Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68298.t1 | XP_013453735.1 | 91.3 | 381 | 31 | 1 | 1 | 381 | 1 | 379 | 3.00E-203 | 717.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68298.t1 | A0A072UEA2 | 91.3 | 381 | 31 | 1 | 1 | 381 | 1 | 379 | 2.2e-203 | 717.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050379 | MS.gene68298 | 0.800554 | 1.37E-48 | -1.69E-46 |
| MS.gene053963 | MS.gene68298 | 0.815187 | 1.05E-51 | -1.69E-46 |
| MS.gene055147 | MS.gene68298 | 0.802746 | 4.85E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene68298 | 0.80277 | 4.79E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene68298 | 0.802059 | 6.71E-49 | -1.69E-46 |
| MS.gene05624 | MS.gene68298 | 0.816109 | 6.55E-52 | -1.69E-46 |
| MS.gene05952 | MS.gene68298 | 0.836914 | 7.08E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68293 | MS.gene68298 | PPI |
| MS.gene68298 | MS.gene053932 | PPI |
| MS.gene027535 | MS.gene68298 | PPI |
| MS.gene68298 | MS.gene78745 | PPI |
| MS.gene45115 | MS.gene68298 | PPI |
| MS.gene027540 | MS.gene68298 | PPI |
| MS.gene43936 | MS.gene68298 | PPI |
| MS.gene68298 | MS.gene027538 | PPI |
| MS.gene68298 | MS.gene027536 | PPI |
| MS.gene68296 | MS.gene68298 | PPI |
| MS.gene68298 | MS.gene45120 | PPI |
| MS.gene68298 | MS.gene45118 | PPI |
| MS.gene68292 | MS.gene68298 | PPI |
| MS.gene027543 | MS.gene68298 | PPI |
| MS.gene68298 | MS.gene042700 | PPI |
| MS.gene68297 | MS.gene68298 | PPI |
| MS.gene68295 | MS.gene68298 | PPI |
| MS.gene43935 | MS.gene68298 | PPI |
| MS.gene45117 | MS.gene68298 | PPI |
| MS.gene45114 | MS.gene68298 | PPI |
| MS.gene027544 | MS.gene68298 | PPI |
| MS.gene027534 | MS.gene68298 | PPI |
| MS.gene027537 | MS.gene68298 | PPI |
| MS.gene45116 | MS.gene68298 | PPI |
| MS.gene045965 | MS.gene68298 | PPI |
| MS.gene68298 | MS.gene43936 | PPI |
| MS.gene027539 | MS.gene68298 | PPI |
| MS.gene68298 | MS.gene45119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68298.t1 | MTR_5g035665 | 91.339 | 381 | 31 | 1 | 1 | 381 | 1 | 379 | 0.0 | 726 |
| MS.gene68298.t1 | MTR_5g035690 | 87.629 | 388 | 39 | 2 | 1 | 381 | 1 | 386 | 0.0 | 699 |
| MS.gene68298.t1 | MTR_5g035670 | 85.564 | 381 | 55 | 0 | 1 | 381 | 1 | 381 | 0.0 | 669 |
| MS.gene68298.t1 | MTR_5g035750 | 83.548 | 389 | 54 | 2 | 1 | 381 | 1 | 387 | 0.0 | 667 |
| MS.gene68298.t1 | MTR_5g035760 | 77.428 | 381 | 85 | 1 | 1 | 381 | 1 | 380 | 0.0 | 607 |
| MS.gene68298.t1 | MTR_6g472110 | 50.250 | 400 | 179 | 8 | 1 | 381 | 1 | 399 | 1.51e-125 | 367 |
| MS.gene68298.t1 | MTR_6g016660 | 43.719 | 398 | 207 | 7 | 1 | 381 | 1 | 398 | 9.75e-103 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68298.t1 | AT1G13510 | 44.529 | 393 | 193 | 12 | 1 | 381 | 1 | 380 | 6.28e-106 | 317 |
| MS.gene68298.t1 | AT1G13480 | 44.304 | 395 | 198 | 9 | 1 | 381 | 1 | 387 | 8.66e-106 | 317 |
| MS.gene68298.t1 | AT1G13490 | 46.547 | 391 | 190 | 9 | 1 | 381 | 1 | 382 | 9.90e-106 | 316 |
| MS.gene68298.t1 | AT1G13530 | 46.970 | 396 | 184 | 12 | 1 | 381 | 1 | 385 | 1.15e-104 | 314 |
