Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45119.t1 | XP_013453735.1 | 81.6 | 381 | 43 | 2 | 1 | 356 | 1 | 379 | 2.50E-175 | 624.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45119.t1 | A0A072UEA2 | 81.6 | 381 | 43 | 2 | 1 | 356 | 1 | 379 | 1.8e-175 | 624.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051946 | MS.gene45119 | 0.806631 | 7.49E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene45119 | 0.812907 | 3.35E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027539 | MS.gene45119 | PPI |
| MS.gene68293 | MS.gene45119 | PPI |
| MS.gene45119 | MS.gene45120 | PPI |
| MS.gene45119 | MS.gene45118 | PPI |
| MS.gene027535 | MS.gene45119 | PPI |
| MS.gene027538 | MS.gene45119 | PPI |
| MS.gene45115 | MS.gene45119 | PPI |
| MS.gene45119 | MS.gene78745 | PPI |
| MS.gene027540 | MS.gene45119 | PPI |
| MS.gene43936 | MS.gene45119 | PPI |
| MS.gene45118 | MS.gene45119 | PPI |
| MS.gene68296 | MS.gene45119 | PPI |
| MS.gene45119 | MS.gene027536 | PPI |
| MS.gene68292 | MS.gene45119 | PPI |
| MS.gene027543 | MS.gene45119 | PPI |
| MS.gene45117 | MS.gene45119 | PPI |
| MS.gene45119 | MS.gene042700 | PPI |
| MS.gene68297 | MS.gene45119 | PPI |
| MS.gene68295 | MS.gene45119 | PPI |
| MS.gene43935 | MS.gene45119 | PPI |
| MS.gene45114 | MS.gene45119 | PPI |
| MS.gene027544 | MS.gene45119 | PPI |
| MS.gene027534 | MS.gene45119 | PPI |
| MS.gene45120 | MS.gene45119 | PPI |
| MS.gene027537 | MS.gene45119 | PPI |
| MS.gene45116 | MS.gene45119 | PPI |
| MS.gene68298 | MS.gene45119 | PPI |
| MS.gene45119 | MS.gene053932 | PPI |
| MS.gene045965 | MS.gene45119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45119.t1 | MTR_5g035665 | 81.627 | 381 | 43 | 2 | 1 | 356 | 1 | 379 | 0.0 | 634 |
| MS.gene45119.t1 | MTR_5g035750 | 80.206 | 389 | 42 | 3 | 1 | 356 | 1 | 387 | 0.0 | 627 |
| MS.gene45119.t1 | MTR_5g035690 | 80.412 | 388 | 42 | 3 | 1 | 356 | 1 | 386 | 0.0 | 626 |
| MS.gene45119.t1 | MTR_5g035670 | 77.953 | 381 | 59 | 1 | 1 | 356 | 1 | 381 | 0.0 | 601 |
| MS.gene45119.t1 | MTR_5g035760 | 68.947 | 380 | 94 | 1 | 1 | 356 | 1 | 380 | 0.0 | 528 |
| MS.gene45119.t1 | MTR_6g472110 | 47.146 | 403 | 162 | 13 | 1 | 356 | 1 | 399 | 5.75e-107 | 319 |
| MS.gene45119.t1 | MTR_6g016660 | 39.702 | 403 | 191 | 11 | 1 | 356 | 1 | 398 | 1.89e-85 | 264 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45119.t1 | AT1G13480 | 40.806 | 397 | 184 | 11 | 1 | 356 | 1 | 387 | 6.44e-86 | 265 |
| MS.gene45119.t1 | AT1G13530 | 40.759 | 395 | 185 | 11 | 1 | 356 | 1 | 385 | 1.74e-83 | 258 |
| MS.gene45119.t1 | AT1G13510 | 38.776 | 392 | 192 | 11 | 1 | 356 | 1 | 380 | 2.32e-83 | 258 |
| MS.gene45119.t1 | AT1G13520 | 40.201 | 398 | 185 | 12 | 1 | 356 | 1 | 387 | 2.59e-83 | 258 |
| MS.gene45119.t1 | AT1G13490 | 40.306 | 392 | 188 | 11 | 1 | 356 | 1 | 382 | 2.11e-82 | 256 |
