AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052025


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052025.t1 MTR_2g098660 93.958 331 16 2 1 329 1 329 0.0 613
MS.gene052025.t1 MTR_4g067060 56.283 382 110 8 1 327 1 380 1.64e-133 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052025.t1 AT1G05900 69.130 230 67 1 87 312 141 370 7.95e-118 345
MS.gene052025.t1 AT2G31450 58.108 296 101 4 40 312 68 363 1.08e-114 337
MS.gene052025.t1 AT2G31450 58.108 296 101 4 40 312 66 361 1.38e-114 337
MS.gene052025.t1 AT1G05900 69.006 171 49 1 87 253 141 311 6.24e-82 251

Find 78 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTTCAATCGAGACTTAT+TGG 0.203463 2.2:-4044044 None:intergenic
CATACCAAAAGATAATTTAT+TGG 0.207423 2.2:-4043698 None:intergenic
ACCTTGGTGTGGATTGGTTT+TGG 0.284053 2.2:-4040872 None:intergenic
CAGCGCCTTTCTAGTTTCTT+CGG 0.287332 2.2:-4043645 None:intergenic
GAAATTGAACAGGTAGGATT+TGG 0.294623 2.2:+4043920 MS.gene052025:intron
GGTTCCAATAAATTATCTTT+TGG 0.302688 2.2:+4043694 MS.gene052025:CDS
CACAACAGGAACAAATGAAT+TGG 0.309361 2.2:+4041234 MS.gene052025:CDS
ATTTGCAGCAAGTGCTTCTT+TGG 0.316813 2.2:-4041031 None:intergenic
ACTCAACGTCTTCGTCAAAA+TGG 0.325296 2.2:+4042683 MS.gene052025:CDS
ACCAAACAAACAGAAGTAAA+AGG 0.327365 2.2:-4040802 None:intergenic
GGACAATATGTACTCCTTTA+CGG 0.370840 2.2:+4043945 MS.gene052025:CDS
GAGGAACTACTCTTACTTCC+AGG 0.381417 2.2:+4043044 MS.gene052025:CDS
AGTAGTTCCTCAATTGAGTT+AGG 0.388972 2.2:-4043032 None:intergenic
CATACCAAATGAGCAATCTT+AGG 0.391610 2.2:-4043074 None:intergenic
GAGTAACATGCTCCTTAGTT+TGG 0.393553 2.2:-4041795 None:intergenic
CTACCTACCTTGGTGTGGAT+TGG 0.393734 2.2:-4040878 None:intergenic
AGACTTCAAGTTCATCTTCC+AGG 0.395330 2.2:+4044020 MS.gene052025:CDS
AGCGCCTTTCTAGTTTCTTC+GGG 0.398885 2.2:-4043644 None:intergenic
AGGTCCTAAGATTGCTCATT+TGG 0.400492 2.2:+4043070 MS.gene052025:CDS
TACTACACAGAAGTTTGGTT+TGG 0.413142 2.2:+4041186 MS.gene052025:intron
GTTCTGCCCGTCAGCATTCA+AGG 0.415318 2.2:+4043997 MS.gene052025:CDS
TAGATGAAAGTCCTGCCAAT+TGG 0.428361 2.2:+4041359 MS.gene052025:intron
AAGCACTTGCTGCAAATTCA+AGG 0.437898 2.2:+4041037 MS.gene052025:CDS
CGCTGGAACGGTGGCTTCCG+AGG 0.442006 2.2:+4043663 MS.gene052025:CDS
AAAACAAACCTGCTTTGTGC+CGG 0.443349 2.2:-4043297 None:intergenic
GGTGGCTTCCGAGGGAAGAA+TGG 0.447991 2.2:+4043672 MS.gene052025:CDS
ATTTGTCTCACTAAGTATGA+TGG 0.460497 2.2:+4043002 MS.gene052025:CDS
CACCGCATCTGCAATCGTCT+TGG 0.460837 2.2:+4043260 MS.gene052025:CDS
CTTGGATGGGTTTCGAGACC+CGG 0.461852 2.2:+4043278 MS.gene052025:CDS
AAACAAACCTGCTTTGTGCC+GGG 0.463925 2.2:-4043296 None:intergenic
GCATCTGCAATCGTCTTGGA+TGG 0.472657 2.2:+4043264 MS.gene052025:CDS
CATTAGATTTAGACCTTAGG+AGG 0.472679 2.2:-4041460 None:intergenic
AGATGAAAGTCCTGCCAATT+GGG 0.477356 2.2:+4041360 MS.gene052025:intron
TTTGGTTTGGCTGAGATTGA+AGG 0.478944 2.2:+4041199 MS.gene052025:CDS
ATTGGGAAAACGTGCTTGAA+GGG 0.480580 2.2:+4041377 MS.gene052025:CDS
AATTGGGAAAACGTGCTTGA+AGG 0.485015 2.2:+4041376 MS.gene052025:CDS
TTCGAGACCCGGCACAAAGC+AGG 0.485026 2.2:+4043289 MS.gene052025:CDS
AAAACATGTTGGTCTTGTAA+TGG 0.489092 2.2:-4040845 None:intergenic
ACAACAGGAACAAATGAATT+GGG 0.495856 2.2:+4041235 MS.gene052025:CDS
GGACAGAAGATTTGCTGTCC+TGG 0.497504 2.2:+4041753 MS.gene052025:intron
GGATCTGCTGCATACACAAC+AGG 0.501474 2.2:+4041220 MS.gene052025:CDS
TCTGCACAGCGAGGCCGTAA+AGG 0.510897 2.2:-4043959 None:intergenic
