AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047915

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047915.t1 MTR_2g022200 100.000 205 0 0 1 205 1 205 1.01e-149 414
MS.gene047915.t1 MTR_4g073560 97.468 79 2 0 117 195 118 196 1.31e-47 155
MS.gene047915.t1 MTR_8g077540 41.566 166 89 2 18 182 17 175 1.20e-38 131
MS.gene047915.t1 MTR_8g077540 41.566 166 89 2 18 182 43 201 3.54e-38 131
MS.gene047915.t1 MTR_5g034130 34.831 178 105 2 5 180 5 173 4.78e-37 127
MS.gene047915.t1 MTR_5g034125 34.831 178 105 2 5 180 5 173 4.78e-37 127
MS.gene047915.t1 MTR_7g109960 34.831 178 105 2 5 180 5 173 5.09e-37 127
MS.gene047915.t1 MTR_6g005820 34.831 178 105 2 5 180 5 173 5.32e-37 127
MS.gene047915.t1 MTR_1g086480 34.831 178 105 2 5 180 5 173 5.38e-37 127
MS.gene047915.t1 MTR_5g016540 34.682 173 102 2 10 180 10 173 2.89e-36 125
MS.gene047915.t1 MTR_4g128910 35.135 185 107 2 4 185 4 178 5.74e-35 122
MS.gene047915.t1 MTR_1g076550 34.973 183 106 2 1 180 1 173 3.16e-32 115
MS.gene047915.t1 MTR_5g015370 32.787 183 110 2 7 182 2 178 1.57e-30 110
MS.gene047915.t1 MTR_5g007810 31.250 192 121 2 1 190 1 183 2.80e-29 107
MS.gene047915.t1 MTR_4g026950 32.727 165 105 1 18 182 1 159 3.32e-29 107
MS.gene047915.t1 MTR_4g077640 31.579 190 119 2 1 188 1 181 3.40e-29 107
MS.gene047915.t1 MTR_5g078090 32.240 183 111 2 7 182 2 178 2.74e-28 105
MS.gene047915.t1 MTR_5g007820 30.102 196 122 3 1 191 1 186 4.44e-27 102
MS.gene047915.t1 MTR_7g112090 37.584 149 81 3 7 155 15 151 2.01e-23 92.8
MS.gene047915.t1 MTR_2g034640 37.267 161 83 4 1 155 3 151 4.22e-23 92.0
MS.gene047915.t1 MTR_4g121860 37.267 161 83 4 1 155 3 151 4.87e-22 89.4
MS.gene047915.t1 MTR_8g077540 37.500 104 58 1 18 121 17 113 7.64e-19 79.3
MS.gene047915.t1 MTR_5g007840 22.467 227 118 4 1 191 1 205 5.02e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047915.t1 AT5G52210 79.798 198 40 0 1 198 1 198 1.13e-115 328
MS.gene047915.t1 AT5G52210 79.798 198 40 0 1 198 1 198 1.13e-115 328
MS.gene047915.t1 AT5G14670 34.831 178 105 2 5 180 5 173 5.00e-37 127
MS.gene047915.t1 AT5G14670 34.831 178 105 2 5 180 5 173 5.00e-37 127
MS.gene047915.t1 AT5G14670 34.831 178 105 2 5 180 5 173 6.29e-37 127
MS.gene047915.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene047915.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene047915.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene047915.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene047915.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene047915.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene047915.t1 AT1G23490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene047915.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene047915.t1 AT1G10630 34.831 178 105 2 5 180 5 173 7.46e-37 127
MS.gene047915.t1 AT1G10630 34.831 178 105 2 5 180 5 173 7.46e-37 127
