Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042700.t1 | XP_013452693.1 | 97 | 399 | 12 | 0 | 1 | 399 | 1 | 399 | 3.40E-229 | 803.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042700.t1 | A0A072UB96 | 97.0 | 399 | 12 | 0 | 1 | 399 | 1 | 399 | 2.4e-229 | 803.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68297 | MS.gene042700 | PPI |
| MS.gene027538 | MS.gene042700 | PPI |
| MS.gene45115 | MS.gene042700 | PPI |
| MS.gene053932 | MS.gene042700 | PPI |
| MS.gene027540 | MS.gene042700 | PPI |
| MS.gene43936 | MS.gene042700 | PPI |
| MS.gene027536 | MS.gene042700 | PPI |
| MS.gene027543 | MS.gene042700 | PPI |
| MS.gene45117 | MS.gene042700 | PPI |
| MS.gene027534 | MS.gene042700 | PPI |
| MS.gene78745 | MS.gene042700 | PPI |
| MS.gene027537 | MS.gene042700 | PPI |
| MS.gene68298 | MS.gene042700 | PPI |
| MS.gene68295 | MS.gene042700 | PPI |
| MS.gene045965 | MS.gene042700 | PPI |
| MS.gene43935 | MS.gene042700 | PPI |
| MS.gene45114 | MS.gene042700 | PPI |
| MS.gene027544 | MS.gene042700 | PPI |
| MS.gene45119 | MS.gene042700 | PPI |
| MS.gene45120 | MS.gene042700 | PPI |
| MS.gene45116 | MS.gene042700 | PPI |
| MS.gene68293 | MS.gene042700 | PPI |
| MS.gene027539 | MS.gene042700 | PPI |
| MS.gene027535 | MS.gene042700 | PPI |
| MS.gene042700 | MS.gene78745 | PPI |
| MS.gene45118 | MS.gene042700 | PPI |
| MS.gene68296 | MS.gene042700 | PPI |
| MS.gene68292 | MS.gene042700 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042700.t1 | MTR_6g472110 | 96.992 | 399 | 12 | 0 | 1 | 399 | 1 | 399 | 0.0 | 810 |
| MS.gene042700.t1 | MTR_5g035690 | 50.739 | 406 | 173 | 12 | 1 | 399 | 1 | 386 | 1.11e-129 | 378 |
| MS.gene042700.t1 | MTR_5g035665 | 50.250 | 400 | 177 | 9 | 1 | 399 | 1 | 379 | 6.17e-127 | 371 |
| MS.gene042700.t1 | MTR_5g035750 | 49.010 | 404 | 184 | 10 | 1 | 399 | 1 | 387 | 1.86e-124 | 365 |
| MS.gene042700.t1 | MTR_5g035760 | 49.127 | 401 | 181 | 11 | 1 | 399 | 1 | 380 | 3.62e-120 | 353 |
| MS.gene042700.t1 | MTR_5g035670 | 48.500 | 400 | 186 | 8 | 1 | 399 | 1 | 381 | 1.35e-119 | 352 |
| MS.gene042700.t1 | MTR_6g016660 | 41.809 | 409 | 217 | 10 | 1 | 399 | 1 | 398 | 5.32e-102 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042700.t1 | AT1G13480 | 43.532 | 402 | 209 | 8 | 1 | 399 | 1 | 387 | 8.74e-103 | 310 |
| MS.gene042700.t1 | AT1G13520 | 44.307 | 404 | 203 | 10 | 1 | 399 | 1 | 387 | 2.85e-102 | 308 |
| MS.gene042700.t1 | AT1G13530 | 44.802 | 404 | 199 | 10 | 1 | 399 | 1 | 385 | 1.89e-98 | 298 |
| MS.gene042700.t1 | AT1G13500 | 45.098 | 408 | 193 | 12 | 1 | 399 | 1 | 386 | 5.46e-93 | 285 |
| MS.gene042700.t1 | AT1G13490 | 42.680 | 403 | 206 | 8 | 1 | 399 | 1 | 382 | 1.54e-91 | 281 |
| MS.gene042700.t1 | AT1G13470 | 44.554 | 404 | 193 | 14 | 1 | 399 | 1 | 378 | 5.90e-91 | 279 |
| MS.gene042700.t1 | AT1G13490 | 42.040 | 402 | 191 | 9 | 1 | 399 | 1 | 363 | 2.84e-86 | 266 |
