Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45120.t1 | XP_003613367.1 | 92.1 | 380 | 30 | 0 | 1 | 380 | 1 | 380 | 5.90E-207 | 729.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45120.t1 | G7K480 | 92.1 | 380 | 30 | 0 | 1 | 380 | 1 | 380 | 4.2e-207 | 729.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68295 | MS.gene45120 | PPI |
| MS.gene43935 | MS.gene45120 | PPI |
| MS.gene45117 | MS.gene45120 | PPI |
| MS.gene45114 | MS.gene45120 | PPI |
| MS.gene027544 | MS.gene45120 | PPI |
| MS.gene027534 | MS.gene45120 | PPI |
| MS.gene45119 | MS.gene45120 | PPI |
| MS.gene027537 | MS.gene45120 | PPI |
| MS.gene45116 | MS.gene45120 | PPI |
| MS.gene68298 | MS.gene45120 | PPI |
| MS.gene45120 | MS.gene78745 | PPI |
| MS.gene045965 | MS.gene45120 | PPI |
| MS.gene027539 | MS.gene45120 | PPI |
| MS.gene45120 | MS.gene027536 | PPI |
| MS.gene45120 | MS.gene45118 | PPI |
| MS.gene68293 | MS.gene45120 | PPI |
| MS.gene45120 | MS.gene042700 | PPI |
| MS.gene027535 | MS.gene45120 | PPI |
| MS.gene027538 | MS.gene45120 | PPI |
| MS.gene45115 | MS.gene45120 | PPI |
| MS.gene027540 | MS.gene45120 | PPI |
| MS.gene43936 | MS.gene45120 | PPI |
| MS.gene45118 | MS.gene45120 | PPI |
| MS.gene68296 | MS.gene45120 | PPI |
| MS.gene45120 | MS.gene45119 | PPI |
| MS.gene68292 | MS.gene45120 | PPI |
| MS.gene027543 | MS.gene45120 | PPI |
| MS.gene68297 | MS.gene45120 | PPI |
| MS.gene45120 | MS.gene053932 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45120.t1 | MTR_5g035760 | 92.105 | 380 | 30 | 0 | 1 | 380 | 1 | 380 | 0.0 | 731 |
| MS.gene45120.t1 | MTR_5g035665 | 77.045 | 379 | 84 | 2 | 1 | 378 | 1 | 377 | 0.0 | 596 |
| MS.gene45120.t1 | MTR_5g035690 | 75.000 | 388 | 87 | 2 | 1 | 380 | 1 | 386 | 0.0 | 587 |
| MS.gene45120.t1 | MTR_5g035750 | 74.036 | 389 | 90 | 3 | 1 | 380 | 1 | 387 | 0.0 | 572 |
| MS.gene45120.t1 | MTR_5g035670 | 73.491 | 381 | 100 | 1 | 1 | 380 | 1 | 381 | 0.0 | 564 |
| MS.gene45120.t1 | MTR_6g472110 | 48.750 | 400 | 184 | 8 | 1 | 380 | 1 | 399 | 2.00e-117 | 347 |
| MS.gene45120.t1 | MTR_6g016660 | 40.695 | 403 | 211 | 10 | 1 | 380 | 1 | 398 | 1.68e-87 | 270 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45120.t1 | AT1G13510 | 43.003 | 393 | 198 | 12 | 1 | 380 | 1 | 380 | 1.90e-91 | 280 |
| MS.gene45120.t1 | AT1G13540 | 44.162 | 394 | 193 | 12 | 1 | 380 | 1 | 381 | 1.07e-90 | 278 |
| MS.gene45120.t1 | AT1G13530 | 44.697 | 396 | 192 | 12 | 1 | 380 | 1 | 385 | 5.43e-90 | 276 |
| MS.gene45120.t1 | AT1G13480 | 41.310 | 397 | 206 | 10 | 1 | 380 | 1 | 387 | 9.17e-88 | 270 |