| MS.gene45119.t1 | AT1G13490 | 41.114 | 377 | 187 | 12 | 1 | 356 | 1 | 363 | 2.87e-80 | 249 |
| MS.gene45119.t1 | AT1G13540 | 39.695 | 393 | 188 | 12 | 1 | 356 | 1 | 381 | 1.03e-79 | 249 |
| MS.gene45119.t1 | AT1G13550 | 38.481 | 395 | 191 | 12 | 1 | 353 | 1 | 385 | 7.10e-77 | 242 |
| MS.gene45119.t1 | AT1G13470 | 39.541 | 392 | 187 | 12 | 1 | 356 | 1 | 378 | 4.00e-74 | 234 |
| MS.gene45119.t1 | AT1G61600 | 37.150 | 428 | 190 | 15 | 1 | 356 | 1 | 421 | 1.51e-70 | 226 |
| MS.gene45119.t1 | AT1G13500 | 38.636 | 396 | 193 | 13 | 1 | 356 | 1 | 386 | 1.73e-69 | 223 |
Find 79 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | 5.1:-26345755 | None:intergenic |
| TTCAAGTTATCTTGTGATAT+TGG | 0.212889 | 5.1:+26345760 | MS.gene45119:CDS |
| AAAATTGGAAAGTTGAAATT+TGG | 0.220039 | 5.1:-26346471 | None:intergenic |
| CCTTCCTTCACAAACATAAA+TGG | 0.225580 | 5.1:-26346537 | None:intergenic |
| AGCCTAAAGCTTGGCTTAAA+TGG | 0.235862 | 5.1:-26346422 | None:intergenic |
| GAGGAGAATGGATACAAAAT+TGG | 0.267080 | 5.1:+26346956 | MS.gene45119:CDS |
| GCTCAAACTTACTCTTGTTT+TGG | 0.300774 | 5.1:+26345791 | MS.gene45119:CDS |
| GAAGGAAGGAATGAATTTAA+AGG | 0.316001 | 5.1:+26346551 | MS.gene45119:CDS |
| TTGAAGGAACGGACGCTGTT+TGG | 0.322013 | 5.1:+26346709 | MS.gene45119:CDS |
| ACAGACACTCACATCAAATT+AGG | 0.335727 | 5.1:+26346994 | MS.gene45119:CDS |
| GCCTCAGATGGAATTCCTCC+TGG | 0.354070 | 5.1:+26346348 | MS.gene45119:CDS |
| CACATCAAATTAGGAGCAAA+TGG | 0.354134 | 5.1:+26347003 | MS.gene45119:CDS |
| TTGGCTTAAATGGTGGTTGC+GGG | 0.360622 | 5.1:-26346412 | None:intergenic |
| TCAAAGGAAAATGAAAATAG+TGG | 0.372912 | 5.1:+26346636 | MS.gene45119:CDS |
| AAGTTATTCTTTGAGGAGAA+TGG | 0.403630 | 5.1:+26346944 | MS.gene45119:CDS |
| TGATGTTCAACCAAGAGCTT+TGG | 0.405293 | 5.1:+26346257 | MS.gene45119:CDS |
| CCTTTGAACTTGTACTAGCT+TGG | 0.411881 | 5.1:-26346194 | None:intergenic |
| AAATGGGAACAAAGAAGGTT+TGG | 0.414421 | 5.1:+26346822 | MS.gene45119:CDS |
| AGAAGGTTTGGATGGAATGT+TGG | 0.415149 | 5.1:+26346834 | MS.gene45119:CDS |
| TGAAGGAACGGACGCTGTTT+GGG | 0.429711 | 5.1:+26346710 | MS.gene45119:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5.1:+26346601 | MS.gene45119:CDS |
| CACCATTTAAGCCAAGCTTT+AGG | 0.434225 | 5.1:+26346420 | MS.gene45119:CDS |
| GAATGAACATAGCTTCTTCA+TGG | 0.436065 | 5.1:-26345901 | None:intergenic |
| ACAGAAGTTGCTAATGTTGA+AGG | 0.436092 | 5.1:+26346693 | MS.gene45119:CDS |
| GAAGGTTTGGATGGAATGTT+GGG | 0.439478 | 5.1:+26346835 | MS.gene45119:CDS |
| GCCCTTCAATGATTATCAAC+AGG | 0.448229 | 5.1:+26346281 | MS.gene45119:CDS |
| TTAACCATCAAGTATTCATC+AGG | 0.448760 | 5.1:+26345866 | MS.gene45119:CDS |
| GAATTTGGCCCTGATGGTGG+TGG | 0.453647 | 5.1:-26345740 | None:intergenic |
| CTATCAGACCCACCACCATC+AGG | 0.458752 | 5.1:+26345731 | MS.gene45119:CDS |
| AAATTCTTGTTCTGAGGGAT+AGG | 0.460112 | 5.1:-26345845 | None:intergenic |
