Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68296.t1 | XP_003613367.1 | 77.1 | 380 | 32 | 1 | 1 | 325 | 1 | 380 | 5.30E-164 | 587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68296.t1 | G7K480 | 77.1 | 380 | 32 | 1 | 1 | 325 | 1 | 380 | 3.8e-164 | 587.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68296 | MS.gene027535 | PPI |
| MS.gene68296 | MS.gene45117 | PPI |
| MS.gene68296 | MS.gene027539 | PPI |
| MS.gene68296 | MS.gene45116 | PPI |
| MS.gene027544 | MS.gene68296 | PPI |
| MS.gene68296 | MS.gene027537 | PPI |
| MS.gene68296 | MS.gene68292 | PPI |
| MS.gene68296 | MS.gene027544 | PPI |
| MS.gene68293 | MS.gene68296 | PPI |
| MS.gene68296 | MS.gene68298 | PPI |
| MS.gene68296 | MS.gene027543 | PPI |
| MS.gene68296 | MS.gene045965 | PPI |
| MS.gene68296 | MS.gene43936 | PPI |
| MS.gene68296 | MS.gene45119 | PPI |
| MS.gene68296 | MS.gene43935 | PPI |
| MS.gene68296 | MS.gene45115 | PPI |
| MS.gene68296 | MS.gene053932 | PPI |
| MS.gene68296 | MS.gene68293 | PPI |
| MS.gene68296 | MS.gene68297 | PPI |
| MS.gene68296 | MS.gene68295 | PPI |
| MS.gene68296 | MS.gene78745 | PPI |
| MS.gene68297 | MS.gene68296 | PPI |
| MS.gene68296 | MS.gene027538 | PPI |
| MS.gene68296 | MS.gene027536 | PPI |
| MS.gene68296 | MS.gene45120 | PPI |
| MS.gene68296 | MS.gene45118 | PPI |
| MS.gene68296 | MS.gene027540 | PPI |
| MS.gene68296 | MS.gene027534 | PPI |
| MS.gene68296 | MS.gene042700 | PPI |
| MS.gene68296 | MS.gene45114 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68296.t1 | MTR_5g035760 | 74.474 | 380 | 42 | 3 | 1 | 325 | 1 | 380 | 0.0 | 559 |
| MS.gene68296.t1 | MTR_5g035665 | 65.092 | 381 | 75 | 3 | 1 | 325 | 1 | 379 | 8.35e-171 | 479 |
| MS.gene68296.t1 | MTR_5g035690 | 63.660 | 388 | 76 | 3 | 1 | 325 | 1 | 386 | 2.60e-168 | 473 |
| MS.gene68296.t1 | MTR_5g035750 | 62.982 | 389 | 78 | 3 | 1 | 325 | 1 | 387 | 2.42e-163 | 461 |
| MS.gene68296.t1 | MTR_5g035670 | 62.205 | 381 | 88 | 2 | 1 | 325 | 1 | 381 | 2.16e-159 | 450 |
| MS.gene68296.t1 | MTR_6g472110 | 41.750 | 400 | 157 | 11 | 1 | 325 | 1 | 399 | 1.03e-86 | 266 |
| MS.gene68296.t1 | MTR_6g016660 | 40.449 | 267 | 142 | 5 | 76 | 325 | 132 | 398 | 2.27e-56 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68296.t1 | AT1G13490 | 39.247 | 372 | 170 | 10 | 1 | 325 | 1 | 363 | 4.58e-66 | 212 |
| MS.gene68296.t1 | AT1G13480 | 36.524 | 397 | 170 | 10 | 1 | 325 | 1 | 387 | 1.92e-65 | 211 |