| MS.gene45120.t1 | AT1G13490 | 43.734 | 391 | 200 | 10 | 1 | 380 | 1 | 382 | 1.75e-87 | 270 |
| MS.gene45120.t1 | AT1G13520 | 42.317 | 397 | 202 | 11 | 1 | 380 | 1 | 387 | 3.54e-87 | 269 |
| MS.gene45120.t1 | AT1G13470 | 42.239 | 393 | 199 | 12 | 1 | 380 | 1 | 378 | 1.64e-83 | 259 |
| MS.gene45120.t1 | AT1G13550 | 40.657 | 396 | 205 | 11 | 1 | 377 | 1 | 385 | 6.12e-82 | 256 |
| MS.gene45120.t1 | AT1G13490 | 42.821 | 390 | 186 | 10 | 1 | 380 | 1 | 363 | 1.75e-81 | 253 |
| MS.gene45120.t1 | AT1G13500 | 43.038 | 395 | 201 | 12 | 1 | 380 | 1 | 386 | 1.56e-80 | 252 |
| MS.gene45120.t1 | AT1G61600 | 37.825 | 423 | 218 | 10 | 1 | 380 | 1 | 421 | 1.56e-80 | 253 |
Find 89 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACTCTTTCTTTGGTTTA+TGG | 0.118656 | 5.1:+26348221 | MS.gene45120:CDS |
| CCTTCCTTCACAAACATAAA+AGG | 0.157226 | 5.1:-26349045 | None:intergenic |
| GAACTCCATGTGGTTTATTA+AGG | 0.164024 | 5.1:+26348866 | MS.gene45120:CDS |
| CACATCAAATTAGGAGTAAA+TGG | 0.167671 | 5.1:+26349511 | MS.gene45120:CDS |
| ATTACAAGATAACCGGAATT+TGG | 0.183054 | 5.1:-26348178 | None:intergenic |
| TTCCGGTTATCTTGTAATAT+TGG | 0.219881 | 5.1:+26348183 | MS.gene45120:CDS |
| AACCAGTCGTTGTTGGAAAA+TGG | 0.242561 | 5.1:+26349016 | MS.gene45120:CDS |
| GCTCAAACATACTCTTTCTT+TGG | 0.257991 | 5.1:+26348214 | MS.gene45120:CDS |
| TCAGACACTCACATCAAATT+AGG | 0.282058 | 5.1:+26349502 | MS.gene45120:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5.1:+26349290 | MS.gene45120:CDS |
| GAAATAAGCAAGAAACGTTT+TGG | 0.310305 | 5.1:+26348814 | MS.gene45120:CDS |
| GAAGGAAGGAATGAGCTTAA+AGG | 0.355131 | 5.1:+26349059 | MS.gene45120:CDS |
| AGAAAATGTCATGTTTCTTC+CGG | 0.357237 | 5.1:+26348324 | MS.gene45120:CDS |
| ACAAAAGTTGAAGTGTTTGA+TGG | 0.376114 | 5.1:+26349387 | MS.gene45120:CDS |
| TATGGAAGGACATTGGTATT+GGG | 0.376154 | 5.1:+26348239 | MS.gene45120:CDS |
| TTATGGAAGGACATTGGTAT+TGG | 0.383369 | 5.1:+26348238 | MS.gene45120:CDS |
| ATCCAATATTACAAGATAAC+CGG | 0.385906 | 5.1:-26348185 | None:intergenic |
| TCACTCAAATGGTAATTTGT+AGG | 0.387265 | 5.1:-26348919 | None:intergenic |
| CCTTTGAATTTAAGTTTGCT+TGG | 0.389776 | 5.1:-26348702 | None:intergenic |
| CCACCATCAGGTCCAAATTC+CGG | 0.397966 | 5.1:+26348166 | MS.gene45120:CDS |
| GACAATGGAAAGTTGAAATC+TGG | 0.400529 | 5.1:-26348979 | None:intergenic |
| AACTCCATGTGGTTTATTAA+GGG | 0.417012 | 5.1:+26348867 | MS.gene45120:CDS |
| AAATGTTTGTTCTGAGGAAA+AGG | 0.425566 | 5.1:-26348268 | None:intergenic |
| GAAAGGTTTGGATGGAATGC+TGG | 0.429285 | 5.1:+26349342 | MS.gene45120:CDS |
| GACTGGTTCAAAACGATCAT+TGG | 0.431072 | 5.1:-26349001 | None:intergenic |
