Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84703.t1 | XP_003601923.1 | 98.1 | 720 | 14 | 0 | 1 | 720 | 1 | 720 | 0.00E+00 | 1376.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84703.t1 | Q54Q92 | 27.6 | 605 | 352 | 15 | 1 | 543 | 4 | 584 | 9.3e-45 | 183.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84703.t1 | G7J381 | 98.1 | 720 | 14 | 0 | 1 | 720 | 1 | 720 | 0.0e+00 | 1376.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene84703 | 0.806081 | 9.78E-50 | -1.69E-46 |
| MS.gene04918 | MS.gene84703 | 0.831107 | 2.01E-55 | -1.69E-46 |
| MS.gene049193 | MS.gene84703 | 0.80027 | 1.56E-48 | -1.69E-46 |
| MS.gene04919 | MS.gene84703 | 0.82848 | 8.78E-55 | -1.69E-46 |
| MS.gene04920 | MS.gene84703 | 0.844436 | 7.57E-59 | -1.69E-46 |
| MS.gene049227 | MS.gene84703 | 0.819137 | 1.36E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene84703 | 0.839065 | 1.98E-57 | -1.69E-46 |
| MS.gene049368 | MS.gene84703 | 0.817376 | 3.40E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene84703 | 0.852494 | 4.45E-61 | -1.69E-46 |
| MS.gene049711 | MS.gene84703 | 0.817751 | 2.80E-52 | -1.69E-46 |
| MS.gene049807 | MS.gene84703 | 0.810428 | 1.16E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene84703 | 0.819508 | 1.12E-52 | -1.69E-46 |
| MS.gene050213 | MS.gene84703 | 0.823948 | 1.05E-53 | -1.69E-46 |
| MS.gene050238 | MS.gene84703 | 0.82572 | 4.02E-54 | -1.69E-46 |
| MS.gene050257 | MS.gene84703 | 0.836757 | 7.76E-57 | -1.69E-46 |
| MS.gene050258 | MS.gene84703 | 0.847209 | 1.34E-59 | -1.69E-46 |
| MS.gene050348 | MS.gene84703 | 0.806369 | 8.51E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene84703 | 0.858189 | 9.77E-63 | -1.69E-46 |
| MS.gene050646 | MS.gene84703 | 0.809377 | 1.95E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene84703 | 0.828963 | 6.71E-55 | -1.69E-46 |
| MS.gene051019 | MS.gene84703 | 0.81123 | 7.77E-51 | -1.69E-46 |
| MS.gene051209 | MS.gene84703 | 0.812758 | 3.61E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene84703 | 0.804884 | 1.74E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene84703 | 0.819121 | 1.37E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene84703 | 0.80202 | 6.84E-49 | -1.69E-46 |
| MS.gene051538 | MS.gene84703 | 0.813616 | 2.34E-51 | -1.69E-46 |
| MS.gene051699 | MS.gene84703 | 0.82202 | 2.96E-53 | -1.69E-46 |
| MS.gene051821 | MS.gene84703 | 0.803801 | 2.93E-49 | -1.69E-46 |
| MS.gene051823 | MS.gene84703 | 0.805761 | 1.14E-49 | -1.69E-46 |
| MS.gene051959 | MS.gene84703 | 0.806544 | 7.81E-50 | -1.69E-46 |
| MS.gene051960 | MS.gene84703 | 0.816792 | 4.61E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene84703 | 0.852696 | 3.90E-61 | -1.69E-46 |
| MS.gene052072 | MS.gene84703 | 0.809459 | 1.87E-50 | -1.69E-46 |
| MS.gene052168 | MS.gene84703 | 0.821323 | 4.29E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene84703 | 0.837847 | 4.08E-57 | -1.69E-46 |