| MS.gene042700.t1 | AT1G13540 | 40.686 | 408 | 206 | 14 | 1 | 399 | 1 | 381 | 3.94e-86 | 267 |
| MS.gene042700.t1 | AT1G61600 | 38.372 | 430 | 225 | 11 | 1 | 399 | 1 | 421 | 1.32e-83 | 261 |
| MS.gene042700.t1 | AT1G13510 | 41.769 | 407 | 202 | 15 | 1 | 399 | 1 | 380 | 1.71e-83 | 260 |
| MS.gene042700.t1 | AT1G13550 | 39.109 | 404 | 219 | 9 | 1 | 396 | 1 | 385 | 3.29e-78 | 246 |
Find 87 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACCAAAACACCAGAATT+AGG | 0.174233 | 5.2:+45086252 | None:intergenic |
| AGAATTTGAAGGGACTAATA+AGG | 0.248217 | 5.2:-45084608 | MS.gene042700:CDS |
| TGATAATGATGATGGTAAAA+AGG | 0.249854 | 5.2:-45084875 | MS.gene042700:CDS |
| TCAAACACCATCATCAATTA+AGG | 0.264161 | 5.2:-45084501 | MS.gene042700:CDS |
| TTGAAACCAACATCTTGTTT+TGG | 0.266282 | 5.2:-45086216 | MS.gene042700:CDS |
| AGGCCCTAATTCTGGTGTTT+TGG | 0.301149 | 5.2:-45086256 | MS.gene042700:CDS |
| GTTATAGAGAAATTGAATTC+TGG | 0.308679 | 5.2:+45085051 | None:intergenic |
| CCACCAGAAGGCCCTAATTC+TGG | 0.339823 | 5.2:-45086264 | MS.gene042700:CDS |
| CTGATATCTAAAGGATGAAT+TGG | 0.361943 | 5.2:+45085273 | None:intergenic |
| ACACCAGAATTAGGGCCTTC+TGG | 0.363127 | 5.2:+45086261 | None:intergenic |
| GAAATTGAATTCTGGTTTCC+CGG | 0.363971 | 5.2:+45085059 | None:intergenic |
| AGATTACACTAGAGCAGAAA+TGG | 0.366742 | 5.2:-45084915 | MS.gene042700:CDS |
| ATCATCAATTAAGGAGCAAA+TGG | 0.366805 | 5.2:-45084492 | MS.gene042700:CDS |
| CAGGAGAGGGTTGGATGGCT+TGG | 0.376011 | 5.2:-45084667 | MS.gene042700:CDS |
| GAACAATGTGGGTTTGAGTA+TGG | 0.379078 | 5.2:-45084716 | MS.gene042700:CDS |
| GGGAGAGTACCATGAAGTTA+AGG | 0.382423 | 5.2:-45086190 | MS.gene042700:CDS |
| TACTATGTCATACATCTTCA+TGG | 0.383281 | 5.2:-45086039 | MS.gene042700:CDS |
| CCCTTCATGTTTATCAAAGA+AGG | 0.391686 | 5.2:-45084985 | MS.gene042700:CDS |
| AAAGTGTTGTTGTGGGAAAA+TGG | 0.398385 | 5.2:-45085014 | MS.gene042700:CDS |
| ACATCAAGTGATTCAAGTCT+TGG | 0.402196 | 5.2:-45085114 | MS.gene042700:CDS |
| GGAGAGTACCATGAAGTTAA+GGG | 0.402330 | 5.2:-45086189 | MS.gene042700:CDS |
| GTAGAAGCAAAGTTACATTA+AGG | 0.416879 | 5.2:-45085218 | MS.gene042700:CDS |
| TTACCAAAACACCAGAATTA+GGG | 0.422217 | 5.2:+45086253 | None:intergenic |
| AAAGAAGTGGTTGTAATTGC+TGG | 0.422244 | 5.2:-45084820 | MS.gene042700:CDS |
| TGAGAGAATGAAGTGGGAGC+AGG | 0.430736 | 5.2:-45084686 | MS.gene042700:CDS |
| GCTAAATCTGTTGCTGAAGA+TGG | 0.430828 | 5.2:-45085183 | MS.gene042700:CDS |
| GGAATTTCAAGTTAAGAAAG+TGG | 0.435170 | 5.2:-45084632 | MS.gene042700:CDS |
| AAGGCAAACCCTTAACTTCA+TGG | 0.449187 | 5.2:+45086181 | None:intergenic |
| AAGAAAGTGGAAGAATTTGA+AGG | 0.451778 | 5.2:-45084619 | MS.gene042700:CDS |
| GAATGAAGTGGGAGCAGGAG+AGG | 0.455395 | 5.2:-45084681 | MS.gene042700:CDS |
| TTTAATAGTATCAATAATGT+TGG | 0.466830 | 5.2:-45084745 | MS.gene042700:CDS |
| GTGGATGATTCCCTCCGTGC+CGG | 0.471168 | 5.2:-45085078 | MS.gene042700:CDS |
| ATTTGCTCCTTAATTGATGA+TGG | 0.471685 | 5.2:+45084494 | None:intergenic |
