Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68297.t1 | RHN55134.1 | 94.6 | 388 | 19 | 1 | 1 | 388 | 31 | 416 | 7.80E-215 | 756.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68297.t1 | G7K475 | 94.6 | 388 | 19 | 1 | 1 | 388 | 1 | 386 | 5.6e-215 | 756.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052053 | MS.gene68297 | 0.80773 | 4.38E-50 | -1.69E-46 |
| MS.gene058628 | MS.gene68297 | 0.826757 | 2.28E-54 | -1.69E-46 |
| MS.gene058629 | MS.gene68297 | 0.815795 | 7.70E-52 | -1.69E-46 |
| MS.gene058630 | MS.gene68297 | 0.815183 | 1.05E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68297 | MS.gene45118 | PPI |
| MS.gene68297 | MS.gene027540 | PPI |
| MS.gene68297 | MS.gene027534 | PPI |
| MS.gene68297 | MS.gene042700 | PPI |
| MS.gene68297 | MS.gene45114 | PPI |
| MS.gene68297 | MS.gene027535 | PPI |
| MS.gene68297 | MS.gene45117 | PPI |
| MS.gene68297 | MS.gene027539 | PPI |
| MS.gene68297 | MS.gene45116 | PPI |
| MS.gene027544 | MS.gene68297 | PPI |
| MS.gene68297 | MS.gene027537 | PPI |
| MS.gene68297 | MS.gene68292 | PPI |
| MS.gene68297 | MS.gene027544 | PPI |
| MS.gene68293 | MS.gene68297 | PPI |
| MS.gene68297 | MS.gene68298 | PPI |
| MS.gene68297 | MS.gene027543 | PPI |
| MS.gene68297 | MS.gene053932 | PPI |
| MS.gene68297 | MS.gene045965 | PPI |
| MS.gene68297 | MS.gene43936 | PPI |
| MS.gene68297 | MS.gene45119 | PPI |
| MS.gene68296 | MS.gene68297 | PPI |
| MS.gene68297 | MS.gene68296 | PPI |
| MS.gene68297 | MS.gene43935 | PPI |
| MS.gene68297 | MS.gene45115 | PPI |
| MS.gene68297 | MS.gene68293 | PPI |
| MS.gene68297 | MS.gene68295 | PPI |
| MS.gene68297 | MS.gene78745 | PPI |
| MS.gene68297 | MS.gene027538 | PPI |
| MS.gene68297 | MS.gene027536 | PPI |
| MS.gene68297 | MS.gene45120 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68297.t1 | MTR_5g035690 | 94.588 | 388 | 19 | 1 | 1 | 388 | 1 | 386 | 0.0 | 763 |
| MS.gene68297.t1 | MTR_5g035665 | 87.629 | 388 | 39 | 2 | 1 | 388 | 1 | 379 | 0.0 | 698 |
| MS.gene68297.t1 | MTR_5g035750 | 86.375 | 389 | 50 | 2 | 1 | 388 | 1 | 387 | 0.0 | 693 |
| MS.gene68297.t1 | MTR_5g035670 | 83.763 | 388 | 56 | 1 | 1 | 388 | 1 | 381 | 0.0 | 666 |
| MS.gene68297.t1 | MTR_5g035760 | 78.351 | 388 | 76 | 1 | 1 | 388 | 1 | 380 | 0.0 | 619 |
| MS.gene68297.t1 | MTR_6g472110 | 51.232 | 406 | 173 | 11 | 1 | 388 | 1 | 399 | 2.66e-131 | 382 |
| MS.gene68297.t1 | MTR_6g016660 | 42.998 | 407 | 204 | 10 | 1 | 388 | 1 | 398 | 7.49e-100 | 302 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68297.t1 | AT1G13480 | 44.221 | 398 | 201 | 9 | 1 | 388 | 1 | 387 | 3.13e-106 | 318 |
| MS.gene68297.t1 | AT1G13510 | 44.862 | 399 | 190 | 12 | 1 | 388 | 1 | 380 | 9.91e-105 | 314 |
