AlfalfaGEDB | MS.gene07942

M. sativa cultivar XinJiangDaYe / MS.gene07942

KEGG: -
GO: GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542
PFAM: PF17232.5

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07942.t1	XP_013451912.1	68.3	104	12	4	1	84	11	113	1.80E-24	122.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07942.t1	A0A072UJE8	68.3	104	12	4	1	84	11	113	1.3e-24	122.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049260	MS.gene07942	0.828843	7.18E-55	-1.69E-46
MS.gene050020	MS.gene07942	0.837254	5.79E-57	-1.69E-46
MS.gene050139	MS.gene07942	0.813543	2.43E-51	-1.69E-46
MS.gene050206	MS.gene07942	0.815483	9.03E-52	-1.69E-46
MS.gene050438	MS.gene07942	0.814311	1.64E-51	-1.69E-46
MS.gene050584	MS.gene07942	0.822299	2.55E-53	-1.69E-46
MS.gene050586	MS.gene07942	0.827303	1.69E-54	-1.69E-46
MS.gene050780	MS.gene07942	0.806929	6.48E-50	-1.69E-46
MS.gene050807	MS.gene07942	0.810051	1.40E-50	-1.69E-46
MS.gene050815	MS.gene07942	0.809128	2.20E-50	-1.69E-46
MS.gene051265	MS.gene07942	0.807089	5.99E-50	-1.69E-46
MS.gene051626	MS.gene07942	0.875459	3.03E-68	-1.69E-46
MS.gene051789	MS.gene07942	0.893853	4.27E-75	-1.69E-46
MS.gene051860	MS.gene07942	0.811319	7.43E-51	-1.69E-46
MS.gene052142	MS.gene07942	0.811114	8.23E-51	-1.69E-46
MS.gene052178	MS.gene07942	0.808584	2.88E-50	-1.69E-46
MS.gene052187	MS.gene07942	0.821261	4.44E-53	-1.69E-46
MS.gene052286	MS.gene07942	0.802489	5.48E-49	-1.69E-46
MS.gene052698	MS.gene07942	0.803174	3.95E-49	-1.69E-46
MS.gene052967	MS.gene07942	0.843717	1.18E-58	-1.69E-46
MS.gene053074	MS.gene07942	0.912689	1.46E-83	-1.69E-46
MS.gene053184	MS.gene07942	0.807191	5.70E-50	-1.69E-46
MS.gene053204	MS.gene07942	0.839426	1.60E-57	-1.69E-46
MS.gene053630	MS.gene07942	0.823652	1.23E-53	-1.69E-46
MS.gene053836	MS.gene07942	0.808487	3.02E-50	-1.69E-46
MS.gene054184	MS.gene07942	0.887395	1.48E-72	-1.69E-46
MS.gene054185	MS.gene07942	0.890077	1.36E-73	-1.69E-46
MS.gene054214	MS.gene07942	0.802614	5.16E-49	-1.69E-46
MS.gene05456	MS.gene07942	0.85136	9.34E-61	-1.69E-46
MS.gene054596	MS.gene07942	0.870608	1.28E-66	-1.69E-46
MS.gene055133	MS.gene07942	0.817779	2.76E-52	-1.69E-46
MS.gene055207	MS.gene07942	0.841443	4.74E-58	-1.69E-46
MS.gene055358	MS.gene07942	0.806421	8.29E-50	-1.69E-46
MS.gene055359	MS.gene07942	0.839131	1.90E-57	-1.69E-46
MS.gene055604	MS.gene07942	0.806888	6.61E-50	-1.69E-46
MS.gene056069	MS.gene07942	-0.812094	5.04E-51	-1.69E-46
MS.gene056760	MS.gene07942	0.801425	9.06E-49	-1.69E-46
MS.gene057060	MS.gene07942	0.80446	2.14E-49	-1.69E-46
MS.gene057395	MS.gene07942	0.803091	4.11E-49	-1.69E-46
MS.gene057750	MS.gene07942	0.801754	7.76E-49	-1.69E-46
MS.gene057754	MS.gene07942	0.840228	9.86E-58	-1.69E-46
MS.gene058168	MS.gene07942	0.886453	3.38E-72	-1.69E-46
MS.gene059006	MS.gene07942	0.904681	9.52E-80	-1.69E-46
MS.gene059124	MS.gene07942	0.855901	4.62E-62	-1.69E-46
MS.gene059421	MS.gene07942	0.82809	1.09E-54	-1.69E-46
MS.gene060476	MS.gene07942	0.830806	2.39E-55	-1.69E-46
MS.gene061049	MS.gene07942	0.80408	2.56E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07942.t1	MTR_6g038170	67.361	144	15	5	1	124	11	142	1.04e-54	167
MS.gene07942.t1	MTR_6g038180	79.487	39	8	0	1	39	1	39	2.57e-17	71.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 0 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGATTAAAAAAAAAAAATTC+GGG	-	42963:2743-2762	MS.gene07942:intron	10.0%
!!!	ACTAGTTTTTTTTTTTTTTT+AGG	+	42963:2913-2932	None:intergenic	10.0%
!!!	CTAGTTTTTTTTTTTTTTTA+GGG	+	42963:2912-2931	None:intergenic	10.0%
!!	AATACTAAATGTTAGTATGT+TGG	-	42963:2966-2985	MS.gene07942:intron	20.0%
!!!	TTCAGATTAATTTGTTAATG+AGG	-	42963:3024-3043	MS.gene07942:intron	20.0%
!!!	TTTGTTAATGAGGTTTTTTT+TGG	-	42963:3034-3053	MS.gene07942:intron	20.0%