| MS.gene052514 | MS.gene84703 | 0.820767 | 5.76E-53 | -1.69E-46 |
| MS.gene052533 | MS.gene84703 | 0.812864 | 3.42E-51 | -1.69E-46 |
| MS.gene052570 | MS.gene84703 | 0.843688 | 1.20E-58 | -1.69E-46 |
| MS.gene052609 | MS.gene84703 | 0.846214 | 2.50E-59 | -1.69E-46 |
| MS.gene052775 | MS.gene84703 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene052793 | MS.gene84703 | 0.807193 | 5.70E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene84703 | 0.813574 | 2.39E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene84703 | 0.843688 | 1.20E-58 | -1.69E-46 |
| MS.gene053272 | MS.gene84703 | -0.838845 | 2.26E-57 | -1.69E-46 |
| MS.gene053427 | MS.gene84703 | 0.807996 | 3.85E-50 | -1.69E-46 |
| MS.gene054142 | MS.gene84703 | 0.820634 | 6.18E-53 | -1.69E-46 |
| MS.gene054178 | MS.gene84703 | 0.86764 | 1.18E-65 | -1.69E-46 |
| MS.gene05454 | MS.gene84703 | 0.806296 | 8.81E-50 | -1.69E-46 |
| MS.gene054641 | MS.gene84703 | 0.830365 | 3.06E-55 | -1.69E-46 |
| MS.gene054892 | MS.gene84703 | 0.839069 | 1.98E-57 | -1.69E-46 |
| MS.gene054893 | MS.gene84703 | 0.843607 | 1.26E-58 | -1.69E-46 |
| MS.gene054957 | MS.gene84703 | 0.803992 | 2.68E-49 | -1.69E-46 |
| MS.gene055386 | MS.gene84703 | 0.858923 | 5.90E-63 | -1.69E-46 |
| MS.gene05539 | MS.gene84703 | 0.80858 | 2.89E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene84703 | 0.816079 | 6.65E-52 | -1.69E-46 |
| MS.gene056082 | MS.gene84703 | 0.808364 | 3.21E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene84703 | 0.808879 | 2.49E-50 | -1.69E-46 |
| MS.gene056363 | MS.gene84703 | 0.812326 | 4.49E-51 | -1.69E-46 |
| MS.gene056519 | MS.gene84703 | 0.844507 | 7.24E-59 | -1.69E-46 |
| MS.gene056578 | MS.gene84703 | 0.80269 | 4.98E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene84703 | 0.812408 | 4.30E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene84703 | 0.809303 | 2.02E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene84703 | 0.854625 | 1.09E-61 | -1.69E-46 |
| MS.gene057102 | MS.gene84703 | 0.832082 | 1.16E-55 | -1.69E-46 |
| MS.gene057148 | MS.gene84703 | -0.810492 | 1.12E-50 | -1.69E-46 |
| MS.gene057174 | MS.gene84703 | 0.850735 | 1.40E-60 | -1.69E-46 |
| MS.gene057329 | MS.gene84703 | 0.842325 | 2.77E-58 | -1.69E-46 |
| MS.gene057344 | MS.gene84703 | 0.805182 | 1.51E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene84703 | 0.833118 | 6.41E-56 | -1.69E-46 |
| MS.gene058159 | MS.gene84703 | 0.821156 | 4.69E-53 | -1.69E-46 |
| MS.gene058649 | MS.gene84703 | 0.809289 | 2.04E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene84703 | 0.833768 | 4.41E-56 | -1.69E-46 |
| MS.gene05897 | MS.gene84703 | 0.802661 | 5.05E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene84703 | 0.820844 | 5.53E-53 | -1.69E-46 |