| AAGCTAAGGCTTCACTCAAA+TGG | 0.431669 | 5.1:-26348930 | None:intergenic |
| CTTCCTTCACAAACATAAAA+GGG | 0.432014 | 5.1:-26349044 | None:intergenic |
| AATGAGCTTAAAGGAACAAA+TGG | 0.434585 | 5.1:+26349068 | MS.gene45120:CDS |
| AAATGGGAACAAGAAAGGTT+TGG | 0.437035 | 5.1:+26349330 | MS.gene45120:CDS |
| GACTCCTTTCCATGTACAAA+AGG | 0.456814 | 5.1:+26348119 | MS.gene45120:CDS |
| GCCGAGTCGGTTGCCTCGGA+TGG | 0.459163 | 5.1:+26348844 | MS.gene45120:CDS |
| AGTTGACGCTCGAGCAAAGA+TGG | 0.461286 | 5.1:+26349109 | MS.gene45120:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5.1:+26349240 | MS.gene45120:CDS |
| TCATGCCGAGTCGGTTGCCT+CGG | 0.465997 | 5.1:+26348840 | MS.gene45120:CDS |
| GATTGGTTGATGGAGTGTTA+TGG | 0.478512 | 5.1:+26349250 | MS.gene45120:CDS |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5.1:+26349279 | MS.gene45120:CDS |
| GTTTGGATGGAATGCTGGGA+AGG | 0.480324 | 5.1:+26349347 | MS.gene45120:CDS |
| CAAGGAATCATTTGAAGCTA+AGG | 0.480669 | 5.1:-26348944 | None:intergenic |
| AGAAGGAAGGGGAAGAATCA+AGG | 0.491543 | 5.1:+26348388 | MS.gene45120:CDS |
| CTTTCAGATCCACCACCATC+AGG | 0.493605 | 5.1:+26348154 | MS.gene45120:CDS |
| CTCTTTCTTTGGTTTATGGA+AGG | 0.495028 | 5.1:+26348225 | MS.gene45120:CDS |
| GAATGAAATGGGAACAAGAA+AGG | 0.502774 | 5.1:+26349325 | MS.gene45120:CDS |
| AAAGAGAATGGATAGAAGAA+TGG | 0.506573 | 5.1:+26349464 | MS.gene45120:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.507438 | 5.1:+26349348 | MS.gene45120:CDS |
| ACATCAAATTAGGAGTAAAT+GGG | 0.511504 | 5.1:+26349512 | MS.gene45120:CDS |
| AATTTGTTGATAATGATTGA+AGG | 0.512989 | 5.1:-26348791 | None:intergenic |
| ATCTGGTAGCTTAGAACGCA+AGG | 0.519737 | 5.1:-26348962 | None:intergenic |
| ATTTGTTGATAATGATTGAA+GGG | 0.523333 | 5.1:-26348790 | None:intergenic |
| TGATATTAAAACAAGTCCCT+TGG | 0.523624 | 5.1:+26348765 | MS.gene45120:CDS |
| GGGAACAAGAAAGGTTTGGA+TGG | 0.524181 | 5.1:+26349334 | MS.gene45120:CDS |
| GAAGGAAGGGGAAGAATCAA+GGG | 0.524849 | 5.1:+26348389 | MS.gene45120:CDS |
| TACTATGTCATAAGAAGGAA+GGG | 0.526719 | 5.1:+26348376 | MS.gene45120:CDS |
| GACAATGGTTGATTCAATAC+CGG | 0.528283 | 5.1:-26348343 | None:intergenic |
| ACCGTTACTATGTCATAAGA+AGG | 0.530337 | 5.1:+26348371 | MS.gene45120:CDS |
| AGTTGTTGAAGGAATGAAAT+GGG | 0.530901 | 5.1:+26349314 | MS.gene45120:CDS |
| CCAAGCAAACTTAAATTCAA+AGG | 0.533386 | 5.1:+26348702 | MS.gene45120:CDS |
| TGTTTGATGGAACAAACAAA+TGG | 0.536388 | 5.1:+26349400 | MS.gene45120:CDS |
| GAAATTTAGTTGTTATGTGT+TGG | 0.537435 | 5.1:+26349425 | MS.gene45120:CDS |
| ACTCCATGTGGTTTATTAAG+GGG | 0.540905 | 5.1:+26348868 | MS.gene45120:CDS |