| MS.gene68296.t1 | AT1G13490 | 38.363 | 391 | 166 | 11 | 1 | 325 | 1 | 382 | 7.17e-64 | 207 |
| MS.gene68296.t1 | AT1G13510 | 35.459 | 392 | 174 | 10 | 1 | 325 | 1 | 380 | 1.02e-62 | 204 |
| MS.gene68296.t1 | AT1G13520 | 36.272 | 397 | 171 | 13 | 1 | 325 | 1 | 387 | 1.98e-60 | 198 |
| MS.gene68296.t1 | AT1G13550 | 34.949 | 392 | 178 | 13 | 1 | 322 | 1 | 385 | 2.47e-59 | 195 |
| MS.gene68296.t1 | AT1G13470 | 34.860 | 393 | 173 | 12 | 1 | 325 | 1 | 378 | 1.56e-53 | 180 |
| MS.gene68296.t1 | AT1G13530 | 44.788 | 259 | 126 | 8 | 75 | 325 | 136 | 385 | 6.43e-53 | 178 |
| MS.gene68296.t1 | AT1G13530 | 50.000 | 64 | 32 | 0 | 1 | 64 | 1 | 64 | 5.96e-12 | 66.2 |
| MS.gene68296.t1 | AT1G13540 | 43.726 | 263 | 130 | 7 | 69 | 325 | 131 | 381 | 4.35e-52 | 176 |
| MS.gene68296.t1 | AT1G13540 | 47.826 | 69 | 32 | 2 | 1 | 65 | 1 | 69 | 5.36e-12 | 66.6 |
| MS.gene68296.t1 | AT1G61600 | 31.991 | 422 | 189 | 11 | 1 | 325 | 1 | 421 | 4.29e-51 | 174 |
| MS.gene68296.t1 | AT1G13500 | 42.586 | 263 | 131 | 9 | 74 | 325 | 133 | 386 | 3.09e-50 | 171 |
Find 74 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGATTTGGATGGATTTC+TGG | 0.112454 | 5.2:+26219497 | MS.gene68296:CDS |
| GAACTCCTTGTGGTTTATTA+AGG | 0.148355 | 5.2:+26219021 | MS.gene68296:CDS |
| CACATCAAATTAGGAGTAAA+TGG | 0.167671 | 5.2:+26219666 | MS.gene68296:CDS |
| ATTACAAGATAACCTGAATT+TGG | 0.200249 | 5.2:-26218285 | None:intergenic |
| TTCAGGTTATCTTGTAATAT+TGG | 0.212889 | 5.2:+26218290 | MS.gene68296:CDS |
| CCTTCCTTCACAAACATAAA+AGG | 0.226109 | 5.2:-26219200 | None:intergenic |
| GCTCAGACTTTCTCTTTCTT+TGG | 0.248445 | 5.2:+26218321 | MS.gene68296:CDS |
| TTGAGTTTGGAAGTTGTTAA+AGG | 0.263829 | 5.2:+26219458 | MS.gene68296:CDS |
| TCAGACACTCACATCAAATT+AGG | 0.282058 | 5.2:+26219657 | MS.gene68296:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5.2:+26219445 | MS.gene68296:CDS |
| GAAATAAGCAAGAAACGTTT+TGG | 0.310305 | 5.2:+26218969 | MS.gene68296:CDS |
| AACCAGTCGTTGTTGGAAAA+TGG | 0.314365 | 5.2:+26219171 | MS.gene68296:CDS |
| CTTTCTCTTTCTTTGGTTTG+TGG | 0.337260 | 5.2:+26218328 | MS.gene68296:CDS |
| CCACCATCAGGTCCAAATTC+AGG | 0.352655 | 5.2:+26218273 | MS.gene68296:CDS |
| AACTCCTTGTGGTTTATTAA+GGG | 0.361842 | 5.2:+26219022 | MS.gene68296:CDS |
| TGTGGAAGGACATTGGTATT+GGG | 0.363284 | 5.2:+26218346 | MS.gene68296:CDS |
| AAAGATTTGGATGGATTTCT+GGG | 0.363362 | 5.2:+26219498 | MS.gene68296:CDS |
| GAAGGAAGGAATGACATTAA+AGG | 0.380941 | 5.2:+26219214 | MS.gene68296:CDS |