| MS.gene68298.t1 | AT1G13520 | 45.088 | 397 | 192 | 12 | 1 | 381 | 1 | 387 | 6.01e-103 | 309 |
| MS.gene68298.t1 | AT1G13540 | 44.416 | 394 | 193 | 12 | 1 | 381 | 1 | 381 | 6.80e-102 | 306 |
| MS.gene68298.t1 | AT1G13470 | 45.153 | 392 | 190 | 11 | 1 | 381 | 1 | 378 | 1.48e-97 | 295 |
| MS.gene68298.t1 | AT1G13490 | 44.359 | 390 | 181 | 9 | 1 | 381 | 1 | 363 | 1.54e-95 | 290 |
| MS.gene68298.t1 | AT1G13550 | 43.687 | 396 | 194 | 14 | 1 | 378 | 1 | 385 | 3.57e-93 | 285 |
| MS.gene68298.t1 | AT1G13500 | 44.304 | 395 | 197 | 12 | 1 | 381 | 1 | 386 | 8.06e-93 | 283 |
| MS.gene68298.t1 | AT1G61600 | 39.716 | 423 | 211 | 10 | 1 | 381 | 1 | 421 | 6.12e-92 | 282 |
Find 87 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | 5.2:-26207319 | None:intergenic |
| AACCTAACGCTTGGCTTAAT+TGG | 0.212270 | 5.2:-26208620 | None:intergenic |
| TTCAAGTTATCTTGTGATAT+TGG | 0.212889 | 5.2:+26207324 | MS.gene68298:CDS |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5.2:-26208735 | None:intergenic |
| AAAATTGAAAAGTTGAAATT+TGG | 0.220039 | 5.2:-26208669 | None:intergenic |
| GTAACAAATGTTGAAGAATT+TGG | 0.231968 | 5.2:+26209074 | MS.gene68298:CDS |
| CCTGGGTTATTGAGGGAAAA+AGG | 0.234439 | 5.2:+26208564 | MS.gene68298:CDS |
| GAGAAGTGTTGGATTGAGTT+TGG | 0.246834 | 5.2:+26208980 | MS.gene68298:CDS |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5.2:+26208749 | MS.gene68298:CDS |
| GACAATGGTTGATTTAATAC+TGG | 0.344310 | 5.2:-26207487 | None:intergenic |
| GAGAAGAATGGATAAAAGTT+TGG | 0.346178 | 5.2:+26209154 | MS.gene68298:CDS |
| TTGGCTTAATTGGTAGTTGC+GGG | 0.349143 | 5.2:-26208610 | None:intergenic |
| TGAAGGAAAGGATGCTGTTT+GGG | 0.370832 | 5.2:+26208908 | MS.gene68298:CDS |
| TCAAAGGAAAATGAAAATAG+TGG | 0.372912 | 5.2:+26208834 | MS.gene68298:CDS |
| AAATGGGAACAAGAAAGATT+TGG | 0.385031 | 5.2:+26209020 | MS.gene68298:CDS |
| TTGAAGGAAAGGATGCTGTT+TGG | 0.397380 | 5.2:+26208907 | MS.gene68298:CDS |
| GAAAGATTTGGATGGAATGC+TGG | 0.400495 | 5.2:+26209032 | MS.gene68298:CDS |
| GCTCAAACTTACTCTTGCTT+TGG | 0.406381 | 5.2:+26207355 | MS.gene68298:CDS |
| TGATGTTAAACCAAGACCTT+TGG | 0.408050 | 5.2:+26208455 | MS.gene68298:CDS |
| CCTTTGAACTTGTACTAGCT+TGG | 0.411881 | 5.2:-26208392 | None:intergenic |
| TTGAAGGGCTCCAAAGGTCT+TGG | 0.418581 | 5.2:-26208465 | None:intergenic |
| AAGTTATTCATTGAGAAGAA+TGG | 0.420622 | 5.2:+26209142 | MS.gene68298:CDS |
| GCCCTTCAATGATTATCAAC+AGG | 0.423563 | 5.2:+26208479 | MS.gene68298:CDS |
| AGCATCCTTTCCTTCAACCT+TGG | 0.423840 | 5.2:-26208901 | None:intergenic |
| GCTTCAGATGGAATTCCTCC+TGG | 0.427749 | 5.2:+26208546 | MS.gene68298:CDS |
| AAGTTATTGAAGGAATGAAA+TGG | 0.430511 | 5.2:+26209003 | MS.gene68298:CDS |
| AGTGTTGAAGAGAGAAGTGT+TGG | 0.436042 | 5.2:+26208969 | MS.gene68298:CDS |
| ACAGAAGTTGCCAAGGTTGA+AGG | 0.444547 | 5.2:+26208891 | MS.gene68298:CDS |
| AGTTATTGAAGGAATGAAAT+GGG | 0.445708 | 5.2:+26209004 | MS.gene68298:CDS |
| AGAAGGAAGGGAAAGAATCA+AGG | 0.451579 | 5.2:+26207532 | MS.gene68298:CDS |
| GAATTTGGCCCTGATGGTGG+TGG | 0.453647 | 5.2:-26207304 | None:intergenic |