| TCAGACAGAAGTTGCTAAGG+TGG | 0.543470 | 5.1:+26349197 | MS.gene45120:CDS |
| TTACTATGTCATAAGAAGGA+AGG | 0.544789 | 5.1:+26348375 | MS.gene45120:CDS |
| TATTCAGACAGAAGTTGCTA+AGG | 0.549658 | 5.1:+26349194 | MS.gene45120:CDS |
| TTGAGTTTGGAAGTTGTTGA+AGG | 0.550114 | 5.1:+26349303 | MS.gene45120:CDS |
| GTTTATTAAGGGGAAAAGTG+TGG | 0.559295 | 5.1:+26348878 | MS.gene45120:CDS |
| GGTGGATCTGAAAGAGCACT+AGG | 0.560326 | 5.1:-26348145 | None:intergenic |
| TCCATCCGAGGCAACCGACT+CGG | 0.560667 | 5.1:-26348845 | None:intergenic |
| AAAGGTTTGGATGGAATGCT+GGG | 0.561735 | 5.1:+26349343 | MS.gene45120:CDS |
| TTTGGTTTATGGAAGGACAT+TGG | 0.564630 | 5.1:+26348232 | MS.gene45120:CDS |
| AGTTGCTAAGGTGGAAGGAA+AGG | 0.568883 | 5.1:+26349206 | MS.gene45120:CDS |
| AAGTTGTTGAAGGAATGAAA+TGG | 0.568887 | 5.1:+26349313 | MS.gene45120:CDS |
| ACAGAAGTTGCTAAGGTGGA+AGG | 0.571748 | 5.1:+26349201 | MS.gene45120:CDS |
| AATTCAAAGGAAGAAGACAT+TGG | 0.573153 | 5.1:+26348715 | MS.gene45120:CDS |
| TAACCGGAATTTGGACCTGA+TGG | 0.589112 | 5.1:-26348169 | None:intergenic |
| ATGGTTAAATGTTTGTTCTG+AGG | 0.590529 | 5.1:-26348274 | None:intergenic |
| ATAATGATTGAAGGGCTCCA+AGG | 0.592883 | 5.1:-26348782 | None:intergenic |
| TCCTTCTTATGACATAGTAA+CGG | 0.595014 | 5.1:-26348372 | None:intergenic |
| GTTGACGCTCGAGCAAAGAT+GGG | 0.596375 | 5.1:+26349110 | MS.gene45120:CDS |
| TAATGATTGAAGGGCTCCAA+GGG | 0.597144 | 5.1:-26348781 | None:intergenic |
| TCTACCTTCAAAATCACTGA+TGG | 0.603895 | 5.1:-26348293 | None:intergenic |
| GAATTTGGACCTGATGGTGG+TGG | 0.611269 | 5.1:-26348163 | None:intergenic |
| TTTCCCCTTAATAAACCACA+TGG | 0.619760 | 5.1:-26348871 | None:intergenic |
| TCAAAACGATCATTGGACAA+TGG | 0.630976 | 5.1:-26348994 | None:intergenic |
| GCCTCGGATGGAACTCCATG+TGG | 0.631597 | 5.1:+26348856 | MS.gene45120:CDS |
| CAAATGGTAATTTGTAGGAG+CGG | 0.642716 | 5.1:-26348914 | None:intergenic |
| TAGTAACGGTTCGAAGACAA+TGG | 0.651643 | 5.1:-26348358 | None:intergenic |
| ACTATGTCATAAGAAGGAAG+GGG | 0.660728 | 5.1:+26348377 | MS.gene45120:CDS |
| GTGGATCTGAAAGAGCACTA+GGG | 0.671016 | 5.1:-26348144 | None:intergenic |
| ACCACATGGAGTTCCATCCG+AGG | 0.683241 | 5.1:-26348857 | None:intergenic |
| CCGGAATTTGGACCTGATGG+TGG | 0.694514 | 5.1:-26348166 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTTAATTCCATGT+AGG | + | chr5.1:26348443-26348462 | MS.gene45120:intron | 15.0% |
| !! | AATAGCTTAGTTATTATTAG+TGG | + | chr5.1:26348639-26348658 | MS.gene45120:intron | 20.0% |
| !!! | AAGTTTTGTATTAAAGAGAA+TGG | + | chr5.1:26349452-26349471 | MS.gene45120:CDS | 20.0% |
