Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68293.t1 | XP_003613366.2 | 92 | 387 | 31 | 0 | 1 | 387 | 46 | 432 | 1.90E-208 | 734.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68293.t1 | G7K479 | 92.0 | 387 | 31 | 0 | 1 | 387 | 1 | 387 | 1.3e-208 | 734.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene68293 | 0.802146 | 6.44E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene68293 | 0.805137 | 1.54E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene68293 | 0.806018 | 1.01E-49 | -1.69E-46 |
| MS.gene053094 | MS.gene68293 | 0.813001 | 3.19E-51 | -1.69E-46 |
| MS.gene05410 | MS.gene68293 | 0.824392 | 8.27E-54 | -1.69E-46 |
| MS.gene05414 | MS.gene68293 | 0.81857 | 1.83E-52 | -1.69E-46 |
| MS.gene05427 | MS.gene68293 | 0.805713 | 1.17E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene68293 | 0.800948 | 1.13E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68293 | MS.gene68298 | PPI |
| MS.gene68293 | MS.gene027543 | PPI |
| MS.gene68293 | MS.gene045965 | PPI |
| MS.gene68293 | MS.gene43936 | PPI |
| MS.gene68293 | MS.gene45119 | PPI |
| MS.gene68293 | MS.gene027544 | PPI |
| MS.gene68293 | MS.gene68296 | PPI |
| MS.gene68293 | MS.gene43935 | PPI |
| MS.gene027544 | MS.gene68293 | PPI |
| MS.gene68293 | MS.gene45115 | PPI |
| MS.gene68293 | MS.gene053932 | PPI |
| MS.gene68293 | MS.gene68297 | PPI |
| MS.gene68293 | MS.gene68295 | PPI |
| MS.gene68293 | MS.gene78745 | PPI |
| MS.gene68293 | MS.gene027538 | PPI |
| MS.gene68293 | MS.gene027536 | PPI |
| MS.gene68293 | MS.gene45120 | PPI |
| MS.gene68293 | MS.gene45118 | PPI |
| MS.gene68293 | MS.gene027540 | PPI |
| MS.gene68296 | MS.gene68293 | PPI |
| MS.gene68293 | MS.gene042700 | PPI |
| MS.gene68293 | MS.gene45114 | PPI |
| MS.gene68293 | MS.gene027535 | PPI |
| MS.gene68293 | MS.gene45117 | PPI |
| MS.gene68297 | MS.gene68293 | PPI |
| MS.gene68293 | MS.gene027539 | PPI |
| MS.gene68293 | MS.gene45116 | PPI |
| MS.gene68293 | MS.gene027537 | PPI |
| MS.gene68293 | MS.gene027534 | PPI |
| MS.gene68293 | MS.gene68292 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68293.t1 | MTR_5g035750 | 91.990 | 387 | 31 | 0 | 1 | 387 | 1 | 387 | 0.0 | 742 |
| MS.gene68293.t1 | MTR_5g035690 | 88.372 | 387 | 44 | 1 | 1 | 387 | 1 | 386 | 0.0 | 707 |
| MS.gene68293.t1 | MTR_5g035665 | 86.822 | 387 | 43 | 1 | 1 | 387 | 1 | 379 | 0.0 | 696 |
| MS.gene68293.t1 | MTR_5g035670 | 81.748 | 389 | 61 | 2 | 1 | 387 | 1 | 381 | 0.0 | 647 |
| MS.gene68293.t1 | MTR_5g035760 | 74.615 | 390 | 86 | 4 | 1 | 387 | 1 | 380 | 0.0 | 577 |
| MS.gene68293.t1 | MTR_6g472110 | 49.752 | 404 | 181 | 9 | 1 | 387 | 1 | 399 | 1.22e-119 | 352 |