| MS.gene059634 | MS.gene84703 | 0.851132 | 1.08E-60 | -1.69E-46 |
| MS.gene059778 | MS.gene84703 | 0.868053 | 8.69E-66 | -1.69E-46 |
| MS.gene05985 | MS.gene84703 | -0.848728 | 5.09E-60 | -1.69E-46 |
| MS.gene060522 | MS.gene84703 | 0.898584 | 4.60E-77 | -1.69E-46 |
| MS.gene060777 | MS.gene84703 | 0.805617 | 1.22E-49 | -1.69E-46 |
| MS.gene060785 | MS.gene84703 | 0.812627 | 3.86E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene84703 | 0.878367 | 2.98E-69 | -1.69E-46 |
| MS.gene060935 | MS.gene84703 | 0.836684 | 8.10E-57 | -1.69E-46 |
| MS.gene060937 | MS.gene84703 | 0.857227 | 1.88E-62 | -1.69E-46 |
| MS.gene061100 | MS.gene84703 | 0.899741 | 1.47E-77 | -1.69E-46 |
| MS.gene061160 | MS.gene84703 | 0.877833 | 4.57E-69 | -1.69E-46 |
| MS.gene061188 | MS.gene84703 | 0.829063 | 6.35E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84703.t1 | MTR_3g086840 | 98.056 | 720 | 14 | 0 | 1 | 720 | 1 | 720 | 0.0 | 1462 |
| MS.gene84703.t1 | MTR_8g089925 | 79.889 | 721 | 139 | 4 | 1 | 718 | 1 | 718 | 0.0 | 1203 |
| MS.gene84703.t1 | MTR_8g089925 | 78.003 | 591 | 124 | 4 | 131 | 718 | 1 | 588 | 0.0 | 962 |
| MS.gene84703.t1 | MTR_4g094110 | 64.106 | 716 | 233 | 10 | 1 | 709 | 1 | 699 | 0.0 | 913 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84703.t1 | AT5G65290 | 71.196 | 736 | 190 | 9 | 1 | 720 | 1 | 730 | 0.0 | 1041 |
| MS.gene84703.t1 | AT5G65290 | 78.519 | 540 | 110 | 3 | 1 | 536 | 1 | 538 | 0.0 | 872 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAACGCCGTCCCTTTATT+TGG | 0.138899 | 3.4:-80833430 | MS.gene84703:CDS |
| TTCTCGTCCCTGCTGATATT+TGG | 0.160912 | 3.4:-80842388 | MS.gene84703:CDS |
| AAACCACAAGGCGGGCAATT+AGG | 0.191717 | 3.4:-80838957 | MS.gene84703:CDS |
| TCAAATATAGTTTCTTTATT+AGG | 0.194715 | 3.4:+80834129 | None:intergenic |
| GTTACTGGTGCATTTCTTCT+TGG | 0.201801 | 3.4:-80839939 | MS.gene84703:CDS |
| ATGGAGGTATTTCTTTCTTT+TGG | 0.213086 | 3.4:-80841515 | MS.gene84703:CDS |
| GGTGCATTTCTTCTTGGTTT+TGG | 0.219379 | 3.4:-80839933 | MS.gene84703:CDS |
| GTTAACTGAGCTGGTTTGTC+TGG | 0.226512 | 3.4:+80834332 | None:intergenic |
| CAAAATTTATCCGCTTATTA+TGG | 0.237697 | 3.4:-80833395 | MS.gene84703:CDS |
| TATTATTTGCAGAATTCTTT+TGG | 0.241151 | 3.4:-80835594 | MS.gene84703:intron |
| ATGACTTGCTCAAATACTTT+TGG | 0.241273 | 3.4:-80839966 | MS.gene84703:CDS |
| TGTCTCTTCATCCATAGTTT+TGG | 0.243444 | 3.4:+80832798 | None:intergenic |
| AACCACAAGGCGGGCAATTA+GGG | 0.255023 | 3.4:-80838956 | MS.gene84703:CDS |
| CATCTTCAAAACCTTGAATA+AGG | 0.267615 | 3.4:+80840896 | None:intergenic |
| TTAAACCTGTCCCCAAATAA+AGG | 0.272474 | 3.4:+80833418 | None:intergenic |
| ACAACGCCGTCCCTTTATTT+GGG | 0.282924 | 3.4:-80833429 | MS.gene84703:CDS |
| AGCAAGTACGCTGCAATTAG+AGG | 0.298768 | 3.4:-80832742 | MS.gene84703:CDS |
| TGAGGAAGTTGTATGATATA+GGG | 0.300928 | 3.4:+80834169 | None:intergenic |