| AAATGGGAACAAGAAAGATT+TGG | 0.385031 | 5.2:+26219485 | MS.gene68296:CDS |
| TCACTCAAATGGTAATTTGT+AGG | 0.387265 | 5.2:-26219074 | None:intergenic |
| CTCTTTCTTTGGTTTGTGGA+AGG | 0.394596 | 5.2:+26218332 | MS.gene68296:CDS |
| GACAATAGAAAGTTGAAATC+TGG | 0.400529 | 5.2:-26219134 | None:intergenic |
| TTGTGGAAGGACATTGGTAT+TGG | 0.416602 | 5.2:+26218345 | MS.gene68296:CDS |
| CGTTCTGAACCAGTCGTTGT+TGG | 0.418054 | 5.2:+26219164 | MS.gene68296:CDS |
| TCATGCCGAGTCGGTTGCCT+TGG | 0.428872 | 5.2:+26218995 | MS.gene68296:CDS |
| ACAAAAGTTGAGGAGTTTGA+TGG | 0.435152 | 5.2:+26219542 | MS.gene68296:CDS |
| CTTCAATCATTATCAACAAA+TGG | 0.442238 | 5.2:+26218947 | MS.gene68296:CDS |
| AAGCCAAGGCTTCACTCAAA+TGG | 0.444491 | 5.2:-26219085 | None:intergenic |
| GACTGGTTCAGAACGATCAT+TGG | 0.445272 | 5.2:-26219156 | None:intergenic |
| ACAGAAGATGCTAAGGTTGA+AGG | 0.453239 | 5.2:+26219356 | MS.gene68296:CDS |
| GACTCCTTTCCATGTACAAA+AGG | 0.456814 | 5.2:+26218226 | MS.gene68296:CDS |
| AAGTTGTTAAAGGAATGAAA+TGG | 0.456844 | 5.2:+26219468 | MS.gene68296:CDS |
| GCCGAGTCGGTTGCCTTGGA+TGG | 0.457876 | 5.2:+26218999 | MS.gene68296:CDS |
| AAAGAGAATGGATAGAAGAT+TGG | 0.461207 | 5.2:+26219619 | MS.gene68296:CDS |
| AGTTGACGCTCGAGCAAAGA+TGG | 0.461286 | 5.2:+26219264 | MS.gene68296:CDS |
| AAATGTTTGTTCTGAGGGAA+AGG | 0.464248 | 5.2:-26218375 | None:intergenic |
| GATGAAAATAGATTGGTTGA+TGG | 0.464503 | 5.2:+26219395 | MS.gene68296:CDS |
| AGTTGTTAAAGGAATGAAAT+GGG | 0.466263 | 5.2:+26219469 | MS.gene68296:CDS |
| TTACCATTTGAGTGAAGCCT+TGG | 0.467858 | 5.2:+26219082 | MS.gene68296:CDS |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5.2:+26219434 | MS.gene68296:CDS |
| CTTTCAGATCCACCACCATC+AGG | 0.493605 | 5.2:+26218261 | MS.gene68296:CDS |
| CATTTGTTGATAATGATTGA+AGG | 0.498362 | 5.2:-26218946 | None:intergenic |
| ACATCAAATTAGGAGTAAAT+GGG | 0.511504 | 5.2:+26219667 | MS.gene68296:CDS |
| AATGTTTGTTCTGAGGGAAA+GGG | 0.516697 | 5.2:-26218374 | None:intergenic |
| AGATATTAAAACAAGTCCCT+TGG | 0.516804 | 5.2:+26218920 | MS.gene68296:intron |
| ATCTGGTAGCTTAGAACGCA+AGG | 0.519737 | 5.2:-26219117 | None:intergenic |
| GCCTTGGATGGAACTCCTTG+TGG | 0.519837 | 5.2:+26219011 | MS.gene68296:CDS |
| TTTGGTTTGTGGAAGGACAT+TGG | 0.522019 | 5.2:+26218339 | MS.gene68296:CDS |
| ATTTGTTGATAATGATTGAA+GGG | 0.523333 | 5.2:-26218945 | None:intergenic |
| GATTGGTTGATGGAGTTTCG+TGG | 0.524222 | 5.2:+26219405 | MS.gene68296:CDS |