| MS.gene68293.t1 | MTR_6g016660 | 41.422 | 408 | 208 | 8 | 1 | 387 | 1 | 398 | 2.30e-97 | 296 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68293.t1 | AT1G13480 | 43.641 | 401 | 198 | 11 | 1 | 387 | 1 | 387 | 1.16e-103 | 311 |
| MS.gene68293.t1 | AT1G13520 | 44.030 | 402 | 195 | 12 | 1 | 387 | 1 | 387 | 1.29e-101 | 306 |
| MS.gene68293.t1 | AT1G13530 | 44.975 | 398 | 195 | 11 | 1 | 387 | 1 | 385 | 1.09e-99 | 301 |
| MS.gene68293.t1 | AT1G13490 | 43.719 | 398 | 197 | 9 | 1 | 387 | 1 | 382 | 1.18e-99 | 301 |
| MS.gene68293.t1 | AT1G13510 | 43.108 | 399 | 196 | 12 | 1 | 387 | 1 | 380 | 1.20e-99 | 301 |
| MS.gene68293.t1 | AT1G13470 | 43.939 | 396 | 195 | 12 | 1 | 387 | 1 | 378 | 2.28e-94 | 287 |
| MS.gene68293.t1 | AT1G13540 | 43.250 | 400 | 195 | 13 | 1 | 387 | 1 | 381 | 1.23e-92 | 283 |
| MS.gene68293.t1 | AT1G13550 | 41.397 | 401 | 202 | 13 | 1 | 384 | 1 | 385 | 4.70e-91 | 279 |
| MS.gene68293.t1 | AT1G13490 | 41.814 | 397 | 187 | 9 | 1 | 387 | 1 | 363 | 2.27e-89 | 274 |
| MS.gene68293.t1 | AT1G61600 | 38.318 | 428 | 216 | 9 | 1 | 387 | 1 | 421 | 4.62e-88 | 273 |
| MS.gene68293.t1 | AT1G13500 | 41.935 | 403 | 201 | 13 | 1 | 387 | 1 | 386 | 7.48e-87 | 268 |
Find 88 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCAGATGGAATTCCTTC+TGG | 0.172161 | 5.2:+26256384 | MS.gene68293:CDS |
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | 5.2:-26255765 | None:intergenic |
| TCAGAACAATCATTGAAAAT+TGG | 0.211604 | 5.2:-26256522 | None:intergenic |
| AAAATTGGAAAGTTGATATT+TGG | 0.225203 | 5.2:-26256507 | None:intergenic |
| CCTTCCTTCACAAACATAAA+TGG | 0.225580 | 5.2:-26256573 | None:intergenic |
| AGCCTAAAGCTTCGCTTAAA+TGG | 0.247185 | 5.2:-26256458 | None:intergenic |
| GCAAATAAGTGGAAGAAATT+TGG | 0.277030 | 5.2:+26256933 | MS.gene68293:CDS |
| GCTCAAACTTACTGCTGTTT+TGG | 0.281432 | 5.2:+26255801 | MS.gene68293:CDS |
| GAGGAGAATGGATACAAAAT+TGG | 0.283501 | 5.2:+26256986 | MS.gene68293:CDS |
| CTTTCAGACCCACCGCCATC+AGG | 0.293327 | 5.2:+26255741 | MS.gene68293:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5.2:+26256812 | MS.gene68293:CDS |
| TTGAAGGGTTCCAAAGCTTT+TGG | 0.304910 | 5.2:-26256303 | None:intergenic |
| GCTTCTTCAGTGTAGGTGTT+TGG | 0.311170 | 5.2:-26255924 | None:intergenic |
| GAAGGAAGGAATGAATTTAA+AGG | 0.316001 | 5.2:+26256587 | MS.gene68293:CDS |
| GATAATGGTTTATTCAATAC+TGG | 0.323134 | 5.2:-26255957 | None:intergenic |
| GGTATAAACAATATTATAAC+TGG | 0.330323 | 5.2:+26255897 | MS.gene68293:CDS |
| CCTCAGATGGAATTCCTTCT+GGG | 0.337132 | 5.2:+26256385 | MS.gene68293:CDS |
| TATACCAGATGTATAATTGA+TGG | 0.339222 | 5.2:-26255880 | None:intergenic |