| GACAATGGCTGATTAAGAAC+TGG | 0.473764 | 5.2:+45086072 | None:intergenic |
| AATGAAGTGGGAGCAGGAGA+GGG | 0.474655 | 5.2:-45084680 | MS.gene042700:CDS |
| GACTTCTTGTACAAAGAAAG+AGG | 0.484167 | 5.2:+45086309 | None:intergenic |
| GAATTTGAAGGGACTAATAA+GGG | 0.485288 | 5.2:-45084607 | MS.gene042700:CDS |
| GAGAGGGTTGGATGGCTTGG+TGG | 0.489813 | 5.2:-45084664 | MS.gene042700:CDS |
| TGCTGGGTGGGAAGCTATGA+TGG | 0.490086 | 5.2:-45084803 | MS.gene042700:CDS |
| TATTTGTCACTGATATCTAA+AGG | 0.492371 | 5.2:+45085264 | None:intergenic |
| TCAAGTCTTGGAGAAGCATC+AGG | 0.497137 | 5.2:-45085102 | MS.gene042700:CDS |
| TCCTTCTTTGATAAACATGA+AGG | 0.498261 | 5.2:+45084984 | None:intergenic |
| ATGTATGACATAGTATTGAT+TGG | 0.499829 | 5.2:+45086047 | None:intergenic |
| CATCTTCATGGCAAGAAAAG+AGG | 0.503885 | 5.2:-45086027 | MS.gene042700:CDS |
| TGGATGATTCCCTCCGTGCC+GGG | 0.510450 | 5.2:-45085077 | MS.gene042700:CDS |
| TTTGTTATAAAGAGATTGGA+TGG | 0.511821 | 5.2:-45084547 | MS.gene042700:CDS |
| AAGTGGGAGCAGGAGAGGGT+TGG | 0.525230 | 5.2:-45084676 | MS.gene042700:CDS |
| TTCTGGTTTCCCGGCACGGA+GGG | 0.529376 | 5.2:+45085068 | None:intergenic |
| CTGATTAAGAACTGGAATGA+AGG | 0.530740 | 5.2:+45086080 | None:intergenic |
| GAATTAGGGCCTTCTGGTGG+AGG | 0.531123 | 5.2:+45086267 | None:intergenic |
| TGAATTCTGGTTTCCCGGCA+CGG | 0.533001 | 5.2:+45085064 | None:intergenic |
| GTTGGAGAAAAGAACAATGT+GGG | 0.534106 | 5.2:-45084727 | MS.gene042700:CDS |
| ATGGCTTGGTGGGAAAGAAA+AGG | 0.534199 | 5.2:-45084653 | MS.gene042700:CDS |
| TCATCAATTAAGGAGCAAAT+GGG | 0.535072 | 5.2:-45084491 | MS.gene042700:CDS |
| AGCTATGATGGATAATAAGA+TGG | 0.539308 | 5.2:-45084791 | MS.gene042700:CDS |
| AGAGGGTTGGATGGCTTGGT+GGG | 0.548797 | 5.2:-45084663 | MS.gene042700:CDS |
| CCCAACCCAAAACAAGATGT+TGG | 0.552661 | 5.2:+45086210 | None:intergenic |
| GATTACACTAGAGCAGAAAT+GGG | 0.553713 | 5.2:-45084914 | MS.gene042700:CDS |
| TTTGTACAAGAAGTCTGAAG+AGG | 0.555051 | 5.2:-45086301 | MS.gene042700:CDS |
| GGGAGCAGGAGAGGGTTGGA+TGG | 0.555243 | 5.2:-45084672 | MS.gene042700:CDS |
| CTGATCTATAAAACAGCTCA+AGG | 0.565699 | 5.2:+45086142 | None:intergenic |
| ATCTTCATGGCAAGAAAAGA+GGG | 0.569344 | 5.2:-45086026 | MS.gene042700:intron |
| AGTGGTTGTAATTGCTGGGT+GGG | 0.569655 | 5.2:-45084815 | MS.gene042700:CDS |
| TTGAAGGGACTAATAAGGGA+TGG | 0.569939 | 5.2:-45084603 | MS.gene042700:CDS |
| TGTTCAGAAAGTGTTGTTGT+GGG | 0.572278 | 5.2:-45085021 | MS.gene042700:CDS |
| AGCAAAGTTACATTAAGGAG+TGG | 0.577098 | 5.2:-45085213 | MS.gene042700:CDS |
| AAAATTTGGATGTTATGTGT+TGG | 0.578946 | 5.2:-45084578 | MS.gene042700:CDS |
| AGAAAGTGGAAGAATTTGAA+GGG | 0.580351 | 5.2:-45084618 | MS.gene042700:CDS |
| TATGACATAGTATTGATTGG+AGG | 0.584322 | 5.2:+45086050 | None:intergenic |
| CCTTCTTTGATAAACATGAA+GGG | 0.590946 | 5.2:+45084985 | None:intergenic |
| CTGAAGATGGATACCCTCCA+AGG | 0.601083 | 5.2:-45085170 | MS.gene042700:CDS |
| TGTTGGAGAAAAGAACAATG+TGG | 0.611466 | 5.2:-45084728 | MS.gene042700:CDS |