| TTTGGATGGATTTCTGGGAA+TGG | 0.524782 | 5.2:+26219503 | MS.gene68296:CDS |
| CAAGGAATCATTTGAAGCCA+AGG | 0.529560 | 5.2:-26219099 | None:intergenic |
| AGTTTGATGGAACAAACAAA+TGG | 0.536388 | 5.2:+26219555 | MS.gene68296:CDS |
| TGGTTAAATGTTTGTTCTGA+GGG | 0.543646 | 5.2:-26218380 | None:intergenic |
| TATTCAGACAGAAGATGCTA+AGG | 0.549658 | 5.2:+26219349 | MS.gene68296:CDS |
| TGTGTGGGATGAAAATAGAT+TGG | 0.554231 | 5.2:+26219388 | MS.gene68296:CDS |
| AGATGCTAAGGTTGAAGGAA+AGG | 0.559587 | 5.2:+26219361 | MS.gene68296:CDS |
| GGGAACAAGAAAGATTTGGA+TGG | 0.559657 | 5.2:+26219489 | MS.gene68296:CDS |
| GGTGGATCTGAAAGAGCACT+AGG | 0.560326 | 5.2:-26218252 | None:intergenic |
| TCCATCCAAGGCAACCGACT+CGG | 0.562760 | 5.2:-26219000 | None:intergenic |
| ATGGTTAAATGTTTGTTCTG+AGG | 0.571762 | 5.2:-26218381 | None:intergenic |
| CAAATGGTAATTTGTAGGAG+TGG | 0.588994 | 5.2:-26219069 | None:intergenic |
| ATAATGATTGAAGGGCTCCA+AGG | 0.592883 | 5.2:-26218937 | None:intergenic |
| AGTGAGAGTAACAAAAGTTG+AGG | 0.593305 | 5.2:+26219532 | MS.gene68296:CDS |
| GTTGACGCTCGAGCAAAGAT+GGG | 0.596375 | 5.2:+26219265 | MS.gene68296:CDS |
| TAATGATTGAAGGGCTCCAA+GGG | 0.597144 | 5.2:-26218936 | None:intergenic |
| TGAAGGAAAGGATGTTGTGT+GGG | 0.600380 | 5.2:+26219373 | MS.gene68296:CDS |
| TAACCTGAATTTGGACCTGA+TGG | 0.602045 | 5.2:-26218276 | None:intergenic |
| GAATTTGGACCTGATGGTGG+TGG | 0.603370 | 5.2:-26218270 | None:intergenic |
| TCTACCTTCAAAATCACTGA+TGG | 0.603895 | 5.2:-26218400 | None:intergenic |
| ACCACAAGGAGTTCCATCCA+AGG | 0.647744 | 5.2:-26219012 | None:intergenic |
| GTGGATCTGAAAGAGCACTA+GGG | 0.671016 | 5.2:-26218251 | None:intergenic |
| CCTGAATTTGGACCTGATGG+TGG | 0.683103 | 5.2:-26218273 | None:intergenic |
| TTGAAGGAAAGGATGTTGTG+TGG | 0.692514 | 5.2:+26219372 | MS.gene68296:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATATTATTAATTTTGTGT+AGG | + | chr5.2:26218543-26218562 | MS.gene68296:intron | 15.0% |
| !!! | AATCGATTAGTTATTATTAG+TGG | + | chr5.2:26218794-26218813 | MS.gene68296:intron | 20.0% |
| !!! | ATGTTTTGTATTAAAGAGAA+TGG | + | chr5.2:26219607-26219626 | MS.gene68296:CDS | 20.0% |
| !!! | ATTTGTTGATAATGATTGAA+GGG | - | chr5.2:26218948-26218967 | None:intergenic | 20.0% |
| !!! | TTTTAATATCTTGACCAAAA+TGG | - | chr5.2:26218911-26218930 | None:intergenic | 20.0% |
| ! | AAATATTTAAGCACACAGAA+AGG | - | chr5.2:26218721-26218740 | None:intergenic | 25.0% |