MS.gene047915.t1 AT2G47170 34.831 178 105 2 5 180 5 173 1.05e-36 126
MS.gene047915.t1 AT2G47170 34.831 178 105 2 5 180 5 173 1.05e-36 126
MS.gene047915.t1 AT2G47170 34.831 178 105 2 5 180 5 173 1.05e-36 126
MS.gene047915.t1 AT3G62290 34.831 178 105 2 5 180 5 173 1.31e-36 126
MS.gene047915.t1 AT3G62290 34.831 178 105 2 5 180 5 173 1.31e-36 126
MS.gene047915.t1 AT3G62290 34.831 178 105 2 5 180 5 173 1.31e-36 126
MS.gene047915.t1 AT2G18390 39.759 166 92 2 18 182 17 175 3.15e-36 125
MS.gene047915.t1 AT2G15310 33.500 200 118 3 1 194 1 191 5.95e-35 123
MS.gene047915.t1 AT2G24765 34.783 184 109 2 4 185 4 178 1.31e-34 121
MS.gene047915.t1 AT3G22950 34.831 178 103 2 8 182 8 175 4.24e-32 115
MS.gene047915.t1 AT3G22950 34.831 178 103 2 8 182 8 175 4.24e-32 115
MS.gene047915.t1 AT5G67560 33.333 189 113 2 7 188 2 184 3.05e-31 112
MS.gene047915.t1 AT3G49870 33.708 178 112 1 5 182 7 178 3.66e-31 112
MS.gene047915.t1 AT3G49870 34.783 161 99 1 22 182 5 159 2.21e-29 107
MS.gene047915.t1 AT3G03120 30.918 207 125 3 1 205 1 191 2.34e-29 108
MS.gene047915.t1 AT5G37680 33.333 183 109 2 7 182 2 178 5.87e-29 107
MS.gene047915.t1 AT5G17060 31.053 190 120 2 1 188 1 181 1.18e-28 106
MS.gene047915.t1 AT5G17060 31.053 190 120 2 1 188 1 181 1.18e-28 106
MS.gene047915.t1 AT2G24765 37.778 135 71 2 4 135 4 128 4.42e-26 98.2
MS.gene047915.t1 AT1G02440 29.032 186 113 5 12 186 12 189 2.07e-25 97.8
MS.gene047915.t1 AT5G37680 35.878 131 84 0 52 182 1 131 2.45e-24 93.6
MS.gene047915.t1 AT3G49860 30.120 166 110 1 17 182 11 170 5.22e-24 94.0
MS.gene047915.t1 AT1G02430 27.957 186 115 5 12 186 12 189 3.83e-23 92.0
MS.gene047915.t1 AT4G02080 38.255 149 80 3 7 155 15 151 6.76e-23 91.7
MS.gene047915.t1 AT3G62560 39.041 146 77 3 7 152 15 148 8.99e-23 91.3
MS.gene047915.t1 AT1G56330 37.267 161 83 4 1 155 3 151 1.45e-22 90.5
MS.gene047915.t1 AT3G03120 33.094 139 82 2 1 137 1 130 3.60e-22 88.2
MS.gene047915.t1 AT1G09180 37.179 156 90 3 1 155 3 151 1.19e-21 88.2
MS.gene047915.t1 AT1G02430 27.564 156 98 4 12 160 12 159 1.93e-18 79.0

Find 49 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTGGTCTTCGCTCAATC+TGG 0.301799 2.4:+65097026 MS.gene047915:intron
TCTTCAGATGATACTGCTTC+AGG 0.332255 2.4:-65097483 None:intergenic
CAAATAGAAAACTTGTGTTC+TGG 0.340227 2.4:+65096342 MS.gene047915:CDS
AATGTTGCAGGCTGGGGATC+AGG 0.347707 2.4:+65097992 MS.gene047915:intron
CCAACTGTGGGATTGAATAT+TGG 0.365635 2.4:+65096305 MS.gene047915:CDS
AAATAGAAAACTTGTGTTCT+GGG 0.404046 2.4:+65096343 MS.gene047915:CDS
AAAACTTGTGTTCTGGGACC+TGG 0.431630 2.4:+65096349 MS.gene047915:CDS
GACTGAAATGTTGAGATTGC+GGG 0.443386 2.4:+65098059 MS.gene047915:CDS
GTTCTGGGACCTGGGCGGCC+AGG 0.460687 2.4:+65096358 MS.gene047915:CDS
AAACTTGTGTTCTGGGACCT+GGG 0.461013 2.4:+65096350 MS.gene047915:CDS
CGGGCAGGTGCAATGGGTCC+AGG 0.467778 2.4:+65098078 MS.gene047915:CDS
GTATCTAGATTTAAAGAAGC+TGG 0.477589 2.4:+65097515 MS.gene047915:CDS