| MS.gene68297.t1 | AT1G13530 | 46.766 | 402 | 183 | 13 | 1 | 388 | 1 | 385 | 3.75e-104 | 313 |
| MS.gene68297.t1 | AT1G13520 | 45.137 | 401 | 193 | 12 | 1 | 388 | 1 | 387 | 1.85e-103 | 311 |
| MS.gene68297.t1 | AT1G13540 | 45.250 | 400 | 188 | 12 | 1 | 388 | 1 | 381 | 8.17e-102 | 306 |
| MS.gene68297.t1 | AT1G13490 | 45.226 | 398 | 192 | 10 | 1 | 388 | 1 | 382 | 1.54e-99 | 301 |
| MS.gene68297.t1 | AT1G13470 | 46.212 | 396 | 187 | 12 | 1 | 388 | 1 | 378 | 3.26e-97 | 295 |
| MS.gene68297.t1 | AT1G13550 | 43.641 | 401 | 194 | 14 | 1 | 385 | 1 | 385 | 1.87e-94 | 288 |
| MS.gene68297.t1 | AT1G13500 | 45.409 | 403 | 188 | 15 | 1 | 388 | 1 | 386 | 1.21e-90 | 278 |
| MS.gene68297.t1 | AT1G13490 | 43.325 | 397 | 182 | 10 | 1 | 388 | 1 | 363 | 1.26e-90 | 277 |
| MS.gene68297.t1 | AT1G61600 | 38.642 | 427 | 217 | 9 | 1 | 388 | 1 | 421 | 1.23e-88 | 274 |
Find 92 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTAATGCTTGGCTTAAA+TGG | 0.196314 | 5.2:-26213158 | None:intergenic |
| CCTGGCTTATTAAGGGAAAA+AGG | 0.208156 | 5.2:+26213102 | MS.gene68297:CDS |
| GAATTCCTCCTGGCTTATTA+AGG | 0.210362 | 5.2:+26213094 | MS.gene68297:CDS |
| TTGAAGGAAAGGACGCTATT+TGG | 0.216758 | 5.2:+26213445 | MS.gene68297:CDS |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5.2:-26213273 | None:intergenic |
| AAGATTGAAAAGTTGAAATT+TGG | 0.220039 | 5.2:-26213207 | None:intergenic |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5.2:+26213287 | MS.gene68297:CDS |
| TCAGACACTCACATCAAATT+AGG | 0.281648 | 5.2:+26213730 | MS.gene68297:CDS |
| GAGGAGAATGGATACAAAAT+TGG | 0.283501 | 5.2:+26213692 | MS.gene68297:CDS |
| ATCACAAGATAACCTGAATT+TGG | 0.289417 | 5.2:-26212472 | None:intergenic |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5.2:+26213518 | MS.gene68297:CDS |
| GCTCAAACTTACTCTTGTTT+TGG | 0.301630 | 5.2:+26212508 | MS.gene68297:CDS |
| CCACCATCAGGGCCAAATTC+AGG | 0.344257 | 5.2:+26212460 | MS.gene68297:CDS |
| TTAGCAACTTCTGTTTGAAT+AGG | 0.344922 | 5.2:-26213420 | None:intergenic |
| CACATCAAATTAGGAGCAAA+TGG | 0.354134 | 5.2:+26213739 | MS.gene68297:CDS |
| TGAAGGAAAGGACGCTATTT+GGG | 0.357935 | 5.2:+26213446 | MS.gene68297:CDS |
| TTGAAGGGCTCCAAAGCTAT+TGG | 0.369259 | 5.2:-26213003 | None:intergenic |
| AAAGTTGAAATTTGGTAGCT+TGG | 0.373273 | 5.2:-26213199 | None:intergenic |
| ATTCTTGATTCTATTGTCCT+TGG | 0.390390 | 5.2:-26212536 | None:intergenic |
| ACAAAAGTTGAAGAGTTTGA+TGG | 0.392275 | 5.2:+26213615 | MS.gene68297:CDS |
| TTGGCTTAAATGGTAGTTGC+GGG | 0.394226 | 5.2:-26213148 | None:intergenic |
| CCTTTGAACTTGTATTAGCT+TGG | 0.394949 | 5.2:-26212930 | None:intergenic |
| AATTCCTCCTGGCTTATTAA+GGG | 0.397833 | 5.2:+26213095 | MS.gene68297:CDS |