| ! | AAGTTGTTAAAGGAATGAAA+TGG | + | chr5.2:26219468-26219487 | MS.gene68296:CDS | 25.0% |
| ! | ACATCAAATTAGGAGTAAAT+GGG | + | chr5.2:26219667-26219686 | MS.gene68296:CDS | 25.0% |
| ! | AGTTGTTAAAGGAATGAAAT+GGG | + | chr5.2:26219469-26219488 | MS.gene68296:CDS | 25.0% |
| ! | ATTACAAGATAACCTGAATT+TGG | - | chr5.2:26218288-26218307 | None:intergenic | 25.0% |
| ! | CTTCAATCATTATCAACAAA+TGG | + | chr5.2:26218947-26218966 | MS.gene68296:CDS | 25.0% |
| ! | TATTATGTCATAAGAAGGAA+GGG | + | chr5.2:26218478-26218497 | MS.gene68296:intron | 25.0% |
| ! | TTATTATGTCATAAGAAGGA+AGG | + | chr5.2:26218477-26218496 | MS.gene68296:intron | 25.0% |
| ! | TTCGTTATTATGTCATAAGA+AGG | + | chr5.2:26218473-26218492 | MS.gene68296:intron | 25.0% |
| !! | TTCAGGTTATCTTGTAATAT+TGG | + | chr5.2:26218290-26218309 | MS.gene68296:CDS | 25.0% |
| !!! | AGTTTTAAATAGAACGTTCA+AGG | + | chr5.2:26218599-26218618 | MS.gene68296:intron | 25.0% |
| !!! | CATTTGTTGATAATGATTGA+AGG | - | chr5.2:26218949-26218968 | None:intergenic | 25.0% |
| AAAGAGAATGGATAGAAGAT+TGG | + | chr5.2:26219619-26219638 | MS.gene68296:CDS | 30.0% | |
| AAATGGGAACAAGAAAGATT+TGG | + | chr5.2:26219485-26219504 | MS.gene68296:CDS | 30.0% | |
| AACTCCTTGTGGTTTATTAA+GGG | + | chr5.2:26219022-26219041 | MS.gene68296:CDS | 30.0% | |
| AAGCTTAAATTCAAAGGAAG+AGG | + | chr5.2:26218863-26218882 | MS.gene68296:intron | 30.0% | |
| AGATATTAAAACAAGTCCCT+TGG | + | chr5.2:26218920-26218939 | MS.gene68296:intron | 30.0% | |
| AGCTATAATGTCTGATTCTA+TGG | - | chr5.2:26218634-26218653 | None:intergenic | 30.0% | |
| AGTTTGATGGAACAAACAAA+TGG | + | chr5.2:26219555-26219574 | MS.gene68296:CDS | 30.0% | |
| ATGGTTAAATGTTTGTTCTG+AGG | - | chr5.2:26218384-26218403 | None:intergenic | 30.0% | |
| ATTATGTCATAAGAAGGAAG+GGG | + | chr5.2:26218479-26218498 | MS.gene68296:intron | 30.0% | |
| CACATCAAATTAGGAGTAAA+TGG | + | chr5.2:26219666-26219685 | MS.gene68296:CDS | 30.0% | |
| GACAATAGAAAGTTGAAATC+TGG | - | chr5.2:26219137-26219156 | None:intergenic | 30.0% | |
| GTTTATTAAGGGAAAAAGTG+TGG | + | chr5.2:26219033-26219052 | MS.gene68296:CDS | 30.0% | |
| TGACATAATAACGAAGACAA+TGG | - | chr5.2:26218468-26218487 | None:intergenic | 30.0% | |
| TGGTTAAATGTTTGTTCTGA+GGG | - | chr5.2:26218383-26218402 | None:intergenic | 30.0% | |
| TTGAGTTTGGAAGTTGTTAA+AGG | + | chr5.2:26219458-26219477 | MS.gene68296:CDS | 30.0% | |
| ! | AAAGATTTGGATGGATTTCT+GGG | + | chr5.2:26219498-26219517 | MS.gene68296:CDS | 30.0% |