| CAATAGTTGAGAGAATGAAG+TGG | 0.612002 | 5.2:-45084693 | MS.gene042700:CDS |
| TAACTCAAAGGATGAAGATG+TGG | 0.613245 | 5.2:-45085331 | MS.gene042700:CDS |
| ATGTTCAGAAAGTGTTGTTG+TGG | 0.614049 | 5.2:-45085022 | MS.gene042700:CDS |
| GGAAGCATACAATAACTCAA+AGG | 0.617419 | 5.2:-45085343 | MS.gene042700:CDS |
| CTCTCATTACCTCCACCAGA+AGG | 0.619265 | 5.2:-45086276 | MS.gene042700:CDS |
| AATAGTTGAGAGAATGAAGT+GGG | 0.629735 | 5.2:-45084692 | MS.gene042700:CDS |
| AAGAAGTGGTTGTAATTGCT+GGG | 0.631620 | 5.2:-45084819 | MS.gene042700:CDS |
| TATAGAATATGTATGTGACT+AGG | 0.634027 | 5.2:-45086332 | None:intergenic |
| TAGTATTGATTGGAGGACAA+TGG | 0.649023 | 5.2:+45086057 | None:intergenic |
| CCAGAATTAGGGCCTTCTGG+TGG | 0.656141 | 5.2:+45086264 | None:intergenic |
| TCTTGGAGAAGCATCAGGTG+TGG | 0.658129 | 5.2:-45085097 | MS.gene042700:CDS |
| AATGTAACTTTGCTTCTACG+AGG | 0.675300 | 5.2:+45085222 | None:intergenic |
| AAGTGGTTGTAATTGCTGGG+TGG | 0.699538 | 5.2:-45084816 | MS.gene042700:CDS |
| ATTCTGGTTTCCCGGCACGG+AGG | 0.720641 | 5.2:+45085067 | None:intergenic |
| ATGATGGTGTTTGAAAGCAT+AGG | 0.724364 | 5.2:+45084510 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATAGTATCAATAATGT+TGG | - | chr5.2:45086065-45086084 | MS.gene042700:CDS | 15.0% |
| !!! | TCATGTCAAAAATTTAAAAT+TGG | + | chr5.2:45085380-45085399 | None:intergenic | 15.0% |
| !! | AGTATTATACTGATGTAATT+TGG | - | chr5.2:45085430-45085449 | MS.gene042700:intron | 20.0% |
| !!! | AATTTAAAATTGGTTCAACA+CGG | + | chr5.2:45085370-45085389 | None:intergenic | 20.0% |
| !!! | TAAATTTTTCCTCTGTTATT+TGG | + | chr5.2:45085037-45085056 | None:intergenic | 20.0% |
| !!! | TTTCTAGTATTGTAGTATAA+GGG | - | chr5.2:45085150-45085169 | MS.gene042700:CDS | 20.0% |
| !!! | TTTTCTAGTATTGTAGTATA+AGG | - | chr5.2:45085149-45085168 | MS.gene042700:CDS | 20.0% |
| ! | AAAATTTGGATGTTATGTGT+TGG | - | chr5.2:45086232-45086251 | MS.gene042700:CDS | 25.0% |
| ! | AATAAGGGATGGAAAAAATT+TGG | - | chr5.2:45086218-45086237 | MS.gene042700:CDS | 25.0% |
| ! | AGTACTATATAACTCACATT+TGG | + | chr5.2:45084883-45084902 | None:intergenic | 25.0% |
| ! | GTTATAGAGAAATTGAATTC+TGG | + | chr5.2:45085762-45085781 | None:intergenic | 25.0% |
| ! | TATATAGTACTACTGACATA+AGG | - | chr5.2:45084892-45084911 | MS.gene042700:CDS | 25.0% |
| ! | TATTTGTCACTGATATCTAA+AGG | + | chr5.2:45085549-45085568 | None:intergenic | 25.0% |
| ! | TGTTAGATTTGAATACAAGT+TGG | - | chr5.2:45085285-45085304 | MS.gene042700:CDS | 25.0% |
| !! | ACTTTGAATTTCGATGATTT+TGG | - | chr5.2:45084943-45084962 | MS.gene042700:CDS | 25.0% |
| !! | TTTGTTATAAAGAGATTGGA+TGG | - | chr5.2:45086263-45086282 | MS.gene042700:CDS | 25.0% |
| !!! | AATTTGGTTTTTCTTCTGTA+GGG | - | chr5.2:45085446-45085465 | MS.gene042700:intron | 25.0% |
| !!! | ATGTATGACATAGTATTGAT+TGG | + | chr5.2:45084766-45084785 | None:intergenic | 25.0% |
| !!! | GACTTTTGTTATAAAGAGAT+TGG | - | chr5.2:45086259-45086278 | MS.gene042700:CDS | 25.0% |
