Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052025.t1 | XP_003597497.1 | 82.8 | 331 | 53 | 2 | 1 | 329 | 1 | 329 | 4.20E-145 | 524.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052025.t1 | B9DFZ0 | 67.8 | 245 | 75 | 1 | 87 | 327 | 141 | 385 | 2.9e-94 | 346.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052025.t1 | G7IHS6 | 82.8 | 331 | 53 | 2 | 1 | 329 | 1 | 329 | 3.1e-145 | 524.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050301 | MS.gene052025 | 0.802714 | 4.92E-49 | -1.69E-46 |
MS.gene051860 | MS.gene052025 | 0.807592 | 4.69E-50 | -1.69E-46 |
MS.gene052025 | MS.gene053209 | 0.81777 | 2.78E-52 | -1.69E-46 |
MS.gene052025 | MS.gene054473 | 0.818276 | 2.13E-52 | -1.69E-46 |
MS.gene052025 | MS.gene068612 | 0.801299 | 9.61E-49 | -1.69E-46 |
MS.gene052025 | MS.gene069680 | 0.801325 | 9.50E-49 | -1.69E-46 |
MS.gene052025 | MS.gene069681 | 0.810275 | 1.25E-50 | -1.69E-46 |
MS.gene052025 | MS.gene072415 | 0.80735 | 5.28E-50 | -1.69E-46 |
MS.gene052025 | MS.gene25859 | 0.803673 | 3.12E-49 | -1.69E-46 |
MS.gene052025 | MS.gene26990 | 0.811831 | 5.75E-51 | -1.69E-46 |
MS.gene052025 | MS.gene37213 | 0.817605 | 3.02E-52 | -1.69E-46 |
MS.gene052025 | MS.gene40511 | 0.806037 | 9.99E-50 | -1.69E-46 |
MS.gene052025 | MS.gene43917 | 0.826508 | 2.61E-54 | -1.69E-46 |
MS.gene052025 | MS.gene43919 | 0.813023 | 3.16E-51 | -1.69E-46 |
MS.gene052025 | MS.gene45108 | 0.817297 | 3.55E-52 | -1.69E-46 |
MS.gene052025 | MS.gene52353 | 0.8021 | 6.58E-49 | -1.69E-46 |
MS.gene052025 | MS.gene52399 | 0.806215 | 9.17E-50 | -1.69E-46 |
MS.gene052025 | MS.gene53001 | 0.813557 | 2.41E-51 | -1.69E-46 |
MS.gene052025 | MS.gene54700 | 0.80254 | 5.34E-49 | -1.69E-46 |
MS.gene052025 | MS.gene57565 | 0.801204 | 1.01E-48 | -1.69E-46 |
MS.gene052025 | MS.gene58537 | 0.82854 | 8.49E-55 | -1.69E-46 |
MS.gene052025 | MS.gene59730 | 0.807583 | 4.71E-50 | -1.69E-46 |
MS.gene052025 | MS.gene62154 | 0.815376 | 9.55E-52 | -1.69E-46 |
MS.gene052025 | MS.gene62645 | 0.809328 | 2.00E-50 | -1.69E-46 |
MS.gene052025 | MS.gene65665 | 0.809936 | 1.48E-50 | -1.69E-46 |
MS.gene052025 | MS.gene66884 | 0.81301 | 3.18E-51 | -1.69E-46 |
MS.gene052025 | MS.gene68168 | 0.833476 | 5.22E-56 | -1.69E-46 |
MS.gene052025 | MS.gene68315 | 0.802199 | 6.28E-49 | -1.69E-46 |
MS.gene052025 | MS.gene68907 | 0.818661 | 1.74E-52 | -1.69E-46 |
MS.gene052025 | MS.gene78321 | 0.802511 | 5.42E-49 | -1.69E-46 |
MS.gene052025 | MS.gene78464 | 0.804586 | 2.01E-49 | -1.69E-46 |
MS.gene052025 | MS.gene85898 | 0.811693 | 6.16E-51 | -1.69E-46 |
MS.gene052025 | MS.gene93892 | 0.808447 | 3.08E-50 | -1.69E-46 |
MS.gene052025 | MS.gene95062 | 0.81186 | 5.67E-51 | -1.69E-46 |
MS.gene052025 | MS.gene95864 | 0.809231 | 2.10E-50 | -1.69E-46 |
MS.gene052025 | MS.gene96276 | 0.809758 | 1.62E-50 | -1.69E-46 |
MS.gene052025 | MS.gene98710 | 0.857082 | 2.08E-62 | -1.69E-46 |
MS.gene052025 | MS.gene99375 | 0.824503 | 7.79E-54 | -1.69E-46 |