| ! | GAAATAAGCAAGAAACGTTT+TGG | + | chr5.2:26218969-26218988 | MS.gene68296:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.2:26219395-26219414 | MS.gene68296:CDS | 30.0% |
| ! | TCACTCAAATGGTAATTTGT+AGG | - | chr5.2:26219077-26219096 | None:intergenic | 30.0% |
| ! | TTAACCATCAGTGATTTTGA+AGG | + | chr5.2:26218396-26218415 | MS.gene68296:CDS | 30.0% |
| ! | TTGTCCTTTTATGTTTGTGA+AGG | + | chr5.2:26219196-26219215 | MS.gene68296:CDS | 30.0% |
| ! | TTTTCCCTTAATAAACCACA+AGG | - | chr5.2:26219029-26219048 | None:intergenic | 30.0% |
| !! | ATTAATGTATGCTGCCATTT+TGG | + | chr5.2:26218894-26218913 | MS.gene68296:intron | 30.0% |
| ACAAAAGTTGAGGAGTTTGA+TGG | + | chr5.2:26219542-26219561 | MS.gene68296:CDS | 35.0% | |
| AGAAAATGTCATGTTCCTTC+CGG | + | chr5.2:26218431-26218450 | MS.gene68296:intron | 35.0% | |
| AGTGAGAGTAACAAAAGTTG+AGG | + | chr5.2:26219532-26219551 | MS.gene68296:CDS | 35.0% | |
| CCAAGCAAGCTTAAATTCAA+AGG | + | chr5.2:26218857-26218876 | MS.gene68296:intron | 35.0% | |
| CCTTCCTTCACAAACATAAA+AGG | - | chr5.2:26219203-26219222 | None:intergenic | 35.0% | |
| GAACTCCTTGTGGTTTATTA+AGG | + | chr5.2:26219021-26219040 | MS.gene68296:CDS | 35.0% | |
| GAAGGAAGGAATGACATTAA+AGG | + | chr5.2:26219214-26219233 | MS.gene68296:CDS | 35.0% | |
| TATTCAGACAGAAGATGCTA+AGG | + | chr5.2:26219349-26219368 | MS.gene68296:CDS | 35.0% | |
| TCAGACACTCACATCAAATT+AGG | + | chr5.2:26219657-26219676 | MS.gene68296:CDS | 35.0% | |
| TCTACCTTCAAAATCACTGA+TGG | - | chr5.2:26218403-26218422 | None:intergenic | 35.0% | |
| TGTGTGGGATGAAAATAGAT+TGG | + | chr5.2:26219388-26219407 | MS.gene68296:CDS | 35.0% | |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5.2:26219434-26219453 | MS.gene68296:CDS | 35.0% |
| ! | CAAATGGTAATTTGTAGGAG+TGG | - | chr5.2:26219072-26219091 | None:intergenic | 35.0% |
| ! | CCTTTGAATTTAAGCTTGCT+TGG | - | chr5.2:26218860-26218879 | None:intergenic | 35.0% |
| ! | CCTTTTATGTTTGTGAAGGA+AGG | + | chr5.2:26219200-26219219 | MS.gene68296:CDS | 35.0% |
| ! | GAAAGATTTGGATGGATTTC+TGG | + | chr5.2:26219497-26219516 | MS.gene68296:CDS | 35.0% |
| ! | GACAATGGTTGATTCAATAC+CGG | - | chr5.2:26218453-26218472 | None:intergenic | 35.0% |
| !! | AAATGTTTGTTCTGAGGGAA+AGG | - | chr5.2:26218378-26218397 | None:intergenic | 35.0% |
| !! | AATGTTTGTTCTGAGGGAAA+GGG | - | chr5.2:26218377-26218396 | None:intergenic | 35.0% |