| GACAATGGTTGATTCAATAC+TGG | 0.398389 | 5.2:-26212661 | None:intergenic |
| TGATGTTAAACCAATAGCTT+TGG | 0.399590 | 5.2:+26212993 | MS.gene68297:CDS |
| TCAAAGGAAAATGAAAATAG+TGG | 0.401929 | 5.2:+26213372 | MS.gene68297:CDS |
| AAGTTATTCTTTGAGGAGAA+TGG | 0.403630 | 5.2:+26213680 | MS.gene68297:CDS |
| GCCTCTGATGGAATTCCTCC+TGG | 0.425563 | 5.2:+26213084 | MS.gene68297:CDS |
| CTTTCCAACAACCACTGATT+CGG | 0.426945 | 5.2:-26213241 | None:intergenic |
| GAAAGGTTTGGATGGAATGC+TGG | 0.429285 | 5.2:+26213570 | MS.gene68297:CDS |
| TACCATTTAAGCCAAGCATT+AGG | 0.431877 | 5.2:+26213156 | MS.gene68297:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5.2:+26213337 | MS.gene68297:CDS |
| GTTTCAGACCCACCACCATC+AGG | 0.436579 | 5.2:+26212448 | MS.gene68297:CDS |
| AAATGGGAACAAGAAAGGTT+TGG | 0.437035 | 5.2:+26213558 | MS.gene68297:CDS |
| TATTTGGGATGAAAATAGAT+TGG | 0.437437 | 5.2:+26213461 | MS.gene68297:CDS |
| TGGTTGAAAGTTATTCTTTG+AGG | 0.448102 | 5.2:+26213673 | MS.gene68297:CDS |
| GCCCTTCAATGATTATCAAC+AGG | 0.448229 | 5.2:+26213017 | MS.gene68297:CDS |
| ACAGAAGTTGCTAAGGTTGA+AGG | 0.453239 | 5.2:+26213429 | MS.gene68297:CDS |
| TCAGGTGTAAATAGTCAAAC+AGG | 0.457058 | 5.2:+26212601 | MS.gene68297:CDS |
| GGCTTCTTTCCATGTACAAA+AGG | 0.457238 | 5.2:+26212413 | MS.gene68297:CDS |
| GCAAAATCCGTTGCCTCTGA+TGG | 0.460171 | 5.2:+26213072 | MS.gene68297:CDS |
| AGAAGGAAGGGGAAATTTCA+AGG | 0.460902 | 5.2:+26212706 | MS.gene68297:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5.2:+26213468 | MS.gene68297:CDS |
| TACCTGTTGATAATCATTGA+AGG | 0.466990 | 5.2:-26213019 | None:intergenic |
| GAATTTGGCCCTGATGGTGG+TGG | 0.471784 | 5.2:-26212457 | None:intergenic |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5.2:+26213507 | MS.gene68297:CDS |
| GTTTGGATGGAATGCTGGGA+AGG | 0.480324 | 5.2:+26213575 | MS.gene68297:CDS |
| ATAACCATCAGTTATTCATC+AGG | 0.482475 | 5.2:+26212583 | MS.gene68297:CDS |
| AATCATTTGAACCTAATGCT+TGG | 0.490134 | 5.2:-26213167 | None:intergenic |
| GAAATTTAGTTGTTATGTGC+TGG | 0.495601 | 5.2:+26213653 | MS.gene68297:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.2:+26213273 | MS.gene68297:CDS |
| ATCGCTATTATGTTATAAGA+AGG | 0.507064 | 5.2:+26212689 | MS.gene68297:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.507438 | 5.2:+26213576 | MS.gene68297:CDS |
| GAAAATGAAAATAGTGGAGA+AGG | 0.517844 | 5.2:+26213378 | MS.gene68297:CDS |
| GGGAACAAGAAAGGTTTGGA+TGG | 0.524181 | 5.2:+26213562 | MS.gene68297:CDS |
| TAATACAAGTTCAAAGGAAG+AGG | 0.529363 | 5.2:+26212936 | MS.gene68297:CDS |
| GAATGAAATGGGAACAAGAA+AGG | 0.531154 | 5.2:+26213553 | MS.gene68297:CDS |
| TATTCAAACAGAAGTTGCTA+AGG | 0.531497 | 5.2:+26213422 | MS.gene68297:CDS |