| !!! | GATAATGATGATGGTAAAAA+GGG | - | chr5.2:45085936-45085955 | MS.gene042700:intron | 25.0% |
| !!! | TAATTTGGTTTTTCTTCTGT+AGG | - | chr5.2:45085445-45085464 | MS.gene042700:intron | 25.0% |
| !!! | TGATAATGATGATGGTAAAA+AGG | - | chr5.2:45085935-45085954 | MS.gene042700:intron | 25.0% |
| !!! | TTTTCATGTGATAATGATGA+TGG | - | chr5.2:45085927-45085946 | MS.gene042700:intron | 25.0% |
| AAGAAAGTGGAAGAATTTGA+AGG | - | chr5.2:45086191-45086210 | MS.gene042700:CDS | 30.0% | |
| AATAGTTGAGAGAATGAAGT+GGG | - | chr5.2:45086118-45086137 | MS.gene042700:CDS | 30.0% | |
| AGAAAGTGGAAGAATTTGAA+GGG | - | chr5.2:45086192-45086211 | MS.gene042700:CDS | 30.0% | |
| AGAATTTGAAGGGACTAATA+AGG | - | chr5.2:45086202-45086221 | MS.gene042700:CDS | 30.0% | |
| ATCATCAATTAAGGAGCAAA+TGG | - | chr5.2:45086318-45086337 | MS.gene042700:CDS | 30.0% | |
| ATTACCAAAACACCAGAATT+AGG | + | chr5.2:45084561-45084580 | None:intergenic | 30.0% | |
| ATTTGCTCCTTAATTGATGA+TGG | + | chr5.2:45086319-45086338 | None:intergenic | 30.0% | |
| CCTTCTTTGATAAACATGAA+GGG | + | chr5.2:45085828-45085847 | None:intergenic | 30.0% | |
| CTGACATAAGGTTGAAATAA+CGG | - | chr5.2:45084904-45084923 | MS.gene042700:CDS | 30.0% | |
| CTGATATCTAAAGGATGAAT+TGG | + | chr5.2:45085540-45085559 | None:intergenic | 30.0% | |
| GAATTTGAAGGGACTAATAA+GGG | - | chr5.2:45086203-45086222 | MS.gene042700:CDS | 30.0% | |
| GTAGAAGCAAAGTTACATTA+AGG | - | chr5.2:45085592-45085611 | MS.gene042700:intron | 30.0% | |
| TACTATGTCATACATCTTCA+TGG | - | chr5.2:45084771-45084790 | MS.gene042700:CDS | 30.0% | |
| TCAAACACCATCATCAATTA+AGG | - | chr5.2:45086309-45086328 | MS.gene042700:CDS | 30.0% | |
| TCATCAATTAAGGAGCAAAT+GGG | - | chr5.2:45086319-45086338 | MS.gene042700:CDS | 30.0% | |
| TCCTTCTTTGATAAACATGA+AGG | + | chr5.2:45085829-45085848 | None:intergenic | 30.0% | |
| TGACATAAGGTTGAAATAAC+GGG | - | chr5.2:45084905-45084924 | MS.gene042700:CDS | 30.0% | |
| TTAAACTTGATCATCAAAGC+AGG | - | chr5.2:45085054-45085073 | MS.gene042700:CDS | 30.0% | |
| TTACCAAAACACCAGAATTA+GGG | + | chr5.2:45084560-45084579 | None:intergenic | 30.0% | |
| TTCTACTTAAAAACCTTGGA+GGG | + | chr5.2:45085656-45085675 | None:intergenic | 30.0% | |
| ! | AAATAACGGGGAATATACTT+GGG | - | chr5.2:45084918-45084937 | MS.gene042700:CDS | 30.0% |
| !! | AGCTATGATGGATAATAAGA+TGG | - | chr5.2:45086019-45086038 | MS.gene042700:intron | 30.0% |
| !! | GGAATTTCAAGTTAAGAAAG+TGG | - | chr5.2:45086178-45086197 | MS.gene042700:CDS | 30.0% |
| !! | TATGACATAGTATTGATTGG+AGG | + | chr5.2:45084763-45084782 | None:intergenic | 30.0% |
| !! | TTGAAACCAACATCTTGTTT+TGG | - | chr5.2:45084594-45084613 | MS.gene042700:CDS | 30.0% |
| !!! | ATGTAGCTGAAAGTTTTTTG+TGG | - | chr5.2:45086042-45086061 | MS.gene042700:CDS | 30.0% |
| !!! | GACATCAACGTATTTTGATA+AGG | - | chr5.2:45084967-45084986 | MS.gene042700:CDS | 30.0% |