| !! | CTTTCTCTTTCTTTGGTTTG+TGG | + | chr5.2:26218328-26218347 | MS.gene68296:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.2:26219445-26219464 | MS.gene68296:CDS | 35.0% |
| AACCAGTCGTTGTTGGAAAA+TGG | + | chr5.2:26219171-26219190 | MS.gene68296:CDS | 40.0% | |
| ACAGAAGATGCTAAGGTTGA+AGG | + | chr5.2:26219356-26219375 | MS.gene68296:CDS | 40.0% | |
| AGATGCTAAGGTTGAAGGAA+AGG | + | chr5.2:26219361-26219380 | MS.gene68296:CDS | 40.0% | |
| ATAATGATTGAAGGGCTCCA+AGG | - | chr5.2:26218940-26218959 | None:intergenic | 40.0% | |
| GACTCCTTTCCATGTACAAA+AGG | + | chr5.2:26218226-26218245 | MS.gene68296:CDS | 40.0% | |
| GCTCAGACTTTCTCTTTCTT+TGG | + | chr5.2:26218321-26218340 | MS.gene68296:CDS | 40.0% | |
| GGGAACAAGAAAGATTTGGA+TGG | + | chr5.2:26219489-26219508 | MS.gene68296:CDS | 40.0% | |
| TAACCTGAATTTGGACCTGA+TGG | - | chr5.2:26218279-26218298 | None:intergenic | 40.0% | |
| TAATGATTGAAGGGCTCCAA+GGG | - | chr5.2:26218939-26218958 | None:intergenic | 40.0% | |
| TGAAGGAAAGGATGTTGTGT+GGG | + | chr5.2:26219373-26219392 | MS.gene68296:CDS | 40.0% | |
| TGTGGAAGGACATTGGTATT+GGG | + | chr5.2:26218346-26218365 | MS.gene68296:CDS | 40.0% | |
| TTACCATTTGAGTGAAGCCT+TGG | + | chr5.2:26219082-26219101 | MS.gene68296:CDS | 40.0% | |
| TTGAAGGAAAGGATGTTGTG+TGG | + | chr5.2:26219372-26219391 | MS.gene68296:CDS | 40.0% | |
| TTGTGGAAGGACATTGGTAT+TGG | + | chr5.2:26218345-26218364 | MS.gene68296:CDS | 40.0% | |
| ! | ACTAGGGTTCCTTTTGTACA+TGG | - | chr5.2:26218238-26218257 | None:intergenic | 40.0% |
| ! | ATGGTTGATTCAATACCGGA+AGG | - | chr5.2:26218449-26218468 | None:intergenic | 40.0% |
| ! | CAAGGAATCATTTGAAGCCA+AGG | - | chr5.2:26219102-26219121 | None:intergenic | 40.0% |
| ! | GGTTCCTTTTGTACATGGAA+AGG | - | chr5.2:26218233-26218252 | None:intergenic | 40.0% |
| ! | TACCATTTTCCAACAACGAC+TGG | - | chr5.2:26219176-26219195 | None:intergenic | 40.0% |
| ! | TGAATTTAAGCTTGCTTGGC+TGG | - | chr5.2:26218856-26218875 | None:intergenic | 40.0% |
| ! | TTTGGATGGATTTCTGGGAA+TGG | + | chr5.2:26219503-26219522 | MS.gene68296:CDS | 40.0% |
| !! | CTCTTTCTTTGGTTTGTGGA+AGG | + | chr5.2:26218332-26218351 | MS.gene68296:CDS | 40.0% |
| !! | TTTGGTTTGTGGAAGGACAT+TGG | + | chr5.2:26218339-26218358 | MS.gene68296:CDS | 40.0% |
| !!! | TTTTGGTTTTCATGCCGAGT+CGG | + | chr5.2:26218986-26219005 | MS.gene68296:CDS | 40.0% |
| AAGCCAAGGCTTCACTCAAA+TGG | - | chr5.2:26219088-26219107 | None:intergenic | 45.0% | |