| TGGTTGAAAGTTATTCTTTG+AGG | 0.464463 | 5.1:+26346937 | MS.gene45119:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5.1:+26346732 | MS.gene45119:CDS |
| TACCTGTTGATAATCATTGA+AGG | 0.466990 | 5.1:-26346283 | None:intergenic |
| TTGAAGGGCTCCAAAGCTCT+TGG | 0.473283 | 5.1:-26346267 | None:intergenic |
| GAATTCCTCCTGGGTTATTG+AGG | 0.475186 | 5.1:+26346358 | MS.gene45119:CDS |
| TTCACCTGATGAATACTTGA+TGG | 0.482910 | 5.1:-26345870 | None:intergenic |
| AAGTTGTTGAGGCGATGAAA+TGG | 0.484659 | 5.1:+26346805 | MS.gene45119:CDS |
| TGTTTGGGATGAAAATAGAT+TGG | 0.492208 | 5.1:+26346725 | MS.gene45119:CDS |
| ATGGTTAAATTCTTGTTCTG+AGG | 0.492295 | 5.1:-26345851 | None:intergenic |
| TGTTCTGAATCAGTGATTGT+TGG | 0.495520 | 5.1:+26346501 | MS.gene45119:CDS |
| ACAAAAGTTGAGGAGTTTGA+AGG | 0.496121 | 5.1:+26346879 | MS.gene45119:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.1:+26346537 | MS.gene45119:CDS |
| TAGTACAAGTTCAAAGGAAG+AGG | 0.499206 | 5.1:+26346200 | MS.gene45119:CDS |
| CTTGGCTTAAATGGTGGTTG+CGG | 0.507449 | 5.1:-26346413 | None:intergenic |
| GCAAAATCAGTTGCCTCAGA+TGG | 0.507539 | 5.1:+26346336 | MS.gene45119:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.514101 | 5.1:-26345739 | None:intergenic |
| CCAAGCTAGTACAAGTTCAA+AGG | 0.520879 | 5.1:+26346194 | MS.gene45119:CDS |
| GGGAACAAAGAAGGTTTGGA+TGG | 0.521569 | 5.1:+26346826 | MS.gene45119:CDS |
| CCTCAGATGGAATTCCTCCT+GGG | 0.522046 | 5.1:+26346349 | MS.gene45119:CDS |
| TGGTTAAATTCTTGTTCTGA+GGG | 0.523312 | 5.1:-26345850 | None:intergenic |
| TTTGGATGGAATGTTGGGAA+TGG | 0.530828 | 5.1:+26346840 | MS.gene45119:CDS |
| CGATGAAATGGGAACAAAGA+AGG | 0.534165 | 5.1:+26346817 | MS.gene45119:CDS |
| ACATCAAATTAGGAGCAAAT+GGG | 0.536534 | 5.1:+26347004 | MS.gene45119:CDS |
| GAACATAGCTTCTTCATGGC+GGG | 0.536859 | 5.1:-26345897 | None:intergenic |
| GAAAATGAAAATAGTGGAGA+AGG | 0.537296 | 5.1:+26346642 | MS.gene45119:CDS |
| TTATCTTGTGATATTGGATG+AGG | 0.537375 | 5.1:+26345766 | MS.gene45119:CDS |
| GAAATTTAGTTGTTATGTGT+TGG | 0.537435 | 5.1:+26346917 | MS.gene45119:CDS |
| AGTTTGAAGGAGCAAATAAG+TGG | 0.542799 | 5.1:+26346892 | MS.gene45119:CDS |
| ATTTGGTAGCTTCGAACGCA+AGG | 0.544069 | 5.1:-26346454 | None:intergenic |
| ACCTGTTGATAATCATTGAA+GGG | 0.546054 | 5.1:-26346282 | None:intergenic |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | 5.1:-26345746 | None:intergenic |
| AGTTGTTGAGGCGATGAAAT+GGG | 0.564068 | 5.1:+26346806 | MS.gene45119:CDS |
| AATCATTTGAGCCTAAAGCT+TGG | 0.566503 | 5.1:-26346431 | None:intergenic |
| CTAAAGCTTGGCTTAAATGG+TGG | 0.584507 | 5.1:-26346419 | None:intergenic |
| CATAGCTTCTTCATGGCGGG+TGG | 0.584589 | 5.1:-26345894 | None:intergenic |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.1:+26346533 | MS.gene45119:CDS |