| CTTTCAGACCCACCACCATC+AGG | 0.453725 | 5.2:+26207295 | MS.gene68298:CDS |
| GAACATAGCTTCTTCACTTA+CGG | 0.464253 | 5.2:-26207461 | None:intergenic |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5.2:+26208930 | MS.gene68298:CDS |
| GAATTCCTCCTGGGTTATTG+AGG | 0.466329 | 5.2:+26208556 | MS.gene68298:CDS |
| TTAACCATCGTTATTTCAGC+AGG | 0.467298 | 5.2:+26207430 | MS.gene68298:CDS |
| TTGAGTTTGGAAGTTATTGA+AGG | 0.477504 | 5.2:+26208993 | MS.gene68298:CDS |
| GATTGGTTGATGGAGTGTTA+TGG | 0.478512 | 5.2:+26208940 | MS.gene68298:CDS |
| AACCTGTTGATAATCATTGA+AGG | 0.481565 | 5.2:-26208481 | None:intergenic |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.2:+26208735 | MS.gene68298:CDS |
| TGTTTGGGATGAAAATAGAT+TGG | 0.498350 | 5.2:+26208923 | MS.gene68298:CDS |
| TAGTACAAGTTCAAAGGAAG+AGG | 0.503151 | 5.2:+26208398 | MS.gene68298:CDS |
| AATTCCTCCTGGGTTATTGA+GGG | 0.509022 | 5.2:+26208557 | MS.gene68298:CDS |
| ATTTGGATGGAATGCTGGGA+AGG | 0.512527 | 5.2:+26209037 | MS.gene68298:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.512950 | 5.2:+26207519 | MS.gene68298:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.514101 | 5.2:-26207303 | None:intergenic |
| AATTTGGTGGAACAAACATA+TGG | 0.517000 | 5.2:+26209090 | MS.gene68298:CDS |
| CCAAGCTAGTACAAGTTCAA+AGG | 0.520879 | 5.2:+26208392 | MS.gene68298:CDS |
| TGTTCTGAATCAGTGGTTGT+TGG | 0.524665 | 5.2:+26208699 | MS.gene68298:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.530706 | 5.2:+26209038 | MS.gene68298:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.530832 | 5.2:+26207515 | MS.gene68298:CDS |
| AAAGATTTGGATGGAATGCT+GGG | 0.532701 | 5.2:+26209033 | MS.gene68298:CDS |
| GAAAATGAAAATAGTGGAGA+AGG | 0.537296 | 5.2:+26208840 | MS.gene68298:CDS |
| GAAATTTAGTTGTTATGTGT+TGG | 0.537435 | 5.2:+26209115 | MS.gene68298:CDS |
| CACATCAAATTAAGAGCAAG+TGG | 0.537917 | 5.2:+26209201 | MS.gene68298:CDS |
| GAAATAAACAAGAAGAGTCA+TGG | 0.542478 | 5.2:+26208504 | MS.gene68298:CDS |
| TACCAATTAAGCCAAGCGTT+AGG | 0.542546 | 5.2:+26208618 | MS.gene68298:CDS |
| ATTTGGTAGCTTCGAACGCA+AGG | 0.544069 | 5.2:-26208652 | None:intergenic |
| CTTGGCTTAATTGGTAGTTG+CGG | 0.547379 | 5.2:-26208611 | None:intergenic |
| ACAAATGTTGAAGAATTTGG+TGG | 0.548037 | 5.2:+26209077 | MS.gene68298:CDS |
| GGTGGGTCTGAAAGAGCACC+AGG | 0.550062 | 5.2:-26207286 | None:intergenic |
| AGCTAACACTTGAGCAACGA+TGG | 0.552335 | 5.2:+26208799 | MS.gene68298:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | 5.2:-26207310 | None:intergenic |
| GAAGGAAGGGAAAGAATCAA+GGG | 0.557983 | 5.2:+26207533 | MS.gene68298:CDS |
| ACCTGTTGATAATCATTGAA+GGG | 0.560629 | 5.2:-26208480 | None:intergenic |
| TACTATGTTATAAGAAGGAA+GGG | 0.561528 | 5.2:+26207520 | MS.gene68298:CDS |
| CTTCAGATGGAATTCCTCCT+GGG | 0.571560 | 5.2:+26208547 | MS.gene68298:CDS |
| AATCATTTGAACCTAACGCT+TGG | 0.573053 | 5.2:-26208629 | None:intergenic |
| GCAAAATCTATCGCTTCAGA+TGG | 0.576413 | 5.2:+26208534 | MS.gene68298:CDS |
| GGGAACAAGAAAGATTTGGA+TGG | 0.577539 | 5.2:+26209024 | MS.gene68298:CDS |