| TCTCGTCCCTGCTGATATTT+GGG | 0.304058 | 3.4:-80842387 | MS.gene84703:CDS |
| CAAAACTGAAGCAGAGGATA+TGG | 0.304694 | 3.4:-80833293 | MS.gene84703:CDS |
| TGCAGCGTACTTGCTGCTTA+TGG | 0.304776 | 3.4:+80832750 | None:intergenic |
| GGGATCCTTATTTAATACTT+TGG | 0.324766 | 3.4:-80838117 | MS.gene84703:CDS |
| AAGCAGGAGTGGGAGCCTTA+TGG | 0.325612 | 3.4:-80839997 | MS.gene84703:intron |
| GGATCCTTATTTAATACTTT+GGG | 0.327645 | 3.4:-80838116 | MS.gene84703:intron |
| TTGAGGAAGTTGTATGATAT+AGG | 0.327982 | 3.4:+80834168 | None:intergenic |
| TACTACTCTTTGTTCAAAAT+CGG | 0.331193 | 3.4:-80834381 | MS.gene84703:CDS |
| CAATAGCATTGGAAAGTTCT+TGG | 0.333733 | 3.4:+80839802 | None:intergenic |
| CATCCAGTTTGACAGCCATT+TGG | 0.337713 | 3.4:+80839832 | None:intergenic |
| TGGAGCACCATCTTCGGGTT+TGG | 0.340533 | 3.4:-80832623 | MS.gene84703:CDS |
| ATCCAGTTTGACAGCCATTT+GGG | 0.348188 | 3.4:+80839833 | None:intergenic |
| ATTACCCAAAGTATTAAATA+AGG | 0.349352 | 3.4:+80838112 | None:intergenic |
| TTCAGCTGGAGCACCATCTT+CGG | 0.350183 | 3.4:-80832629 | MS.gene84703:CDS |
| CGGAGGTATATCCAAAACTA+TGG | 0.350526 | 3.4:-80832809 | MS.gene84703:CDS |
| TGCCCAAATGGCTGTCAAAC+TGG | 0.351462 | 3.4:-80839835 | MS.gene84703:CDS |
| TATCTAATTGTTGGATCCAT+TGG | 0.353040 | 3.4:-80840814 | MS.gene84703:CDS |
| AGCACCATTCCCGTTGTTAG+AGG | 0.360366 | 3.4:+80842503 | None:intergenic |
| TTGGTCTTCTATCTAATTGT+TGG | 0.362110 | 3.4:-80840823 | MS.gene84703:CDS |
| CTTGAACAAGGGCGCAAAAT+CGG | 0.364439 | 3.4:-80833094 | MS.gene84703:CDS |
| TATGGTTACATACACCGTTT+TGG | 0.368794 | 3.4:-80833377 | MS.gene84703:CDS |
| TTGAACAAGGGCGCAAAATC+GGG | 0.378695 | 3.4:-80833093 | MS.gene84703:CDS |
| GCAATTAGGGGAAAATGATA+TGG | 0.380335 | 3.4:-80838943 | MS.gene84703:CDS |
| TCAGCTGGAGCACCATCTTC+GGG | 0.382820 | 3.4:-80832628 | MS.gene84703:CDS |
| AGCAGGGACGAGAATGATAA+TGG | 0.384683 | 3.4:+80842397 | None:intergenic |
| ATCTTCAAAACCTTGAATAA+GGG | 0.385541 | 3.4:+80840897 | None:intergenic |
| GTGAAATTCCTAAAAGCATC+TGG | 0.388838 | 3.4:-80839905 | MS.gene84703:CDS |
| TATGAACGCCGCAAGTCAAC+TGG | 0.391408 | 3.4:-80838311 | MS.gene84703:CDS |
| TTCCCACAAAATTGCCCAAA+TGG | 0.393163 | 3.4:-80839847 | MS.gene84703:CDS |
| AGCAGAGGATATGGATGGTT+TGG | 0.400479 | 3.4:-80833284 | MS.gene84703:CDS |
| ACATCTGCTTGGAAGTTGCT+TGG | 0.405047 | 3.4:+80839157 | None:intergenic |
| CAACGGACTTGATATTGAAT+CGG | 0.409675 | 3.4:-80833038 | MS.gene84703:CDS |
| AGCAGGAGTGGGAGCCTTAT+GGG | 0.410727 | 3.4:-80839996 | MS.gene84703:intron |
| GCTGTGGCACCCCTTATTCA+AGG | 0.413324 | 3.4:-80840907 | MS.gene84703:CDS |
| TCGTCAATAACATTCATATA+AGG | 0.419796 | 3.4:+80839114 | None:intergenic |
| CATCTGCTTGGAAGTTGCTT+GGG | 0.419895 | 3.4:+80839158 | None:intergenic |
| TGACGATATGCTTACTCAAA+TGG | 0.422170 | 3.4:-80839097 | MS.gene84703:intron |
| TTCATCAAGCGCAGAATAAG+AGG | 0.422203 | 3.4:+80832672 | None:intergenic |