GAGATTGCGGGCAGGTGCAA+TGG 0.494160 2.4:+65098071 MS.gene047915:CDS
AGATTGCGGGCAGGTGCAAT+GGG 0.499243 2.4:+65098072 MS.gene047915:CDS
GAAGCCGTGTCCGCATATGA+TGG 0.503479 2.4:+65097558 MS.gene047915:CDS
ACAGTTGGAACAATTCGATC+AGG 0.520181 2.4:-65096290 None:intergenic
CAGGACCTCTAGGCAGGACC+TGG 0.520559 2.4:-65098096 None:intergenic
GCTTGGTCTTCGCTCAATCT+GGG 0.527000 2.4:+65097027 MS.gene047915:intron
ATGTTGCAGGCTGGGGATCA+GGG 0.529063 2.4:+65097993 MS.gene047915:intron
CCAATATTCAATCCCACAGT+TGG 0.529873 2.4:-65096305 None:intergenic
TGATGTCAGGACCTCTAGGC+AGG 0.532450 2.4:-65098102 None:intergenic
GATTGACAAGGCTGGCAAAA+CGG 0.536788 2.4:+65096117 MS.gene047915:CDS
TTGTTTGCTAATATCAAAAG+AGG 0.540730 2.4:-65097318 None:intergenic
GAAGATGCAAAGTCTGCACT+TGG 0.546377 2.4:+65097115 MS.gene047915:CDS
TTTATGATACCTGGCCGCCC+AGG 0.548036 2.4:-65096367 None:intergenic
GAATATTGGTCGAATTGAAG+TGG 0.551287 2.4:+65096319 MS.gene047915:CDS
TGTTTGCTAATATCAAAAGA+GGG 0.557064 2.4:-65097317 None:intergenic
GATCGAATTGTTCCAACTGT+GGG 0.562879 2.4:+65096293 MS.gene047915:CDS
AAGCCGTGTCCGCATATGAT+GGG 0.572837 2.4:+65097559 MS.gene047915:CDS
TTACCCATCATATGCGGACA+CGG 0.580292 2.4:-65097562 None:intergenic
GGACTGAAATGTTGAGATTG+CGG 0.582621 2.4:+65098058 MS.gene047915:CDS
TGATCGAATTGTTCCAACTG+TGG 0.589660 2.4:+65096292 MS.gene047915:CDS
AGAAAAGGTGCTTCGACATG+AGG 0.590643 2.4:+65097281 MS.gene047915:intron
TGGGTCCAGGTCCTGCCTAG+AGG 0.592022 2.4:+65098091 MS.gene047915:CDS
GGAAAGTGCAGAATGGCTTG+TGG 0.602944 2.4:+65098014 MS.gene047915:CDS
TCGGTGTACACAAACGTAGA+AGG 0.604189 2.4:+65096260 MS.gene047915:CDS
TATCATCTGAAGAACTAGCT+CGG 0.614679 2.4:+65097493 MS.gene047915:CDS
CTGGGAGAAATATTATGAAG+AGG 0.615056 2.4:+65097045 MS.gene047915:CDS
GGATCAGGGAAAGTGCAGAA+TGG 0.620734 2.4:+65098007 MS.gene047915:CDS
TTTGCTTGAGAAGATAAAGT+CGG 0.631382 2.4:+65096241 MS.gene047915:CDS
AAGTGATGGAGAGAAGCAAG+AGG 0.637928 2.4:+65098037 MS.gene047915:CDS
CTTCGACATGAGGATCTCAA+AGG 0.639558 2.4:+65097291 MS.gene047915:CDS
GAAATGTTGAGATTGCGGGC+AGG 0.639681 2.4:+65098063 MS.gene047915:CDS
GTTGGAACAATTCGATCAGG+AGG 0.646916 2.4:-65096287 None:intergenic
AGAATGGCTTGTGGAAGTGA+TGG 0.647620 2.4:+65098023 MS.gene047915:CDS
TTTGCATCTTCAAATCGTGA+CGG 0.660305 2.4:-65097103 None:intergenic
GTTTGCTAATATCAAAAGAG+GGG 0.667030 2.4:-65097316 None:intergenic
TCTCACTTACCCATCATATG+CGG 0.684179 2.4:-65097568 None:intergenic
CTTGTGTTCTGGGACCTGGG+CGG 0.788115 2.4:+65096353 MS.gene047915:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCTATAATTATGATATT+TGG + chr2.4:65096415-65096434 MS.gene047915:intron 10.0%
!! ACTAAATTTATACTAATTTA+AGG + chr2.4:65097170-65097189 MS.gene047915:intron 10.0%
!! TTTATCTTATAATATGAAAA+GGG - chr2.4:65096980-65096999 None:intergenic 10.0%
!!! GTTTGTTTATTTTAAATTAT+AGG + chr2.4:65096694-65096713 MS.gene047915:intron 10.0%