| AGTTGCCAAGGTTGAAGGAA+AGG | 0.583011 | 5.2:+26208896 | MS.gene68298:CDS |
| TAATGATTGTTCTGAATCAG+TGG | 0.585316 | 5.2:+26208692 | MS.gene68298:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.2:+26208731 | MS.gene68298:CDS |
| AATGAAAATAGTGGAGAAGG+TGG | 0.590819 | 5.2:+26208843 | MS.gene68298:CDS |
| GTGCAAGAACAATAGAGTCA+AGG | 0.591442 | 5.2:+26207381 | MS.gene68298:CDS |
| TAATCATTGAAGGGCTCCAA+AGG | 0.594177 | 5.2:-26208471 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | 5.2:-26207307 | None:intergenic |
| AAGGTCTTGGTTTAACATCA+CGG | 0.612277 | 5.2:-26208452 | None:intergenic |
| TTCACCTGCTGAAATAACGA+TGG | 0.612316 | 5.2:-26207434 | None:intergenic |
| GATTCAAACAGAAGTTGCCA+AGG | 0.618472 | 5.2:+26208884 | MS.gene68298:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.623216 | 5.2:+26208706 | MS.gene68298:CDS |
| TGGCTTAATTGGTAGTTGCG+GGG | 0.631094 | 5.2:-26208609 | None:intergenic |
| TTTCAGACCCACCACCATCA+GGG | 0.636827 | 5.2:+26207296 | MS.gene68298:CDS |
| AAAACTACAACATAAACATG+TGG | 0.651413 | 5.2:-26208427 | None:intergenic |
| GCTAACACTTGAGCAACGAT+GGG | 0.652461 | 5.2:+26208800 | MS.gene68298:CDS |
| ACATCAAATTAAGAGCAAGT+GGG | 0.665734 | 5.2:+26209202 | MS.gene68298:CDS |
| TAGTAGCGATTAGAAGACAA+TGG | 0.682657 | 5.2:-26207502 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAACAAAATCAATTATA+AGG | + | chr5.2:26207914-26207933 | MS.gene68298:intron | 10.0% |
| !! | AAAATTGAAAAGTTGAAATT+TGG | - | chr5.2:26208672-26208691 | None:intergenic | 15.0% |
| !! | AATAGATTAATAAGTAATAG+TGG | + | chr5.2:26208330-26208349 | MS.gene68298:intron | 15.0% |
| !! | TTAAACATTAAAAACAATCA+TGG | - | chr5.2:26207899-26207918 | None:intergenic | 15.0% |
| !! | ACAAAATCAATTATAAGGTT+TGG | + | chr5.2:26207919-26207938 | MS.gene68298:intron | 20.0% |
| !! | TCTTTCGTTGTTAAAAATTA+AGG | - | chr5.2:26207721-26207740 | None:intergenic | 20.0% |
| !! | TGAAATAGATGCTTAAATTT+AGG | - | chr5.2:26208095-26208114 | None:intergenic | 20.0% |
| !!! | TTATAGTTTTGTCAAAATTG+TGG | + | chr5.2:26208245-26208264 | MS.gene68298:intron | 20.0% |
| !!! | TTTTCCCGAAAATTAAATTT+GGG | + | chr5.2:26207755-26207774 | MS.gene68298:intron | 20.0% |
| !!! | TTTTTCCCGAAAATTAAATT+TGG | + | chr5.2:26207754-26207773 | MS.gene68298:intron | 20.0% |
| ! | AAAACTACAACATAAACATG+TGG | - | chr5.2:26208430-26208449 | None:intergenic | 25.0% |
| ! | AAGTTATTCATTGAGAAGAA+TGG | + | chr5.2:26209142-26209161 | MS.gene68298:CDS | 25.0% |
| ! | AAGTTATTGAAGGAATGAAA+TGG | + | chr5.2:26209003-26209022 | MS.gene68298:CDS | 25.0% |
| ! | ACATTGTCTCAATATATCAT+TGG | + | chr5.2:26207864-26207883 | MS.gene68298:intron | 25.0% |
| ! | AGTTATTGAAGGAATGAAAT+GGG | + | chr5.2:26209004-26209023 | MS.gene68298:CDS | 25.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5.2:26207322-26207341 | None:intergenic | 25.0% |
| ! | GAAATTTAGTTGTTATGTGT+TGG | + | chr5.2:26209115-26209134 | MS.gene68298:CDS | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5.2:26208749-26208768 | MS.gene68298:CDS | 25.0% |