CAATCGAGACTTATTGGACC+TGG 0.515302 2.2:-4044038 None:intergenic
ATTGGAACCCATTCTTCCCT+CGG 0.515483 2.2:-4043680 None:intergenic
TTTGTCTCACTAAGTATGAT+GGG 0.525399 2.2:+4043003 MS.gene052025:CDS
TCGATAAAAGAGAAGATGCC+AGG 0.527820 2.2:-4041771 None:intergenic
GAAGTCTCCTTGAATGCTGA+CGG 0.529421 2.2:-4044004 None:intergenic
CGAAGAAACTAGAAAGGCGC+TGG 0.533567 2.2:+4043646 MS.gene052025:CDS
GTGGCTTCCGAGGGAAGAAT+GGG 0.536497 2.2:+4043673 MS.gene052025:CDS
GATAGACACTACAGGTGATC+GGG 0.536871 2.2:+4041420 MS.gene052025:CDS
TGTTGATATTCATCCTCCTA+AGG 0.549271 2.2:+4041447 MS.gene052025:CDS
ATCCAAGACGATTGCAGATG+CGG 0.553059 2.2:-4043262 None:intergenic
CGATAGACACTACAGGTGAT+CGG 0.557021 2.2:+4041419 MS.gene052025:CDS
CATCTGCAATCGTCTTGGAT+GGG 0.565079 2.2:+4043265 MS.gene052025:CDS
GCTGGAACGGTGGCTTCCGA+GGG 0.566400 2.2:+4043664 MS.gene052025:CDS
AAGTCTCCTTGAATGCTGAC+GGG 0.572187 2.2:-4044003 None:intergenic
CTAGAAAGGCGCTGGAACGG+TGG 0.575424 2.2:+4043654 MS.gene052025:CDS
GCAATCTTAGGACCTACGCC+TGG 0.583177 2.2:-4043062 None:intergenic
TTGAACAGGTAGGATTTGGA+AGG 0.583390 2.2:+4043924 MS.gene052025:intron
AATACCCGAAGAAACTAGAA+AGG 0.587513 2.2:+4043640 MS.gene052025:CDS
AAACTAGAAAGGCGCTGGAA+CGG 0.595096 2.2:+4043651 MS.gene052025:CDS
GAGTATCTACACATATCCCT+TGG 0.595774 2.2:-4043232 None:intergenic
ATTGCATGGAACAATGTCCA+AGG 0.598895 2.2:+4043215 MS.gene052025:CDS
GGACATACCTAACTCAATTG+AGG 0.599951 2.2:+4043025 MS.gene052025:CDS
TAAGTCTCGATTGAACAAGA+AGG 0.604271 2.2:+4044048 MS.gene052025:CDS
ATGTATTCGATAGACACTAC+AGG 0.611197 2.2:+4041412 MS.gene052025:CDS
AGTAGCTACCTACCTTGGTG+TGG 0.611329 2.2:-4040883 None:intergenic
TCAAAATGGTCTTCTTACTG+CGG 0.633029 2.2:+4042697 MS.gene052025:CDS
CAAGACGATTGCAGATGCGG+TGG 0.636787 2.2:-4043259 None:intergenic
CGGCCTCGCTGTGCAGAGTG+TGG 0.639111 2.2:+4043965 MS.gene052025:CDS
TTGAACAAGAAGGCTGAGTG+AGG 0.643237 2.2:+4044058 MS.gene052025:CDS
TGTAGGTTATGATTATTGCA+TGG 0.646193 2.2:+4043201 MS.gene052025:intron
TTGCATGGAACAATGTCCAA+GGG 0.650900 2.2:+4043216 MS.gene052025:CDS
CTACTCTTACTTCCAGGCGT+AGG 0.662681 2.2:+4043050 MS.gene052025:CDS
TTGTCTCACTAAGTATGATG+GGG 0.670790 2.2:+4043004 MS.gene052025:CDS
TCCAAAACCAATCCACACCA+AGG 0.688155 2.2:+4040871 MS.gene052025:CDS
ACACCACACTCTGCACAGCG+AGG 0.705381 2.2:-4043968 None:intergenic
ACTAAGGAGCATGTTACTCG+CGG 0.708659 2.2:+4041799 MS.gene052025:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTATATTTCAATACA+TGG - chr2.2:4041155-4041174 None:intergenic 10.0%
!! ATATATATGTTATAACATAA+TGG + chr2.2:4043412-4043431 MS.gene052025:intron 10.0%
!! TATATATGTTATAACATAAT+GGG + chr2.2:4043413-4043432 MS.gene052025:intron 10.0%
!! TTGAAATCAAAATAAAATAA+TGG - chr2.2:4041665-4041684 None:intergenic 10.0%
!!! AAATTTTTATGCATATAATT+AGG + chr2.2:4041732-4041751 MS.gene052025:intron 10.0%
!!! TTTTTTTTTTGTCAAAAAAA+AGG + chr2.2:4042422-4042441 MS.gene052025:intron 10.0%
!! AATTAAGGAAAGAAAATTTA+AGG - chr2.2:4040954-4040973 None:intergenic 15.0%
!! ATTACTATATAAGATTATCA+AGG + chr2.2:4043372-4043391 MS.gene052025:intron 15.0%
!! TATTTACATTCTCAAATTTA+TGG + chr2.2:4041828-4041847 MS.gene052025:intron 15.0%
!! TCAATTAATAAAACACAAAA+AGG - chr2.2:4042897-4042916 None:intergenic 15.0%
!! TGAAGAGATAAAAAAAATTA+AGG - chr2.2:4040969-4040988 None:intergenic 15.0%
!!! CAATTTTCATACAAAAATTT+GGG + chr2.2:4041107-4041126 MS.gene052025:intron 15.0%
!!! TATAAAGTTAAGTTATTTCT+TGG + chr2.2:4041555-4041574 MS.gene052025:intron 15.0%