!!! TTTTATCTTATAATATGAAA+AGG - chr2.4:65096981-65097000 None:intergenic 10.0%
!! AGTAGTTTCTTAAAAAATAA+GGG - chr2.4:65096159-65096178 None:intergenic 15.0%
!! ATTATTAATTAATGAGTGAT+AGG + chr2.4:65097774-65097793 MS.gene047915:intron 15.0%
!! TAAGAAAAAAATAACCATTA+AGG + chr2.4:65097670-65097689 MS.gene047915:intron 15.0%
!! AAACATAAAAAATAAGACCT+CGG - chr2.4:65096566-65096585 None:intergenic 20.0%
!! ATATAAAGTAACAGTTCTTA+TGG - chr2.4:65096740-65096759 None:intergenic 20.0%
!! CAGTAGTTTCTTAAAAAATA+AGG - chr2.4:65096160-65096179 None:intergenic 20.0%
!! GAAATGTAATACAAAGAATT+AGG - chr2.4:65097947-65097966 None:intergenic 20.0%
!! TATTGAAAATGAAATGGTAA+TGG - chr2.4:65097631-65097650 None:intergenic 20.0%
!!! TTACCATTTCATTTTCAATA+AGG + chr2.4:65097631-65097650 MS.gene047915:intron 20.0%
! AAATAGAAAACTTGTGTTCT+GGG + chr2.4:65096343-65096362 MS.gene047915:CDS 25.0%
! AACATAAAAAATAAGACCTC+GGG - chr2.4:65096565-65096584 None:intergenic 25.0%
! ATCATTTCATTCTACTTCAA+TGG + chr2.4:65096508-65096527 MS.gene047915:intron 25.0%
! GATCCTTATTGAAAATGAAA+TGG - chr2.4:65097637-65097656 None:intergenic 25.0%
! GTTGCCTATAAATAATAAGT+GGG + chr2.4:65097810-65097829 MS.gene047915:intron 25.0%
! TACTTCATTATGTACCTTAA+TGG - chr2.4:65097687-65097706 None:intergenic 25.0%
! TATGTTGAAATTAAACAGCA+CGG + chr2.4:65097230-65097249 MS.gene047915:intron 25.0%
! TGTTGCCTATAAATAATAAG+TGG + chr2.4:65097809-65097828 MS.gene047915:intron 25.0%
! TTGCCTATAAATAATAAGTG+GGG + chr2.4:65097811-65097830 MS.gene047915:intron 25.0%
! TTTATACTAATTTAAGGAGC+TGG + chr2.4:65097176-65097195 MS.gene047915:intron 25.0%
!! GATGAATTGTTAATTTGACT+TGG + chr2.4:65096437-65096456 MS.gene047915:intron 25.0%
!! TGTTTGCTAATATCAAAAGA+GGG - chr2.4:65097320-65097339 None:intergenic 25.0%
!! TTGTTTGCTAATATCAAAAG+AGG - chr2.4:65097321-65097340 None:intergenic 25.0%
!!! TTTCGTTATTTTATGGACTT+TGG + chr2.4:65096050-65096069 MS.gene047915:CDS 25.0%
AAATAATAAGTGGGGTTGAA+AGG + chr2.4:65097819-65097838 MS.gene047915:intron 30.0%
AATCAAATGTTCGTGCATAT+TGG - chr2.4:65096856-65096875 None:intergenic 30.0%
AATGATCTGTTTACCAGAAA+AGG + chr2.4:65097266-65097285 MS.gene047915:intron 30.0%
AGAATAACACAGAACTTCAA+GGG - chr2.4:65097900-65097919 None:intergenic 30.0%
CAAATAGAAAACTTGTGTTC+TGG + chr2.4:65096342-65096361 MS.gene047915:CDS 30.0%
CAACCCCACTTATTATTTAT+AGG - chr2.4:65097817-65097836 None:intergenic 30.0%
CATAAAAAGGGTGAAATAGA+TGG - chr2.4:65096788-65096807 None:intergenic 30.0%
CTAAACATTTGAGTCAATTG+GGG + chr2.4:65097846-65097865 MS.gene047915:intron 30.0%
GACTATCTATTTATGATACC+TGG - chr2.4:65096379-65096398 None:intergenic 30.0%
GCTAAACATTTGAGTCAATT+GGG + chr2.4:65097845-65097864 MS.gene047915:intron 30.0%
GTATCTAGATTTAAAGAAGC+TGG + chr2.4:65097515-65097534 MS.gene047915:CDS 30.0%
TCAAACTTCAGCCATAAAAA+GGG - chr2.4:65096800-65096819 None:intergenic 30.0%