| ! | GTAACAAATGTTGAAGAATT+TGG | + | chr5.2:26209074-26209093 | MS.gene68298:CDS | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5.2:26207520-26207539 | MS.gene68298:CDS | 25.0% |
| ! | TAGCATGAAATGGAATTTAT+GGG | - | chr5.2:26207689-26207708 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAATGAAAATAG+TGG | + | chr5.2:26208834-26208853 | MS.gene68298:CDS | 25.0% |
| ! | TCGTTGTTAAAAATTAAGGA+GGG | - | chr5.2:26207717-26207736 | None:intergenic | 25.0% |
| ! | TTAGCATGAAATGGAATTTA+TGG | - | chr5.2:26207690-26207709 | None:intergenic | 25.0% |
| ! | TTCGTTGTTAAAAATTAAGG+AGG | - | chr5.2:26207718-26207737 | None:intergenic | 25.0% |
| ! | TTTCCCGAAAATTAAATTTG+GGG | + | chr5.2:26207756-26207775 | MS.gene68298:intron | 25.0% |
| !! | AAACATGCGCTAAAATTTTA+AGG | + | chr5.2:26208305-26208324 | MS.gene68298:intron | 25.0% |
| !! | AATTATAAGGTTTGGTCTAA+TGG | + | chr5.2:26207927-26207946 | MS.gene68298:intron | 25.0% |
| !! | AGATGCTTAAATTTAGGATT+AGG | - | chr5.2:26208089-26208108 | None:intergenic | 25.0% |
| !! | ATGCTTAAATTTAGGATTAG+GGG | - | chr5.2:26208087-26208106 | None:intergenic | 25.0% |
| !! | ATGGTTAAATTTTTGTTCTG+AGG | - | chr5.2:26207418-26207437 | None:intergenic | 25.0% |
| !! | GATGCTTAAATTTAGGATTA+GGG | - | chr5.2:26208088-26208107 | None:intergenic | 25.0% |
| !! | TGGTTAAATTTTTGTTCTGA+GGG | - | chr5.2:26207417-26207436 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+TGG | + | chr5.2:26207324-26207343 | MS.gene68298:CDS | 25.0% |
| !!! | AATCCCCCAAATTTAATTTT+CGG | - | chr5.2:26207763-26207782 | None:intergenic | 25.0% |
| AAATGGGAACAAGAAAGATT+TGG | + | chr5.2:26209020-26209039 | MS.gene68298:CDS | 30.0% | |
| ACAAATGTTGAAGAATTTGG+TGG | + | chr5.2:26209077-26209096 | MS.gene68298:CDS | 30.0% | |
| ACATCAAATTAAGAGCAAGT+GGG | + | chr5.2:26209202-26209221 | MS.gene68298:CDS | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5.2:26207515-26207534 | MS.gene68298:CDS | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5.2:26207519-26207538 | MS.gene68298:CDS | 30.0% | |
| GAAATAAACAAGAAGAGTCA+TGG | + | chr5.2:26208504-26208523 | MS.gene68298:CDS | 30.0% | |
| GAGAAGAATGGATAAAAGTT+TGG | + | chr5.2:26209154-26209173 | MS.gene68298:CDS | 30.0% | |
| TTCCCGAAAATTAAATTTGG+GGG | + | chr5.2:26207757-26207776 | MS.gene68298:intron | 30.0% | |
| TTGAGTTTGGAAGTTATTGA+AGG | + | chr5.2:26208993-26209012 | MS.gene68298:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.2:26208731-26208750 | MS.gene68298:CDS | 30.0% | |
| ! | AATTTGGTGGAACAAACATA+TGG | + | chr5.2:26209090-26209109 | MS.gene68298:CDS | 30.0% |
| ! | GAAAATGAAAATAGTGGAGA+AGG | + | chr5.2:26208840-26208859 | MS.gene68298:CDS | 30.0% |
| ! | GACAATGGTTGATTTAATAC+TGG | - | chr5.2:26207490-26207509 | None:intergenic | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.2:26208930-26208949 | MS.gene68298:CDS | 30.0% |
| ! | TAATGATTGTTCTGAATCAG+TGG | + | chr5.2:26208692-26208711 | MS.gene68298:CDS | 30.0% |
| ! | TGTTTGGGATGAAAATAGAT+TGG | + | chr5.2:26208923-26208942 | MS.gene68298:CDS | 30.0% |