| TTCGCTTAAATGGTAGTTGC+GGG | 0.362092 | 5.2:-26256448 | None:intergenic |
| TGATGTTAAACCAAAAGCTT+TGG | 0.376817 | 5.2:+26256293 | MS.gene68293:CDS |
| TAGTAGCGATTCGAAGATAA+TGG | 0.381577 | 5.2:-26255972 | None:intergenic |
| AAATGGGAACAAGAAAGATT+TGG | 0.385031 | 5.2:+26256852 | MS.gene68293:CDS |
| AAAGTTGATATTTGGTAGCT+TGG | 0.386482 | 5.2:-26256499 | None:intergenic |
| CACATCAAGTTAGGAGCAAA+TGG | 0.392541 | 5.2:+26257033 | MS.gene68293:CDS |
| GAAAGATTTGGATGGAATGC+TGG | 0.400495 | 5.2:+26256864 | MS.gene68293:CDS |
| AAGTTATTCTTTGAGGAGAA+TGG | 0.403630 | 5.2:+26256974 | MS.gene68293:CDS |
| CCTTTGAACTTGTACTAGCT+TGG | 0.411881 | 5.2:-26256230 | None:intergenic |
| ACAAAAGTTGAGGAGTTTGA+TGG | 0.425344 | 5.2:+26256909 | MS.gene68293:CDS |
| TGAAGGGAAGGATGCTGCTT+GGG | 0.431448 | 5.2:+26256740 | MS.gene68293:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5.2:+26256637 | MS.gene68293:CDS |
| GTAACCATCAATTATACATC+TGG | 0.444032 | 5.2:+26255876 | MS.gene68293:CDS |
| ACAGAAGTTGCTAAGGTTGA+AGG | 0.447457 | 5.2:+26256723 | MS.gene68293:CDS |
| ATAGACACTCACATCAAGTT+AGG | 0.448378 | 5.2:+26257024 | MS.gene68293:CDS |
| TACCATTTAAGCGAAGCTTT+AGG | 0.450719 | 5.2:+26256456 | MS.gene68293:CDS |
| AGAAGGAAGGGGAAGTATCA+AGG | 0.456356 | 5.2:+26256002 | MS.gene68293:CDS |
| TGGTTGAAAGTTATTCTTTG+AGG | 0.464463 | 5.2:+26256967 | MS.gene68293:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5.2:+26256762 | MS.gene68293:CDS |
| GAATTCCTTCTGGGTTATTG+AGG | 0.465815 | 5.2:+26256394 | MS.gene68293:CDS |
| TACTTGTTGATAATCATTGA+AGG | 0.476536 | 5.2:-26256319 | None:intergenic |
| GAATTTGGCCCTGATGGCGG+TGG | 0.476667 | 5.2:-26255750 | None:intergenic |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5.2:+26256801 | MS.gene68293:CDS |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.489041 | 5.2:+26256672 | MS.gene68293:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.2:+26256573 | MS.gene68293:CDS |
| TAGTACAAGTTCAAAGGAAG+AGG | 0.503151 | 5.2:+26256236 | MS.gene68293:CDS |
| TTTGGATGGAATGCTGGGAA+TGG | 0.504148 | 5.2:+26256870 | MS.gene68293:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.507064 | 5.2:+26255985 | MS.gene68293:CDS |
| GCAAAATCAGTTGCCTCAGA+TGG | 0.507539 | 5.2:+26256372 | MS.gene68293:CDS |
| TCTGGGTTATTGAGGAAAAG+AGG | 0.508032 | 5.2:+26256402 | MS.gene68293:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.509676 | 5.2:-26255756 | None:intergenic |
| AAAGATTTGGATGGAATGCT+GGG | 0.513249 | 5.2:+26256865 | MS.gene68293:CDS |
| CCAAGCTAGTACAAGTTCAA+AGG | 0.520879 | 5.2:+26256230 | MS.gene68293:CDS |
| TGCTTGGGATGAAAATAGAT+TGG | 0.520934 | 5.2:+26256755 | MS.gene68293:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.522008 | 5.2:+26255989 | MS.gene68293:CDS |