TGCATACGAACTATGTTATT+TGG + chr2.4:65096761-65096780 MS.gene047915:intron 30.0%
TTCAAACTTCAGCCATAAAA+AGG - chr2.4:65096801-65096820 None:intergenic 30.0%
TTCTCTCTGAACAATTCTTT+GGG + chr2.4:65096636-65096655 MS.gene047915:intron 30.0%
TTTCTCTCTGAACAATTCTT+TGG + chr2.4:65096635-65096654 MS.gene047915:intron 30.0%
TTTGCTTGAGAAGATAAAGT+CGG + chr2.4:65096241-65096260 MS.gene047915:CDS 30.0%
! CAATTGACTCAAATGTTTAG+CGG - chr2.4:65097846-65097865 None:intergenic 30.0%
! CATCTATTTCACCCTTTTTA+TGG + chr2.4:65096786-65096805 MS.gene047915:intron 30.0%
! GTTTGCTAATATCAAAAGAG+GGG - chr2.4:65097319-65097338 None:intergenic 30.0%
!! TTCATTGACTCTAGCTTTAT+GGG + chr2.4:65096473-65096492 MS.gene047915:intron 30.0%
!! TTTATCCTTTGAAATGTTGC+AGG + chr2.4:65097980-65097999 MS.gene047915:intron 30.0%
AAAAAAATCCCCTAGACTAC+AGG - chr2.4:65097923-65097942 None:intergenic 35.0%
AAACACACACTAAGCCAATT+AGG - chr2.4:65096678-65096697 None:intergenic 35.0%
AAATAGGATCACAACTAACG+AGG - chr2.4:65097392-65097411 None:intergenic 35.0%
AACTACTGAACTTTGTCTTG+TGG + chr2.4:65096172-65096191 MS.gene047915:intron 35.0%
ACCAAAGATGGCGAAAAAAT+AGG - chr2.4:65097408-65097427 None:intergenic 35.0%
CGCTAAACATTTGAGTCAAT+TGG + chr2.4:65097844-65097863 MS.gene047915:intron 35.0%
CTGAACATTCTTCTTATTGC+AGG + chr2.4:65097455-65097474 MS.gene047915:intron 35.0%
CTGGGAGAAATATTATGAAG+AGG + chr2.4:65097045-65097064 MS.gene047915:CDS 35.0%
GAATATTGGTCGAATTGAAG+TGG + chr2.4:65096319-65096338 MS.gene047915:CDS 35.0%
GAGAATAACACAGAACTTCA+AGG - chr2.4:65097901-65097920 None:intergenic 35.0%
TATCATCTGAAGAACTAGCT+CGG + chr2.4:65097493-65097512 MS.gene047915:CDS 35.0%
TCCCTGTCCTATAAAATGTT+CGG + chr2.4:65097363-65097382 MS.gene047915:intron 35.0%
TGTTATTCTCCTGTAGTCTA+GGG + chr2.4:65097911-65097930 MS.gene047915:intron 35.0%
TTTGCATCTTCAAATCGTGA+CGG - chr2.4:65097106-65097125 None:intergenic 35.0%
! AACCGAACATTTTATAGGAC+AGG - chr2.4:65097368-65097387 None:intergenic 35.0%
! ACCGAACATTTTATAGGACA+GGG - chr2.4:65097367-65097386 None:intergenic 35.0%
! AGCTTCGTGTACTCATTTTA+GGG + chr2.4:65096095-65096114 MS.gene047915:CDS 35.0%
! CTGATATGTATGTCACTTGA+GGG + chr2.4:65097727-65097746 MS.gene047915:intron 35.0%
! GAGGAAACCGAACATTTTAT+AGG - chr2.4:65097373-65097392 None:intergenic 35.0%
! TCTGATATGTATGTCACTTG+AGG + chr2.4:65097726-65097745 MS.gene047915:intron 35.0%
!! AAATGGTAATGGATCATCAC+AGG - chr2.4:65097620-65097639 None:intergenic 35.0%
!! ACTCATTTTAGGGATTGACA+AGG + chr2.4:65096105-65096124 MS.gene047915:CDS 35.0%
!! GTTCATTGACTCTAGCTTTA+TGG + chr2.4:65096472-65096491 MS.gene047915:intron 35.0%
!!! TCCTATTTTTTCGCCATCTT+TGG + chr2.4:65097404-65097423 MS.gene047915:intron 35.0%
ACAGTTGGAACAATTCGATC+AGG - chr2.4:65096293-65096312 None:intergenic 40.0%
CACTAAGCCAATTAGGTTAG+TGG - chr2.4:65096671-65096690 None:intergenic 40.0%
CCAACTGTGGGATTGAATAT+TGG + chr2.4:65096305-65096324 MS.gene047915:CDS 40.0%