| !!! | TGAAACCAACATCTTGTTTT+GGG | - | chr5.2:45084595-45084614 | MS.gene042700:CDS | 30.0% |
| AAAGAAGTGGTTGTAATTGC+TGG | - | chr5.2:45085990-45086009 | MS.gene042700:intron | 35.0% | |
| AAGAAGTGGTTGTAATTGCT+GGG | - | chr5.2:45085991-45086010 | MS.gene042700:intron | 35.0% | |
| AATGTAACTTTGCTTCTACG+AGG | + | chr5.2:45085591-45085610 | None:intergenic | 35.0% | |
| ACATCAAGTGATTCAAGTCT+TGG | - | chr5.2:45085696-45085715 | MS.gene042700:intron | 35.0% | |
| AGATTACACTAGAGCAGAAA+TGG | - | chr5.2:45085895-45085914 | MS.gene042700:intron | 35.0% | |
| AGCAAAGTTACATTAAGGAG+TGG | - | chr5.2:45085597-45085616 | MS.gene042700:intron | 35.0% | |
| ATCTTCATGGCAAGAAAAGA+GGG | - | chr5.2:45084784-45084803 | MS.gene042700:CDS | 35.0% | |
| CAATAGTTGAGAGAATGAAG+TGG | - | chr5.2:45086117-45086136 | MS.gene042700:CDS | 35.0% | |
| CACCTTCTACTTAAAAACCT+TGG | + | chr5.2:45085660-45085679 | None:intergenic | 35.0% | |
| CCCTTCATGTTTATCAAAGA+AGG | - | chr5.2:45085825-45085844 | MS.gene042700:intron | 35.0% | |
| CTGATCTATAAAACAGCTCA+AGG | + | chr5.2:45084671-45084690 | None:intergenic | 35.0% | |
| CTGATTAAGAACTGGAATGA+AGG | + | chr5.2:45084733-45084752 | None:intergenic | 35.0% | |
| CTTCTACTTAAAAACCTTGG+AGG | + | chr5.2:45085657-45085676 | None:intergenic | 35.0% | |
| GAAAATCAAAGTCACTGAAG+CGG | - | chr5.2:45085008-45085027 | MS.gene042700:CDS | 35.0% | |
| GACATAAGGTTGAAATAACG+GGG | - | chr5.2:45084906-45084925 | MS.gene042700:CDS | 35.0% | |
| GACTTCTTGTACAAAGAAAG+AGG | + | chr5.2:45084504-45084523 | None:intergenic | 35.0% | |
| GATTACACTAGAGCAGAAAT+GGG | - | chr5.2:45085896-45085915 | MS.gene042700:intron | 35.0% | |
| GTTGGAGAAAAGAACAATGT+GGG | - | chr5.2:45086083-45086102 | MS.gene042700:CDS | 35.0% | |
| TAACTCAAAGGATGAAGATG+TGG | - | chr5.2:45085479-45085498 | MS.gene042700:intron | 35.0% | |
| TAACTCACATTTGGTTGAAC+TGG | + | chr5.2:45084874-45084893 | None:intergenic | 35.0% | |
| TGTTGGAGAAAAGAACAATG+TGG | - | chr5.2:45086082-45086101 | MS.gene042700:CDS | 35.0% | |
| TTGAAGTCTTGAACATGTCA+AGG | + | chr5.2:45085411-45085430 | None:intergenic | 35.0% | |
| TTTGTACAAGAAGTCTGAAG+AGG | - | chr5.2:45084509-45084528 | MS.gene042700:CDS | 35.0% | |
| ! | ATGATGGTGTTTGAAAGCAT+AGG | + | chr5.2:45086303-45086322 | None:intergenic | 35.0% |
| ! | GAAATAACGGGGAATATACT+TGG | - | chr5.2:45084917-45084936 | MS.gene042700:CDS | 35.0% |
| ! | GGAAGCATACAATAACTCAA+AGG | - | chr5.2:45085467-45085486 | MS.gene042700:intron | 35.0% |
| !! | AAAGTGTTGTTGTGGGAAAA+TGG | - | chr5.2:45085796-45085815 | MS.gene042700:intron | 35.0% |
| !! | ATGTTCAGAAAGTGTTGTTG+TGG | - | chr5.2:45085788-45085807 | MS.gene042700:intron | 35.0% |
| !! | CTTGAGCTGTTTTATAGATC+AGG | - | chr5.2:45084669-45084688 | MS.gene042700:CDS | 35.0% |
| !! | GAAATTGAATTCTGGTTTCC+CGG | + | chr5.2:45085754-45085773 | None:intergenic | 35.0% |
| !! | GCTTCAGTGACTTTGATTTT+CGG | + | chr5.2:45085009-45085028 | None:intergenic | 35.0% |