MS.gene052025 | MS.gene99551 | 0.833768 | 4.41E-56 | -1.69E-46 |
MS.gene052025 | MS.gene99622 | 0.807053 | 6.10E-50 | -1.69E-46 |
MS.gene052025 | MS.gene99806 | 0.805511 | 1.29E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052025.t1 | MTR_2g098660 | 93.958 | 331 | 16 | 2 | 1 | 329 | 1 | 329 | 0.0 | 613 |
MS.gene052025.t1 | MTR_4g067060 | 56.283 | 382 | 110 | 8 | 1 | 327 | 1 | 380 | 1.64e-133 | 385 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052025.t1 | AT1G05900 | 69.130 | 230 | 67 | 1 | 87 | 312 | 141 | 370 | 7.95e-118 | 345 |
MS.gene052025.t1 | AT2G31450 | 58.108 | 296 | 101 | 4 | 40 | 312 | 68 | 363 | 1.08e-114 | 337 |
MS.gene052025.t1 | AT2G31450 | 58.108 | 296 | 101 | 4 | 40 | 312 | 66 | 361 | 1.38e-114 | 337 |
MS.gene052025.t1 | AT1G05900 | 69.006 | 171 | 49 | 1 | 87 | 253 | 141 | 311 | 6.24e-82 | 251 |
Find 78 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGTTCAATCGAGACTTAT+TGG | 0.203463 | 2.2:-4044044 | None:intergenic |
CATACCAAAAGATAATTTAT+TGG | 0.207423 | 2.2:-4043698 | None:intergenic |
ACCTTGGTGTGGATTGGTTT+TGG | 0.284053 | 2.2:-4040872 | None:intergenic |
CAGCGCCTTTCTAGTTTCTT+CGG | 0.287332 | 2.2:-4043645 | None:intergenic |
GAAATTGAACAGGTAGGATT+TGG | 0.294623 | 2.2:+4043920 | MS.gene052025:intron |
GGTTCCAATAAATTATCTTT+TGG | 0.302688 | 2.2:+4043694 | MS.gene052025:CDS |
CACAACAGGAACAAATGAAT+TGG | 0.309361 | 2.2:+4041234 | MS.gene052025:CDS |
ATTTGCAGCAAGTGCTTCTT+TGG | 0.316813 | 2.2:-4041031 | None:intergenic |
ACTCAACGTCTTCGTCAAAA+TGG | 0.325296 | 2.2:+4042683 | MS.gene052025:CDS |
ACCAAACAAACAGAAGTAAA+AGG | 0.327365 | 2.2:-4040802 | None:intergenic |
GGACAATATGTACTCCTTTA+CGG | 0.370840 | 2.2:+4043945 | MS.gene052025:CDS |
GAGGAACTACTCTTACTTCC+AGG | 0.381417 | 2.2:+4043044 | MS.gene052025:CDS |
AGTAGTTCCTCAATTGAGTT+AGG | 0.388972 | 2.2:-4043032 | None:intergenic |
CATACCAAATGAGCAATCTT+AGG | 0.391610 | 2.2:-4043074 | None:intergenic |
GAGTAACATGCTCCTTAGTT+TGG | 0.393553 | 2.2:-4041795 | None:intergenic |
CTACCTACCTTGGTGTGGAT+TGG | 0.393734 | 2.2:-4040878 | None:intergenic |
AGACTTCAAGTTCATCTTCC+AGG | 0.395330 | 2.2:+4044020 | MS.gene052025:CDS |
AGCGCCTTTCTAGTTTCTTC+GGG | 0.398885 | 2.2:-4043644 | None:intergenic |
AGGTCCTAAGATTGCTCATT+TGG | 0.400492 | 2.2:+4043070 | MS.gene052025:CDS |
TACTACACAGAAGTTTGGTT+TGG | 0.413142 | 2.2:+4041186 | MS.gene052025:intron |
GTTCTGCCCGTCAGCATTCA+AGG | 0.415318 | 2.2:+4043997 | MS.gene052025:CDS |
TAGATGAAAGTCCTGCCAAT+TGG | 0.428361 | 2.2:+4041359 | MS.gene052025:intron |
AAGCACTTGCTGCAAATTCA+AGG | 0.437898 | 2.2:+4041037 | MS.gene052025:CDS |
CGCTGGAACGGTGGCTTCCG+AGG | 0.442006 | 2.2:+4043663 | MS.gene052025:CDS |
AAAACAAACCTGCTTTGTGC+CGG | 0.443349 | 2.2:-4043297 | None:intergenic |
GGTGGCTTCCGAGGGAAGAA+TGG | 0.447991 | 2.2:+4043672 | MS.gene052025:CDS |
ATTTGTCTCACTAAGTATGA+TGG | 0.460497 | 2.2:+4043002 | MS.gene052025:CDS |