!!! TCAATTTTCATACAAAAATT+TGG + chr2.2:4041106-4041125 MS.gene052025:intron 15.0%
!!! TTTAAGATTCATTTTGTTAA+TGG + chr2.2:4043139-4043158 MS.gene052025:intron 15.0%
!! AAATTGCTTAGATTAGAAAA+AGG - chr2.2:4041087-4041106 None:intergenic 20.0%
!! AATCCAAAATATAACCATTT+AGG - chr2.2:4043792-4043811 None:intergenic 20.0%
!! AATTGCTTAGATTAGAAAAA+GGG - chr2.2:4041086-4041105 None:intergenic 20.0%
!! ATGGATATGATAAAAAAACA+TGG - chr2.2:4042260-4042279 None:intergenic 20.0%
!! CATACCAAAAGATAATTTAT+TGG - chr2.2:4043701-4043720 None:intergenic 20.0%
!! CTTAAAACTAATGAAACAAA+CGG - chr2.2:4043125-4043144 None:intergenic 20.0%
!! GTACAAGAAAAAAAAAAAAC+TGG - chr2.2:4043551-4043570 None:intergenic 20.0%
!! TTACAATAATACATCATGAT+GGG + chr2.2:4041597-4041616 MS.gene052025:intron 20.0%
!!! AAATGGTTATATTTTGGATT+TGG + chr2.2:4043792-4043811 MS.gene052025:intron 20.0%
!!! AATATCTATGCTTATACTTT+TGG + chr2.2:4042916-4042935 MS.gene052025:intron 20.0%
!!! ATATCTATGCTTATACTTTT+GGG + chr2.2:4042917-4042936 MS.gene052025:intron 20.0%
!!! ATGATCAATTAATTTGGATT+TGG + chr2.2:4042809-4042828 MS.gene052025:intron 20.0%
!!! TATATTAGCTATTGACTATT+GGG + chr2.2:4041639-4041658 MS.gene052025:intron 20.0%
!!! TTATATTAGCTATTGACTAT+TGG + chr2.2:4041638-4041657 MS.gene052025:intron 20.0%
! AATAATGAGATCTCAAACTT+AGG - chr2.2:4042054-4042073 None:intergenic 25.0%
! AATACCGAAAGCTTAAAAAA+TGG - chr2.2:4042851-4042870 None:intergenic 25.0%
! ACTATATACTACATAGTCAA+AGG - chr2.2:4043740-4043759 None:intergenic 25.0%
! ACTTGAATATGAAATTGAAC+AGG + chr2.2:4043910-4043929 MS.gene052025:intron 25.0%
! ATGTTCAGAAAAAGTTTGAA+TGG - chr2.2:4042279-4042298 None:intergenic 25.0%
! ATTATCAAGGCTTATGTTAT+GGG + chr2.2:4043385-4043404 MS.gene052025:intron 25.0%
! CTGAAACTTATAGAATATTC+TGG + chr2.2:4042331-4042350 MS.gene052025:intron 25.0%
! GGAAAGAAAATTTAAGGAAA+AGG - chr2.2:4040948-4040967 None:intergenic 25.0%
! GTTACAATAATACATCATGA+TGG + chr2.2:4041596-4041615 MS.gene052025:intron 25.0%
! TCTCGTATGATCAATTAATT+TGG + chr2.2:4042803-4042822 MS.gene052025:intron 25.0%
!! AATTTTACTACACAGAAGTT+TGG + chr2.2:4041181-4041200 MS.gene052025:intron 25.0%
!! CTTTTTATGTGATCAATTCT+TGG + chr2.2:4042602-4042621 MS.gene052025:intron 25.0%
!! GGTTCCAATAAATTATCTTT+TGG + chr2.2:4043694-4043713 MS.gene052025:CDS 25.0%
!! TGAGAATTTTGTTCTTTGAT+TGG + chr2.2:4043525-4043544 MS.gene052025:intron 25.0%
!! TGCATGAAATGTATAGTTTT+GGG + chr2.2:4041278-4041297 MS.gene052025:intron 25.0%
!! TTGCATGAAATGTATAGTTT+TGG + chr2.2:4041277-4041296 MS.gene052025:intron 25.0%
!!! ATGGAAGTGTTTTTAGTTTA+GGG + chr2.2:4041314-4041333 MS.gene052025:intron 25.0%
!!! GATTCCATTTTTTAAGCTTT+CGG + chr2.2:4042844-4042863 MS.gene052025:intron 25.0%
!!! TATGGAAGTGTTTTTAGTTT+AGG + chr2.2:4041313-4041332 MS.gene052025:intron 25.0%
!!! TCAAATAAAGTCTCACTTTT+TGG - chr2.2:4041063-4041082 None:intergenic 25.0%
ACAACAGGAACAAATGAATT+GGG + chr2.2:4041235-4041254 MS.gene052025:CDS 30.0%
ACAGATGATAAACACAATTG+GGG - chr2.2:4042582-4042601 None:intergenic 30.0%
ACCAAACAAACAGAAGTAAA+AGG - chr2.2:4040805-4040824 None:intergenic 30.0%
ACCACTAACAAAATGATTTC+AGG - chr2.2:4043179-4043198 None:intergenic 30.0%
AGACAGATGATAAACACAAT+TGG - chr2.2:4042584-4042603 None:intergenic 30.0%
ATTTGTCTCACTAAGTATGA+TGG + chr2.2:4043002-4043021 MS.gene052025:CDS 30.0%
CAGTAAAGTTATCCACAATA+AGG - chr2.2:4041700-4041719 None:intergenic 30.0%