| TGTTCTGAATCAGTGGTTGT+TGG | 0.524665 | 5.2:+26256537 | MS.gene68293:CDS |
| TACTATGTTATAAGAAGGAA+GGG | 0.531189 | 5.2:+26255990 | MS.gene68293:CDS |
| TTGAAGGGAAGGATGCTGCT+TGG | 0.532548 | 5.2:+26256739 | MS.gene68293:CDS |
| AAGTTGTTGAGGCAATGAAA+TGG | 0.534687 | 5.2:+26256835 | MS.gene68293:CDS |
| ATTTGGTAGCTTGGAACGCA+AGG | 0.538684 | 5.2:-26256490 | None:intergenic |
| TATTCAAACAGAAGTTGCTA+AGG | 0.547553 | 5.2:+26256716 | MS.gene68293:CDS |
| CAGAAGTTGCTAAGGTTGAA+GGG | 0.548831 | 5.2:+26256724 | MS.gene68293:CDS |
| CAATGATTGTTCTGAATCAG+TGG | 0.548989 | 5.2:+26256530 | MS.gene68293:CDS |
| AGTTTGATGGAGCAAATAAG+TGG | 0.549427 | 5.2:+26256922 | MS.gene68293:CDS |
| ACTTGTTGATAATCATTGAA+GGG | 0.552020 | 5.2:-26256318 | None:intergenic |
| TTTCAGACCCACCGCCATCA+GGG | 0.554396 | 5.2:+26255742 | MS.gene68293:CDS |
| GAAGGAAGGGGAAGTATCAA+GGG | 0.558683 | 5.2:+26256003 | MS.gene68293:CDS |
| ACATCAAGTTAGGAGCAAAT+GGG | 0.561699 | 5.2:+26257034 | MS.gene68293:CDS |
| AATTTGGCCCTGATGGCGGT+GGG | 0.564723 | 5.2:-26255749 | None:intergenic |
| CTGGGTTATTGAGGAAAAGA+GGG | 0.567801 | 5.2:+26256403 | MS.gene68293:CDS |
| AGTTGTTGAGGCAATGAAAT+GGG | 0.574296 | 5.2:+26256836 | MS.gene68293:CDS |
| CTTCGCTTAAATGGTAGTTG+CGG | 0.574527 | 5.2:-26256449 | None:intergenic |
| GGGAACAAGAAAGATTTGGA+TGG | 0.577539 | 5.2:+26256856 | MS.gene68293:CDS |
| GAAATTTGGTAGTTATGTGT+TGG | 0.582462 | 5.2:+26256947 | MS.gene68293:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.2:+26256569 | MS.gene68293:CDS |
| AGTTGCTAAGGTTGAAGGGA+AGG | 0.586429 | 5.2:+26256728 | MS.gene68293:CDS |
| AGTGAGAGTAACAAAAGTTG+AGG | 0.593305 | 5.2:+26256899 | MS.gene68293:CDS |
| AAGGAAAATAGTGGAGAAGG+TGG | 0.602522 | 5.2:+26256675 | MS.gene68293:CDS |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5.2:+26256638 | MS.gene68293:CDS |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.614856 | 5.2:+26256824 | MS.gene68293:CDS |
| GAACATAGCTTCTTCAGTGT+AGG | 0.619148 | 5.2:-26255931 | None:intergenic |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.623216 | 5.2:+26256544 | MS.gene68293:CDS |
| GGTGGGTCTGAAAGAGCACT+AGG | 0.628671 | 5.2:-26255732 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+CGG | 0.637791 | 5.2:-26255753 | None:intergenic |
| CCCAGAAGGAATTCCATCTG+AGG | 0.646225 | 5.2:-26256385 | None:intergenic |
| TCGCTTAAATGGTAGTTGCG+GGG | 0.646915 | 5.2:-26256447 | None:intergenic |
| AAAACTACAACATAAACATG+TGG | 0.651413 | 5.2:-26256265 | None:intergenic |
| GGTTATTGAGGAAAAGAGGG+TGG | 0.667530 | 5.2:+26256406 | MS.gene68293:CDS |