CCAATATTCAATCCCACAGT+TGG - chr2.4:65096308-65096327 None:intergenic 40.0%
GACTGAAATGTTGAGATTGC+GGG + chr2.4:65098059-65098078 MS.gene047915:CDS 40.0%
GATCGAATTGTTCCAACTGT+GGG + chr2.4:65096293-65096312 MS.gene047915:CDS 40.0%
GGACTGAAATGTTGAGATTG+CGG + chr2.4:65098058-65098077 MS.gene047915:CDS 40.0%
GTTATTCTCCTGTAGTCTAG+GGG + chr2.4:65097912-65097931 MS.gene047915:intron 40.0%
GTTGATACACACACCAAAGA+TGG - chr2.4:65097420-65097439 None:intergenic 40.0%
TCTACATTACATAGTTCCCG+AGG + chr2.4:65096546-65096565 MS.gene047915:intron 40.0%
TCTCACTTACCCATCATATG+CGG - chr2.4:65097571-65097590 None:intergenic 40.0%
TCTTCAGATGATACTGCTTC+AGG - chr2.4:65097486-65097505 None:intergenic 40.0%
TGATCGAATTGTTCCAACTG+TGG + chr2.4:65096292-65096311 MS.gene047915:CDS 40.0%
! CTCTGAACAATTCTTTGGGA+AGG + chr2.4:65096640-65096659 MS.gene047915:intron 40.0%
! GAGCTTCGTGTACTCATTTT+AGG + chr2.4:65096094-65096113 MS.gene047915:CDS 40.0%
! GTGTTATTCTCCTGTAGTCT+AGG + chr2.4:65097910-65097929 MS.gene047915:intron 40.0%
!! ATTTTAGGGATTGACAAGGC+TGG + chr2.4:65096109-65096128 MS.gene047915:CDS 40.0%
AATTTCCCCGCTTATCAGCT+TGG + chr2.4:65097010-65097029 MS.gene047915:intron 45.0%
AGTGATAGCAAGATGTGCAG+AGG - chr2.4:65096953-65096972 None:intergenic 45.0%
CTTCGACATGAGGATCTCAA+AGG + chr2.4:65097291-65097310 MS.gene047915:CDS 45.0%
GAAGATGCAAAGTCTGCACT+TGG + chr2.4:65097115-65097134 MS.gene047915:CDS 45.0%
GATTGACAAGGCTGGCAAAA+CGG + chr2.4:65096117-65096136 MS.gene047915:CDS 45.0%
GGCTACTCCACTAACCTAAT+TGG + chr2.4:65096661-65096680 MS.gene047915:intron 45.0%
GGTGTGTGTATCAACAGTGA+TGG + chr2.4:65097425-65097444 MS.gene047915:intron 45.0%
GTTGGAACAATTCGATCAGG+AGG - chr2.4:65096290-65096309 None:intergenic 45.0%
TCGGTGTACACAAACGTAGA+AGG + chr2.4:65096260-65096279 MS.gene047915:CDS 45.0%
TTACCCATCATATGCGGACA+CGG - chr2.4:65097565-65097584 None:intergenic 45.0%
TTGAGTCAATTGGGGCCTTT+GGG + chr2.4:65097854-65097873 MS.gene047915:intron 45.0%
TTTGAGTCAATTGGGGCCTT+TGG + chr2.4:65097853-65097872 MS.gene047915:intron 45.0%
! AAGTGATGGAGAGAAGCAAG+AGG + chr2.4:65098037-65098056 MS.gene047915:CDS 45.0%
! AGAATGGCTTGTGGAAGTGA+TGG + chr2.4:65098023-65098042 MS.gene047915:CDS 45.0%
!! AAAACTTGTGTTCTGGGACC+TGG + chr2.4:65096349-65096368 MS.gene047915:CDS 45.0%
!! AAACTTGTGTTCTGGGACCT+GGG + chr2.4:65096350-65096369 MS.gene047915:CDS 45.0%
!! AGAAAAGGTGCTTCGACATG+AGG + chr2.4:65097281-65097300 MS.gene047915:intron 45.0%
!! CCTTTGAAATGTTGCAGGCT+GGG + chr2.4:65097985-65098004 MS.gene047915:intron 45.0%
!! CTTTGAAATGTTGCAGGCTG+GGG + chr2.4:65097986-65098005 MS.gene047915:intron 45.0%
!! TCATGTCGAAGCACCTTTTC+TGG - chr2.4:65097282-65097301 None:intergenic 45.0%
!! TCCTTTGAAATGTTGCAGGC+TGG + chr2.4:65097984-65098003 MS.gene047915:intron 45.0%
AAGCCGTGTCCGCATATGAT+GGG + chr2.4:65097559-65097578 MS.gene047915:CDS 50.0%
