AlfalfaGEDB | MS.gene80557

M. sativa cultivar XinJiangDaYe / MS.gene80557

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0036094 GO:0097159 GO:1901265 GO:1901363
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80557.t1	XP_003609142.1	97.7	132	3	0	6	137	626	757	9.90E-64	252.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80557.t1	Q9SX33	78.8	132	28	0	6	137	632	763	7.2e-55	214.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80557.t1	G7JT17	97.7	132	3	0	6	137	626	757	7.1e-64	252.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene80557	0.806313	8.74E-50	-1.69E-46
MS.gene04918	MS.gene80557	0.829686	4.48E-55	-1.69E-46
MS.gene04920	MS.gene80557	0.810809	9.58E-51	-1.69E-46
MS.gene049254	MS.gene80557	0.812114	4.99E-51	-1.69E-46
MS.gene049283	MS.gene80557	0.883833	3.21E-71	-1.69E-46
MS.gene049368	MS.gene80557	0.800851	1.19E-48	-1.69E-46
MS.gene049419	MS.gene80557	-0.802148	6.44E-49	-1.69E-46
MS.gene049452	MS.gene80557	0.81104	8.54E-51	-1.69E-46
MS.gene049499	MS.gene80557	0.846419	2.20E-59	-1.69E-46
MS.gene049801	MS.gene80557	0.802086	6.63E-49	-1.69E-46
MS.gene049983	MS.gene80557	0.892768	1.17E-74	-1.69E-46
MS.gene04998	MS.gene80557	0.815819	7.60E-52	-1.69E-46
MS.gene050359	MS.gene80557	0.839273	1.75E-57	-1.69E-46
MS.gene050414	MS.gene80557	0.858804	6.40E-63	-1.69E-46
MS.gene050559	MS.gene80557	0.802044	6.76E-49	-1.69E-46
MS.gene050562	MS.gene80557	0.803084	4.13E-49	-1.69E-46
MS.gene050571	MS.gene80557	0.823562	1.30E-53	-1.69E-46
MS.gene050646	MS.gene80557	0.846472	2.13E-59	-1.69E-46
MS.gene050654	MS.gene80557	0.887648	1.19E-72	-1.69E-46
MS.gene050737	MS.gene80557	0.812697	3.72E-51	-1.69E-46
MS.gene050759	MS.gene80557	0.823671	1.22E-53	-1.69E-46
MS.gene050941	MS.gene80557	0.822368	2.46E-53	-1.69E-46
MS.gene050962	MS.gene80557	0.813353	2.67E-51	-1.69E-46
MS.gene051003	MS.gene80557	0.801961	7.03E-49	-1.69E-46
MS.gene051122	MS.gene80557	0.816546	5.23E-52	-1.69E-46
MS.gene051184	MS.gene80557	0.838255	3.21E-57	-1.69E-46
MS.gene051209	MS.gene80557	0.802515	5.41E-49	-1.69E-46
MS.gene051279	MS.gene80557	0.811458	6.93E-51	-1.69E-46
MS.gene051541	MS.gene80557	0.841336	5.06E-58	-1.69E-46
MS.gene051800	MS.gene80557	0.801785	7.64E-49	-1.69E-46
MS.gene051819	MS.gene80557	0.803601	3.22E-49	-1.69E-46
MS.gene051821	MS.gene80557	0.821678	3.55E-53	-1.69E-46
MS.gene051823	MS.gene80557	0.831545	1.57E-55	-1.69E-46
MS.gene051831	MS.gene80557	0.807248	5.55E-50	-1.69E-46
MS.gene051852	MS.gene80557	0.82369	1.21E-53	-1.69E-46
MS.gene052016	MS.gene80557	0.836665	8.19E-57	-1.69E-46
MS.gene052037	MS.gene80557	0.81315	2.96E-51	-1.69E-46
MS.gene052118	MS.gene80557	0.857064	2.11E-62	-1.69E-46
MS.gene052242	MS.gene80557	-0.810647	1.04E-50	-1.69E-46
MS.gene052307	MS.gene80557	0.822351	2.48E-53	-1.69E-46