CACCGCATCTGCAATCGTCT+TGG | 0.460837 | 2.2:+4043260 | MS.gene052025:CDS |
CTTGGATGGGTTTCGAGACC+CGG | 0.461852 | 2.2:+4043278 | MS.gene052025:CDS |
AAACAAACCTGCTTTGTGCC+GGG | 0.463925 | 2.2:-4043296 | None:intergenic |
GCATCTGCAATCGTCTTGGA+TGG | 0.472657 | 2.2:+4043264 | MS.gene052025:CDS |
CATTAGATTTAGACCTTAGG+AGG | 0.472679 | 2.2:-4041460 | None:intergenic |
AGATGAAAGTCCTGCCAATT+GGG | 0.477356 | 2.2:+4041360 | MS.gene052025:intron |
TTTGGTTTGGCTGAGATTGA+AGG | 0.478944 | 2.2:+4041199 | MS.gene052025:CDS |
ATTGGGAAAACGTGCTTGAA+GGG | 0.480580 | 2.2:+4041377 | MS.gene052025:CDS |
AATTGGGAAAACGTGCTTGA+AGG | 0.485015 | 2.2:+4041376 | MS.gene052025:CDS |
TTCGAGACCCGGCACAAAGC+AGG | 0.485026 | 2.2:+4043289 | MS.gene052025:CDS |
AAAACATGTTGGTCTTGTAA+TGG | 0.489092 | 2.2:-4040845 | None:intergenic |
ACAACAGGAACAAATGAATT+GGG | 0.495856 | 2.2:+4041235 | MS.gene052025:CDS |
GGACAGAAGATTTGCTGTCC+TGG | 0.497504 | 2.2:+4041753 | MS.gene052025:intron |
GGATCTGCTGCATACACAAC+AGG | 0.501474 | 2.2:+4041220 | MS.gene052025:CDS |
TCTGCACAGCGAGGCCGTAA+AGG | 0.510897 | 2.2:-4043959 | None:intergenic |
CAATCGAGACTTATTGGACC+TGG | 0.515302 | 2.2:-4044038 | None:intergenic |
ATTGGAACCCATTCTTCCCT+CGG | 0.515483 | 2.2:-4043680 | None:intergenic |
TTTGTCTCACTAAGTATGAT+GGG | 0.525399 | 2.2:+4043003 | MS.gene052025:CDS |
TCGATAAAAGAGAAGATGCC+AGG | 0.527820 | 2.2:-4041771 | None:intergenic |
GAAGTCTCCTTGAATGCTGA+CGG | 0.529421 | 2.2:-4044004 | None:intergenic |
CGAAGAAACTAGAAAGGCGC+TGG | 0.533567 | 2.2:+4043646 | MS.gene052025:CDS |
GTGGCTTCCGAGGGAAGAAT+GGG | 0.536497 | 2.2:+4043673 | MS.gene052025:CDS |
GATAGACACTACAGGTGATC+GGG | 0.536871 | 2.2:+4041420 | MS.gene052025:CDS |
TGTTGATATTCATCCTCCTA+AGG | 0.549271 | 2.2:+4041447 | MS.gene052025:CDS |
ATCCAAGACGATTGCAGATG+CGG | 0.553059 | 2.2:-4043262 | None:intergenic |
CGATAGACACTACAGGTGAT+CGG | 0.557021 | 2.2:+4041419 | MS.gene052025:CDS |
CATCTGCAATCGTCTTGGAT+GGG | 0.565079 | 2.2:+4043265 | MS.gene052025:CDS |
GCTGGAACGGTGGCTTCCGA+GGG | 0.566400 | 2.2:+4043664 | MS.gene052025:CDS |
AAGTCTCCTTGAATGCTGAC+GGG | 0.572187 | 2.2:-4044003 | None:intergenic |
CTAGAAAGGCGCTGGAACGG+TGG | 0.575424 | 2.2:+4043654 | MS.gene052025:CDS |
GCAATCTTAGGACCTACGCC+TGG | 0.583177 | 2.2:-4043062 | None:intergenic |
TTGAACAGGTAGGATTTGGA+AGG | 0.583390 | 2.2:+4043924 | MS.gene052025:intron |
AATACCCGAAGAAACTAGAA+AGG | 0.587513 | 2.2:+4043640 | MS.gene052025:CDS |
AAACTAGAAAGGCGCTGGAA+CGG | 0.595096 | 2.2:+4043651 | MS.gene052025:CDS |
GAGTATCTACACATATCCCT+TGG | 0.595774 | 2.2:-4043232 | None:intergenic |
ATTGCATGGAACAATGTCCA+AGG | 0.598895 | 2.2:+4043215 | MS.gene052025:CDS |
GGACATACCTAACTCAATTG+AGG | 0.599951 | 2.2:+4043025 | MS.gene052025:CDS |
TAAGTCTCGATTGAACAAGA+AGG | 0.604271 | 2.2:+4044048 | MS.gene052025:CDS |
ATGTATTCGATAGACACTAC+AGG | 0.611197 | 2.2:+4041412 | MS.gene052025:CDS |
AGTAGCTACCTACCTTGGTG+TGG | 0.611329 | 2.2:-4040883 | None:intergenic |