| ! | TTAAATTTAGGATTAGGGGA+AGG | - | chr5.2:26208083-26208102 | None:intergenic | 30.0% |
| !! | AACCTGTTGATAATCATTGA+AGG | - | chr5.2:26208484-26208503 | None:intergenic | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5.2:26208483-26208502 | None:intergenic | 30.0% |
| !! | ATCCCCCAAATTTAATTTTC+GGG | - | chr5.2:26207762-26207781 | None:intergenic | 30.0% |
| !!! | AAATTTTTGTTCTGAGGGAA+AGG | - | chr5.2:26207412-26207431 | None:intergenic | 30.0% |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5.2:26208818-26208837 | MS.gene68298:CDS | 30.0% |
| AAAGATTTGGATGGAATGCT+GGG | + | chr5.2:26209033-26209052 | MS.gene68298:CDS | 35.0% | |
| AACCTCAAAAAACACTAGCA+TGG | - | chr5.2:26207993-26208012 | None:intergenic | 35.0% | |
| AAGCGAAGAAAACTATACGT+TGG | - | chr5.2:26207590-26207609 | None:intergenic | 35.0% | |
| AAGGTCTTGGTTTAACATCA+CGG | - | chr5.2:26208455-26208474 | None:intergenic | 35.0% | |
| AATCATTTGAACCTAACGCT+TGG | - | chr5.2:26208632-26208651 | None:intergenic | 35.0% | |
| AATGGTAAAAAGACAGGCTT+TGG | + | chr5.2:26207945-26207964 | MS.gene68298:intron | 35.0% | |
| ACACTAGCATGGTTTAAACT+CGG | - | chr5.2:26207982-26208001 | None:intergenic | 35.0% | |
| AGCGAAGAAAACTATACGTT+GGG | - | chr5.2:26207589-26207608 | None:intergenic | 35.0% | |
| CACATCAAATTAAGAGCAAG+TGG | + | chr5.2:26209201-26209220 | MS.gene68298:CDS | 35.0% | |
| CCAAAGCACATAATATTTCC+TGG | - | chr5.2:26208051-26208070 | None:intergenic | 35.0% | |
| CCAGGAAATATTATGTGCTT+TGG | + | chr5.2:26208048-26208067 | MS.gene68298:intron | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.2:26208735-26208754 | MS.gene68298:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.2:26208738-26208757 | None:intergenic | 35.0% | |
| CGATGAGTTTGGAAAAAGAA+AGG | + | chr5.2:26208194-26208213 | MS.gene68298:intron | 35.0% | |
| GAACATAGCTTCTTCACTTA+CGG | - | chr5.2:26207464-26207483 | None:intergenic | 35.0% | |
| GAGGGTTAATTAGCATGAAA+TGG | - | chr5.2:26207699-26207718 | None:intergenic | 35.0% | |
| GGTTCAATGAATACTCACAA+AGG | - | chr5.2:26208030-26208049 | None:intergenic | 35.0% | |
| TAGTACAAGTTCAAAGGAAG+AGG | + | chr5.2:26208398-26208417 | MS.gene68298:CDS | 35.0% | |
| TAGTAGCGATTAGAAGACAA+TGG | - | chr5.2:26207505-26207524 | None:intergenic | 35.0% | |
| TCCATGTACAAAAAGAATCC+TGG | + | chr5.2:26207268-26207287 | MS.gene68298:CDS | 35.0% | |
| TGATGTTAAACCAAGACCTT+TGG | + | chr5.2:26208455-26208474 | MS.gene68298:CDS | 35.0% | |
| TGGTCTAATGGTAAAAAGAC+AGG | + | chr5.2:26207939-26207958 | MS.gene68298:intron | 35.0% | |
| TTGTGAGTATTCATTGAACC+AGG | + | chr5.2:26208030-26208049 | MS.gene68298:intron | 35.0% | |
| ! | AATGAAAATAGTGGAGAAGG+TGG | + | chr5.2:26208843-26208862 | MS.gene68298:CDS | 35.0% |
| ! | ACCAGGATTCTTTTTGTACA+TGG | - | chr5.2:26207272-26207291 | None:intergenic | 35.0% |
| ! | TTAACCATCGTTATTTCAGC+AGG | + | chr5.2:26207430-26207449 | MS.gene68298:CDS | 35.0% |
| !! | ATTTTAGCGCATGTTTGAGT+TGG | - | chr5.2:26208301-26208320 | None:intergenic | 35.0% |
| !! | TTTTAGCGCATGTTTGAGTT+GGG | - | chr5.2:26208300-26208319 | None:intergenic | 35.0% |