| AGAAGGAAGGGGAAGAATCA+AGG | + | chr5.2:26218490-26218509 | MS.gene68296:intron | 45.0% | |
| ATCTGGTAGCTTAGAACGCA+AGG | - | chr5.2:26219120-26219139 | None:intergenic | 45.0% | |
| GAAGGAAGGGGAAGAATCAA+GGG | + | chr5.2:26218491-26218510 | MS.gene68296:intron | 45.0% | |
| ! | GACTGGTTCAGAACGATCAT+TGG | - | chr5.2:26219159-26219178 | None:intergenic | 45.0% |
| ! | TTTTGTGTAGGTAGCTCAGC+TGG | + | chr5.2:26218555-26218574 | MS.gene68296:intron | 45.0% |
| !! | GATTGGTTGATGGAGTTTCG+TGG | + | chr5.2:26219405-26219424 | MS.gene68296:CDS | 45.0% |
| !! | GTGGATCTGAAAGAGCACTA+GGG | - | chr5.2:26218254-26218273 | None:intergenic | 45.0% |
| ACCACAAGGAGTTCCATCCA+AGG | - | chr5.2:26219015-26219034 | None:intergenic | 50.0% | |
| AGTTGACGCTCGAGCAAAGA+TGG | + | chr5.2:26219264-26219283 | MS.gene68296:CDS | 50.0% | |
| CCACCATCAGGTCCAAATTC+AGG | + | chr5.2:26218273-26218292 | MS.gene68296:CDS | 50.0% | |
| CCTGAATTTGGACCTGATGG+TGG | - | chr5.2:26218276-26218295 | None:intergenic | 50.0% | |
| CTTTCAGATCCACCACCATC+AGG | + | chr5.2:26218261-26218280 | MS.gene68296:CDS | 50.0% | |
| GTTGACGCTCGAGCAAAGAT+GGG | + | chr5.2:26219265-26219284 | MS.gene68296:CDS | 50.0% | |
| ! | CGTTCTGAACCAGTCGTTGT+TGG | + | chr5.2:26219164-26219183 | MS.gene68296:CDS | 50.0% |
| !! | GAATTTGGACCTGATGGTGG+TGG | - | chr5.2:26218273-26218292 | None:intergenic | 50.0% |
| !! | GGTGGATCTGAAAGAGCACT+AGG | - | chr5.2:26218255-26218274 | None:intergenic | 50.0% |
| GCCTTGGATGGAACTCCTTG+TGG | + | chr5.2:26219011-26219030 | MS.gene68296:CDS | 55.0% | |
| TCCATCCAAGGCAACCGACT+CGG | - | chr5.2:26219003-26219022 | None:intergenic | 55.0% | |
| TCATGCCGAGTCGGTTGCCT+TGG | + | chr5.2:26218995-26219014 | MS.gene68296:CDS | 60.0% | |
| GCCGAGTCGGTTGCCTTGGA+TGG | + | chr5.2:26218999-26219018 | MS.gene68296:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 26218213 | 26219694 | 26218213 | ID=MS.gene68296 |
| chr5.2 | mRNA | 26218213 | 26219694 | 26218213 | ID=MS.gene68296.t1;Parent=MS.gene68296 |
| chr5.2 | exon | 26218213 | 26218417 | 26218213 | ID=MS.gene68296.t1.exon1;Parent=MS.gene68296.t1 |
| chr5.2 | CDS | 26218213 | 26218417 | 26218213 | ID=cds.MS.gene68296.t1;Parent=MS.gene68296.t1 |
| chr5.2 | exon | 26218922 | 26219694 | 26218922 | ID=MS.gene68296.t1.exon2;Parent=MS.gene68296.t1 |
| chr5.2 | CDS | 26218922 | 26219694 | 26218922 | ID=cds.MS.gene68296.t1;Parent=MS.gene68296.t1 |
| Gene Sequence |
| Protein sequence |