MS.gene052342	MS.gene80557	0.803048	4.20E-49	-1.69E-46
MS.gene052463	MS.gene80557	0.849787	2.58E-60	-1.69E-46
MS.gene052493	MS.gene80557	0.827831	1.26E-54	-1.69E-46
MS.gene052533	MS.gene80557	0.815987	6.98E-52	-1.69E-46
MS.gene052609	MS.gene80557	0.81986	9.30E-53	-1.69E-46
MS.gene052674	MS.gene80557	0.824181	9.28E-54	-1.69E-46
MS.gene052675	MS.gene80557	0.82602	3.41E-54	-1.69E-46
MS.gene052677	MS.gene80557	0.823705	1.20E-53	-1.69E-46
MS.gene052932	MS.gene80557	0.808562	2.91E-50	-1.69E-46
MS.gene053079	MS.gene80557	0.817759	2.79E-52	-1.69E-46
MS.gene053143	MS.gene80557	0.804045	2.61E-49	-1.69E-46
MS.gene053298	MS.gene80557	0.805467	1.32E-49	-1.69E-46
MS.gene053456	MS.gene80557	0.803358	3.62E-49	-1.69E-46
MS.gene053620	MS.gene80557	0.828263	9.91E-55	-1.69E-46
MS.gene053726	MS.gene80557	0.852646	4.03E-61	-1.69E-46
MS.gene053931	MS.gene80557	0.80287	4.57E-49	-1.69E-46
MS.gene053963	MS.gene80557	0.822562	2.22E-53	-1.69E-46
MS.gene054178	MS.gene80557	0.806724	7.16E-50	-1.69E-46
MS.gene05439	MS.gene80557	0.819681	1.02E-52	-1.69E-46
MS.gene054479	MS.gene80557	0.853148	2.89E-61	-1.69E-46
MS.gene054489	MS.gene80557	0.843398	1.44E-58	-1.69E-46
MS.gene054576	MS.gene80557	0.809703	1.66E-50	-1.69E-46
MS.gene054641	MS.gene80557	0.833988	3.89E-56	-1.69E-46
MS.gene054651	MS.gene80557	0.810389	1.18E-50	-1.69E-46
MS.gene054892	MS.gene80557	0.890846	6.81E-74	-1.69E-46
MS.gene054893	MS.gene80557	0.892826	1.11E-74	-1.69E-46
MS.gene054957	MS.gene80557	0.818477	1.92E-52	-1.69E-46
MS.gene055222	MS.gene80557	0.804808	1.81E-49	-1.69E-46
MS.gene055229	MS.gene80557	0.80481	1.81E-49	-1.69E-46
MS.gene055231	MS.gene80557	0.834579	2.76E-56	-1.69E-46
MS.gene055327	MS.gene80557	0.801894	7.26E-49	-1.69E-46
MS.gene05539	MS.gene80557	0.812489	4.13E-51	-1.69E-46
MS.gene055513	MS.gene80557	0.836275	1.03E-56	-1.69E-46
MS.gene05552	MS.gene80557	0.802635	5.11E-49	-1.69E-46
MS.gene055724	MS.gene80557	0.802875	4.56E-49	-1.69E-46
MS.gene055864	MS.gene80557	0.852301	5.05E-61	-1.69E-46
MS.gene056045	MS.gene80557	0.830812	2.38E-55	-1.69E-46
MS.gene05615	MS.gene80557	0.833537	5.04E-56	-1.69E-46
MS.gene056174	MS.gene80557	0.813124	3.00E-51	-1.69E-46
MS.gene056181	MS.gene80557	0.816129	6.48E-52	-1.69E-46
MS.gene05624	MS.gene80557	0.814728	1.33E-51	-1.69E-46
MS.gene056677	MS.gene80557	0.828032	1.13E-54	-1.69E-46
MS.gene056699	MS.gene80557	0.841601	4.30E-58	-1.69E-46
MS.gene056776	MS.gene80557	0.811946	5.43E-51	-1.69E-46
MS.gene05686	MS.gene80557	0.836372	9.73E-57	-1.69E-46
MS.gene05690	MS.gene80557	0.800992	1.11E-48	-1.69E-46
MS.gene056973	MS.gene80557	0.827333	1.66E-54	-1.69E-46
MS.gene057034	MS.gene80557	0.816796	4.60E-52	-1.69E-46
MS.gene057102	MS.gene80557	0.829032	6.46E-55	-1.69E-46
MS.gene057155	MS.gene80557	0.822418	2.39E-53	-1.69E-46
MS.gene057174	MS.gene80557	0.818079	2.36E-52	-1.69E-46