| !!! | AATTTGTTGATAATGATTGA+AGG | - | chr5.1:26348794-26348813 | None:intergenic | 20.0% |
| !!! | AGTTTTAAATAGAAAGTTCA+AGG | + | chr5.1:26348495-26348514 | MS.gene45120:intron | 20.0% |
| !!! | ATTTGTTGATAATGATTGAA+GGG | - | chr5.1:26348793-26348812 | None:intergenic | 20.0% |
| !!! | TTTTAATATCATGGCTAAAA+TGG | - | chr5.1:26348756-26348775 | None:intergenic | 20.0% |
| ! | AAATATTCAAGCACACAAAA+AGG | - | chr5.1:26348566-26348585 | None:intergenic | 25.0% |
| ! | ACATATAATGTTCGATTCTA+AGG | - | chr5.1:26348527-26348546 | None:intergenic | 25.0% |
| ! | ACATCAAATTAGGAGTAAAT+GGG | + | chr5.1:26349512-26349531 | MS.gene45120:CDS | 25.0% |
| ! | ATCCAATATTACAAGATAAC+CGG | - | chr5.1:26348188-26348207 | None:intergenic | 25.0% |
| ! | GAAATTTAGTTGTTATGTGT+TGG | + | chr5.1:26349425-26349444 | MS.gene45120:CDS | 25.0% |
| !!! | TTTTTGGGATGAAAATAGAT+TGG | + | chr5.1:26349233-26349252 | MS.gene45120:CDS | 25.0% |
| AAAGAGAATGGATAGAAGAA+TGG | + | chr5.1:26349464-26349483 | MS.gene45120:CDS | 30.0% | |
| AACTCCATGTGGTTTATTAA+GGG | + | chr5.1:26348867-26348886 | MS.gene45120:CDS | 30.0% | |
| AAGTTGTTGAAGGAATGAAA+TGG | + | chr5.1:26349313-26349332 | MS.gene45120:CDS | 30.0% | |
| AATGAGCTTAAAGGAACAAA+TGG | + | chr5.1:26349068-26349087 | MS.gene45120:CDS | 30.0% | |
| AATTCAAAGGAAGAAGACAT+TGG | + | chr5.1:26348715-26348734 | MS.gene45120:CDS | 30.0% | |
| AGAAAATGTCATGTTTCTTC+CGG | + | chr5.1:26348324-26348343 | MS.gene45120:CDS | 30.0% | |
| AGTTGTTGAAGGAATGAAAT+GGG | + | chr5.1:26349314-26349333 | MS.gene45120:CDS | 30.0% | |
| ATGGTTAAATGTTTGTTCTG+AGG | - | chr5.1:26348277-26348296 | None:intergenic | 30.0% | |
| ATTACAAGATAACCGGAATT+TGG | - | chr5.1:26348181-26348200 | None:intergenic | 30.0% | |
| CACATCAAATTAGGAGTAAA+TGG | + | chr5.1:26349511-26349530 | MS.gene45120:CDS | 30.0% | |
| CCAAGCAAACTTAAATTCAA+AGG | + | chr5.1:26348702-26348721 | MS.gene45120:CDS | 30.0% | |
| CTTCCTTCACAAACATAAAA+GGG | - | chr5.1:26349047-26349066 | None:intergenic | 30.0% | |
| TACTATGTCATAAGAAGGAA+GGG | + | chr5.1:26348376-26348395 | MS.gene45120:CDS | 30.0% | |
| TCCTTCTTATGACATAGTAA+CGG | - | chr5.1:26348375-26348394 | None:intergenic | 30.0% | |
| TGATATTAAAACAAGTCCCT+TGG | + | chr5.1:26348765-26348784 | MS.gene45120:CDS | 30.0% | |
| TGTTTGATGGAACAAACAAA+TGG | + | chr5.1:26349400-26349419 | MS.gene45120:CDS | 30.0% | |
| TTACTATGTCATAAGAAGGA+AGG | + | chr5.1:26348375-26348394 | MS.gene45120:CDS | 30.0% | |
| TTCCGGTTATCTTGTAATAT+TGG | + | chr5.1:26348183-26348202 | MS.gene45120:CDS | 30.0% | |
| ! | ACAAAAGTTGAAGTGTTTGA+TGG | + | chr5.1:26349387-26349406 | MS.gene45120:CDS | 30.0% |