| GGTGGGTCTGATAGAGCACT+AGG | 0.587046 | 5.1:-26345722 | None:intergenic |
| AATGAAAATAGTGGAGAAGG+TGG | 0.590819 | 5.1:+26346645 | MS.gene45119:CDS |
| AGTGAGAGTAACAAAAGTTG+AGG | 0.593305 | 5.1:+26346869 | MS.gene45119:CDS |
| TGGCTTAAATGGTGGTTGCG+GGG | 0.603595 | 5.1:-26346411 | None:intergenic |
| CCCAGGAGGAATTCCATCTG+AGG | 0.605151 | 5.1:-26346349 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | 5.1:-26345743 | None:intergenic |
| AGTTGCTAATGTTGAAGGAA+CGG | 0.611267 | 5.1:+26346698 | MS.gene45119:CDS |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5.1:+26346602 | MS.gene45119:CDS |
| AGTACAAGTTCAAAGGAAGA+GGG | 0.618936 | 5.1:+26346201 | MS.gene45119:CDS |
| AATCAGTGATTGTTGGAAAG+TGG | 0.623751 | 5.1:+26346508 | MS.gene45119:CDS |
| TATCAGACCCACCACCATCA+GGG | 0.637745 | 5.1:+26345732 | MS.gene45119:CDS |
| TGAACATAGCTTCTTCATGG+CGG | 0.672652 | 5.1:-26345898 | None:intergenic |
| AAAACTACAGCAAAAGCATG+TGG | 0.702446 | 5.1:-26346229 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGGAAAGTTGAAATT+TGG | - | chr5.1:26346474-26346493 | None:intergenic | 20.0% |
| !! | ATAGATTCATAAAGTAATAG+TGG | + | chr5.1:26346132-26346151 | MS.gene45119:intron | 20.0% |
| !! | GAAATAATCAAAAAAGGTTA+TGG | + | chr5.1:26346306-26346325 | MS.gene45119:CDS | 20.0% |
| !! | TCAGAACAATCATTAAAAAT+TGG | - | chr5.1:26346489-26346508 | None:intergenic | 20.0% |
| !! | TGGTAATTAATTAACTTTCA+TGG | + | chr5.1:26346092-26346111 | MS.gene45119:intron | 20.0% |
| !!! | AGACGTAATTATATTTTTGT+TGG | + | chr5.1:26346072-26346091 | MS.gene45119:intron | 20.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5.1:26345758-26345777 | None:intergenic | 25.0% |
| ! | CAGGTAGAAATAATCAAAAA+AGG | + | chr5.1:26346300-26346319 | MS.gene45119:CDS | 25.0% |
| ! | GAAATTTAGTTGTTATGTGT+TGG | + | chr5.1:26346917-26346936 | MS.gene45119:CDS | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5.1:26345956-26345975 | MS.gene45119:intron | 25.0% |
| ! | TCAAAGGAAAATGAAAATAG+TGG | + | chr5.1:26346636-26346655 | MS.gene45119:CDS | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+TGG | + | chr5.1:26345760-26345779 | MS.gene45119:CDS | 25.0% |
| ACATCAAATTAGGAGCAAAT+GGG | + | chr5.1:26347004-26347023 | MS.gene45119:CDS | 30.0% | |
| ACTATGTTATAAGAAGGAAG+GGG | + | chr5.1:26345957-26345976 | MS.gene45119:intron | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5.1:26345951-26345970 | MS.gene45119:intron | 30.0% | |
| ATGGTTAAATTCTTGTTCTG+AGG | - | chr5.1:26345854-26345873 | None:intergenic | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5.1:26345955-26345974 | MS.gene45119:intron | 30.0% | |
| GAAAAAAAGGTGGAAACTTA+AGG | + | chr5.1:26346380-26346399 | MS.gene45119:CDS | 30.0% | |
| GAAGGAAGGAATGAATTTAA+AGG | + | chr5.1:26346551-26346570 | MS.gene45119:CDS | 30.0% | |
| TGAGAGAAAAACTTGTACAA+TGG | - | chr5.1:26346027-26346046 | None:intergenic | 30.0% | |