| ATTTGGTAGCTTGGAACGCA+AGG | 0.531864 | 5.2:-26213190 | None:intergenic |
| AGTTTGATGGAACAAACAAA+TGG | 0.536388 | 5.2:+26213628 | MS.gene68297:CDS |
| ACATCAAATTAGGAGCAAAT+GGG | 0.536534 | 5.2:+26213740 | MS.gene68297:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.541325 | 5.2:-26212456 | None:intergenic |
| ACCTGTTGATAATCATTGAA+GGG | 0.546054 | 5.2:-26213018 | None:intergenic |
| AGTTGTTGAGGGAATGAAAT+GGG | 0.546947 | 5.2:+26213542 | MS.gene68297:CDS |
| CCAAGCTAATACAAGTTCAA+AGG | 0.554728 | 5.2:+26212930 | MS.gene68297:CDS |
| CTATTATGTTATAAGAAGGA+AGG | 0.557905 | 5.2:+26212693 | MS.gene68297:CDS |
| CTTGGCTTAAATGGTAGTTG+CGG | 0.559548 | 5.2:-26213149 | None:intergenic |
| TTGAGTTTGGAAGTTGTTGA+GGG | 0.559577 | 5.2:+26213531 | MS.gene68297:CDS |
| AAAGGTTTGGATGGAATGCT+GGG | 0.561735 | 5.2:+26213571 | MS.gene68297:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.563048 | 5.2:+26213244 | MS.gene68297:CDS |
| TAACCTGAATTTGGCCCTGA+TGG | 0.566146 | 5.2:-26212463 | None:intergenic |
| TATTATGTTATAAGAAGGAA+GGG | 0.576465 | 5.2:+26212694 | MS.gene68297:CDS |
| TAATGATTGTTCCGAATCAG+TGG | 0.577534 | 5.2:+26213230 | MS.gene68297:CDS |
| TGTTCCGAATCAGTGGTTGT+TGG | 0.577833 | 5.2:+26213237 | MS.gene68297:CDS |
| TACACCTGATGAATAACTGA+TGG | 0.584467 | 5.2:-26212587 | None:intergenic |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.2:+26213269 | MS.gene68297:CDS |
| AGGAATTCCATCAGAGGCAA+CGG | 0.588713 | 5.2:-26213079 | None:intergenic |
| GAACATAGCTTCTTCACTGT+GGG | 0.591417 | 5.2:-26212635 | None:intergenic |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.595211 | 5.2:+26213530 | MS.gene68297:CDS |
| GAAGGAAGGGGAAATTTCAA+GGG | 0.598720 | 5.2:+26212707 | MS.gene68297:CDS |
| AGTTGCTAAGGTTGAAGGAA+AGG | 0.599670 | 5.2:+26213434 | MS.gene68297:CDS |
| AAGTTGTTGAGGGAATGAAA+TGG | 0.611433 | 5.2:+26213541 | MS.gene68297:CDS |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5.2:+26213338 | MS.gene68297:CDS |
| CCTGAATTTGGCCCTGATGG+TGG | 0.613907 | 5.2:-26212460 | None:intergenic |
| TTTCAGACCCACCACCATCA+GGG | 0.620015 | 5.2:+26212449 | MS.gene68297:CDS |
| TGGCTTAAATGGTAGTTGCG+GGG | 0.627549 | 5.2:-26213147 | None:intergenic |
| GCCAGGAGGAATTCCATCAG+AGG | 0.628216 | 5.2:-26213085 | None:intergenic |
| GGTGGGTCTGAAACAGCACT+AGG | 0.661399 | 5.2:-26212439 | None:intergenic |
| AAAACTACAACAAAAGCATG+TGG | 0.665724 | 5.2:-26212965 | None:intergenic |
| TGAACATAGCTTCTTCACTG+TGG | 0.668145 | 5.2:-26212636 | None:intergenic |
| ATTATGTTATAAGAAGGAAG+GGG | 0.668280 | 5.2:+26212695 | MS.gene68297:CDS |
| TAATAGCGATTAGAAGACAA+TGG | 0.675741 | 5.2:-26212676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGACATAATTATATTTTTGT+TGG | + | chr5.2:26212808-26212827 | MS.gene68297:intron | 15.0% |