!	ACAAATTAATCTGAATGACT+TGG	+	42963:3019-3038	None:intergenic	25.0%
!	AGGTTAAACACAAATCATTT+AGG	-	42963:3161-3180	MS.gene07942:intron	25.0%
!!	ATATTCTAGAGAAAGATTGT+TGG	+	42963:3211-3230	None:intergenic	25.0%
!!	GAAAATCCAAAATCGAATTT+TGG	-	42963:3183-3202	MS.gene07942:intron	25.0%
!!	TTATCAGCACTTTGATAATT+AGG	-	42963:3282-3301	MS.gene07942:CDS	25.0%
!!!	AATTTTTGGAGTAAAGAACA+TGG	+	42963:2550-2569	None:intergenic	25.0%
	AAGCAAATGTTACAAATGAG+AGG	-	42963:2500-2519	MS.gene07942:CDS	30.0%
	AGAAATTCTGAATTAATCCC+TGG	+	42963:3419-3438	None:intergenic	30.0%
	AGAAGATCAGATATTAGTAC+TGG	-	42963:3353-3372	MS.gene07942:CDS	30.0%
	CTCATTAACAATTGTACCTT+CGG	+	42963:3143-3162	None:intergenic	30.0%
	GAACTTTCTTCATATGTCTA+GGG	-	42963:2575-2594	MS.gene07942:CDS	30.0%
	GTAACATTTGCTTCTTCATT+TGG	+	42963:2493-2512	None:intergenic	30.0%
	TCATTAACAATTGTACCTTC+GGG	+	42963:3142-3161	None:intergenic	30.0%
	TCTTTACTCCAAAAATTCCT+TGG	-	42963:2553-2572	MS.gene07942:CDS	30.0%
	TGGATGGTAAAGACAAAAAT+TGG	+	42963:2530-2549	None:intergenic	30.0%
!	AGAAAGTTCCAAGGAATTTT+TGG	+	42963:2564-2583	None:intergenic	30.0%
!	ATGTTAGTATGTTGGTGAAT+AGG	-	42963:2974-2993	MS.gene07942:intron	30.0%
!	TTGGAACCAAAATTCGATTT+TGG	+	42963:3192-3211	None:intergenic	30.0%
!	TTGTGACGTTCCAATTTTAT+CGG	-	42963:3111-3130	MS.gene07942:intron	30.0%
	AGAAGATCAGATCTTAGTAC+TGG	-	42963:3317-3336	MS.gene07942:CDS	35.0%
	CATTAACAATTGTACCTTCG+GGG	+	42963:3141-3160	None:intergenic	35.0%
	CGTCACAAAAAAGATTAGCA+TGG	+	42963:3099-3118	None:intergenic	35.0%
	GACATATGAAGAAAGTTCCA+AGG	+	42963:2573-2592	None:intergenic	35.0%
	GGAACTTTCTTCATATGTCT+AGG	-	42963:2574-2593	MS.gene07942:CDS	35.0%
	GTACTAAGATCTGATCTTCT+TGG	+	42963:3317-3336	None:intergenic	35.0%
!	ACTTTGATAATTAGGAGTGG+CGG	-	42963:3290-3309	MS.gene07942:CDS	35.0%
!	AGCACTTTGATAATTAGGAG+TGG	-	42963:3287-3306	MS.gene07942:CDS	35.0%
!	CGAAGGTACAATTGTTAATG+AGG	-	42963:3141-3160	MS.gene07942:intron	35.0%
!	TCAGATATTAGTACTGGAAG+AGG	-	42963:3359-3378	MS.gene07942:CDS	35.0%
!	TTAGTATGTTGGTGAATAGG+TGG	-	42963:2977-2996	MS.gene07942:intron	35.0%
!	TTTGGAGTAAAGAACATGGA+TGG	+	42963:2546-2565	None:intergenic	35.0%
!!	CTGAATGACTTGGTTCTATA+AGG	+	42963:3009-3028	None:intergenic	35.0%
	GAATGTTCAACGAGTGATGA+TGG	-	42963:2652-2671	MS.gene07942:intron	40.0%
	GATGCAGAAGAGAATCTTGA+TGG	-	42963:2610-2629	MS.gene07942:CDS	40.0%
	GGAAGATCAGGTCTTAGTAT+TGG	-	42963:3386-3405	MS.gene07942:CDS	40.0%
	TCAAGATTCTCTTCTGCATC+AGG	+	42963:2610-2629	None:intergenic	40.0%
!	GATATTAGTACTGGAAGAGG+TGG	-	42963:3362-3381	MS.gene07942:CDS	40.0%
!	TCAGATCTTAGTACTGGAAG+AGG	-	42963:3323-3342	MS.gene07942:CDS	40.0%
!	TCAGGTCTTAGTATTGGAAG+AGG	-	42963:3392-3411	MS.gene07942:CDS	40.0%
!	TTAGTATTGGAAGAGGTCCA+GGG	-	42963:3399-3418	MS.gene07942:CDS	40.0%
	ATTAGCATGGCTCCTAGACA+AGG	+	42963:3086-3105	None:intergenic	45.0%
	TCGGGGACATCCGATAAAAT+TGG	+	42963:3124-3143	None:intergenic	45.0%
	TGTGCATGTCATCCTTGTCT+AGG	-	42963:3071-3090	MS.gene07942:intron	45.0%
!	ATTAGTACTGGAAGAGGTGG+AGG	-	42963:3365-3384	MS.gene07942:CDS	45.0%
!	ATTTTATCGGATGTCCCCGA+AGG	-	42963:3124-3143	MS.gene07942:intron	45.0%
!	CTTAGTATTGGAAGAGGTCC+AGG	-	42963:3398-3417	MS.gene07942:CDS	45.0%
!	GATCTTAGTACTGGAAGAGG+TGG	-	42963:3326-3345	MS.gene07942:CDS	45.0%
!!	ATGATTAAAAAAAAAAAATT+CGG	-	42963:2742-2761	MS.gene07942:intron	5.0%
	GGAAGAGGTGGAGGAAGATC+AGG	-	42963:3374-3393	MS.gene07942:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
42963	gene	2475	3442	2475	ID=MS.gene07942
42963	mRNA	2475	3442	2475	ID=MS.gene07942.t1;Parent=MS.gene07942
42963	exon	3233	3442	3233	ID=MS.gene07942.t1.exon1;Parent=MS.gene07942.t1
42963	CDS	3233	3442	3233	ID=cds.MS.gene07942.t1;Parent=MS.gene07942.t1
42963	exon	2475	2639	2475	ID=MS.gene07942.t1.exon2;Parent=MS.gene07942.t1
42963	CDS	2475	2639	2475	ID=cds.MS.gene07942.t1;Parent=MS.gene07942.t1