| ACTATGTTATAAGAAGGAAG+GGG | 0.684429 | 5.2:+26255991 | MS.gene68293:CDS |
| TTATCTTGTGATATTAGACG+AGG | 0.694247 | 5.2:+26255776 | MS.gene68293:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATAATTATATTTTTGT+TGG | + | chr5.2:26256112-26256131 | MS.gene68293:intron | 10.0% |
| !! | ACAAGTAGAAATAATAAAAA+TGG | + | chr5.2:26256335-26256354 | MS.gene68293:CDS | 15.0% |
| !! | CAAGTAGAAATAATAAAAAT+GGG | + | chr5.2:26256336-26256355 | MS.gene68293:CDS | 15.0% |
| !! | ATAGATTCATAAAGTAATAG+TGG | + | chr5.2:26256168-26256187 | MS.gene68293:intron | 20.0% |
| !! | ATATTACAATACTCACAATT+GGG | - | chr5.2:26256091-26256110 | None:intergenic | 20.0% |
| !! | GGTATAAACAATATTATAAC+TGG | + | chr5.2:26255897-26255916 | MS.gene68293:CDS | 20.0% |
| !!! | AAAATTGGAAAGTTGATATT+TGG | - | chr5.2:26256510-26256529 | None:intergenic | 20.0% |
| !!! | ATTTTTTCAAAGGAAAATAG+TGG | + | chr5.2:26256666-26256685 | MS.gene68293:CDS | 20.0% |
| ! | AAAACTACAACATAAACATG+TGG | - | chr5.2:26256268-26256287 | None:intergenic | 25.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5.2:26255768-26255787 | None:intergenic | 25.0% |
| ! | CATATTACAATACTCACAAT+TGG | - | chr5.2:26256092-26256111 | None:intergenic | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5.2:26255990-26256009 | MS.gene68293:CDS | 25.0% |
| ! | TATACCAGATGTATAATTGA+TGG | - | chr5.2:26255883-26255902 | None:intergenic | 25.0% |
| ! | TCAGAACAATCATTGAAAAT+TGG | - | chr5.2:26256525-26256544 | None:intergenic | 25.0% |
| !! | GATAATGGTTTATTCAATAC+TGG | - | chr5.2:26255960-26255979 | None:intergenic | 25.0% |
| !!! | ACTTGTTGATAATCATTGAA+GGG | - | chr5.2:26256321-26256340 | None:intergenic | 25.0% |
| !!! | TACTTGTTGATAATCATTGA+AGG | - | chr5.2:26256322-26256341 | None:intergenic | 25.0% |
| !!! | TTGTTGGTAATTATCTTTCA+TGG | + | chr5.2:26256128-26256147 | MS.gene68293:intron | 25.0% |
| AAATGGGAACAAGAAAGATT+TGG | + | chr5.2:26256852-26256871 | MS.gene68293:CDS | 30.0% | |
| ACTATGTTATAAGAAGGAAG+GGG | + | chr5.2:26255991-26256010 | MS.gene68293:CDS | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5.2:26255985-26256004 | MS.gene68293:CDS | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5.2:26255989-26256008 | MS.gene68293:CDS | 30.0% | |
| GAAGGAAGGAATGAATTTAA+AGG | + | chr5.2:26256587-26256606 | MS.gene68293:CDS | 30.0% | |
| GCAAATAAGTGGAAGAAATT+TGG | + | chr5.2:26256933-26256952 | MS.gene68293:CDS | 30.0% | |
| GTAACCATCAATTATACATC+TGG | + | chr5.2:26255876-26255895 | MS.gene68293:CDS | 30.0% | |
| TATTCAAACAGAAGTTGCTA+AGG | + | chr5.2:26256716-26256735 | MS.gene68293:CDS | 30.0% | |
| TGATGTTAAACCAAAAGCTT+TGG | + | chr5.2:26256293-26256312 | MS.gene68293:CDS | 30.0% | |