| ! | CATACTCTTTCTTTGGTTTA+TGG | + | chr5.1:26348221-26348240 | MS.gene45120:CDS | 30.0% |
| ! | CCTTTGAATTTAAGTTTGCT+TGG | - | chr5.1:26348705-26348724 | None:intergenic | 30.0% |
| ! | GAAATAAGCAAGAAACGTTT+TGG | + | chr5.1:26348814-26348833 | MS.gene45120:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.1:26349240-26349259 | MS.gene45120:CDS | 30.0% |
| ! | TCACTCAAATGGTAATTTGT+AGG | - | chr5.1:26348922-26348941 | None:intergenic | 30.0% |
| ! | TTAACCATCAGTGATTTTGA+AGG | + | chr5.1:26348289-26348308 | MS.gene45120:CDS | 30.0% |
| !! | AAATGTTTGTTCTGAGGAAA+AGG | - | chr5.1:26348271-26348290 | None:intergenic | 30.0% |
| !!! | AGGGACTTGTTTTAATATCA+TGG | - | chr5.1:26348765-26348784 | None:intergenic | 30.0% |
| AAATGGGAACAAGAAAGGTT+TGG | + | chr5.1:26349330-26349349 | MS.gene45120:CDS | 35.0% | |
| ACCGTTACTATGTCATAAGA+AGG | + | chr5.1:26348371-26348390 | MS.gene45120:CDS | 35.0% | |
| ACTATGTCATAAGAAGGAAG+GGG | + | chr5.1:26348377-26348396 | MS.gene45120:CDS | 35.0% | |
| ACTCCATGTGGTTTATTAAG+GGG | + | chr5.1:26348868-26348887 | MS.gene45120:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+AGG | - | chr5.1:26349048-26349067 | None:intergenic | 35.0% | |
| GAACTCCATGTGGTTTATTA+AGG | + | chr5.1:26348866-26348885 | MS.gene45120:CDS | 35.0% | |
| GAATGAAATGGGAACAAGAA+AGG | + | chr5.1:26349325-26349344 | MS.gene45120:CDS | 35.0% | |
| GACAATGGAAAGTTGAAATC+TGG | - | chr5.1:26348982-26349001 | None:intergenic | 35.0% | |
| GCTCAAACATACTCTTTCTT+TGG | + | chr5.1:26348214-26348233 | MS.gene45120:CDS | 35.0% | |
| GTTTATTAAGGGGAAAAGTG+TGG | + | chr5.1:26348878-26348897 | MS.gene45120:CDS | 35.0% | |
| TATGGAAGGACATTGGTATT+GGG | + | chr5.1:26348239-26348258 | MS.gene45120:CDS | 35.0% | |
| TATTCAGACAGAAGTTGCTA+AGG | + | chr5.1:26349194-26349213 | MS.gene45120:CDS | 35.0% | |
| TCAAAACGATCATTGGACAA+TGG | - | chr5.1:26348997-26349016 | None:intergenic | 35.0% | |
| TCAGACACTCACATCAAATT+AGG | + | chr5.1:26349502-26349521 | MS.gene45120:CDS | 35.0% | |
| TCTACCTTCAAAATCACTGA+TGG | - | chr5.1:26348296-26348315 | None:intergenic | 35.0% | |
| TTATGGAAGGACATTGGTAT+TGG | + | chr5.1:26348238-26348257 | MS.gene45120:CDS | 35.0% | |
| TTGAGTTTGGAAGTTGTTGA+AGG | + | chr5.1:26349303-26349322 | MS.gene45120:CDS | 35.0% | |
| TTTCCCCTTAATAAACCACA+TGG | - | chr5.1:26348874-26348893 | None:intergenic | 35.0% | |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5.1:26349279-26349298 | MS.gene45120:CDS | 35.0% |
| ! | CAAATGGTAATTTGTAGGAG+CGG | - | chr5.1:26348917-26348936 | None:intergenic | 35.0% |