CATGACTATATGAAGTAGTT+TGG + chr2.2:4041952-4041971 MS.gene052025:intron 30.0%
CATTAAAGACATAAGCCAAA+AGG - chr2.2:4041531-4041550 None:intergenic 30.0%
CCTATATTGCATGTTATAGA+AGG + chr2.2:4042489-4042508 MS.gene052025:intron 30.0%
CCTTCTATAACATGCAATAT+AGG - chr2.2:4042492-4042511 None:intergenic 30.0%
CTACATTAAGAAATGCTGAA+CGG - chr2.2:4042101-4042120 None:intergenic 30.0%
CTAGATGAGAATCAACTAAA+TGG - chr2.2:4041979-4041998 None:intergenic 30.0%
GAATATGAAATTGAACAGGT+AGG + chr2.2:4043914-4043933 MS.gene052025:intron 30.0%
GACAGATGATAAACACAATT+GGG - chr2.2:4042583-4042602 None:intergenic 30.0%
GATTATCAAGGCTTATGTTA+TGG + chr2.2:4043384-4043403 MS.gene052025:intron 30.0%
TAGCATTAGATTTAGACCTT+AGG - chr2.2:4041466-4041485 None:intergenic 30.0%
TGTAGGTTATGATTATTGCA+TGG + chr2.2:4043201-4043220 MS.gene052025:intron 30.0%
TTAAGCTTTCGGTATTTCTT+TGG + chr2.2:4042855-4042874 MS.gene052025:intron 30.0%
TTGGACAGTTAAATTGTGTT+TGG + chr2.2:4041574-4041593 MS.gene052025:intron 30.0%
TTGTTGTATATGTAGTAGAG+GGG + chr2.2:4042022-4042041 MS.gene052025:intron 30.0%
TTTGTCTCACTAAGTATGAT+GGG + chr2.2:4043003-4043022 MS.gene052025:CDS 30.0%
! ATTTGGTGAAATCACTGAAA+TGG + chr2.2:4042217-4042236 MS.gene052025:intron 30.0%
! CTTGTTGTATATGTAGTAGA+GGG + chr2.2:4042021-4042040 MS.gene052025:intron 30.0%
! GAAATTAAGCACTAACCTTT+TGG + chr2.2:4041513-4041532 MS.gene052025:intron 30.0%
! GCACCTAAATGGTTATATTT+TGG + chr2.2:4043786-4043805 MS.gene052025:intron 30.0%
! TCCTGAAATCATTTTGTTAG+TGG + chr2.2:4043175-4043194 MS.gene052025:intron 30.0%
! TCCTTTTACTTCTGTTTGTT+TGG + chr2.2:4040801-4040820 MS.gene052025:CDS 30.0%
! TCTTGTTGTATATGTAGTAG+AGG + chr2.2:4042020-4042039 MS.gene052025:intron 30.0%
! TTTAGTTGATTCTCATCTAG+TGG + chr2.2:4041979-4041998 MS.gene052025:intron 30.0%
!! AAAACATGTTGGTCTTGTAA+TGG - chr2.2:4040848-4040867 None:intergenic 30.0%
!! GGGTTTTATATAAGAAAAGC+TGG + chr2.2:4042957-4042976 MS.gene052025:CDS 30.0%
!! GGTTATATTTTGGATTTGGT+GGG + chr2.2:4043796-4043815 MS.gene052025:intron 30.0%
!! TGGTTATATTTTGGATTTGG+TGG + chr2.2:4043795-4043814 MS.gene052025:intron 30.0%
!! TTTGGGTTGATTCTATTCTA+TGG + chr2.2:4041295-4041314 MS.gene052025:intron 30.0%
!!! AAGCAGGTTTGTTTTAAGTT+TGG + chr2.2:4043305-4043324 MS.gene052025:intron 30.0%
!!! GAGTGTGTTTTTTCAAGAAT+AGG + chr2.2:4042656-4042675 MS.gene052025:intron 30.0%
AAAGCTACCAAAGAACATAC+AGG - chr2.2:4042770-4042789 None:intergenic 35.0%
AACCATTTAGGTGCATTTGT+TGG - chr2.2:4043780-4043799 None:intergenic 35.0%
AAGCTACCAAAGAACATACA+GGG - chr2.2:4042769-4042788 None:intergenic 35.0%
AATACCCGAAGAAACTAGAA+AGG + chr2.2:4043640-4043659 MS.gene052025:CDS 35.0%
ACCATTTGCATTCAACTTCA+TGG - chr2.2:4042164-4042183 None:intergenic 35.0%
AGTAGTTCCTCAATTGAGTT+AGG - chr2.2:4043035-4043054 None:intergenic 35.0%
ATGGTTGGACTAAGATTTAG+AGG + chr2.2:4042179-4042198 MS.gene052025:intron 35.0%
ATGTATTCGATAGACACTAC+AGG + chr2.2:4041412-4041431 MS.gene052025:CDS 35.0%
CACAACAGGAACAAATGAAT+TGG + chr2.2:4041234-4041253 MS.gene052025:CDS 35.0%
CATACCAAATGAGCAATCTT+AGG - chr2.2:4043077-4043096 None:intergenic 35.0%
CATTAGATTTAGACCTTAGG+AGG - chr2.2:4041463-4041482 None:intergenic 35.0%
CTTGTTCAATCGAGACTTAT+TGG - chr2.2:4044047-4044066 None:intergenic 35.0%
GAAATTGAACAGGTAGGATT+TGG + chr2.2:4043920-4043939 MS.gene052025:intron 35.0%
GATTTACCCTGTATGTTCTT+TGG + chr2.2:4042760-4042779 MS.gene052025:intron 35.0%