| TGGTTGAAAGTTATTCTTTG+AGG | + | chr5.2:26256967-26256986 | MS.gene68293:CDS | 30.0% | |
| TTATCTTGTGATATTAGACG+AGG | + | chr5.2:26255776-26255795 | MS.gene68293:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.2:26256569-26256588 | MS.gene68293:CDS | 30.0% | |
| ! | AAGTTATTCTTTGAGGAGAA+TGG | + | chr5.2:26256974-26256993 | MS.gene68293:CDS | 30.0% |
| ! | ACTAGGATTCATTTTGTACA+TGG | - | chr5.2:26255718-26255737 | None:intergenic | 30.0% |
| ! | ATGGTTACATTTTTGTTCTG+AGG | - | chr5.2:26255864-26255883 | None:intergenic | 30.0% |
| ! | GAAATTTGGTAGTTATGTGT+TGG | + | chr5.2:26256947-26256966 | MS.gene68293:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.2:26256762-26256781 | MS.gene68293:CDS | 30.0% |
| ! | TGGTTACATTTTTGTTCTGA+GGG | - | chr5.2:26255863-26255882 | None:intergenic | 30.0% |
| !! | AAAGTTGATATTTGGTAGCT+TGG | - | chr5.2:26256502-26256521 | None:intergenic | 30.0% |
| !!! | AAGCTTTTGGTTTAACATCA+TGG | - | chr5.2:26256293-26256312 | None:intergenic | 30.0% |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5.2:26256656-26256675 | MS.gene68293:CDS | 30.0% |
| AAAGATTTGGATGGAATGCT+GGG | + | chr5.2:26256865-26256884 | MS.gene68293:CDS | 35.0% | |
| AAGTTGTTGAGGCAATGAAA+TGG | + | chr5.2:26256835-26256854 | MS.gene68293:CDS | 35.0% | |
| ACAAAAGTTGAGGAGTTTGA+TGG | + | chr5.2:26256909-26256928 | MS.gene68293:CDS | 35.0% | |
| ACATCAAGTTAGGAGCAAAT+GGG | + | chr5.2:26257034-26257053 | MS.gene68293:CDS | 35.0% | |
| AGTGAGAGTAACAAAAGTTG+AGG | + | chr5.2:26256899-26256918 | MS.gene68293:CDS | 35.0% | |
| AGTTGTTGAGGCAATGAAAT+GGG | + | chr5.2:26256836-26256855 | MS.gene68293:CDS | 35.0% | |
| AGTTTGATGGAGCAAATAAG+TGG | + | chr5.2:26256922-26256941 | MS.gene68293:CDS | 35.0% | |
| ATAGACACTCACATCAAGTT+AGG | + | chr5.2:26257024-26257043 | MS.gene68293:CDS | 35.0% | |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5.2:26256824-26256843 | MS.gene68293:CDS | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.2:26256573-26256592 | MS.gene68293:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.2:26256576-26256595 | None:intergenic | 35.0% | |
| GAGGAGAATGGATACAAAAT+TGG | + | chr5.2:26256986-26257005 | MS.gene68293:CDS | 35.0% | |
| TACCATTTAAGCGAAGCTTT+AGG | + | chr5.2:26256456-26256475 | MS.gene68293:CDS | 35.0% | |
| TAGTACAAGTTCAAAGGAAG+AGG | + | chr5.2:26256236-26256255 | MS.gene68293:CDS | 35.0% | |
| TAGTAGCGATTCGAAGATAA+TGG | - | chr5.2:26255975-26255994 | None:intergenic | 35.0% | |
| TGCTTGGGATGAAAATAGAT+TGG | + | chr5.2:26256755-26256774 | MS.gene68293:CDS | 35.0% | |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5.2:26256801-26256820 | MS.gene68293:CDS | 35.0% |