| !! | AAGATTGAAAAGTTGAAATT+TGG | - | chr5.2:26213210-26213229 | None:intergenic | 20.0% |
| !! | GAAATAATCAAAAAAGGTTA+TGG | + | chr5.2:26213042-26213061 | MS.gene68297:CDS | 20.0% |
| !! | TATTATGTTATAAGAAGGAA+GGG | + | chr5.2:26212694-26212713 | MS.gene68297:CDS | 20.0% |
| !!! | GTTGATTTATAAAGTAATAG+AGG | + | chr5.2:26212868-26212887 | MS.gene68297:intron | 20.0% |
| ! | ATCGCTATTATGTTATAAGA+AGG | + | chr5.2:26212689-26212708 | MS.gene68297:CDS | 25.0% |
| ! | ATTATGTTATAAGAAGGAAG+GGG | + | chr5.2:26212695-26212714 | MS.gene68297:CDS | 25.0% |
| ! | CAGGTAGAAATAATCAAAAA+AGG | + | chr5.2:26213036-26213055 | MS.gene68297:CDS | 25.0% |
| ! | CATGGTTAAAGAAAAAGAAA+TGG | + | chr5.2:26212846-26212865 | MS.gene68297:intron | 25.0% |
| ! | CTATTATGTTATAAGAAGGA+AGG | + | chr5.2:26212693-26212712 | MS.gene68297:CDS | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5.2:26213287-26213306 | MS.gene68297:CDS | 25.0% |
| ! | TCAAAGGAAAATGAAAATAG+TGG | + | chr5.2:26213372-26213391 | MS.gene68297:CDS | 25.0% |
| ! | TCATATTACAATTCTCTGTT+GGG | - | chr5.2:26212789-26212808 | None:intergenic | 25.0% |
| ! | TGGTAATTAGTTAACTTTCA+TGG | + | chr5.2:26212828-26212847 | MS.gene68297:intron | 25.0% |
| !! | TATTTGGGATGAAAATAGAT+TGG | + | chr5.2:26213461-26213480 | MS.gene68297:CDS | 25.0% |
| !!! | ATGGTTATATTTTTGTTCTG+AGG | - | chr5.2:26212571-26212590 | None:intergenic | 25.0% |
| AATCATTTGAACCTAATGCT+TGG | - | chr5.2:26213170-26213189 | None:intergenic | 30.0% | |
| ACAAAAGTTGAAGAGTTTGA+TGG | + | chr5.2:26213615-26213634 | MS.gene68297:CDS | 30.0% | |
| ACATCAAATTAGGAGCAAAT+GGG | + | chr5.2:26213740-26213759 | MS.gene68297:CDS | 30.0% | |
| AGTTTGATGGAACAAACAAA+TGG | + | chr5.2:26213628-26213647 | MS.gene68297:CDS | 30.0% | |
| ATAACCATCAGTTATTCATC+AGG | + | chr5.2:26212583-26212602 | MS.gene68297:CDS | 30.0% | |
| ATCACAAGATAACCTGAATT+TGG | - | chr5.2:26212475-26212494 | None:intergenic | 30.0% | |
| ATTCTTGATTCTATTGTCCT+TGG | - | chr5.2:26212539-26212558 | None:intergenic | 30.0% | |
| CTCATATTACAATTCTCTGT+TGG | - | chr5.2:26212790-26212809 | None:intergenic | 30.0% | |
| GAAATTTAGTTGTTATGTGC+TGG | + | chr5.2:26213653-26213672 | MS.gene68297:CDS | 30.0% | |
| TAATACAAGTTCAAAGGAAG+AGG | + | chr5.2:26212936-26212955 | MS.gene68297:CDS | 30.0% | |
| TAATAGCGATTAGAAGACAA+TGG | - | chr5.2:26212679-26212698 | None:intergenic | 30.0% | |
| TATTCAAACAGAAGTTGCTA+AGG | + | chr5.2:26213422-26213441 | MS.gene68297:CDS | 30.0% | |
| TGATGTTAAACCAATAGCTT+TGG | + | chr5.2:26212993-26213012 | MS.gene68297:CDS | 30.0% | |
| TGGTTGAAAGTTATTCTTTG+AGG | + | chr5.2:26213673-26213692 | MS.gene68297:CDS | 30.0% | |
