGTATCT+GGG | + | chr5.2:26223500-26223519 | MS.gene68295:CDS | 45.0% |
| CCTCTGATGGAATTCCTCCT+GGG | + | chr5.2:26223878-26223897 | MS.gene68295:CDS | 50.0% | |
| CTTGAATTTGGCCCTGATGG+TGG | - | chr5.2:26223071-26223090 | None:intergenic | 50.0% | |
| CTTTCAGATCCACCACCATC+AGG | + | chr5.2:26223056-26223075 | MS.gene68295:CDS | 50.0% | |
| GCAAAATCCGTTGCCTCTGA+TGG | + | chr5.2:26223865-26223884 | MS.gene68295:CDS | 50.0% | |
| GTTTGGATGGAATGCTGGGA+AGG | + | chr5.2:26224362-26224381 | MS.gene68295:CDS | 50.0% | |
| !! | GAAGGAAGGGGAAGTATCTG+GGG | + | chr5.2:26223501-26223520 | MS.gene68295:CDS | 50.0% |
| !! | GGTGGATCTGAAAGAGCACT+AGG | - | chr5.2:26223050-26223069 | None:intergenic | 50.0% |
| CCCAGGAGGAATTCCATCAG+AGG | - | chr5.2:26223881-26223900 | None:intergenic | 55.0% | |
| GCCTCTGATGGAATTCCTCC+TGG | + | chr5.2:26223877-26223896 | MS.gene68295:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5.2:26223068-26223087 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 26223008 | 26224554 | 26223008 | ID=MS.gene68295 |
| chr5.2 | mRNA | 26223008 | 26224554 | 26223008 | ID=MS.gene68295.t1;Parent=MS.gene68295 |
| chr5.2 | exon | 26223008 | 26223522 | 26223008 | ID=MS.gene68295.t1.exon1;Parent=MS.gene68295.t1 |
| chr5.2 | CDS | 26223008 | 26223522 | 26223008 | ID=cds.MS.gene68295.t1;Parent=MS.gene68295.t1 |
| chr5.2 | exon | 26223723 | 26224554 | 26223723 | ID=MS.gene68295.t1.exon2;Parent=MS.gene68295.t1 |
| chr5.2 | CDS | 26223723 | 26224554 | 26223723 | ID=cds.MS.gene68295.t1;Parent=MS.gene68295.t1 |
| Gene Sequence |
| Protein sequence |