| TATCTATGATTGCAGCGAAT+GGG | 0.425215 | 3.4:-80833460 | MS.gene84703:intron |
| CTAAACTAAGGCGTCATCTT+CGG | 0.426988 | 3.4:-80838893 | MS.gene84703:CDS |
| CCTCGTCATTGTAAGTAACT+TGG | 0.428128 | 3.4:+80832434 | None:intergenic |
| TTCTTCTTCAGTAATTAAAT+CGG | 0.439054 | 3.4:+80832834 | None:intergenic |
| CAGAGTTTCAAGTCCAACAT+AGG | 0.440272 | 3.4:-80832568 | MS.gene84703:CDS |
| CCGCCTTGTGGTTTGAATGA+AGG | 0.440418 | 3.4:+80838966 | None:intergenic |
| AGCACGTATCTAGGAACATC+TGG | 0.446451 | 3.4:+80842455 | None:intergenic |
| CCGTCCCTTTATTTGGGGAC+AGG | 0.447195 | 3.4:-80833423 | MS.gene84703:CDS |
| GATGAAGAGACAAGGAGATA+TGG | 0.447213 | 3.4:-80832787 | MS.gene84703:CDS |
| TCTGTTCGGACTGGCAAGTT+GGG | 0.447336 | 3.4:-80838137 | MS.gene84703:CDS |
| ATCTCGCTTCCTCTAACAAC+GGG | 0.449941 | 3.4:-80842512 | MS.gene84703:CDS |
| AACGGACTTGATATTGAATC+GGG | 0.450684 | 3.4:-80833037 | MS.gene84703:CDS |
| TTAAGGAAACAAGTTGAGAA+AGG | 0.458142 | 3.4:-80835562 | MS.gene84703:CDS |
| TTCTTCTCATTATGATGCAC+AGG | 0.460422 | 3.4:-80840777 | MS.gene84703:CDS |
| TCTTATTCTGCGCTTGATGA+AGG | 0.462589 | 3.4:-80832670 | MS.gene84703:CDS |
| TTATCGTATCTTCCAACTCA+AGG | 0.467532 | 3.4:+80838339 | None:intergenic |
| CAGATGCACATGTACATTAG+TGG | 0.471011 | 3.4:+80834408 | None:intergenic |
| CATAAGTAAGTTAACTGAGC+TGG | 0.472174 | 3.4:+80834323 | None:intergenic |
| TAAAGAAACTATATTTGAAA+AGG | 0.474544 | 3.4:-80834124 | MS.gene84703:intron |
| TAAGTAACTTGGTTCAAAGA+TGG | 0.475479 | 3.4:+80832445 | None:intergenic |
| GACTAGTGTGCATGTTAACT+TGG | 0.477495 | 3.4:-80840842 | MS.gene84703:CDS |
| TTGTTAGAGGAAGCGAGATC+AGG | 0.477817 | 3.4:+80842516 | None:intergenic |
| TGAGTATATAACTTATGTAC+TGG | 0.479540 | 3.4:-80838366 | MS.gene84703:CDS |
| TAAACCTGTCCCCAAATAAA+GGG | 0.479597 | 3.4:+80833419 | None:intergenic |
| ATCTGTTCGGACTGGCAAGT+TGG | 0.486558 | 3.4:-80838138 | MS.gene84703:CDS |
| AGAGTTTCAAGTCCAACATA+GGG | 0.488494 | 3.4:-80832567 | MS.gene84703:CDS |
| ATCCCGCTTGGACATCTGCT+TGG | 0.488961 | 3.4:+80839146 | None:intergenic |
| GCGCAAAATCGGGGAAGAGC+AGG | 0.491919 | 3.4:-80833083 | MS.gene84703:CDS |
| GAGGAAGTTGTATGATATAG+GGG | 0.492511 | 3.4:+80834170 | None:intergenic |
| CAACGCCGTCCCTTTATTTG+GGG | 0.494059 | 3.4:-80833428 | MS.gene84703:CDS |
| TTAATTACTGAAGAAGAAAA+CGG | 0.496066 | 3.4:-80832829 | MS.gene84703:CDS |
| GCATCTGGAGAAATGCTGAT+TGG | 0.499524 | 3.4:-80839890 | MS.gene84703:CDS |
| TCCCCTAATTGCCCGCCTTG+TGG | 0.501900 | 3.4:+80838954 | None:intergenic |
| ATCACTTACAACAATAGCAT+TGG | 0.505667 | 3.4:+80839791 | None:intergenic |
| GTACGCTGCAATTAGAGGGC+AGG | 0.507649 | 3.4:-80832737 | MS.gene84703:CDS |
| TCATTATGATGCACAGGACC+TGG | 0.509715 | 3.4:-80840771 | MS.gene84703:intron |
| TTAACTGAGCTGGTTTGTCT+GGG | 0.512639 | 3.4:+80834333 | None:intergenic |
| ACGGCAAACACAGGAAAATA+CGG | 0.512908 | 3.4:-80832524 | MS.gene84703:CDS |