GGACAATATGTACTCCTTTA+CGG + chr2.2:4043945-4043964 MS.gene052025:CDS 35.0%
TAACAGTGTGAACCTTATTG+TGG + chr2.2:4041685-4041704 MS.gene052025:intron 35.0%
TAAGTCTCGATTGAACAAGA+AGG + chr2.2:4044048-4044067 MS.gene052025:CDS 35.0%
TACCAACAAATGCACCTAAA+TGG + chr2.2:4043775-4043794 MS.gene052025:intron 35.0%
TACTACACAGAAGTTTGGTT+TGG + chr2.2:4041186-4041205 MS.gene052025:intron 35.0%
TAGCCAGCAAATATAATGTG+AGG - chr2.2:4043334-4043353 None:intergenic 35.0%
TAGCCTCACATTATATTTGC+TGG + chr2.2:4043328-4043347 MS.gene052025:intron 35.0%
TCAAAATGGTCTTCTTACTG+CGG + chr2.2:4042697-4042716 MS.gene052025:CDS 35.0%
TGAAGTTGAATGCAAATGGT+TGG + chr2.2:4042164-4042183 MS.gene052025:intron 35.0%
TGTTGATATTCATCCTCCTA+AGG + chr2.2:4041447-4041466 MS.gene052025:CDS 35.0%
TTGACGTGTAAGAGATGTTT+GGG + chr2.2:4042302-4042321 MS.gene052025:intron 35.0%
TTGGACTAAGATTTAGAGGA+AGG + chr2.2:4042183-4042202 MS.gene052025:intron 35.0%
TTGTCTCACTAAGTATGATG+GGG + chr2.2:4043004-4043023 MS.gene052025:CDS 35.0%
TTTGACGTGTAAGAGATGTT+TGG + chr2.2:4042301-4042320 MS.gene052025:intron 35.0%
! ACATTATATTTGCTGGCTAG+AGG + chr2.2:4043335-4043354 MS.gene052025:intron 35.0%
! CAATAATACATCATGATGGG+TGG + chr2.2:4041600-4041619 MS.gene052025:intron 35.0%
! CATTATATTTGCTGGCTAGA+GGG + chr2.2:4043336-4043355 MS.gene052025:intron 35.0%
! GGTATTGAAGTTCTCTGATA+TGG - chr2.2:4043626-4043645 None:intergenic 35.0%
! GTTTTTGCGTGTGTTGAATT+GGG - chr2.2:4040996-4041015 None:intergenic 35.0%
! TCTTTTATCGAGCCAAACTA+AGG + chr2.2:4041783-4041802 MS.gene052025:CDS 35.0%
!! ATTTATATTGACTTCGCGTG+TGG + chr2.2:4041485-4041504 MS.gene052025:intron 35.0%
!! CATTTTGTTAGTGGTGATGT+AGG + chr2.2:4043184-4043203 MS.gene052025:intron 35.0%
!! TGTTTTTGCGTGTGTTGAAT+TGG - chr2.2:4040997-4041016 None:intergenic 35.0%
!!! GTTTTGGAGGAAAAACATGT+TGG - chr2.2:4040859-4040878 None:intergenic 35.0%
AAAACAAACCTGCTTTGTGC+CGG - chr2.2:4043300-4043319 None:intergenic 40.0%
AAGTTAGTAGCTACCTACCT+TGG - chr2.2:4040891-4040910 None:intergenic 40.0%
AAGTTCTCTGATATGGCATG+GGG - chr2.2:4043619-4043638 None:intergenic 40.0%
AATTGGGAAAACGTGCTTGA+AGG + chr2.2:4041376-4041395 MS.gene052025:CDS 40.0%
ACTCAACGTCTTCGTCAAAA+TGG + chr2.2:4042683-4042702 MS.gene052025:CDS 40.0%
AGATGAAAGTCCTGCCAATT+GGG + chr2.2:4041360-4041379 MS.gene052025:intron 40.0%
AGGTCCTAAGATTGCTCATT+TGG + chr2.2:4043070-4043089 MS.gene052025:CDS 40.0%
ATTGCATGGAACAATGTCCA+AGG + chr2.2:4043215-4043234 MS.gene052025:CDS 40.0%
ATTGGGAAAACGTGCTTGAA+GGG + chr2.2:4041377-4041396 MS.gene052025:CDS 40.0%
ATTTGCAGCAAGTGCTTCTT+TGG - chr2.2:4041034-4041053 None:intergenic 40.0%
CATCTAGTGGAAAGATGCTT+TGG + chr2.2:4041992-4042011 MS.gene052025:intron 40.0%
GAAGTTCTCTGATATGGCAT+GGG - chr2.2:4043620-4043639 None:intergenic 40.0%
GAGTAACATGCTCCTTAGTT+TGG - chr2.2:4041798-4041817 None:intergenic 40.0%
GAGTATCTACACATATCCCT+TGG - chr2.2:4043235-4043254 None:intergenic 40.0%
GATTGCTCATTTGGTATGTG+CGG + chr2.2:4043079-4043098 MS.gene052025:intron 40.0%
GCATTCAACTTCATGGCAAT+AGG - chr2.2:4042157-4042176 None:intergenic 40.0%
GCCATGAAGTTGAATGCAAA+TGG + chr2.2:4042160-4042179 MS.gene052025:intron 40.0%
GGACATACCTAACTCAATTG+AGG + chr2.2:4043025-4043044 MS.gene052025:CDS 40.0%
TAGATGAAAGTCCTGCCAAT+TGG + chr2.2:4041359-4041378 MS.gene052025:intron 40.0%
TCGATAAAAGAGAAGATGCC+AGG - chr2.2:4041774-4041793 None:intergenic 40.0%
TGAAGTTCTCTGATATGGCA+TGG - chr2.2:4043621-4043640 None:intergenic 40.0%