TCAAAATGGTCTTCTTACTG+CGG | 0.633029 | 2.2:+4042697 | MS.gene052025:CDS |
CAAGACGATTGCAGATGCGG+TGG | 0.636787 | 2.2:-4043259 | None:intergenic |
CGGCCTCGCTGTGCAGAGTG+TGG | 0.639111 | 2.2:+4043965 | MS.gene052025:CDS |
TTGAACAAGAAGGCTGAGTG+AGG | 0.643237 | 2.2:+4044058 | MS.gene052025:CDS |
TGTAGGTTATGATTATTGCA+TGG | 0.646193 | 2.2:+4043201 | MS.gene052025:intron |
TTGCATGGAACAATGTCCAA+GGG | 0.650900 | 2.2:+4043216 | MS.gene052025:CDS |
CTACTCTTACTTCCAGGCGT+AGG | 0.662681 | 2.2:+4043050 | MS.gene052025:CDS |
TTGTCTCACTAAGTATGATG+GGG | 0.670790 | 2.2:+4043004 | MS.gene052025:CDS |
TCCAAAACCAATCCACACCA+AGG | 0.688155 | 2.2:+4040871 | MS.gene052025:CDS |
ACACCACACTCTGCACAGCG+AGG | 0.705381 | 2.2:-4043968 | None:intergenic |
ACTAAGGAGCATGTTACTCG+CGG | 0.708659 | 2.2:+4041799 | MS.gene052025:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAATTATATTTCAATACA+TGG | - | chr2.2:4041155-4041174 | None:intergenic | 10.0% |
!! | ATATATATGTTATAACATAA+TGG | + | chr2.2:4043412-4043431 | MS.gene052025:intron | 10.0% |
!! | TATATATGTTATAACATAAT+GGG | + | chr2.2:4043413-4043432 | MS.gene052025:intron | 10.0% |
!! | TTGAAATCAAAATAAAATAA+TGG | - | chr2.2:4041665-4041684 | None:intergenic | 10.0% |
!!! | AAATTTTTATGCATATAATT+AGG | + | chr2.2:4041732-4041751 | MS.gene052025:intron | 10.0% |
!!! | TTTTTTTTTTGTCAAAAAAA+AGG | + | chr2.2:4042422-4042441 | MS.gene052025:intron | 10.0% |
!! | AATTAAGGAAAGAAAATTTA+AGG | - | chr2.2:4040954-4040973 | None:intergenic | 15.0% |
!! | ATTACTATATAAGATTATCA+AGG | + | chr2.2:4043372-4043391 | MS.gene052025:intron | 15.0% |
!! | TATTTACATTCTCAAATTTA+TGG | + | chr2.2:4041828-4041847 | MS.gene052025:intron | 15.0% |
!! | TCAATTAATAAAACACAAAA+AGG | - | chr2.2:4042897-4042916 | None:intergenic | 15.0% |
!! | TGAAGAGATAAAAAAAATTA+AGG | - | chr2.2:4040969-4040988 | None:intergenic | 15.0% |
!!! | CAATTTTCATACAAAAATTT+GGG | + | chr2.2:4041107-4041126 | MS.gene052025:intron | 15.0% |
!!! | TATAAAGTTAAGTTATTTCT+TGG | + | chr2.2:4041555-4041574 | MS.gene052025:intron | 15.0% |
!!! | TCAATTTTCATACAAAAATT+TGG | + | chr2.2:4041106-4041125 | MS.gene052025:intron | 15.0% |
!!! | TTTAAGATTCATTTTGTTAA+TGG | + | chr2.2:4043139-4043158 | MS.gene052025:intron | 15.0% |
!! | AAATTGCTTAGATTAGAAAA+AGG | - | chr2.2:4041087-4041106 | None:intergenic | 20.0% |
!! | AATCCAAAATATAACCATTT+AGG | - | chr2.2:4043792-4043811 | None:intergenic | 20.0% |
!! | AATTGCTTAGATTAGAAAAA+GGG | - | chr2.2:4041086-4041105 | None:intergenic | 20.0% |
!! | ATGGATATGATAAAAAAACA+TGG | - | chr2.2:4042260-4042279 | None:intergenic | 20.0% |
!! | CATACCAAAAGATAATTTAT+TGG | - | chr2.2:4043701-4043720 | None:intergenic | 20.0% |
!! | CTTAAAACTAATGAAACAAA+CGG | - | chr2.2:4043125-4043144 | None:intergenic | 20.0% |
!! | GTACAAGAAAAAAAAAAAAC+TGG | - | chr2.2:4043551-4043570 | None:intergenic | 20.0% |
!! | TTACAATAATACATCATGAT+GGG | + | chr2.2:4041597-4041616 | MS.gene052025:intron | 20.0% |