| TTAGCAACTTCTGTTTGAAT+AGG | - | chr5.2:26213423-26213442 | None:intergenic | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.2:26213269-26213288 | MS.gene68297:CDS | 30.0% | |
| ! | AAAACTACAACAAAAGCATG+TGG | - | chr5.2:26212968-26212987 | None:intergenic | 30.0% |
| ! | AAAGTTGAAATTTGGTAGCT+TGG | - | chr5.2:26213202-26213221 | None:intergenic | 30.0% |
| ! | AAGTTATTCTTTGAGGAGAA+TGG | + | chr5.2:26213680-26213699 | MS.gene68297:CDS | 30.0% |
| ! | ATGGGAGAAGATATTTTCAA+AGG | + | chr5.2:26213356-26213375 | MS.gene68297:CDS | 30.0% |
| ! | GAAAATGAAAATAGTGGAGA+AGG | + | chr5.2:26213378-26213397 | MS.gene68297:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.2:26213468-26213487 | MS.gene68297:CDS | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5.2:26213021-26213040 | None:intergenic | 30.0% |
| !! | TACCTGTTGATAATCATTGA+AGG | - | chr5.2:26213022-26213041 | None:intergenic | 30.0% |
| !!! | ATATTTTTGTTCTGAGGTAG+AGG | - | chr5.2:26212565-26212584 | None:intergenic | 30.0% |
| AAATGGGAACAAGAAAGGTT+TGG | + | chr5.2:26213558-26213577 | MS.gene68297:CDS | 35.0% | |
| AACCTAATGCTTGGCTTAAA+TGG | - | chr5.2:26213161-26213180 | None:intergenic | 35.0% | |
| AAGTTGTTGAGGGAATGAAA+TGG | + | chr5.2:26213541-26213560 | MS.gene68297:CDS | 35.0% | |
| AATTCCTCCTGGCTTATTAA+GGG | + | chr5.2:26213095-26213114 | MS.gene68297:CDS | 35.0% | |
| AGTTGTTGAGGGAATGAAAT+GGG | + | chr5.2:26213542-26213561 | MS.gene68297:CDS | 35.0% | |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5.2:26213530-26213549 | MS.gene68297:CDS | 35.0% | |
| CACATCAAATTAGGAGCAAA+TGG | + | chr5.2:26213739-26213758 | MS.gene68297:CDS | 35.0% | |
| CCAAGCTAATACAAGTTCAA+AGG | + | chr5.2:26212930-26212949 | MS.gene68297:CDS | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.2:26213273-26213292 | MS.gene68297:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.2:26213276-26213295 | None:intergenic | 35.0% | |
| CCTTTGAACTTGTATTAGCT+TGG | - | chr5.2:26212933-26212952 | None:intergenic | 35.0% | |
| CTGGCTTATTAAGGGAAAAA+GGG | + | chr5.2:26213103-26213122 | MS.gene68297:CDS | 35.0% | |
| GAATGAAATGGGAACAAGAA+AGG | + | chr5.2:26213553-26213572 | MS.gene68297:CDS | 35.0% | |
| GAGGAGAATGGATACAAAAT+TGG | + | chr5.2:26213692-26213711 | MS.gene68297:CDS | 35.0% | |
| TAATGATTGTTCCGAATCAG+TGG | + | chr5.2:26213230-26213249 | MS.gene68297:CDS | 35.0% | |
| TACACCTGATGAATAACTGA+TGG | - | chr5.2:26212590-26212609 | None:intergenic | 35.0% | |
| TACCATTTAAGCCAAGCATT+AGG | + | chr5.2:26213156-26213175 | MS.gene68297:CDS | 35.0% | |
| TCAGACACTCACATCAAATT+AGG | + | chr5.2:26213730-26213749 | MS.gene68297:CDS | 35.0% | |
| TCAGGTGTAAATAGTCAAAC+AGG | + | chr5.2:26212601-26212620 | MS.gene68297:CDS | 35.0% | |