| ! | CAATGATTGTTCTGAATCAG+TGG | + | chr5.2:26256530-26256549 | MS.gene68293:CDS | 35.0% |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5.2:26256672-26256691 | MS.gene68293:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.2:26256812-26256831 | MS.gene68293:CDS | 35.0% |
| !!! | ACATTTTTGTTCTGAGGGAT+AGG | - | chr5.2:26255858-26255877 | None:intergenic | 35.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.2:26256544-26256563 | MS.gene68293:CDS | 40.0% | |
| ACAGAAGTTGCTAAGGTTGA+AGG | + | chr5.2:26256723-26256742 | MS.gene68293:CDS | 40.0% | |
| AGCCTAAAGCTTCGCTTAAA+TGG | - | chr5.2:26256461-26256480 | None:intergenic | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5.2:26256637-26256656 | MS.gene68293:CDS | 40.0% | |
| ATACTCACAATTGGGATGAC+AGG | - | chr5.2:26256083-26256102 | None:intergenic | 40.0% | |
| CACATCAAGTTAGGAGCAAA+TGG | + | chr5.2:26257033-26257052 | MS.gene68293:CDS | 40.0% | |
| CAGAAGTTGCTAAGGTTGAA+GGG | + | chr5.2:26256724-26256743 | MS.gene68293:CDS | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | + | chr5.2:26256230-26256249 | MS.gene68293:CDS | 40.0% | |
| CCTTTGAACTTGTACTAGCT+TGG | - | chr5.2:26256233-26256252 | None:intergenic | 40.0% | |
| CTGGGTTATTGAGGAAAAGA+GGG | + | chr5.2:26256403-26256422 | MS.gene68293:CDS | 40.0% | |
| CTTCGCTTAAATGGTAGTTG+CGG | - | chr5.2:26256452-26256471 | None:intergenic | 40.0% | |
| GAAAGATTTGGATGGAATGC+TGG | + | chr5.2:26256864-26256883 | MS.gene68293:CDS | 40.0% | |
| GAACATAGCTTCTTCAGTGT+AGG | - | chr5.2:26255934-26255953 | None:intergenic | 40.0% | |
| GAATTCCTTCTGGGTTATTG+AGG | + | chr5.2:26256394-26256413 | MS.gene68293:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5.2:26256638-26256657 | MS.gene68293:CDS | 40.0% | |
| GGGAACAAGAAAGATTTGGA+TGG | + | chr5.2:26256856-26256875 | MS.gene68293:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5.2:26255759-26255778 | None:intergenic | 40.0% | |
| TACTCACAATTGGGATGACA+GGG | - | chr5.2:26256082-26256101 | None:intergenic | 40.0% | |
| TCTGGGTTATTGAGGAAAAG+AGG | + | chr5.2:26256402-26256421 | MS.gene68293:CDS | 40.0% | |
| TTCGCTTAAATGGTAGTTGC+GGG | - | chr5.2:26256451-26256470 | None:intergenic | 40.0% | |
| ! | AAGGAAAATAGTGGAGAAGG+TGG | + | chr5.2:26256675-26256694 | MS.gene68293:CDS | 40.0% |
| ! | CTTTTCCTCAATAACCCAGA+AGG | - | chr5.2:26256402-26256421 | None:intergenic | 40.0% |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | + | chr5.2:26256537-26256556 | MS.gene68293:CDS | 40.0% |
| ! | TTGAAGGGTTCCAAAGCTTT+TGG | - | chr5.2:26256306-26256325 | None:intergenic | 40.0% |