| ! | CAAGGAATCATTTGAAGCTA+AGG | - | chr5.1:26348947-26348966 | None:intergenic | 35.0% |
| ! | CCTTTTATGTTTGTGAAGGA+AGG | + | chr5.1:26349045-26349064 | MS.gene45120:CDS | 35.0% |
| ! | CTCTTTCTTTGGTTTATGGA+AGG | + | chr5.1:26348225-26348244 | MS.gene45120:CDS | 35.0% |
| ! | GACAATGGTTGATTCAATAC+CGG | - | chr5.1:26348346-26348365 | None:intergenic | 35.0% |
| ! | TGAATTTAAGTTTGCTTGGC+TGG | - | chr5.1:26348701-26348720 | None:intergenic | 35.0% |
| ! | TTGCCCTTTTATGTTTGTGA+AGG | + | chr5.1:26349041-26349060 | MS.gene45120:CDS | 35.0% |
| ! | TTTGGTTTATGGAAGGACAT+TGG | + | chr5.1:26348232-26348251 | MS.gene45120:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.1:26349290-26349309 | MS.gene45120:CDS | 35.0% |
| AAAGGTTTGGATGGAATGCT+GGG | + | chr5.1:26349343-26349362 | MS.gene45120:CDS | 40.0% | |
| AACCAGTCGTTGTTGGAAAA+TGG | + | chr5.1:26349016-26349035 | MS.gene45120:CDS | 40.0% | |
| AAGCTAAGGCTTCACTCAAA+TGG | - | chr5.1:26348933-26348952 | None:intergenic | 40.0% | |
| ATAATGATTGAAGGGCTCCA+AGG | - | chr5.1:26348785-26348804 | None:intergenic | 40.0% | |
| GAAGGAAGGAATGAGCTTAA+AGG | + | chr5.1:26349059-26349078 | MS.gene45120:CDS | 40.0% | |
| GACTCCTTTCCATGTACAAA+AGG | + | chr5.1:26348119-26348138 | MS.gene45120:CDS | 40.0% | |
| TAATGATTGAAGGGCTCCAA+GGG | - | chr5.1:26348784-26348803 | None:intergenic | 40.0% | |
| TAGTAACGGTTCGAAGACAA+TGG | - | chr5.1:26348361-26348380 | None:intergenic | 40.0% | |
| ! | ACTAGGGTTCCTTTTGTACA+TGG | - | chr5.1:26348131-26348150 | None:intergenic | 40.0% |
| ! | GACTGGTTCAAAACGATCAT+TGG | - | chr5.1:26349004-26349023 | None:intergenic | 40.0% |
| ! | GGTTCCTTTTGTACATGGAA+AGG | - | chr5.1:26348126-26348145 | None:intergenic | 40.0% |
| ! | TACCATTTTCCAACAACGAC+TGG | - | chr5.1:26349021-26349040 | None:intergenic | 40.0% |
| ! | TGGAAGGAAAGGATGCTTTT+TGG | + | chr5.1:26349217-26349236 | MS.gene45120:CDS | 40.0% |
| !! | GATTGGTTGATGGAGTGTTA+TGG | + | chr5.1:26349250-26349269 | MS.gene45120:CDS | 40.0% |
| !! | GGAAGGAAAGGATGCTTTTT+GGG | + | chr5.1:26349218-26349237 | MS.gene45120:CDS | 40.0% |
| !!! | TTTTGGTTTTCATGCCGAGT+CGG | + | chr5.1:26348831-26348850 | MS.gene45120:CDS | 40.0% |
| ACAGAAGTTGCTAAGGTGGA+AGG | + | chr5.1:26349201-26349220 | MS.gene45120:CDS | 45.0% | |
| AGAAGGAAGGGGAAGAATCA+AGG | + | chr5.1:26348388-26348407 | MS.gene45120:CDS | 45.0% | |
| AGTTGCTAAGGTGGAAGGAA+AGG | + | chr5.1:26349206-26349225 | MS.gene45120:CDS | 45.0% | |
| ATCTGGTAGCTTAGAACGCA+AGG | - | chr5.1:26348965-26348984 | None:intergenic | 45.0% | |
| GAAAGGTTTGGATGGAATGC+TGG | + | chr5.1:26349342-26349361 | MS.gene45120:CDS | 45.0% | |