| TTGAGTTTGGAAGTTGTTGA+GGG | + | chr5.2:26213531-26213550 | MS.gene68297:CDS | 35.0% | |
| ! | ACTAGGATTCCTTTTGTACA+TGG | - | chr5.2:26212425-26212444 | None:intergenic | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5.2:26213507-26213526 | MS.gene68297:CDS | 35.0% |
| ! | GACAATGGTTGATTCAATAC+TGG | - | chr5.2:26212664-26212683 | None:intergenic | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.2:26213518-26213537 | MS.gene68297:CDS | 35.0% |
| !! | GCTCAAACTTACTCTTGTTT+TGG | + | chr5.2:26212508-26212527 | MS.gene68297:CDS | 35.0% |
| AAAGGTTTGGATGGAATGCT+GGG | + | chr5.2:26213571-26213590 | MS.gene68297:CDS | 40.0% | |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.2:26213244-26213263 | MS.gene68297:CDS | 40.0% | |
| AATTCTCTGTTGGGATAGCA+GGG | - | chr5.2:26212780-26212799 | None:intergenic | 40.0% | |
| ACAGAAGTTGCTAAGGTTGA+AGG | + | chr5.2:26213429-26213448 | MS.gene68297:CDS | 40.0% | |
| AGAAGGAAGGGGAAATTTCA+AGG | + | chr5.2:26212706-26212725 | MS.gene68297:CDS | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5.2:26213337-26213356 | MS.gene68297:CDS | 40.0% | |
| AGTTGCTAAGGTTGAAGGAA+AGG | + | chr5.2:26213434-26213453 | MS.gene68297:CDS | 40.0% | |
| CCTGGCTTATTAAGGGAAAA+AGG | + | chr5.2:26213102-26213121 | MS.gene68297:CDS | 40.0% | |
| CTTGGCTTAAATGGTAGTTG+CGG | - | chr5.2:26213152-26213171 | None:intergenic | 40.0% | |
| GAACATAGCTTCTTCACTGT+GGG | - | chr5.2:26212638-26212657 | None:intergenic | 40.0% | |
| GAAGGAAGGGGAAATTTCAA+GGG | + | chr5.2:26212707-26212726 | MS.gene68297:CDS | 40.0% | |
| GAATTCCTCCTGGCTTATTA+AGG | + | chr5.2:26213094-26213113 | MS.gene68297:CDS | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5.2:26213017-26213036 | MS.gene68297:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5.2:26213338-26213357 | MS.gene68297:CDS | 40.0% | |
| GCTTATTAAGGGAAAAAGGG+TGG | + | chr5.2:26213106-26213125 | MS.gene68297:CDS | 40.0% | |
| GGCTTCTTTCCATGTACAAA+AGG | + | chr5.2:26212413-26212432 | MS.gene68297:CDS | 40.0% | |
| TGAACATAGCTTCTTCACTG+TGG | - | chr5.2:26212639-26212658 | None:intergenic | 40.0% | |
| TGAAGGAAAGGACGCTATTT+GGG | + | chr5.2:26213446-26213465 | MS.gene68297:CDS | 40.0% | |
| TTGAAGGAAAGGACGCTATT+TGG | + | chr5.2:26213445-26213464 | MS.gene68297:CDS | 40.0% | |
| TTGGCTTAAATGGTAGTTGC+GGG | - | chr5.2:26213151-26213170 | None:intergenic | 40.0% | |
| ! | CCTTTTTCCCTTAATAAGCC+AGG | - | chr5.2:26213105-26213124 | None:intergenic | 40.0% |
| ! | CTTTCCAACAACCACTGATT+CGG | - | chr5.2:26213244-26213263 | None:intergenic | 40.0% |
| ! | TTTTCCCTTAATAAGCCAGG+AGG | - | chr5.2:26213102-26213121 | None:intergenic | 40.0% |