| TGTAAAATAATTAGTCCGGA+TGG | 0.513683 | 3.4:+80833259 | None:intergenic |
| TATAAAATCCGTTCGAACAC+AGG | 0.517451 | 3.4:-80835446 | MS.gene84703:CDS |
| AGGAGTATTATAGATACAAA+AGG | 0.519923 | 3.4:-80838860 | MS.gene84703:intron |
| AAGTCATGGCAAATCCCATA+AGG | 0.521001 | 3.4:+80839982 | None:intergenic |
| ACGGTGAAAAGCACGTATCT+AGG | 0.525843 | 3.4:+80842446 | None:intergenic |
| CTTCGGGTTTGGCTTCGACA+TGG | 0.526937 | 3.4:-80832612 | MS.gene84703:CDS |
| ATAGCTTCTCACAATGAGAA+TGG | 0.527440 | 3.4:-80841534 | MS.gene84703:CDS |
| TTCACGTTGAGGTACTTCGC+TGG | 0.527462 | 3.4:-80842479 | MS.gene84703:CDS |
| GATCTCGCTTCCTCTAACAA+CGG | 0.537993 | 3.4:-80842513 | MS.gene84703:CDS |
| GACCGAGGCGAATGAGATTG+AGG | 0.539105 | 3.4:+80834151 | None:intergenic |
| AGTAATTCTAGAAATTCAGC+TGG | 0.539123 | 3.4:-80832643 | MS.gene84703:CDS |
| AGAAGTCAATGGCTAAACTA+AGG | 0.542357 | 3.4:-80838905 | MS.gene84703:CDS |
| ATTCAAGCATCAGATCTGTT+CGG | 0.546638 | 3.4:-80838151 | MS.gene84703:CDS |
| TATCGTATCTTCCAACTCAA+GGG | 0.546729 | 3.4:+80838340 | None:intergenic |
| ATGGATGGTTTGGATCCATC+CGG | 0.547244 | 3.4:-80833274 | MS.gene84703:CDS |
| TTCCTCAATCTCATTCGCCT+CGG | 0.548073 | 3.4:-80834153 | MS.gene84703:CDS |
| TGTACTGGAAGCCCTTGAGT+TGG | 0.550473 | 3.4:-80838351 | MS.gene84703:CDS |
| AACACAGGAGCTACTTGTGC+AGG | 0.550794 | 3.4:-80835431 | MS.gene84703:intron |
| GAGCGGTCTTGGCTTGAACA+AGG | 0.552878 | 3.4:-80833106 | MS.gene84703:CDS |
| GTCGAAGCCAAACCCGAAGA+TGG | 0.553952 | 3.4:+80832616 | None:intergenic |
| AGTACCGCCCAAATATCAGC+AGG | 0.559037 | 3.4:+80842380 | None:intergenic |
| TACGCTGCAATTAGAGGGCA+GGG | 0.559127 | 3.4:-80832736 | MS.gene84703:CDS |
| CCGTTGAAATTCCTAGCAAG+TGG | 0.563702 | 3.4:+80833055 | None:intergenic |
| AGCATCAGATCTGTTCGGAC+TGG | 0.565093 | 3.4:-80838146 | MS.gene84703:CDS |
| CAGGAAAATACGGTCTCTCG+TGG | 0.565236 | 3.4:-80832514 | MS.gene84703:CDS |
| GAAGTTGCTTGCAACCAAAA+CGG | 0.565444 | 3.4:+80833363 | None:intergenic |
| ATCTATGATTGCAGCGAATG+GGG | 0.568014 | 3.4:-80833459 | MS.gene84703:intron |
| GCAAGTACGCTGCAATTAGA+GGG | 0.570104 | 3.4:-80832741 | MS.gene84703:CDS |
| CTTCATTCAAACCACAAGGC+GGG | 0.573322 | 3.4:-80838965 | MS.gene84703:CDS |
| TGACACAGATGAGAAGTCAA+TGG | 0.574831 | 3.4:-80838916 | MS.gene84703:CDS |
| AGCAGGTTGTTCCACTTGCT+AGG | 0.574893 | 3.4:-80833066 | MS.gene84703:CDS |
| TCTTCAAAACCTTGAATAAG+GGG | 0.580909 | 3.4:+80840898 | None:intergenic |
| AAGTAGCTCCTGTGTTCGAA+CGG | 0.584062 | 3.4:+80835438 | None:intergenic |
| AATAATTCCGAAAAGACCAA+TGG | 0.585598 | 3.4:+80840798 | None:intergenic |
| TTCCAAGCAGATGTCCAAGC+GGG | 0.587731 | 3.4:-80839148 | MS.gene84703:CDS |
| GTGGGAAAGAACTTTCTGGC+GGG | 0.588522 | 3.4:+80839863 | None:intergenic |
| GTATTTCTTCAGGAGAGGAA+CGG | 0.591443 | 3.4:-80832877 | MS.gene84703:intron |
| ACATGGCAAACAATGAAGAC+AGG | 0.594497 | 3.4:-80832595 | MS.gene84703:CDS |