| !!! | AACCATGCTAGTGTTTTTTG+AGG | + | chr5.2:26207988-26208007 | MS.gene68298:intron | 35.0% |
| !!! | ATGCTAGTGTTTTTTGAGGT+TGG | + | chr5.2:26207992-26208011 | MS.gene68298:intron | 35.0% |
| !!! | GTTTTGATTGTCGATGAGTT+TGG | + | chr5.2:26208183-26208202 | MS.gene68298:intron | 35.0% |
| AACCTAACGCTTGGCTTAAT+TGG | - | chr5.2:26208623-26208642 | None:intergenic | 40.0% | |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.2:26208706-26208725 | MS.gene68298:CDS | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | + | chr5.2:26208557-26208576 | MS.gene68298:CDS | 40.0% | |
| AGAAGGAAGGGAAAGAATCA+AGG | + | chr5.2:26207532-26207551 | MS.gene68298:CDS | 40.0% | |
| AGACAATGTTTCGATGATCG+TGG | - | chr5.2:26207853-26207872 | None:intergenic | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | + | chr5.2:26208392-26208411 | MS.gene68298:CDS | 40.0% | |
| CCTTTGAACTTGTACTAGCT+TGG | - | chr5.2:26208395-26208414 | None:intergenic | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | + | chr5.2:26208565-26208584 | MS.gene68298:CDS | 40.0% | |
| GAAAGATTTGGATGGAATGC+TGG | + | chr5.2:26209032-26209051 | MS.gene68298:CDS | 40.0% | |
| GAAGGAAGGGAAAGAATCAA+GGG | + | chr5.2:26207533-26207552 | MS.gene68298:CDS | 40.0% | |
| GATTCAAACAGAAGTTGCCA+AGG | + | chr5.2:26208884-26208903 | MS.gene68298:CDS | 40.0% | |
| GCAAAATCTATCGCTTCAGA+TGG | + | chr5.2:26208534-26208553 | MS.gene68298:CDS | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5.2:26208479-26208498 | MS.gene68298:CDS | 40.0% | |
| GCTCAAACTTACTCTTGCTT+TGG | + | chr5.2:26207355-26207374 | MS.gene68298:CDS | 40.0% | |
| GGGAACAAGAAAGATTTGGA+TGG | + | chr5.2:26209024-26209043 | MS.gene68298:CDS | 40.0% | |
| GTGCAAGAACAATAGAGTCA+AGG | + | chr5.2:26207381-26207400 | MS.gene68298:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5.2:26207313-26207332 | None:intergenic | 40.0% | |
| TAATCATTGAAGGGCTCCAA+AGG | - | chr5.2:26208474-26208493 | None:intergenic | 40.0% | |
| TACCAATTAAGCCAAGCGTT+AGG | + | chr5.2:26208618-26208637 | MS.gene68298:CDS | 40.0% | |
| TTCACCTGCTGAAATAACGA+TGG | - | chr5.2:26207437-26207456 | None:intergenic | 40.0% | |
| TTGAAGGAAAGGATGCTGTT+TGG | + | chr5.2:26208907-26208926 | MS.gene68298:CDS | 40.0% | |
| ! | AGTGTTGAAGAGAGAAGTGT+TGG | + | chr5.2:26208969-26208988 | MS.gene68298:CDS | 40.0% |
| ! | CTTGGCTTAATTGGTAGTTG+CGG | - | chr5.2:26208614-26208633 | None:intergenic | 40.0% |
| ! | GAGATTGGTTGAGTCATGAT+AGG | - | chr5.2:26208274-26208293 | None:intergenic | 40.0% |
| ! | TGAAGGAAAGGATGCTGTTT+GGG | + | chr5.2:26208908-26208927 | MS.gene68298:CDS | 40.0% |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | + | chr5.2:26208699-26208718 | MS.gene68298:CDS | 40.0% |
| ! | TTGGCTTAATTGGTAGTTGC+GGG | - | chr5.2:26208613-26208632 | None:intergenic | 40.0% |
| !! | GAGAAGTGTTGGATTGAGTT+TGG | + | chr5.2:26208980-26208999 | MS.gene68298:CDS | 40.0% |
| !! | GATTGGTTGATGGAGTGTTA+TGG | + | chr5.2:26208940-26208959 | MS.gene68298:CDS | 40.0% |