!!! | AAATGGTTATATTTTGGATT+TGG | + | chr2.2:4043792-4043811 | MS.gene052025:intron | 20.0% |
!!! | AATATCTATGCTTATACTTT+TGG | + | chr2.2:4042916-4042935 | MS.gene052025:intron | 20.0% |
!!! | ATATCTATGCTTATACTTTT+GGG | + | chr2.2:4042917-4042936 | MS.gene052025:intron | 20.0% |
!!! | ATGATCAATTAATTTGGATT+TGG | + | chr2.2:4042809-4042828 | MS.gene052025:intron | 20.0% |
!!! | TATATTAGCTATTGACTATT+GGG | + | chr2.2:4041639-4041658 | MS.gene052025:intron | 20.0% |
!!! | TTATATTAGCTATTGACTAT+TGG | + | chr2.2:4041638-4041657 | MS.gene052025:intron | 20.0% |
! | AATAATGAGATCTCAAACTT+AGG | - | chr2.2:4042054-4042073 | None:intergenic | 25.0% |
! | AATACCGAAAGCTTAAAAAA+TGG | - | chr2.2:4042851-4042870 | None:intergenic | 25.0% |
! | ACTATATACTACATAGTCAA+AGG | - | chr2.2:4043740-4043759 | None:intergenic | 25.0% |
! | ACTTGAATATGAAATTGAAC+AGG | + | chr2.2:4043910-4043929 | MS.gene052025:intron | 25.0% |
! | ATGTTCAGAAAAAGTTTGAA+TGG | - | chr2.2:4042279-4042298 | None:intergenic | 25.0% |
! | ATTATCAAGGCTTATGTTAT+GGG | + | chr2.2:4043385-4043404 | MS.gene052025:intron | 25.0% |
! | CTGAAACTTATAGAATATTC+TGG | + | chr2.2:4042331-4042350 | MS.gene052025:intron | 25.0% |
! | GGAAAGAAAATTTAAGGAAA+AGG | - | chr2.2:4040948-4040967 | None:intergenic | 25.0% |
! | GTTACAATAATACATCATGA+TGG | + | chr2.2:4041596-4041615 | MS.gene052025:intron | 25.0% |
! | TCTCGTATGATCAATTAATT+TGG | + | chr2.2:4042803-4042822 | MS.gene052025:intron | 25.0% |
!! | AATTTTACTACACAGAAGTT+TGG | + | chr2.2:4041181-4041200 | MS.gene052025:intron | 25.0% |
!! | CTTTTTATGTGATCAATTCT+TGG | + | chr2.2:4042602-4042621 | MS.gene052025:intron | 25.0% |
!! | GGTTCCAATAAATTATCTTT+TGG | + | chr2.2:4043694-4043713 | MS.gene052025:CDS | 25.0% |
!! | TGAGAATTTTGTTCTTTGAT+TGG | + | chr2.2:4043525-4043544 | MS.gene052025:intron | 25.0% |
!! | TGCATGAAATGTATAGTTTT+GGG | + | chr2.2:4041278-4041297 | MS.gene052025:intron | 25.0% |
!! | TTGCATGAAATGTATAGTTT+TGG | + | chr2.2:4041277-4041296 | MS.gene052025:intron | 25.0% |
!!! | ATGGAAGTGTTTTTAGTTTA+GGG | + | chr2.2:4041314-4041333 | MS.gene052025:intron | 25.0% |
!!! | GATTCCATTTTTTAAGCTTT+CGG | + | chr2.2:4042844-4042863 | MS.gene052025:intron | 25.0% |
!!! | TATGGAAGTGTTTTTAGTTT+AGG | + | chr2.2:4041313-4041332 | MS.gene052025:intron | 25.0% |
!!! | TCAAATAAAGTCTCACTTTT+TGG | - | chr2.2:4041063-4041082 | None:intergenic | 25.0% |
ACAACAGGAACAAATGAATT+GGG | + | chr2.2:4041235-4041254 | MS.gene052025:CDS | 30.0% | |
ACAGATGATAAACACAATTG+GGG | - | chr2.2:4042582-4042601 | None:intergenic | 30.0% | |
ACCAAACAAACAGAAGTAAA+AGG | - | chr2.2:4040805-4040824 | None:intergenic | 30.0% | |
ACCACTAACAAAATGATTTC+AGG | - | chr2.2:4043179-4043198 | None:intergenic | 30.0% | |
AGACAGATGATAAACACAAT+TGG | - | chr2.2:4042584-4042603 | None:intergenic | 30.0% | |
ATTTGTCTCACTAAGTATGA+TGG | + | chr2.2:4043002-4043021 | MS.gene052025:CDS | 30.0% | |