| TGGTTAAATTCTTGTTCTGA+GGG | - | chr5.1:26345853-26345872 | None:intergenic | 30.0% | |
| TGGTTGAAAGTTATTCTTTG+AGG | + | chr5.1:26346937-26346956 | MS.gene45119:CDS | 30.0% | |
| TTAACCATCAAGTATTCATC+AGG | + | chr5.1:26345866-26345885 | MS.gene45119:CDS | 30.0% | |
| TTATCTTGTGATATTGGATG+AGG | + | chr5.1:26345766-26345785 | MS.gene45119:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.1:26346533-26346552 | MS.gene45119:CDS | 30.0% | |
| ! | AAGTTATTCTTTGAGGAGAA+TGG | + | chr5.1:26346944-26346963 | MS.gene45119:CDS | 30.0% |
| ! | AAGTTTTTCTCTCATGTCAA+CGG | + | chr5.1:26346033-26346052 | MS.gene45119:intron | 30.0% |
| ! | ACTAGGATTCTTTTTGTACA+TGG | - | chr5.1:26345708-26345727 | None:intergenic | 30.0% |
| ! | GAAAATGAAAATAGTGGAGA+AGG | + | chr5.1:26346642-26346661 | MS.gene45119:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.1:26346732-26346751 | MS.gene45119:CDS | 30.0% |
| ! | TGTTTGGGATGAAAATAGAT+TGG | + | chr5.1:26346725-26346744 | MS.gene45119:CDS | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5.1:26346285-26346304 | None:intergenic | 30.0% |
| !! | AGTGTTGATGAGAAAAATGT+TGG | + | chr5.1:26346771-26346790 | MS.gene45119:CDS | 30.0% |
| !! | TACCTGTTGATAATCATTGA+AGG | - | chr5.1:26346286-26346305 | None:intergenic | 30.0% |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5.1:26346620-26346639 | MS.gene45119:CDS | 30.0% |
| !!! | ATTGAGTTTTGAAGTTGTTG+AGG | + | chr5.1:26346794-26346813 | MS.gene45119:CDS | 30.0% |
| AAATGGGAACAAAGAAGGTT+TGG | + | chr5.1:26346822-26346841 | MS.gene45119:CDS | 35.0% | |
| AATCAGTGATTGTTGGAAAG+TGG | + | chr5.1:26346508-26346527 | MS.gene45119:CDS | 35.0% | |
| AATCATTTGAGCCTAAAGCT+TGG | - | chr5.1:26346434-26346453 | None:intergenic | 35.0% | |
| ACAAAAGTTGAGGAGTTTGA+AGG | + | chr5.1:26346879-26346898 | MS.gene45119:CDS | 35.0% | |
| ACAGAAGTTGCTAATGTTGA+AGG | + | chr5.1:26346693-26346712 | MS.gene45119:CDS | 35.0% | |
| ACAGACACTCACATCAAATT+AGG | + | chr5.1:26346994-26347013 | MS.gene45119:CDS | 35.0% | |
| AGTACAAGTTCAAAGGAAGA+GGG | + | chr5.1:26346201-26346220 | MS.gene45119:CDS | 35.0% | |
| AGTGAGAGTAACAAAAGTTG+AGG | + | chr5.1:26346869-26346888 | MS.gene45119:CDS | 35.0% | |
| AGTTGCTAATGTTGAAGGAA+CGG | + | chr5.1:26346698-26346717 | MS.gene45119:CDS | 35.0% | |
| AGTTTGAAGGAGCAAATAAG+TGG | + | chr5.1:26346892-26346911 | MS.gene45119:CDS | 35.0% | |
| CACATCAAATTAGGAGCAAA+TGG | + | chr5.1:26347003-26347022 | MS.gene45119:CDS | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.1:26346537-26346556 | MS.gene45119:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.1:26346540-26346559 | None:intergenic | 35.0% | |
| CTGGGTTATTGAGGAAAAAA+AGG | + | chr5.1:26346367-26346386 | MS.gene45119:CDS | 35.0% | |
| GAATGAACATAGCTTCTTCA+TGG | - | chr5.1:26345904-26345923 | None:intergenic | 35.0% | |