MS.gene057208	MS.gene80557	0.811511	6.75E-51	-1.69E-46
MS.gene057622	MS.gene80557	0.843793	1.13E-58	-1.69E-46
MS.gene057919	MS.gene80557	0.827061	1.93E-54	-1.69E-46
MS.gene058010	MS.gene80557	0.805844	1.10E-49	-1.69E-46
MS.gene058081	MS.gene80557	0.822031	2.94E-53	-1.69E-46
MS.gene058095	MS.gene80557	0.837318	5.58E-57	-1.69E-46
MS.gene058159	MS.gene80557	0.850707	1.43E-60	-1.69E-46
MS.gene058279	MS.gene80557	0.816143	6.44E-52	-1.69E-46
MS.gene058289	MS.gene80557	0.831327	1.78E-55	-1.69E-46
MS.gene058292	MS.gene80557	0.80113	1.04E-48	-1.69E-46
MS.gene058317	MS.gene80557	0.800809	1.21E-48	-1.69E-46
MS.gene058429	MS.gene80557	0.875865	2.20E-68	-1.69E-46
MS.gene058592	MS.gene80557	0.823492	1.35E-53	-1.69E-46
MS.gene058781	MS.gene80557	0.800839	1.19E-48	-1.69E-46
MS.gene05878	MS.gene80557	0.815921	7.21E-52	-1.69E-46
MS.gene059146	MS.gene80557	0.800092	1.70E-48	-1.69E-46
MS.gene059170	MS.gene80557	0.858617	7.29E-63	-1.69E-46
MS.gene05952	MS.gene80557	0.864738	9.80E-65	-1.69E-46
MS.gene05956	MS.gene80557	0.827018	1.97E-54	-1.69E-46
MS.gene059686	MS.gene80557	0.819469	1.14E-52	-1.69E-46
MS.gene05985	MS.gene80557	-0.838246	3.22E-57	-1.69E-46
MS.gene059901	MS.gene80557	-0.808201	3.48E-50	-1.69E-46
MS.gene059965	MS.gene80557	0.82485	6.46E-54	-1.69E-46
MS.gene060259	MS.gene80557	0.837982	3.77E-57	-1.69E-46
MS.gene060412	MS.gene80557	0.810878	9.26E-51	-1.69E-46
MS.gene060413	MS.gene80557	0.808112	3.63E-50	-1.69E-46
MS.gene060435	MS.gene80557	0.822078	2.87E-53	-1.69E-46
MS.gene060520	MS.gene80557	0.801356	9.36E-49	-1.69E-46
MS.gene060522	MS.gene80557	0.835833	1.33E-56	-1.69E-46
MS.gene06052	MS.gene80557	0.817819	2.71E-52	-1.69E-46
MS.gene060777	MS.gene80557	0.842035	3.31E-58	-1.69E-46
MS.gene060785	MS.gene80557	0.826592	2.49E-54	-1.69E-46
MS.gene060840	MS.gene80557	0.848725	5.10E-60	-1.69E-46
MS.gene060850	MS.gene80557	0.84003	1.11E-57	-1.69E-46
MS.gene060851	MS.gene80557	0.844874	5.77E-59	-1.69E-46
MS.gene060852	MS.gene80557	0.844431	7.59E-59	-1.69E-46
MS.gene060932	MS.gene80557	0.894231	3.00E-75	-1.69E-46
MS.gene060933	MS.gene80557	0.853767	1.92E-61	-1.69E-46
MS.gene060935	MS.gene80557	0.835708	1.43E-56	-1.69E-46
MS.gene060937	MS.gene80557	0.852603	4.14E-61	-1.69E-46
MS.gene061100	MS.gene80557	0.852488	4.47E-61	-1.69E-46
MS.gene061160	MS.gene80557	0.818588	1.81E-52	-1.69E-46
MS.gene061188	MS.gene80557	0.801951	7.07E-49	-1.69E-46
MS.gene06121	MS.gene80557	0.810968	8.85E-51	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 25 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGGAGACAGCAATTAATAT+TGG	0.277027	8.1:-15480768	MS.gene80557:CDS
GAGAAGGATTTGATTCTTCT+TGG	0.277424	8.1:-15481013	MS.gene80557:CDS
GGTATTGACCGGGGATAAAA+TGG	0.293752	8.1:-15480787	MS.gene80557:CDS