| !! | TAGTATTGATTGGAGGACAA+TGG | + | chr5.2:45084756-45084775 | None:intergenic | 35.0% |
| !! | TGTTCAGAAAGTGTTGTTGT+GGG | - | chr5.2:45085789-45085808 | MS.gene042700:intron | 35.0% |
| !!! | CAAGGTTTTTAAGTAGAAGG+TGG | - | chr5.2:45085658-45085677 | MS.gene042700:intron | 35.0% |
| !!! | CTCCAAGGTTTTTAAGTAGA+AGG | - | chr5.2:45085655-45085674 | MS.gene042700:intron | 35.0% |
| AACTCATGCACATGTACTCA+CGG | + | chr5.2:45085222-45085241 | None:intergenic | 40.0% | |
| AAGCGGAATCCAAATAACAG+AGG | - | chr5.2:45085025-45085044 | MS.gene042700:CDS | 40.0% | |
| AAGGCAAACCCTTAACTTCA+TGG | + | chr5.2:45084632-45084651 | None:intergenic | 40.0% | |
| CATCTTCATGGCAAGAAAAG+AGG | - | chr5.2:45084783-45084802 | MS.gene042700:CDS | 40.0% | |
| CGCTGTTGTTCAAAAAGAAG+TGG | - | chr5.2:45085977-45085996 | MS.gene042700:intron | 40.0% | |
| CTTAAGGGCGGAATTAAAGA+TGG | - | chr5.2:45085082-45085101 | MS.gene042700:CDS | 40.0% | |
| GAACAATGTGGGTTTGAGTA+TGG | - | chr5.2:45086094-45086113 | MS.gene042700:CDS | 40.0% | |
| GACAATGGCTGATTAAGAAC+TGG | + | chr5.2:45084741-45084760 | None:intergenic | 40.0% | |
| GCTAAATCTGTTGCTGAAGA+TGG | - | chr5.2:45085627-45085646 | MS.gene042700:intron | 40.0% | |
| TATCTCTATTACCCTGAACG+TGG | + | chr5.2:45085346-45085365 | None:intergenic | 40.0% | |
| TTGAAGGGACTAATAAGGGA+TGG | - | chr5.2:45086207-45086226 | MS.gene042700:CDS | 40.0% | |
| ! | AGCTCAAGGTTCATGTTTTG+AGG | + | chr5.2:45084657-45084676 | None:intergenic | 40.0% |
| !! | GCTCAAGGTTCATGTTTTGA+GGG | + | chr5.2:45084656-45084675 | None:intergenic | 40.0% |
| !! | GGAGAGTACCATGAAGTTAA+GGG | - | chr5.2:45084621-45084640 | MS.gene042700:CDS | 40.0% |
| !!! | ACCAACATCTTGTTTTGGGT+TGG | - | chr5.2:45084599-45084618 | MS.gene042700:CDS | 40.0% |
| !!! | AGGTTCATGTTTTGAGGGAA+AGG | + | chr5.2:45084651-45084670 | None:intergenic | 40.0% |
| !!! | CCAACATCTTGTTTTGGGTT+GGG | - | chr5.2:45084600-45084619 | MS.gene042700:CDS | 40.0% |
| AAGTGGTTGTAATTGCTGGG+TGG | - | chr5.2:45085994-45086013 | MS.gene042700:intron | 45.0% | |
| AGTGGTTGTAATTGCTGGGT+GGG | - | chr5.2:45085995-45086014 | MS.gene042700:intron | 45.0% | |
| ATCAAAGCAGGCGTCACTTA+AGG | - | chr5.2:45085066-45085085 | MS.gene042700:CDS | 45.0% | |
| CCCAACCCAAAACAAGATGT+TGG | + | chr5.2:45084603-45084622 | None:intergenic | 45.0% | |
| TCAAAGCAGGCGTCACTTAA+GGG | - | chr5.2:45085067-45085086 | MS.gene042700:CDS | 45.0% | |
| ! | AGGCCCTAATTCTGGTGTTT+TGG | - | chr5.2:45084554-45084573 | MS.gene042700:CDS | 45.0% |
| !! | ATGGCTTGGTGGGAAAGAAA+AGG | - | chr5.2:45086157-45086176 | MS.gene042700:CDS | 45.0% |
| !! | GGGAGAGTACCATGAAGTTA+AGG | - | chr5.2:45084620-45084639 | MS.gene042700:CDS | 45.0% |
| !! | TCAAGTCTTGGAGAAGCATC+AGG | - | chr5.2:45085708-45085727 | MS.gene042700:intron | 45.0% |
| AACTCTGTTGCACGATGCAG+CGG | - | chr5.2:45085252-45085271 | MS.gene042700:CDS | 50.0% | |
| AATGAAGTGGGAGCAGGAGA+GGG | - | chr5.2:45086130-45086149 | MS.gene042700:CDS | 50.0% | |