Gene Sequence

>MS.gene07942

ATGGAAGAAATATCACCAAATGAAGAAGCAAATGTTACAAATGAGAGGAGTGCCAATTTTTGTCTTTACCATCCATGTTCTTTACTCCAAAAATTCCTTGGAACTTTCTTCATATGTCTAGGGTTTCAAATTCCTGATGCAGAAGAGAATCTTGATGGCAAAGTTCTTGCATGTGAAGAATGTTCAACGAGTGATGATGGTCAAAGTTTTGTAAGCTTTTCTCTCTTTTTAATTTTTTTTGACTGAATTCTTTCTTTTTAATTTGAGATGATTAAAAAAAAAAAATTCGGGTATTCATTTGTTTCTTATTTCTTCAATGAGAATCATCTTGTAAGTAAAAAAAATGATTAATTTGACAAAACTAAAATCAATTAAAAAAAAATAAAAAATAAGAGTTGATATTTTTAACACATCTATAATTAGTTTAGTTATTTCCCTAAAAAAAAAAAAAAACTAGTTATTATGACTATTTTGAACAACTAAAACTTGTTAATACTAAATGTTAGTATGTTGGTGAATAGGTGGAATCAACCTTATAGAACCAAGTCATTCAGATTAATTTGTTAATGAGGTTTTTTTTGGACAATTTCTTGATTTGTGCATGTCATCCTTGTCTAGGAGCCATGCTAATCTTTTTTGTGACGTTCCAATTTTATCGGATGTCCCCGAAGGTACAATTGTTAATGAGGTTAAACACAAATCATTTAGGAAAATCCAAAATCGAATTTTGGTTCCAACAATCTTTCTCTAGAATATAAGCAAAGTATTCACACATTCTGATTTGTATTTTCTTTTTCTTACAGCAACTTATCAGCACTTTGATAATTAGGAGTGGCGGACCAAGAAGATCAGATCTTAGTACTGGAAGAGGTGGACGAAGAAGATCAGATATTAGTACTGGAAGAGGTGGAGGAAGATCAGGTCTTAGTATTGGAAGAGGTCCAGGGATTAATTCAGAATTTCTCTAA

Protein sequence

>MS.gene07942.t1

MEEISPNEEANVTNERSANFCLYHPCSLLQKFLGTFFICLGFQIPDAEENLDGKVLACEECSTSDDGQSFQLISTLIIRSGGPRRSDLSTGRGGRRRSDISTGRGGGRSGLSIGRGPGINSEFL