CCCAGCCTGCAACATTTCAA+AGG - chr2.4:65097988-65098007 None:intergenic 50.0%
CGAAGACCAAGCTGATAAGC+GGG - chr2.4:65097019-65097038 None:intergenic 50.0%
GAAATGTTGAGATTGCGGGC+AGG + chr2.4:65098063-65098082 MS.gene047915:CDS 50.0%
GAAGACCAAGCTGATAAGCG+GGG - chr2.4:65097018-65097037 None:intergenic 50.0%
GCGAAGACCAAGCTGATAAG+CGG - chr2.4:65097020-65097039 None:intergenic 50.0%
TCCTGCTACTACAAGTGTGC+AGG - chr2.4:65096908-65096927 None:intergenic 50.0%
! AGCTTGGTCTTCGCTCAATC+TGG + chr2.4:65097026-65097045 MS.gene047915:intron 50.0%
! GCTTGGTCTTCGCTCAATCT+GGG + chr2.4:65097027-65097046 MS.gene047915:intron 50.0%
! GGAAAGTGCAGAATGGCTTG+TGG + chr2.4:65098014-65098033 MS.gene047915:CDS 50.0%
! GGATCAGGGAAAGTGCAGAA+TGG + chr2.4:65098007-65098026 MS.gene047915:CDS 50.0%
AATGTTGCAGGCTGGGGATC+AGG + chr2.4:65097992-65098011 MS.gene047915:intron 55.0%
AGATTGCGGGCAGGTGCAAT+GGG + chr2.4:65098072-65098091 MS.gene047915:CDS 55.0%
ATGTTGCAGGCTGGGGATCA+GGG + chr2.4:65097993-65098012 MS.gene047915:intron 55.0%
CAATTGGGGCCTTTGGGCAT+TGG + chr2.4:65097860-65097879 MS.gene047915:intron 55.0%
GAAGCCGTGTCCGCATATGA+TGG + chr2.4:65097558-65097577 MS.gene047915:CDS 55.0%
GCCTGCACACTTGTAGTAGC+AGG + chr2.4:65096904-65096923 MS.gene047915:intron 55.0%
TTTATGATACCTGGCCGCCC+AGG - chr2.4:65096370-65096389 None:intergenic 55.0%
GAGATTGCGGGCAGGTGCAA+TGG + chr2.4:65098071-65098090 MS.gene047915:CDS 60.0%
TGCCCCCTACCAATGCCCAA+AGG - chr2.4:65097872-65097891 None:intergenic 60.0%
!! CTTGTGTTCTGGGACCTGGG+CGG + chr2.4:65096353-65096372 MS.gene047915:CDS 60.0%
!! GGCCTTTGGGCATTGGTAGG+GGG + chr2.4:65097867-65097886 MS.gene047915:intron 60.0%
!! GGGCCTTTGGGCATTGGTAG+GGG + chr2.4:65097866-65097885 MS.gene047915:intron 60.0%
!! GGGGCCTTTGGGCATTGGTA+GGG + chr2.4:65097865-65097884 MS.gene047915:intron 60.0%
!! TGGGGCCTTTGGGCATTGGT+AGG + chr2.4:65097864-65097883 MS.gene047915:intron 60.0%
!! TGGGCATTGGTAGGGGGCAC+AGG + chr2.4:65097873-65097892 MS.gene047915:intron 65.0%
CGGGCAGGTGCAATGGGTCC+AGG + chr2.4:65098078-65098097 MS.gene047915:CDS 70.0%
!! GTTCTGGGACCTGGGCGGCC+AGG + chr2.4:65096358-65096377 MS.gene047915:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 65096046 65098110 65096046 ID=MS.gene047915
chr2.4 mRNA 65096046 65098110 65096046 ID=MS.gene047915.t1;Parent=MS.gene047915
chr2.4 exon 65096046 65096138 65096046 ID=MS.gene047915.t1.exon1;Parent=MS.gene047915.t1
chr2.4 CDS 65096046 65096138 65096046 ID=cds.MS.gene047915.t1;Parent=MS.gene047915.t1
chr2.4 exon 65096239 65096379 65096239 ID=MS.gene047915.t1.exon2;Parent=MS.gene047915.t1
chr2.4 CDS 65096239 65096379 65096239 ID=cds.MS.gene047915.t1;Parent=MS.gene047915.t1
chr2.4 exon 65097028 65097136 65097028 ID=MS.gene047915.t1.exon3;Parent=MS.gene047915.t1
chr2.4 CDS 65097028 65097136 65097028 ID=cds.MS.gene047915.t1;Parent=MS.gene047915.t1