CAGTAAAGTTATCCACAATA+AGG | - | chr2.2:4041700-4041719 | None:intergenic | 30.0% | |
CATGACTATATGAAGTAGTT+TGG | + | chr2.2:4041952-4041971 | MS.gene052025:intron | 30.0% | |
CATTAAAGACATAAGCCAAA+AGG | - | chr2.2:4041531-4041550 | None:intergenic | 30.0% | |
CCTATATTGCATGTTATAGA+AGG | + | chr2.2:4042489-4042508 | MS.gene052025:intron | 30.0% | |
CCTTCTATAACATGCAATAT+AGG | - | chr2.2:4042492-4042511 | None:intergenic | 30.0% | |
CTACATTAAGAAATGCTGAA+CGG | - | chr2.2:4042101-4042120 | None:intergenic | 30.0% | |
CTAGATGAGAATCAACTAAA+TGG | - | chr2.2:4041979-4041998 | None:intergenic | 30.0% | |
GAATATGAAATTGAACAGGT+AGG | + | chr2.2:4043914-4043933 | MS.gene052025:intron | 30.0% | |
GACAGATGATAAACACAATT+GGG | - | chr2.2:4042583-4042602 | None:intergenic | 30.0% | |
GATTATCAAGGCTTATGTTA+TGG | + | chr2.2:4043384-4043403 | MS.gene052025:intron | 30.0% | |
TAGCATTAGATTTAGACCTT+AGG | - | chr2.2:4041466-4041485 | None:intergenic | 30.0% | |
TGTAGGTTATGATTATTGCA+TGG | + | chr2.2:4043201-4043220 | MS.gene052025:intron | 30.0% | |
TTAAGCTTTCGGTATTTCTT+TGG | + | chr2.2:4042855-4042874 | MS.gene052025:intron | 30.0% | |
TTGGACAGTTAAATTGTGTT+TGG | + | chr2.2:4041574-4041593 | MS.gene052025:intron | 30.0% | |
TTGTTGTATATGTAGTAGAG+GGG | + | chr2.2:4042022-4042041 | MS.gene052025:intron | 30.0% | |
TTTGTCTCACTAAGTATGAT+GGG | + | chr2.2:4043003-4043022 | MS.gene052025:CDS | 30.0% | |
! | ATTTGGTGAAATCACTGAAA+TGG | + | chr2.2:4042217-4042236 | MS.gene052025:intron | 30.0% |
! | CTTGTTGTATATGTAGTAGA+GGG | + | chr2.2:4042021-4042040 | MS.gene052025:intron | 30.0% |
! | GAAATTAAGCACTAACCTTT+TGG | + | chr2.2:4041513-4041532 | MS.gene052025:intron | 30.0% |
! | GCACCTAAATGGTTATATTT+TGG | + | chr2.2:4043786-4043805 | MS.gene052025:intron | 30.0% |
! | TCCTGAAATCATTTTGTTAG+TGG | + | chr2.2:4043175-4043194 | MS.gene052025:intron | 30.0% |
! | TCCTTTTACTTCTGTTTGTT+TGG | + | chr2.2:4040801-4040820 | MS.gene052025:CDS | 30.0% |
! | TCTTGTTGTATATGTAGTAG+AGG | + | chr2.2:4042020-4042039 | MS.gene052025:intron | 30.0% |
! | TTTAGTTGATTCTCATCTAG+TGG | + | chr2.2:4041979-4041998 | MS.gene052025:intron | 30.0% |
!! | AAAACATGTTGGTCTTGTAA+TGG | - | chr2.2:4040848-4040867 | None:intergenic | 30.0% |
!! | GGGTTTTATATAAGAAAAGC+TGG | + | chr2.2:4042957-4042976 | MS.gene052025:CDS | 30.0% |
!! | GGTTATATTTTGGATTTGGT+GGG | + | chr2.2:4043796-4043815 | MS.gene052025:intron | 30.0% |
!! | TGGTTATATTTTGGATTTGG+TGG | + | chr2.2:4043795-4043814 | MS.gene052025:intron | 30.0% |
!! | TTTGGGTTGATTCTATTCTA+TGG | + | chr2.2:4041295-4041314 | MS.gene052025:intron | 30.0% |
!!! | AAGCAGGTTTGTTTTAAGTT+TGG | + | chr2.2:4043305-4043324 | MS.gene052025:intron | 30.0% |
!!! | GAGTGTGTTTTTTCAAGAAT+AGG | + | chr2.2:4042656-4042675 | MS.gene052025:intron | 30.0% |
AAAGCTACCAAAGAACATAC+AGG | - | chr2.2:4042770-4042789 | None:intergenic | 35.0% | |
AACCATTTAGGTGCATTTGT+TGG | - | chr2.2:4043780-4043799 | None:intergenic | 35.0% | |