| GAGGAGAATGGATACAAAAT+TGG | + | chr5.1:26346956-26346975 | MS.gene45119:CDS | 35.0% | |
| GGTTATTGAGGAAAAAAAGG+TGG | + | chr5.1:26346370-26346389 | MS.gene45119:CDS | 35.0% | |
| TAGTACAAGTTCAAAGGAAG+AGG | + | chr5.1:26346200-26346219 | MS.gene45119:CDS | 35.0% | |
| TTCACCTGATGAATACTTGA+TGG | - | chr5.1:26345873-26345892 | None:intergenic | 35.0% | |
| ! | AAAACTACAGCAAAAGCATG+TGG | - | chr5.1:26346232-26346251 | None:intergenic | 35.0% |
| ! | AATGAAAATAGTGGAGAAGG+TGG | + | chr5.1:26346645-26346664 | MS.gene45119:CDS | 35.0% |
| ! | GACAATGGTTGATTCAATAC+TGG | - | chr5.1:26345926-26345945 | None:intergenic | 35.0% |
| ! | TGTTCTGAATCAGTGATTGT+TGG | + | chr5.1:26346501-26346520 | MS.gene45119:CDS | 35.0% |
| !! | AAATTCTTGTTCTGAGGGAT+AGG | - | chr5.1:26345848-26345867 | None:intergenic | 35.0% |
| !! | GCTCAAACTTACTCTTGTTT+TGG | + | chr5.1:26345791-26345810 | MS.gene45119:CDS | 35.0% |
| !!! | CTTTTTTTCCTCAATAACCC+AGG | - | chr5.1:26346369-26346388 | None:intergenic | 35.0% |
| AAGTTGTTGAGGCGATGAAA+TGG | + | chr5.1:26346805-26346824 | MS.gene45119:CDS | 40.0% | |
| AGAAGGAAGGGGAAATATCA+AGG | + | chr5.1:26345968-26345987 | MS.gene45119:intron | 40.0% | |
| AGAAGGTTTGGATGGAATGT+TGG | + | chr5.1:26346834-26346853 | MS.gene45119:CDS | 40.0% | |
| AGCCTAAAGCTTGGCTTAAA+TGG | - | chr5.1:26346425-26346444 | None:intergenic | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5.1:26346601-26346620 | MS.gene45119:CDS | 40.0% | |
| AGTTGTTGAGGCGATGAAAT+GGG | + | chr5.1:26346806-26346825 | MS.gene45119:CDS | 40.0% | |
| CACCATTTAAGCCAAGCTTT+AGG | + | chr5.1:26346420-26346439 | MS.gene45119:CDS | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | + | chr5.1:26346194-26346213 | MS.gene45119:CDS | 40.0% | |
| CCTTTGAACTTGTACTAGCT+TGG | - | chr5.1:26346197-26346216 | None:intergenic | 40.0% | |
| CGATGAAATGGGAACAAAGA+AGG | + | chr5.1:26346817-26346836 | MS.gene45119:CDS | 40.0% | |
| CTAAAGCTTGGCTTAAATGG+TGG | - | chr5.1:26346422-26346441 | None:intergenic | 40.0% | |
| GAAGGAAGGGGAAATATCAA+GGG | + | chr5.1:26345969-26345988 | MS.gene45119:intron | 40.0% | |
| GAAGGTTTGGATGGAATGTT+GGG | + | chr5.1:26346835-26346854 | MS.gene45119:CDS | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5.1:26346281-26346300 | MS.gene45119:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5.1:26346602-26346621 | MS.gene45119:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5.1:26345749-26345768 | None:intergenic | 40.0% | |
| TAGTAGCGATTCGAAGACAA+TGG | - | chr5.1:26345941-26345960 | None:intergenic | 40.0% | |
| TGAACATAGCTTCTTCATGG+CGG | - | chr5.1:26345901-26345920 | None:intergenic | 40.0% | |
| TGATGTTCAACCAAGAGCTT+TGG | + | chr5.1:26346257-26346276 | MS.gene45119:CDS | 40.0% | |
| TTTGGATGGAATGTTGGGAA+TGG | + | chr5.1:26346840-26346859 | MS.gene45119:CDS | 40.0% | |