chr2.4 exon 65097283 65097344 65097283 ID=MS.gene047915.t1.exon4;Parent=MS.gene047915.t1
chr2.4 CDS 65097283 65097344 65097283 ID=cds.MS.gene047915.t1;Parent=MS.gene047915.t1
chr2.4 exon 65097477 65097580 65097477 ID=MS.gene047915.t1.exon5;Parent=MS.gene047915.t1
chr2.4 CDS 65097477 65097580 65097477 ID=cds.MS.gene047915.t1;Parent=MS.gene047915.t1
chr2.4 exon 65098002 65098110 65098002 ID=MS.gene047915.t1.exon6;Parent=MS.gene047915.t1
chr2.4 CDS 65098002 65098110 65098002 ID=cds.MS.gene047915.t1;Parent=MS.gene047915.t1
Gene Sequence

>MS.gene047915

ATGTTTTCGTTATTTTATGGACTTTGGCAGTTCATGTTCAGCAAGTTAGAGCTTCGTGTACTCATTTTAGGGATTGACAAGGCTGGCAAAACGGTAATATATCTTTCAATCCCTTATTTTTTAAGAAACTACTGAACTTTGTCTTGTGGCTCTGAGTTGTTTTATAATTGCTATATAATGAATAATTGTGTAGACTTTGCTTGAGAAGATAAAGTCGGTGTACACAAACGTAGAAGGTCTTCCTCCTGATCGAATTGTTCCAACTGTGGGATTGAATATTGGTCGAATTGAAGTGGCAAATAGAAAACTTGTGTTCTGGGACCTGGGCGGCCAGGTATCATAAATAGATAGTCAATACTTATCTTTGTAAATTCTATAATTATGATATTTGGATGAATTGTTAATTTGACTTGGCAAAGTAATTTTGTTCATTGACTCTAGCTTTATGGGCTGCTTGTCAAAATCATTTCATTCTACTTCAATGGCTAATATAATAAACATCTACATTACATAGTTCCCGAGGTCTTATTTTTTATGTTTCTTTATAAAGTTAAAATGCAATTAATTAATGAAAGAACAAGAAACTGTTTTTCTCTCTGAACAATTCTTTGGGAAGGCTACTCCACTAACCTAATTGGCTTAGTGTGTGTTTGTTTATTTTAAATTATAGGTTTGTTATTTTATCTTCAATCCATAAGAACTGTTACTTTATATATGCATACGAACTATGTTATTTGGACCATCTATTTCACCCTTTTTATGGCTGAAGTTTGAATTTACAAGAGATTTTGCGTTTACAAAATTAGTCCAATATGCACGAACATTTGATTCAGTACTTCATTTTTAACTGAAATATAAGCCTGCACACTTGTAGTAGCAGGAATAGAATGTATCATTTTGTGTACCTCTGCACATCTTGCTATCACTATGTCCCTTTTCATATTATAAGATAAAATGTTAATTTAATTTCCCCGCTTATCAGCTTGGTCTTCGCTCAATCTGGGAGAAATATTATGAAGAGGCACATGCTGTTGTATTTGTTATAGACGCATCTTGTCCGTCACGATTTGAAGATGCAAAGTCTGCACTTGGTTAGTGAGACTTGATTTTAGTATTTGTAAATAACTAAATTTATACTAATTTAAGGAGCTGGCTTGCAGTTGCAAGTTTGCAATAGTACTATATATGTTGAAATTAAACAGCACGGTGATAATTTAATAAATGATCTGTTTACCAGAAAAGGTGCTTCGACATGAGGATCTCAAAGGAGCCCCTCTTTTGATATTAGCAAACAAGCAAGTGAGTGTGACTATTCACTCCCTGTCCTATAAAATGTTCGGTTTCCTCGTTAGTTGTGATCCTATTTTTTCGCCATCTTTGGTGTGTGTATCAACAGTGATGGCTGCATGCTGAACATTCTTCTTATTGCAGGATCTTCCTGAAGCAGTATCATCTGAAGAACTAGCTCGGTATCTAGATTTAAAGAAGCTGGACGAAAGAGTCTACATGTTTGAAGCCGTGTCCGCATATGATGGGTAAGTGAGAAGTTGTATAAAATTTTCAAATCTTAACCTGTGATGATCCATTACCATTTCATTTTCAATAAGGATCGAGATATCTGATGTAAGAAAAAAATAACCATTAAGGTACATAATGAAGTACTTACTGAATGAACTTTATTCTGATATGTATGTCACTTGAGGGAATTAGTTAGTTAGTCTGTTTGTTATTATTAATTAATGAGTGATAGGAAAAATAAGACATGTTGCCTATAAATAATAAGTGGGGTTGAAAGGACCGCTAAACATTTGAGTCAATTGGGGCCTTTGGGCATTGGTAGGGGGCACAGGACCCTTGAAGTTCTGTGTTATTCTCCTGTAGTCTAGGGGATTTTTTTTCCTAATTCTTTGTATTACATTTCTAGTTCACATCACTTTATCCTTTGAAATGTTGCAGGCTGGGGATCAGGGAAAGTGCAGAATGGCTTGTGGAAGTGATGGAGAGAAGCAAGAGGACTGAAATGTTGAGATTGCGGGCAGGTGCAATGGGTCCAGGTCCTGCCTAG
Protein sequence

>MS.gene047915.t1

MFSLFYGLWQFMFSKLELRVLILGIDKAGKTTLLEKIKSVYTNVEGLPPDRIVPTVGLNIGRIEVANRKLVFWDLGGQLGLRSIWEKYYEEAHAVVFVIDASCPSRFEDAKSALEKVLRHEDLKGAPLLILANKQDLPEAVSSEELARYLDLKKLDERVYMFEAVSAYDGLGIRESAEWLVEVMERSKRTEMLRLRAGAMGPGPA