AAGCTACCAAAGAACATACA+GGG | - | chr2.2:4042769-4042788 | None:intergenic | 35.0% | |
AATACCCGAAGAAACTAGAA+AGG | + | chr2.2:4043640-4043659 | MS.gene052025:CDS | 35.0% | |
ACCATTTGCATTCAACTTCA+TGG | - | chr2.2:4042164-4042183 | None:intergenic | 35.0% | |
AGTAGTTCCTCAATTGAGTT+AGG | - | chr2.2:4043035-4043054 | None:intergenic | 35.0% | |
ATGGTTGGACTAAGATTTAG+AGG | + | chr2.2:4042179-4042198 | MS.gene052025:intron | 35.0% | |
ATGTATTCGATAGACACTAC+AGG | + | chr2.2:4041412-4041431 | MS.gene052025:CDS | 35.0% | |
CACAACAGGAACAAATGAAT+TGG | + | chr2.2:4041234-4041253 | MS.gene052025:CDS | 35.0% | |
CATACCAAATGAGCAATCTT+AGG | - | chr2.2:4043077-4043096 | None:intergenic | 35.0% | |
CATTAGATTTAGACCTTAGG+AGG | - | chr2.2:4041463-4041482 | None:intergenic | 35.0% | |
CTTGTTCAATCGAGACTTAT+TGG | - | chr2.2:4044047-4044066 | None:intergenic | 35.0% | |
GAAATTGAACAGGTAGGATT+TGG | + | chr2.2:4043920-4043939 | MS.gene052025:intron | 35.0% | |
GATTTACCCTGTATGTTCTT+TGG | + | chr2.2:4042760-4042779 | MS.gene052025:intron | 35.0% | |
GGACAATATGTACTCCTTTA+CGG | + | chr2.2:4043945-4043964 | MS.gene052025:CDS | 35.0% | |
TAACAGTGTGAACCTTATTG+TGG | + | chr2.2:4041685-4041704 | MS.gene052025:intron | 35.0% | |
TAAGTCTCGATTGAACAAGA+AGG | + | chr2.2:4044048-4044067 | MS.gene052025:CDS | 35.0% | |
TACCAACAAATGCACCTAAA+TGG | + | chr2.2:4043775-4043794 | MS.gene052025:intron | 35.0% | |
TACTACACAGAAGTTTGGTT+TGG | + | chr2.2:4041186-4041205 | MS.gene052025:intron | 35.0% | |
TAGCCAGCAAATATAATGTG+AGG | - | chr2.2:4043334-4043353 | None:intergenic | 35.0% | |
TAGCCTCACATTATATTTGC+TGG | + | chr2.2:4043328-4043347 | MS.gene052025:intron | 35.0% | |
TCAAAATGGTCTTCTTACTG+CGG | + | chr2.2:4042697-4042716 | MS.gene052025:CDS | 35.0% | |
TGAAGTTGAATGCAAATGGT+TGG | + | chr2.2:4042164-4042183 | MS.gene052025:intron | 35.0% | |
TGTTGATATTCATCCTCCTA+AGG | + | chr2.2:4041447-4041466 | MS.gene052025:CDS | 35.0% | |
TTGACGTGTAAGAGATGTTT+GGG | + | chr2.2:4042302-4042321 | MS.gene052025:intron | 35.0% | |
TTGGACTAAGATTTAGAGGA+AGG | + | chr2.2:4042183-4042202 | MS.gene052025:intron | 35.0% | |
TTGTCTCACTAAGTATGATG+GGG | + | chr2.2:4043004-4043023 | MS.gene052025:CDS | 35.0% | |
TTTGACGTGTAAGAGATGTT+TGG | + | chr2.2:4042301-4042320 | MS.gene052025:intron | 35.0% | |
! | ACATTATATTTGCTGGCTAG+AGG | + | chr2.2:4043335-4043354 | MS.gene052025:intron | 35.0% |
! | CAATAATACATCATGATGGG+TGG | + | chr2.2:4041600-4041619 | MS.gene052025:intron | 35.0% |
! | CATTATATTTGCTGGCTAGA+GGG | + | chr2.2:4043336-4043355 | MS.gene052025:intron | 35.0% |
! | GGTATTGAAGTTCTCTGATA+TGG | - | chr2.2:4043626-4043645 | None:intergenic | 35.0% |
! | GTTTTTGCGTGTGTTGAATT+GGG | - | chr2.2:4040996-4041015 | None:intergenic | 35.0% |
! | TCTTTTATCGAGCCAAACTA+AGG | + | chr2.2:4041783-4041802 | MS.gene052025:CDS | 35.0% |
!! | ATTTATATTGACTTCGCGTG+TGG | + | chr2.2:4041485-4041504 | MS.gene052025:intron | 35.0% |