GCTAGTTTGTCAATGCATTC+AGG	0.326547	8.1:+15480831	None:intergenic
CACAGGCTGGGATTAAGTTA+TGG	0.366620	8.1:-15480809	MS.gene80557:CDS
TGGAGACAGCAATTAATATT+GGG	0.418327	8.1:-15480767	MS.gene80557:intron
ACAGGCTGGGATTAAGTTAT+GGG	0.432432	8.1:-15480808	MS.gene80557:CDS
AGTGTCATGTTTGAACTACT+TGG	0.440058	8.1:-15481236	MS.gene80557:CDS
ATTAAGTTATGGGTATTGAC+CGG	0.516370	8.1:-15480798	MS.gene80557:CDS
TTGAAGATAAACTACAAGAC+GGG	0.516777	8.1:-15480979	MS.gene80557:CDS
ATTAATGAATATGCTGACTC+TGG	0.524118	8.1:-15481172	MS.gene80557:CDS
AATATGCTGACTCTGGTTTG+AGG	0.527796	8.1:-15481165	MS.gene80557:CDS
ATTGACAAACTAGCACAGGC+TGG	0.548641	8.1:-15480822	MS.gene80557:CDS
TTGACAAACTAGCACAGGCT+GGG	0.579621	8.1:-15480821	MS.gene80557:CDS
GCTTGTAGTTTGCTTAGACA+AGG	0.583824	8.1:-15480652	MS.gene80557:CDS
TTAAGTTATGGGTATTGACC+GGG	0.584387	8.1:-15480797	MS.gene80557:CDS
CATATTGCAAAACATTGAGA+AGG	0.586625	8.1:-15481029	MS.gene80557:CDS
ATGCATTGACAAACTAGCAC+AGG	0.590563	8.1:-15480826	MS.gene80557:CDS
TTCCTCATCGAGTTCACGAT+AGG	0.605431	8.1:+15481129	None:intergenic
CGCCTATCGTGAACTCGATG+AGG	0.615127	8.1:-15481131	MS.gene80557:CDS
GTTGAAGATAAACTACAAGA+CGG	0.620454	8.1:-15480980	MS.gene80557:CDS
TTGTAGTTTATCTTCAACTG+CGG	0.627689	8.1:+15480985	None:intergenic
AGATCAAGAGCAGATTGTAG+AGG	0.657379	8.1:-15481053	MS.gene80557:CDS
TAAGTTATGGGTATTGACCG+GGG	0.665514	8.1:-15480796	MS.gene80557:CDS
TGAAGATAAACTACAAGACG+GGG	0.696798	8.1:-15480978	MS.gene80557:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	TTGAACTACTTGGAAAAAAA+TGG	-	chr8.1:15480638-15480657	MS.gene80557:CDS	25.0%
!!	ATAATAACATGTCACTGATT+AGG	-	chr8.1:15481165-15481184	MS.gene80557:CDS	25.0%
!!!	AATAGTTCTATGTGTTGTTT+AGG	-	chr8.1:15481008-15481027	MS.gene80557:CDS	25.0%
	ACTACTTGGAAAAAAATGGA+AGG	-	chr8.1:15480642-15480661	MS.gene80557:CDS	30.0%
	ATGGAGACAGCAATTAATAT+TGG	-	chr8.1:15481096-15481115	MS.gene80557:CDS	30.0%
	CATATTGCAAAACATTGAGA+AGG	-	chr8.1:15480835-15480854	MS.gene80557:CDS	30.0%
	CTACTTGGAAAAAAATGGAA+GGG	-	chr8.1:15480643-15480662	MS.gene80557:CDS	30.0%
	GTTGAAGATAAACTACAAGA+CGG	-	chr8.1:15480884-15480903	MS.gene80557:intron	30.0%
	TGGAGACAGCAATTAATATT+GGG	-	chr8.1:15481097-15481116	MS.gene80557:CDS	30.0%
	TTGAAGATAAACTACAAGAC+GGG	-	chr8.1:15480885-15480904	MS.gene80557:intron	30.0%
	TTGTAGTTTATCTTCAACTG+CGG	+	chr8.1:15480882-15480901	None:intergenic	30.0%
!	CTGCTTGAAAAATTTGAAAC+CGG	+	chr8.1:15480925-15480944	None:intergenic	30.0%
!!	ATTAAGTTATGGGTATTGAC+CGG	-	chr8.1:15481066-15481085	MS.gene80557:CDS	30.0%
!!	ATTAATGAATATGCTGACTC+TGG	-	chr8.1:15480692-15480711	MS.gene80557:intron	30.0%
	ACGGGGTATGTTATAAATAC+CGG	-	chr8.1:15480903-15480922	MS.gene80557:intron	35.0%
	GAGAAGGATTTGATTCTTCT+TGG	-	chr8.1:15480851-15480870	MS.gene80557:intron	35.0%
	TGAAGATAAACTACAAGACG+GGG	-	chr8.1:15480886-15480905	MS.gene80557:intron	35.0%