TTGAACAGGTAGGATTTGGA+AGG + chr2.2:4043924-4043943 MS.gene052025:intron 40.0%
TTGCATGGAACAATGTCCAA+GGG + chr2.2:4043216-4043235 MS.gene052025:CDS 40.0%
! AAGCACTTGCTGCAAATTCA+AGG + chr2.2:4041037-4041056 MS.gene052025:CDS 40.0%
! AAGTCTTGATTTTGCTCCAG+AGG + chr2.2:4042123-4042142 MS.gene052025:intron 40.0%
! AGACTTCAAGTTCATCTTCC+AGG + chr2.2:4044020-4044039 MS.gene052025:CDS 40.0%
! CTTTTGGGCATTCTTTTCTC+AGG + chr2.2:4042932-4042951 MS.gene052025:intron 40.0%
! TTCAAGCACGTTTTCCCAAT+TGG - chr2.2:4041377-4041396 None:intergenic 40.0%
!! CATGATGGGTGGATTGTTAT+TGG + chr2.2:4041611-4041630 MS.gene052025:intron 40.0%
!! TTTGGTTTGGCTGAGATTGA+AGG + chr2.2:4041199-4041218 MS.gene052025:CDS 40.0%
!!! GGAAGGTTTTGAGCATGATT+TGG + chr2.2:4042200-4042219 MS.gene052025:intron 40.0%
AAACAAACCTGCTTTGTGCC+GGG - chr2.2:4043299-4043318 None:intergenic 45.0%
AAACCAATCCACACCAAGGT+AGG + chr2.2:4040875-4040894 MS.gene052025:intron 45.0%
AAGTCTCCTTGAATGCTGAC+GGG - chr2.2:4044006-4044025 None:intergenic 45.0%
AGCAGCCATTATGTGCACTT+TGG + chr2.2:4042555-4042574 MS.gene052025:intron 45.0%
ATCCAAGACGATTGCAGATG+CGG - chr2.2:4043265-4043284 None:intergenic 45.0%
ATTGGAACCCATTCTTCCCT+CGG - chr2.2:4043683-4043702 None:intergenic 45.0%
CAATCGAGACTTATTGGACC+TGG - chr2.2:4044041-4044060 None:intergenic 45.0%
CATCTGCAATCGTCTTGGAT+GGG + chr2.2:4043265-4043284 MS.gene052025:CDS 45.0%
CGATAGACACTACAGGTGAT+CGG + chr2.2:4041419-4041438 MS.gene052025:CDS 45.0%
GAAGTCTCCTTGAATGCTGA+CGG - chr2.2:4044007-4044026 None:intergenic 45.0%
GAGGAACTACTCTTACTTCC+AGG + chr2.2:4043044-4043063 MS.gene052025:CDS 45.0%
GATAGACACTACAGGTGATC+GGG + chr2.2:4041420-4041439 MS.gene052025:CDS 45.0%
GCAATAGGTTTCTCATCCTC+TGG - chr2.2:4042142-4042161 None:intergenic 45.0%
TCCAAAACCAATCCACACCA+AGG + chr2.2:4040871-4040890 MS.gene052025:CDS 45.0%
TTGCGCTTTCTTTCTGTGTC+AGG - chr2.2:4042448-4042467 None:intergenic 45.0%
! ACTAAGGAGCATGTTACTCG+CGG + chr2.2:4041799-4041818 MS.gene052025:CDS 45.0%
! GGGCATTCTTTTCTCAGGTT+GGG + chr2.2:4042937-4042956 MS.gene052025:intron 45.0%
! TGGGCATTCTTTTCTCAGGT+TGG + chr2.2:4042936-4042955 MS.gene052025:intron 45.0%
!! AAACTAGAAAGGCGCTGGAA+CGG + chr2.2:4043651-4043670 MS.gene052025:CDS 45.0%
!! AGCGCCTTTCTAGTTTCTTC+GGG - chr2.2:4043647-4043666 None:intergenic 45.0%
!! CAGCGCCTTTCTAGTTTCTT+CGG - chr2.2:4043648-4043667 None:intergenic 45.0%
!! TTCTCAGTGCTGACAAACAC+CGG - chr2.2:4043511-4043530 None:intergenic 45.0%
!!! ACCTTGGTGTGGATTGGTTT+TGG - chr2.2:4040875-4040894 None:intergenic 45.0%
!!! TTGGTGTGGATTGGTTTTGG+AGG - chr2.2:4040872-4040891 None:intergenic 45.0%
AGTAGCTACCTACCTTGGTG+TGG - chr2.2:4040886-4040905 None:intergenic 50.0%
CTACTCTTACTTCCAGGCGT+AGG + chr2.2:4043050-4043069 MS.gene052025:CDS 50.0%
GCATCTGCAATCGTCTTGGA+TGG + chr2.2:4043264-4043283 MS.gene052025:CDS 50.0%
GGATCTGCTGCATACACAAC+AGG + chr2.2:4041220-4041239 MS.gene052025:CDS 50.0%
GGGGTCCAAAGTGCACATAA+TGG - chr2.2:4042563-4042582 None:intergenic 50.0%
TCTGATATGGCATGGGGAAG+AGG - chr2.2:4043613-4043632 None:intergenic 50.0%
! AGCACGTTTTCCCAATTGGC+AGG - chr2.2:4041373-4041392 None:intergenic 50.0%
! CGAAGAAACTAGAAAGGCGC+TGG + chr2.2:4043646-4043665 MS.gene052025:CDS 50.0%
! CTACCTACCTTGGTGTGGAT+TGG - chr2.2:4040881-4040900 None:intergenic 50.0%
!! GGACAGAAGATTTGCTGTCC+TGG + chr2.2:4041753-4041772 MS.gene052025:intron 50.0%