| GAAGGAAGGGGAAGAATCAA+GGG | + | chr5.1:26348389-26348408 | MS.gene45120:CDS | 45.0% | |
| GGGAACAAGAAAGGTTTGGA+TGG | + | chr5.1:26349334-26349353 | MS.gene45120:CDS | 45.0% | |
| TAACCGGAATTTGGACCTGA+TGG | - | chr5.1:26348172-26348191 | None:intergenic | 45.0% | |
| TCAGACAGAAGTTGCTAAGG+TGG | + | chr5.1:26349197-26349216 | MS.gene45120:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5.1:26349348-26349367 | MS.gene45120:CDS | 45.0% | |
| !! | CGTTTTGAACCAGTCGTTGT+TGG | + | chr5.1:26349009-26349028 | MS.gene45120:CDS | 45.0% |
| !! | GTGGATCTGAAAGAGCACTA+GGG | - | chr5.1:26348147-26348166 | None:intergenic | 45.0% |
| AGTTGACGCTCGAGCAAAGA+TGG | + | chr5.1:26349109-26349128 | MS.gene45120:CDS | 50.0% | |
| CCACCATCAGGTCCAAATTC+CGG | + | chr5.1:26348166-26348185 | MS.gene45120:CDS | 50.0% | |
| CTTTCAGATCCACCACCATC+AGG | + | chr5.1:26348154-26348173 | MS.gene45120:CDS | 50.0% | |
| GTTGACGCTCGAGCAAAGAT+GGG | + | chr5.1:26349110-26349129 | MS.gene45120:CDS | 50.0% | |
| GTTTGGATGGAATGCTGGGA+AGG | + | chr5.1:26349347-26349366 | MS.gene45120:CDS | 50.0% | |
| TTCCATGTAGGTAGCTCAGC+TGG | + | chr5.1:26348455-26348474 | MS.gene45120:intron | 50.0% | |
| !! | GAATTTGGACCTGATGGTGG+TGG | - | chr5.1:26348166-26348185 | None:intergenic | 50.0% |
| !! | GGTGGATCTGAAAGAGCACT+AGG | - | chr5.1:26348148-26348167 | None:intergenic | 50.0% |
| ACCACATGGAGTTCCATCCG+AGG | - | chr5.1:26348860-26348879 | None:intergenic | 55.0% | |
| CACCAGCTGAGCTACCTACA+TGG | - | chr5.1:26348460-26348479 | None:intergenic | 55.0% | |
| CCGGAATTTGGACCTGATGG+TGG | - | chr5.1:26348169-26348188 | None:intergenic | 55.0% | |
| GCCTCGGATGGAACTCCATG+TGG | + | chr5.1:26348856-26348875 | MS.gene45120:CDS | 60.0% | |
| TCATGCCGAGTCGGTTGCCT+CGG | + | chr5.1:26348840-26348859 | MS.gene45120:CDS | 60.0% | |
| TCCATCCGAGGCAACCGACT+CGG | - | chr5.1:26348848-26348867 | None:intergenic | 60.0% | |
| GCCGAGTCGGTTGCCTCGGA+TGG | + | chr5.1:26348844-26348863 | MS.gene45120:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 26348106 | 26349539 | 26348106 | ID=MS.gene45120 |
| chr5.1 | mRNA | 26348106 | 26349539 | 26348106 | ID=MS.gene45120.t1;Parent=MS.gene45120 |
| chr5.1 | exon | 26348106 | 26348410 | 26348106 | ID=MS.gene45120.t1.exon1;Parent=MS.gene45120.t1 |
| chr5.1 | CDS | 26348106 | 26348410 | 26348106 | ID=cds.MS.gene45120.t1;Parent=MS.gene45120.t1 |
| chr5.1 | exon | 26348702 | 26349539 | 26348702 | ID=MS.gene45120.t1.exon2;Parent=MS.gene45120.t1 |
| chr5.1 | CDS | 26348702 | 26349539 | 26348702 | ID=cds.MS.gene45120.t1;Parent=MS.gene45120.t1 |
| Gene Sequence |
| Protein sequence |