| !!! | CTCTTGTTTTGGTTTGTCCA+AGG | + | chr5.2:26212519-26212538 | MS.gene68297:CDS | 40.0% |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5.2:26213478-26213497 | MS.gene68297:CDS | 40.0% |
| AGGAATTCCATCAGAGGCAA+CGG | - | chr5.2:26213082-26213101 | None:intergenic | 45.0% | |
| CAATTCTCTGTTGGGATAGC+AGG | - | chr5.2:26212781-26212800 | None:intergenic | 45.0% | |
| GAAAGGTTTGGATGGAATGC+TGG | + | chr5.2:26213570-26213589 | MS.gene68297:CDS | 45.0% | |
| GGGAACAAGAAAGGTTTGGA+TGG | + | chr5.2:26213562-26213581 | MS.gene68297:CDS | 45.0% | |
| TAACCTGAATTTGGCCCTGA+TGG | - | chr5.2:26212466-26212485 | None:intergenic | 45.0% | |
| TGGCTTAAATGGTAGTTGCG+GGG | - | chr5.2:26213150-26213169 | None:intergenic | 45.0% | |
| TGTTCCGAATCAGTGGTTGT+TGG | + | chr5.2:26213237-26213256 | MS.gene68297:CDS | 45.0% | |
| TTGAAGGGCTCCAAAGCTAT+TGG | - | chr5.2:26213006-26213025 | None:intergenic | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5.2:26213576-26213595 | MS.gene68297:CDS | 45.0% | |
| ! | ATTTGGTAGCTTGGAACGCA+AGG | - | chr5.2:26213193-26213212 | None:intergenic | 45.0% |
| GCAAAATCCGTTGCCTCTGA+TGG | + | chr5.2:26213072-26213091 | MS.gene68297:CDS | 50.0% | |
| GTTTGGATGGAATGCTGGGA+AGG | + | chr5.2:26213575-26213594 | MS.gene68297:CDS | 50.0% | |
| TTTCAGACCCACCACCATCA+GGG | + | chr5.2:26212449-26212468 | MS.gene68297:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5.2:26212459-26212478 | None:intergenic | 50.0% |
| CCACCATCAGGGCCAAATTC+AGG | + | chr5.2:26212460-26212479 | MS.gene68297:CDS | 55.0% | |
| CCTGAATTTGGCCCTGATGG+TGG | - | chr5.2:26212463-26212482 | None:intergenic | 55.0% | |
| GCCAGGAGGAATTCCATCAG+AGG | - | chr5.2:26213088-26213107 | None:intergenic | 55.0% | |
| GCCTCTGATGGAATTCCTCC+TGG | + | chr5.2:26213084-26213103 | MS.gene68297:CDS | 55.0% | |
| GTTTCAGACCCACCACCATC+AGG | + | chr5.2:26212448-26212467 | MS.gene68297:CDS | 55.0% | |
| ! | GGTGGGTCTGAAACAGCACT+AGG | - | chr5.2:26212442-26212461 | None:intergenic | 55.0% |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5.2:26212460-26212479 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 26212400 | 26213767 | 26212400 | ID=MS.gene68297 |
| chr5.2 | mRNA | 26212400 | 26213767 | 26212400 | ID=MS.gene68297.t1;Parent=MS.gene68297 |
| chr5.2 | exon | 26212400 | 26212728 | 26212400 | ID=MS.gene68297.t1.exon1;Parent=MS.gene68297.t1 |
| chr5.2 | CDS | 26212400 | 26212728 | 26212400 | ID=cds.MS.gene68297.t1;Parent=MS.gene68297.t1 |
| chr5.2 | exon | 26212930 | 26213767 | 26212930 | ID=MS.gene68297.t1.exon2;Parent=MS.gene68297.t1 |
| chr5.2 | CDS | 26212930 | 26213767 | 26212930 | ID=cds.MS.gene68297.t1;Parent=MS.gene68297.t1 |
| Gene Sequence |
| Protein sequence |