CAAGACGATTGCAGATGCGG+TGG - chr2.2:4043262-4043281 None:intergenic 55.0%
CACCGCATCTGCAATCGTCT+TGG + chr2.2:4043260-4043279 MS.gene052025:CDS 55.0%
GCAATCTTAGGACCTACGCC+TGG - chr2.2:4043065-4043084 None:intergenic 55.0%
GTGGCTTCCGAGGGAAGAAT+GGG + chr2.2:4043673-4043692 MS.gene052025:CDS 55.0%
GTTCTGCCCGTCAGCATTCA+AGG + chr2.2:4043997-4044016 MS.gene052025:CDS 55.0%
! CTTGGATGGGTTTCGAGACC+CGG + chr2.2:4043278-4043297 MS.gene052025:CDS 55.0%
!! TGCTTGACTTGCGAGTCAGC+CGG + chr2.2:4043489-4043508 MS.gene052025:intron 55.0%
ACACCACACTCTGCACAGCG+AGG - chr2.2:4043971-4043990 None:intergenic 60.0%
GGTGGCTTCCGAGGGAAGAA+TGG + chr2.2:4043672-4043691 MS.gene052025:CDS 60.0%
TCTGCACAGCGAGGCCGTAA+AGG - chr2.2:4043962-4043981 None:intergenic 60.0%
TTCGAGACCCGGCACAAAGC+AGG + chr2.2:4043289-4043308 MS.gene052025:CDS 60.0%
!! CTAGAAAGGCGCTGGAACGG+TGG + chr2.2:4043654-4043673 MS.gene052025:CDS 60.0%
GCTGGAACGGTGGCTTCCGA+GGG + chr2.2:4043664-4043683 MS.gene052025:CDS 65.0%
CGCTGGAACGGTGGCTTCCG+AGG + chr2.2:4043663-4043682 MS.gene052025:CDS 70.0%
CGGCCTCGCTGTGCAGAGTG+TGG + chr2.2:4043965-4043984 MS.gene052025:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 4040790 4044078 4040790 ID=MS.gene052025
chr2.2 mRNA 4040790 4044078 4040790 ID=MS.gene052025.t1;Parent=MS.gene052025
chr2.2 exon 4040790 4040892 4040790 ID=MS.gene052025.t1.exon1;Parent=MS.gene052025.t1
chr2.2 CDS 4040790 4040892 4040790 ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1
chr2.2 exon 4040990 4041066 4040990 ID=MS.gene052025.t1.exon2;Parent=MS.gene052025.t1
chr2.2 CDS 4040990 4041066 4040990 ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1
chr2.2 exon 4041196 4041265 4041196 ID=MS.gene052025.t1.exon3;Parent=MS.gene052025.t1
chr2.2 CDS 4041196 4041265 4041196 ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1
chr2.2 exon 4041362 4041468 4041362 ID=MS.gene052025.t1.exon4;Parent=MS.gene052025.t1
chr2.2 CDS 4041362 4041468 4041362 ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1
chr2.2 exon 4041754 4041820 4041754 ID=MS.gene052025.t1.exon5;Parent=MS.gene052025.t1
chr2.2 CDS 4041754 4041820 4041754 ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1
chr2.2 exon 4042678 4042769 4042678 ID=MS.gene052025.t1.exon6;Parent=MS.gene052025.t1
chr2.2 CDS 4042678 4042769 4042678 ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1
chr2.2 exon 4042954 4043091 4042954 ID=MS.gene052025.t1.exon7;Parent=MS.gene052025.t1
chr2.2 CDS 4042954 4043091 4042954 ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1
chr2.2 exon 4043206 4043310 4043206 ID=MS.gene052025.t1.exon8;Parent=MS.gene052025.t1
chr2.2 CDS 4043206 4043310 4043206 ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1
chr2.2 exon 4043632 4043715 4043632 ID=MS.gene052025.t1.exon9;Parent=MS.gene052025.t1
chr2.2 CDS 4043632 4043715 4043632 ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1
chr2.2 exon 4043932 4044078 4043932 ID=MS.gene052025.t1.exon10;Parent=MS.gene052025.t1
chr2.2 CDS 4043932 4044078 4043932 ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1
Gene Sequence

>MS.gene052025