| ACACCAGAATTAGGGCCTTC+TGG | + | chr5.2:45084552-45084571 | None:intergenic | 50.0% | |
| CTCTCATTACCTCCACCAGA+AGG | - | chr5.2:45084534-45084553 | MS.gene042700:CDS | 50.0% | |
| CTGAAGATGGATACCCTCCA+AGG | - | chr5.2:45085640-45085659 | MS.gene042700:intron | 50.0% | |
| GCATCGTGCAACAGAGTTAG+AGG | + | chr5.2:45085250-45085269 | None:intergenic | 50.0% | |
| TGAGAGAATGAAGTGGGAGC+AGG | - | chr5.2:45086124-45086143 | MS.gene042700:CDS | 50.0% | |
| !! | TCTTGGAGAAGCATCAGGTG+TGG | - | chr5.2:45085713-45085732 | MS.gene042700:intron | 50.0% |
| !! | TGAATTCTGGTTTCCCGGCA+CGG | + | chr5.2:45085749-45085768 | None:intergenic | 50.0% |
| AAGCAGGCGTCACTTAAGGG+CGG | - | chr5.2:45085070-45085089 | MS.gene042700:CDS | 55.0% | |
| CCACCAGAAGGCCCTAATTC+TGG | - | chr5.2:45084546-45084565 | MS.gene042700:CDS | 55.0% | |
| CCAGAATTAGGGCCTTCTGG+TGG | + | chr5.2:45084549-45084568 | None:intergenic | 55.0% | |
| GAATGAAGTGGGAGCAGGAG+AGG | - | chr5.2:45086129-45086148 | MS.gene042700:CDS | 55.0% | |
| GAATTAGGGCCTTCTGGTGG+AGG | + | chr5.2:45084546-45084565 | None:intergenic | 55.0% | |
| GCAGCGACTGCTAGAACTGT+TGG | + | chr5.2:45085324-45085343 | None:intergenic | 55.0% | |
| TGCTGGGTGGGAAGCTATGA+TGG | - | chr5.2:45086007-45086026 | MS.gene042700:intron | 55.0% | |
| !! | AGAGGGTTGGATGGCTTGGT+GGG | - | chr5.2:45086147-45086166 | MS.gene042700:CDS | 55.0% |
| AAGTGGGAGCAGGAGAGGGT+TGG | - | chr5.2:45086134-45086153 | MS.gene042700:CDS | 60.0% | |
| AGCAGTCGCTGCCACGTTCA+GGG | - | chr5.2:45085332-45085351 | MS.gene042700:CDS | 60.0% | |
| CAGGAGAGGGTTGGATGGCT+TGG | - | chr5.2:45086143-45086162 | MS.gene042700:CDS | 60.0% | |
| GTGGATGATTCCCTCCGTGC+CGG | - | chr5.2:45085732-45085751 | MS.gene042700:intron | 60.0% | |
| TAGCAGTCGCTGCCACGTTC+AGG | - | chr5.2:45085331-45085350 | MS.gene042700:CDS | 60.0% | |
| TGGATGATTCCCTCCGTGCC+GGG | - | chr5.2:45085733-45085752 | MS.gene042700:intron | 60.0% | |
| ! | GAGAGGGTTGGATGGCTTGG+TGG | - | chr5.2:45086146-45086165 | MS.gene042700:CDS | 60.0% |
| !! | ATTCTGGTTTCCCGGCACGG+AGG | + | chr5.2:45085746-45085765 | None:intergenic | 60.0% |
| !! | TTCTGGTTTCCCGGCACGGA+GGG | + | chr5.2:45085745-45085764 | None:intergenic | 60.0% |
| GGGAGCAGGAGAGGGTTGGA+TGG | - | chr5.2:45086138-45086157 | MS.gene042700:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 45084486 | 45086346 | 45084486 | ID=MS.gene042700 |
| chr5.2 | mRNA | 45084486 | 45086346 | 45084486 | ID=MS.gene042700.t1;Parent=MS.gene042700 |
| chr5.2 | exon | 45086027 | 45086346 | 45086027 | ID=MS.gene042700.t1.exon1;Parent=MS.gene042700.t1 |
| chr5.2 | CDS | 45086027 | 45086346 | 45086027 | ID=cds.MS.gene042700.t1;Parent=MS.gene042700.t1 |
| chr5.2 | exon | 45084486 | 45085365 | 45084486 | ID=MS.gene042700.t1.exon2;Parent=MS.gene042700.t1 |
| chr5.2 | CDS | 45084486 | 45085365 | 45084486 | ID=cds.MS.gene042700.t1;Parent=MS.gene042700.t1 |
| Gene Sequence |
| Protein sequence |