!!	TTAAGTTATGGGTATTGACC+GGG	-	chr8.1:15481067-15481086	MS.gene80557:CDS	35.0%
	ACAGGCTGGGATTAAGTTAT+GGG	-	chr8.1:15481056-15481075	MS.gene80557:CDS	40.0%
	AGATCAAGAGCAGATTGTAG+AGG	-	chr8.1:15480811-15480830	MS.gene80557:CDS	40.0%
!	ATGCATTGACAAACTAGCAC+AGG	-	chr8.1:15481038-15481057	MS.gene80557:CDS	40.0%
!	GCTAGTTTGTCAATGCATTC+AGG	+	chr8.1:15481036-15481055	None:intergenic	40.0%
!!	AATATGCTGACTCTGGTTTG+AGG	-	chr8.1:15480699-15480718	MS.gene80557:intron	40.0%
!!	GCTTGTAGTTTGCTTAGACA+AGG	-	chr8.1:15481212-15481231	MS.gene80557:CDS	40.0%
!!	TAAGTTATGGGTATTGACCG+GGG	-	chr8.1:15481068-15481087	MS.gene80557:CDS	40.0%
	ACAAGCAAATCTGCAGTCAC+AGG	+	chr8.1:15481198-15481217	None:intergenic	45.0%
	ATTGACAAACTAGCACAGGC+TGG	-	chr8.1:15481042-15481061	MS.gene80557:CDS	45.0%
	CACAGGCTGGGATTAAGTTA+TGG	-	chr8.1:15481055-15481074	MS.gene80557:CDS	45.0%
	TTCCTCATCGAGTTCACGAT+AGG	+	chr8.1:15480738-15480757	None:intergenic	45.0%
	TTGACAAACTAGCACAGGCT+GGG	-	chr8.1:15481043-15481062	MS.gene80557:CDS	45.0%
!	TGCTGTCTCCATTTTATCCC+CGG	+	chr8.1:15481088-15481107	None:intergenic	45.0%
!!	GGTATTGACCGGGGATAAAA+TGG	-	chr8.1:15481077-15481096	MS.gene80557:CDS	45.0%
	CGCCTATCGTGAACTCGATG+AGG	-	chr8.1:15480733-15480752	MS.gene80557:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	15480630	15481256	15480630	ID=MS.gene80557
chr8.1	mRNA	15480630	15481256	15480630	ID=MS.gene80557.t1;Parent=MS.gene80557
chr8.1	exon	15480979	15481256	15480979	ID=MS.gene80557.t1.exon1;Parent=MS.gene80557.t1
chr8.1	CDS	15480979	15481256	15480979	ID=cds.MS.gene80557.t1;Parent=MS.gene80557.t1
chr8.1	exon	15480768	15480856	15480768	ID=MS.gene80557.t1.exon2;Parent=MS.gene80557.t1
chr8.1	CDS	15480768	15480856	15480768	ID=cds.MS.gene80557.t1;Parent=MS.gene80557.t1
chr8.1	exon	15480630	15480678	15480630	ID=MS.gene80557.t1.exon3;Parent=MS.gene80557.t1
chr8.1	CDS	15480630	15480678	15480630	ID=cds.MS.gene80557.t1;Parent=MS.gene80557.t1

Gene Sequence

>MS.gene80557

TGTCATGTTTGAACTACTTGGAAAAAAATGGAAGGGAGTTTGAAGAGCAGACTAAGTATCACATTAATGAATATGCTGACTCTGGTTTGAGGACTTTGATACTCGCCTATCGTGAACTCGATGAGGAAGAGTACAAGCAATTTAATAAAGAGTTGACAGACGCTAAAAACTTAGTTAGTGCAGATCAAGAGCAGATTGTAGAGGACATATTGCAAAACATTGAGAAGGATTTGATTCTTCTTGGTGCTACCGCAGTTGAAGATAAACTACAAGACGGGGTATGTTATAAATACCGGTTTCAAATTTTTCAAGCAGTTATTTATTTATTATGAATTTTGATATTAGCATTGTTATATTATATTGTAAAAAACTTGTGCTAATAGTTCTATGTGTTGTTTAGGTTCCTGAATGCATTGACAAACTAGCACAGGCTGGGATTAAGTTATGGGTATTGACCGGGGATAAAATGGAGACAGCAATTAATATTGGGTAAGTTTAAAGATTATATACATAATTTTTGATATTGTATTTGCAAATAATAACATGTCACTGATTAGGTTATTTTCCTGTGACTGCAGATTTGCTTGTAGTTTGCTTAGACAAGGAATGAAACAAATTATCATCTAA

Protein sequence

>MS.gene80557.t1

CHVUTTWKKMEGSLKSRLSITLMNMLTLVUGLUYSPIVNSMRKSTSNLIKSUQTLKTULVQIKSRLURTYCKTLRRIUFFLVLPQLKINYKTGFLNALTNUHRLGLSYGYUPGIKWRQQLILDLLVVCLDKEUNKLSS