| !! | GCTCAAACTTACTGCTGTTT+TGG | + | chr5.2:26255801-26255820 | MS.gene68293:CDS | 40.0% |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5.2:26256772-26256791 | MS.gene68293:CDS | 40.0% |
| AGTTGCTAAGGTTGAAGGGA+AGG | + | chr5.2:26256728-26256747 | MS.gene68293:CDS | 45.0% | |
| CCTCAGATGGAATTCCTTCT+GGG | + | chr5.2:26256385-26256404 | MS.gene68293:CDS | 45.0% | |
| GCAAAATCAGTTGCCTCAGA+TGG | + | chr5.2:26256372-26256391 | MS.gene68293:CDS | 45.0% | |
| GCTTCTTCAGTGTAGGTGTT+TGG | - | chr5.2:26255927-26255946 | None:intergenic | 45.0% | |
| GGTTATTGAGGAAAAGAGGG+TGG | + | chr5.2:26256406-26256425 | MS.gene68293:CDS | 45.0% | |
| TCGCTTAAATGGTAGTTGCG+GGG | - | chr5.2:26256450-26256469 | None:intergenic | 45.0% | |
| TTTGGATGGAATGCTGGGAA+TGG | + | chr5.2:26256870-26256889 | MS.gene68293:CDS | 45.0% | |
| ! | ATTTGGTAGCTTGGAACGCA+AGG | - | chr5.2:26256493-26256512 | None:intergenic | 45.0% |
| !! | AGAAGGAAGGGGAAGTATCA+AGG | + | chr5.2:26256002-26256021 | MS.gene68293:CDS | 45.0% |
| !! | GAAGGAAGGGGAAGTATCAA+GGG | + | chr5.2:26256003-26256022 | MS.gene68293:CDS | 45.0% |
| !!! | CTGCTGTTTTGGTTTGTGCA+AGG | + | chr5.2:26255812-26255831 | MS.gene68293:CDS | 45.0% |
| CCCAGAAGGAATTCCATCTG+AGG | - | chr5.2:26256388-26256407 | None:intergenic | 50.0% | |
| CTTGAATTTGGCCCTGATGG+CGG | - | chr5.2:26255756-26255775 | None:intergenic | 50.0% | |
| GCCTCAGATGGAATTCCTTC+TGG | + | chr5.2:26256384-26256403 | MS.gene68293:CDS | 50.0% | |
| TTGAAGGGAAGGATGCTGCT+TGG | + | chr5.2:26256739-26256758 | MS.gene68293:CDS | 50.0% | |
| ! | TGAAGGGAAGGATGCTGCTT+GGG | + | chr5.2:26256740-26256759 | MS.gene68293:CDS | 50.0% |
| TTTCAGACCCACCGCCATCA+GGG | + | chr5.2:26255742-26255761 | MS.gene68293:CDS | 55.0% | |
| !! | AATTTGGCCCTGATGGCGGT+GGG | - | chr5.2:26255752-26255771 | None:intergenic | 55.0% |
| !! | GGTGGGTCTGAAAGAGCACT+AGG | - | chr5.2:26255735-26255754 | None:intergenic | 55.0% |
| CTTTCAGACCCACCGCCATC+AGG | + | chr5.2:26255741-26255760 | MS.gene68293:CDS | 60.0% | |
| !! | GAATTTGGCCCTGATGGCGG+TGG | - | chr5.2:26255753-26255772 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 26255693 | 26257061 | 26255693 | ID=MS.gene68293 |
| chr5.2 | mRNA | 26255693 | 26257061 | 26255693 | ID=MS.gene68293.t1;Parent=MS.gene68293 |
| chr5.2 | exon | 26255693 | 26256024 | 26255693 | ID=MS.gene68293.t1.exon1;Parent=MS.gene68293.t1 |
| chr5.2 | CDS | 26255693 | 26256024 | 26255693 | ID=cds.MS.gene68293.t1;Parent=MS.gene68293.t1 |
| chr5.2 | exon | 26256230 | 26257061 | 26256230 | ID=MS.gene68293.t1.exon2;Parent=MS.gene68293.t1 |
| chr5.2 | CDS | 26256230 | 26257061 | 26256230 | ID=cds.MS.gene68293.t1;Parent=MS.gene68293.t1 |
| Gene Sequence |
| Protein sequence |