| CCACTTGCTAGGAATTTCAA+CGG | 0.597233 | 3.4:-80833055 | MS.gene84703:CDS |
| AAAAGTATTTGAGCAAGTCA+TGG | 0.600122 | 3.4:+80839968 | None:intergenic |
| AGCGGTCTTGGCTTGAACAA+GGG | 0.602451 | 3.4:-80833105 | MS.gene84703:CDS |
| AGGTCTCAAAGGATCCCGCT+TGG | 0.604904 | 3.4:+80839134 | None:intergenic |
| TTTACCCCTACGGCAAACAC+AGG | 0.604921 | 3.4:-80832533 | MS.gene84703:CDS |
| CGTCCCTGCTGATATTTGGG+CGG | 0.611244 | 3.4:-80842384 | MS.gene84703:intron |
| TCATCTTCGGAATGCTCGTG+AGG | 0.613725 | 3.4:-80838880 | MS.gene84703:CDS |
| TAGTTTCTTTATTAGGACCG+AGG | 0.614327 | 3.4:+80834136 | None:intergenic |
| ACATTCATATAAGGTCTCAA+AGG | 0.619065 | 3.4:+80839123 | None:intergenic |
| CCAAGTTACTTACAATGACG+AGG | 0.620005 | 3.4:-80832434 | MS.gene84703:CDS |
| GCTTCCTCTAACAACGGGAA+TGG | 0.622110 | 3.4:-80842507 | MS.gene84703:CDS |
| CTGCAATTAGAGGGCAGGGT+GGG | 0.622483 | 3.4:-80832732 | MS.gene84703:CDS |
| AAAAGCGATAGATCAATGCT+AGG | 0.623744 | 3.4:+80835478 | None:intergenic |
| CAAACCATCCAGTTGACTTG+CGG | 0.625928 | 3.4:+80838303 | None:intergenic |
| TGAACAAGGGCGCAAAATCG+GGG | 0.626860 | 3.4:-80833092 | MS.gene84703:CDS |
| ACCACAAGGCGGGCAATTAG+GGG | 0.627913 | 3.4:-80838955 | MS.gene84703:CDS |
| AGGAAGTTGTATGATATAGG+GGG | 0.634202 | 3.4:+80834171 | None:intergenic |
| ACTGAAGCAGAGGATATGGA+TGG | 0.638835 | 3.4:-80833289 | MS.gene84703:CDS |
| CCTGTCCCCAAATAAAGGGA+CGG | 0.643271 | 3.4:+80833423 | None:intergenic |
| GTGTATGTAACCATAATAAG+CGG | 0.646657 | 3.4:+80833385 | None:intergenic |
| CTCATCAAGTGACTCAGACG+AGG | 0.649535 | 3.4:+80832489 | None:intergenic |
| GAGTTTCAAGTCCAACATAG+GGG | 0.653222 | 3.4:-80832566 | MS.gene84703:CDS |
| GCTTCTCACAATGAGAATGG+AGG | 0.663834 | 3.4:-80841531 | MS.gene84703:CDS |
| GAAACAAGTTGAGAAAGGCA+TGG | 0.668398 | 3.4:-80835557 | MS.gene84703:CDS |
| AACGCCGCAAGTCAACTGGA+TGG | 0.668525 | 3.4:-80838307 | MS.gene84703:intron |
| TGTGGGAAAGAACTTTCTGG+CGG | 0.668683 | 3.4:+80839862 | None:intergenic |
| GATCCTTCATTCAAACCACA+AGG | 0.673960 | 3.4:-80838969 | MS.gene84703:CDS |
| AAACTATGGATGAAGAGACA+AGG | 0.676921 | 3.4:-80832795 | MS.gene84703:CDS |
| TGAATCGGGTAACAACTATG+TGG | 0.678863 | 3.4:-80833023 | MS.gene84703:intron |
| AGGAAAATACGGTCTCTCGT+GGG | 0.680794 | 3.4:-80832513 | MS.gene84703:CDS |
| ACAGAACCAAGTATATCCAA+CGG | 0.692277 | 3.4:+80842427 | None:intergenic |
| CTTCCAAGCAGATGTCCAAG+CGG | 0.707280 | 3.4:-80839149 | MS.gene84703:CDS |
| ATTACTGAAGAAGAAAACGG+AGG | 0.707582 | 3.4:-80832826 | MS.gene84703:CDS |
| CCTTCATTCAAACCACAAGG+CGG | 0.708725 | 3.4:-80838966 | MS.gene84703:CDS |
| GCTGCAATTAGAGGGCAGGG+TGG | 0.716544 | 3.4:-80832733 | MS.gene84703:CDS |
| GTACCGCCCAAATATCAGCA+GGG | 0.734973 | 3.4:+80842381 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 80832429 | 80842552 | 80832429 | ID=MS.gene84703 |
| chr3.4 | mRNA | 80832429 | 80842552 | 80832429 | ID=MS.gene84703.t1;Parent=MS.gene84703 |