| ! | TTTTTCCTCAATAACCCAGG+AGG | - | chr5.1:26346366-26346385 | None:intergenic | 40.0% |
| !!! | CTCTTGTTTTGGTTTGTGCA+AGG | + | chr5.1:26345802-26345821 | MS.gene45119:CDS | 40.0% |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5.1:26346742-26346761 | MS.gene45119:CDS | 40.0% |
| CTTGGCTTAAATGGTGGTTG+CGG | - | chr5.1:26346416-26346435 | None:intergenic | 45.0% | |
| GAACATAGCTTCTTCATGGC+GGG | - | chr5.1:26345900-26345919 | None:intergenic | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | + | chr5.1:26346358-26346377 | MS.gene45119:CDS | 45.0% | |
| GCAAAATCAGTTGCCTCAGA+TGG | + | chr5.1:26346336-26346355 | MS.gene45119:CDS | 45.0% | |
| GGGAACAAAGAAGGTTTGGA+TGG | + | chr5.1:26346826-26346845 | MS.gene45119:CDS | 45.0% | |
| TTGGCTTAAATGGTGGTTGC+GGG | - | chr5.1:26346415-26346434 | None:intergenic | 45.0% | |
| ! | ATTTGGTAGCTTCGAACGCA+AGG | - | chr5.1:26346457-26346476 | None:intergenic | 45.0% |
| CCTCAGATGGAATTCCTCCT+GGG | + | chr5.1:26346349-26346368 | MS.gene45119:CDS | 50.0% | |
| CTTGAATTTGGCCCTGATGG+TGG | - | chr5.1:26345746-26345765 | None:intergenic | 50.0% | |
| TATCAGACCCACCACCATCA+GGG | + | chr5.1:26345732-26345751 | MS.gene45119:CDS | 50.0% | |
| TGAAGGAACGGACGCTGTTT+GGG | + | chr5.1:26346710-26346729 | MS.gene45119:CDS | 50.0% | |
| TGGCTTAAATGGTGGTTGCG+GGG | - | chr5.1:26346414-26346433 | None:intergenic | 50.0% | |
| TTGAAGGAACGGACGCTGTT+TGG | + | chr5.1:26346709-26346728 | MS.gene45119:CDS | 50.0% | |
| TTGAAGGGCTCCAAAGCTCT+TGG | - | chr5.1:26346270-26346289 | None:intergenic | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5.1:26345742-26345761 | None:intergenic | 50.0% |
| CCCAGGAGGAATTCCATCTG+AGG | - | chr5.1:26346352-26346371 | None:intergenic | 55.0% | |
| CTATCAGACCCACCACCATC+AGG | + | chr5.1:26345731-26345750 | MS.gene45119:CDS | 55.0% | |
| GCCTCAGATGGAATTCCTCC+TGG | + | chr5.1:26346348-26346367 | MS.gene45119:CDS | 55.0% | |
| ! | CATAGCTTCTTCATGGCGGG+TGG | - | chr5.1:26345897-26345916 | None:intergenic | 55.0% |
| ! | GGTGGGTCTGATAGAGCACT+AGG | - | chr5.1:26345725-26345744 | None:intergenic | 55.0% |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5.1:26345743-26345762 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 26345683 | 26347031 | 26345683 | ID=MS.gene45119 |
| chr5.1 | mRNA | 26345683 | 26347031 | 26345683 | ID=MS.gene45119.t1;Parent=MS.gene45119 |
| chr5.1 | exon | 26345683 | 26345915 | 26345683 | ID=MS.gene45119.t1.exon1;Parent=MS.gene45119.t1 |
| chr5.1 | CDS | 26345683 | 26345915 | 26345683 | ID=cds.MS.gene45119.t1;Parent=MS.gene45119.t1 |
| chr5.1 | exon | 26346194 | 26347031 | 26346194 | ID=MS.gene45119.t1.exon2;Parent=MS.gene45119.t1 |
| chr5.1 | CDS | 26346194 | 26347031 | 26346194 | ID=cds.MS.gene45119.t1;Parent=MS.gene45119.t1 |
| Gene Sequence |
| Protein sequence |