ATGTTTGTGTTTCCTTTTACTTCTGTTTGTTTGGTGCGAATCTCTGTCTTCTCTTCCATTACAAGACCAACATGTTTTTCCTCCAAAACCAATCCACACCAAGGTAGGTAGCTACTAACTTACTTCTTCACAATACATTCTTATTATTTTCAATTCCTTTTCCTTAAATTTTCTTTCCTTAATTTTTTTTATCTCTTCAGTGTCCCAATTCAACACACGCAAAAACACTACACAACTTCAACCAAAGAAGCACTTGCTGCAAATTCAAGGCCAAAAAGTGAGACTTTATTTGACCCTTTTTCTAATCTAAGCAATTTCAATTTTCATACAAAAATTTGGGAATTCTTCAAATGTTCACATTTCCATGTATTGAAATATAATTTATGTTAGTAATTTTACTACACAGAAGTTTGGTTTGGCTGAGATTGAAGGATCTGCTGCATACACAACAGGAACAAATGAATTGGGTCAAACTAGTAAGTGCTTCTTGCATGAAATGTATAGTTTTGGGTTGATTCTATTCTATGGAAGTGTTTTTAGTTTAGGGAGCTTATAGTGCTTTATTTATGTAGATGAAAGTCCTGCCAATTGGGAAAACGTGCTTGAAGGGATTCGCAAAATGATGTATTCGATAGACACTACAGGTGATCGGGAAGATGTTGATATTCATCCTCCTAAGGTCTAAATCTAATGCTATTTATATTGACTTCGCGTGTGGTGAAAGAAATTAAGCACTAACCTTTTGGCTTATGTCTTTAATGTGATTATAAAGTTAAGTTATTTCTTGGACAGTTAAATTGTGTTTGGTTACAATAATACATCATGATGGGTGGATTGTTATTGGAAATTTATATTAGCTATTGACTATTGGGCCATTATTTTATTTTGATTTCAATAACAGTGTGAACCTTATTGTGGATAACTTTACTGTCATAATAAACTAAATTTTTATGCATATAATTAGGACAGAAGATTTGCTGTCCTGGCATCTTCTCTTTTATCGAGCCAAACTAAGGAGCATGTTACTCGCGGTAAGCATATTTACATTCTCAAATTTATGGTCATGAAAAACATGTCGAGATTTGTTTTCTTTTGTTCGTAGTTTGAGAAGCTTCATTCTAAGATTGTAATGTTATTTTTCGATAATATTTATGATTCATGACATGACTATATGAAGTAGTTTGGTCCATTTAGTTGATTCTCATCTAGTGGAAAGATGCTTTGGTTCGTTCTTGTTGTATATGTAGTAGAGGGGAGCATACCTAAGTTTGAGATCTCATTATTTGACGTTTACAATTTGATAAAGCACCGTTCAGCATTTCTTAATGTAGCTAAGTCTTGATTTTGCTCCAGAGGATGAGAAACCTATTGCCATGAAGTTGAATGCAAATGGTTGGACTAAGATTTAGAGGAAGGTTTTGAGCATGATTTGGTGAAATCACTGAAATGGAAACAGATTTAGCATTTCCATGTTTTTTTATCATATCCATTCAAACTTTTTCTGAACATTTTTTGACGTGTAAGAGATGTTTGGGAAGCTTCTGAAACTTATAGAATATTCTGGAATACACACAGAAAAATACAACATCACATCAGAAATAAAAATTAGTATGTATGTGTTTTTTTTTTTTTTTTTTTTTTTGTCAAAAAAAAGGCCTGACACAGAAAGAAAGCGCAAAAAAAAAAAAATTAGATACTTCCTATATTGCATGTTATAGAAGGCTGAACTTCAAAAATCAATGAAGTGCGAATCTAACTAAATTTGAGCAGCCATTATGTGCACTTTGGACCCCAATTGTGTTTATCATCTGTCTTTTTATGTGATCAATTCTTGGTAGTTTCTCGTACAAATTTAGTCATATTTAAGAGTGTGTTTTTTCAAGAATAGGAGCAACTCAACGTCTTCGTCAAAATGGTCTTCTTACTGCGGATGCACTCAACAAAGCTGATGAAGAAACTATCAAAAAACTGATTTACCCTGTATGTTCTTTGGTAGCTTTTGAAAACTGTGCTTCTCGTATGATCAATTAATTTGGATTTGGTAGAAAATTAAAGATTCCATTTTTTAAGCTTTCGGTATTTCTTTGGTCAAATTATTTTATGTCCTTTTTGTGTTTTATTAATTGAATATCTATGCTTATACTTTTGGGCATTCTTTTCTCAGGTTGGGTTTTATATAAGAAAAGCTGGTAACTTGAAGAAAATTGCTGATATTTGTCTCACTAAGTATGATGGGGACATACCTAACTCAATTGAGGAACTACTCTTACTTCCAGGCGTAGGTCCTAAGATTGCTCATTTGGTATGTGCGGTTTTCTTCTCGTATTTCAAACCGTTTGTTTCATTAGTTTTAAGATTCATTTTGTTAATGGTATTAGTTTTATTTCCTGAAATCATTTTGTTAGTGGTGATGTAGGTTATGATTATTGCATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATCTGCAATCGTCTTGGATGGGTTTCGAGACCCGGCACAAAGCAGGTTTGTTTTAAGTTTGGTAGCCTCACATTATATTTGCTGGCTAGAGGGAAAAATTATGCAAATTACTATATAAGATTATCAAGGCTTATGTTATGGGATCAATATATATGTTATAACATAATGGGAATGAAATTTTATTATCAGAACGTATCTTTTATTTATCATGATGTCTGAAATTTGCTTGACTTGCGAGTCAGCCGGTGTTTGTCAGCACTGAGAATTTTGTTCTTTGATTGGCCAGTTTTTTTTTTTTCTTGTACTAACTTGTTTCTAAGTGTCACAAATTCAAAGTTAATAATCCTCTTCCCCATGCCATATCAGAGAACTTCAATACCCGAAGAAACTAGAAAGGCGCTGGAACGGTGGCTTCCGAGGGAAGAATGGGTTCCAATAAATTATCTTTTGGTATGCATAGCTCATTCACTTCCTTTGACTATGTAGTATATAGTATAGACTATAGTATATACCAACAAATGCACCTAAATGGTTATATTTTGGATTTGGTGGGTTGTATTATTACTGCATTGCTAAAAACATTTTTGAGCTTCTTATATCATCTATCTTACAACATTGTTTGCTTATATGTAAAGCATCATCTGACTTGAATATGAAATTGAACAGGTAGGATTTGGAAGGACAATATGTACTCCTTTACGGCCTCGCTGTGCAGAGTGTGGTGTAAGTAAGTTCTGCCCGTCAGCATTCAAGGAGACTTCAAGTTCATCTTCCAGGTCCAATAAGTCTCGATTGAACAAGAAGGCTGAGTGA

Protein sequence

>MS.gene052025.t1

MFVFPFTSVCLVRISVFSSITRPTCFSSKTNPHQVSQFNTRKNTTQLQPKKHLLQIQGQKKFGLAEIEGSAAYTTGTNELGQTNESPANWENVLEGIRKMMYSIDTTGDREDVDIHPPKDRRFAVLASSLLSSQTKEHVTRGATQRLRQNGLLTADALNKADEETIKKLIYPVGFYIRKAGNLKKIADICLTKYDGDIPNSIEELLLLPGVGPKIAHLVMIIAWNNVQGICVDTHVHRICNRLGWVSRPGTKQRTSIPEETRKALERWLPREEWVPINYLLVGFGRTICTPLRPRCAECGVSKFCPSAFKETSSSSSRSNKSRLNKKAE