| chr3.4 | exon | 80842385 | 80842552 | 80842385 | ID=MS.gene84703.t1.exon1;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80842385 | 80842552 | 80842385 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80841480 | 80841559 | 80841480 | ID=MS.gene84703.t1.exon2;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80841480 | 80841559 | 80841480 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80840772 | 80840930 | 80840772 | ID=MS.gene84703.t1.exon3;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80840772 | 80840930 | 80840772 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80839800 | 80840013 | 80839800 | ID=MS.gene84703.t1.exon4;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80839800 | 80840013 | 80839800 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80839098 | 80839184 | 80839098 | ID=MS.gene84703.t1.exon5;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80839098 | 80839184 | 80839098 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80838861 | 80839000 | 80838861 | ID=MS.gene84703.t1.exon6;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80838861 | 80839000 | 80838861 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80838308 | 80838388 | 80838308 | ID=MS.gene84703.t1.exon7;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80838308 | 80838388 | 80838308 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80838117 | 80838181 | 80838117 | ID=MS.gene84703.t1.exon8;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80838117 | 80838181 | 80838117 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80835432 | 80835604 | 80835432 | ID=MS.gene84703.t1.exon9;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80835432 | 80835604 | 80835432 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80834315 | 80834445 | 80834315 | ID=MS.gene84703.t1.exon10;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80834315 | 80834445 | 80834315 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80834125 | 80834212 | 80834125 | ID=MS.gene84703.t1.exon11;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80834125 | 80834212 | 80834125 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80833254 | 80833467 | 80833254 | ID=MS.gene84703.t1.exon12;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80833254 | 80833467 | 80833254 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80833024 | 80833127 | 80833024 | ID=MS.gene84703.t1.exon13;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80833024 | 80833127 | 80833024 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| chr3.4 | exon | 80832429 | 80832887 | 80832429 | ID=MS.gene84703.t1.exon14;Parent=MS.gene84703.t1 |
| chr3.4 | CDS | 80832429 | 80832887 | 80832429 | ID=cds.MS.gene84703.t1;Parent=MS.gene84703.t1 |
| Gene Sequence |
| Protein sequence |