| ACAGAAGTTGCCAAGGTTGA+AGG | + | chr5.2:26208891-26208910 | MS.gene68298:CDS | 45.0% | |
| AGCATCCTTTCCTTCAACCT+TGG | - | chr5.2:26208904-26208923 | None:intergenic | 45.0% | |
| AGCTAACACTTGAGCAACGA+TGG | + | chr5.2:26208799-26208818 | MS.gene68298:CDS | 45.0% | |
| AGTTGCCAAGGTTGAAGGAA+AGG | + | chr5.2:26208896-26208915 | MS.gene68298:CDS | 45.0% | |
| ATTTGGATGGAATGCTGGGA+AGG | + | chr5.2:26209037-26209056 | MS.gene68298:CDS | 45.0% | |
| CCTGGGTTATTGAGGGAAAA+AGG | + | chr5.2:26208564-26208583 | MS.gene68298:CDS | 45.0% | |
| CTTCAGATGGAATTCCTCCT+GGG | + | chr5.2:26208547-26208566 | MS.gene68298:CDS | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | + | chr5.2:26208556-26208575 | MS.gene68298:CDS | 45.0% | |
| GCTAACACTTGAGCAACGAT+GGG | + | chr5.2:26208800-26208819 | MS.gene68298:CDS | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | + | chr5.2:26208568-26208587 | MS.gene68298:CDS | 45.0% | |
| TCGATGATCGTGGTTCAACT+AGG | - | chr5.2:26207843-26207862 | None:intergenic | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5.2:26209038-26209057 | MS.gene68298:CDS | 45.0% | |
| ! | ATTTGGTAGCTTCGAACGCA+AGG | - | chr5.2:26208655-26208674 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | - | chr5.2:26208567-26208586 | None:intergenic | 45.0% |
| ! | TGGCTTAATTGGTAGTTGCG+GGG | - | chr5.2:26208612-26208631 | None:intergenic | 45.0% |
| ! | TTTTCCCTCAATAACCCAGG+AGG | - | chr5.2:26208564-26208583 | None:intergenic | 45.0% |
| !! | AAGACAGGCTTTGGACTTAG+AGG | + | chr5.2:26207954-26207973 | MS.gene68298:intron | 45.0% |
| !! | GTTTGAGTTGGGTGTGAGAT+TGG | - | chr5.2:26208289-26208308 | None:intergenic | 45.0% |
| !! | TTAAATAAATTGAATATTAT+AGG | + | chr5.2:26207636-26207655 | MS.gene68298:intron | 5.0% |
| CTTGAATTTGGCCCTGATGG+TGG | - | chr5.2:26207310-26207329 | None:intergenic | 50.0% | |
| GCTTCAGATGGAATTCCTCC+TGG | + | chr5.2:26208546-26208565 | MS.gene68298:CDS | 50.0% | |
| TTGAAGGGCTCCAAAGGTCT+TGG | - | chr5.2:26208468-26208487 | None:intergenic | 50.0% | |
| TTTCAGACCCACCACCATCA+GGG | + | chr5.2:26207296-26207315 | MS.gene68298:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5.2:26207306-26207325 | None:intergenic | 50.0% |
| CTTTCAGACCCACCACCATC+AGG | + | chr5.2:26207295-26207314 | MS.gene68298:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5.2:26207307-26207326 | None:intergenic | 55.0% |
| !! | GGTGGGTCTGAAAGAGCACC+AGG | - | chr5.2:26207289-26207308 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 26207247 | 26209229 | 26207247 | ID=MS.gene68298 |
| chr5.2 | mRNA | 26207247 | 26209229 | 26207247 | ID=MS.gene68298.t1;Parent=MS.gene68298 |
| chr5.2 | exon | 26207247 | 26207554 | 26207247 | ID=MS.gene68298.t1.exon1;Parent=MS.gene68298.t1 |
| chr5.2 | CDS | 26207247 | 26207554 | 26207247 | ID=cds.MS.gene68298.t1;Parent=MS.gene68298.t1 |
| chr5.2 | exon | 26208392 | 26209229 | 26208392 | ID=MS.gene68298.t1.exon2;Parent=MS.gene68298.t1 |
| chr5.2 | CDS | 26208392 | 26209229 | 26208392 | ID=cds.MS.gene68298.t1;Parent=MS.gene68298.t1 |
| Gene Sequence |
| Protein sequence |