!! | CATTTTGTTAGTGGTGATGT+AGG | + | chr2.2:4043184-4043203 | MS.gene052025:intron | 35.0% |
!! | TGTTTTTGCGTGTGTTGAAT+TGG | - | chr2.2:4040997-4041016 | None:intergenic | 35.0% |
!!! | GTTTTGGAGGAAAAACATGT+TGG | - | chr2.2:4040859-4040878 | None:intergenic | 35.0% |
AAAACAAACCTGCTTTGTGC+CGG | - | chr2.2:4043300-4043319 | None:intergenic | 40.0% | |
AAGTTAGTAGCTACCTACCT+TGG | - | chr2.2:4040891-4040910 | None:intergenic | 40.0% | |
AAGTTCTCTGATATGGCATG+GGG | - | chr2.2:4043619-4043638 | None:intergenic | 40.0% | |
AATTGGGAAAACGTGCTTGA+AGG | + | chr2.2:4041376-4041395 | MS.gene052025:CDS | 40.0% | |
ACTCAACGTCTTCGTCAAAA+TGG | + | chr2.2:4042683-4042702 | MS.gene052025:CDS | 40.0% | |
AGATGAAAGTCCTGCCAATT+GGG | + | chr2.2:4041360-4041379 | MS.gene052025:intron | 40.0% | |
AGGTCCTAAGATTGCTCATT+TGG | + | chr2.2:4043070-4043089 | MS.gene052025:CDS | 40.0% | |
ATTGCATGGAACAATGTCCA+AGG | + | chr2.2:4043215-4043234 | MS.gene052025:CDS | 40.0% | |
ATTGGGAAAACGTGCTTGAA+GGG | + | chr2.2:4041377-4041396 | MS.gene052025:CDS | 40.0% | |
ATTTGCAGCAAGTGCTTCTT+TGG | - | chr2.2:4041034-4041053 | None:intergenic | 40.0% | |
CATCTAGTGGAAAGATGCTT+TGG | + | chr2.2:4041992-4042011 | MS.gene052025:intron | 40.0% | |
GAAGTTCTCTGATATGGCAT+GGG | - | chr2.2:4043620-4043639 | None:intergenic | 40.0% | |
GAGTAACATGCTCCTTAGTT+TGG | - | chr2.2:4041798-4041817 | None:intergenic | 40.0% | |
GAGTATCTACACATATCCCT+TGG | - | chr2.2:4043235-4043254 | None:intergenic | 40.0% | |
GATTGCTCATTTGGTATGTG+CGG | + | chr2.2:4043079-4043098 | MS.gene052025:intron | 40.0% | |
GCATTCAACTTCATGGCAAT+AGG | - | chr2.2:4042157-4042176 | None:intergenic | 40.0% | |
GCCATGAAGTTGAATGCAAA+TGG | + | chr2.2:4042160-4042179 | MS.gene052025:intron | 40.0% | |
GGACATACCTAACTCAATTG+AGG | + | chr2.2:4043025-4043044 | MS.gene052025:CDS | 40.0% | |
TAGATGAAAGTCCTGCCAAT+TGG | + | chr2.2:4041359-4041378 | MS.gene052025:intron | 40.0% | |
TCGATAAAAGAGAAGATGCC+AGG | - | chr2.2:4041774-4041793 | None:intergenic | 40.0% | |
TGAAGTTCTCTGATATGGCA+TGG | - | chr2.2:4043621-4043640 | None:intergenic | 40.0% | |
TTGAACAGGTAGGATTTGGA+AGG | + | chr2.2:4043924-4043943 | MS.gene052025:intron | 40.0% | |
TTGCATGGAACAATGTCCAA+GGG | + | chr2.2:4043216-4043235 | MS.gene052025:CDS | 40.0% | |
! | AAGCACTTGCTGCAAATTCA+AGG | + | chr2.2:4041037-4041056 | MS.gene052025:CDS | 40.0% |
! | AAGTCTTGATTTTGCTCCAG+AGG | + | chr2.2:4042123-4042142 | MS.gene052025:intron | 40.0% |
! | AGACTTCAAGTTCATCTTCC+AGG | + | chr2.2:4044020-4044039 | MS.gene052025:CDS | 40.0% |
! | CTTTTGGGCATTCTTTTCTC+AGG | + | chr2.2:4042932-4042951 | MS.gene052025:intron | 40.0% |
! | TTCAAGCACGTTTTCCCAAT+TGG | - | chr2.2:4041377-4041396 | None:intergenic | 40.0% |
!! | CATGATGGGTGGATTGTTAT+TGG | + | chr2.2:4041611-4041630 | MS.gene052025:intron | 40.0% |
!! | TTTGGTTTGGCTGAGATTGA+AGG | + | chr2.2:4041199-4041218 | MS.gene052025:CDS | 40.0% |
!!! | GGAAGGTTTTGAGCATGATT+TGG | + | chr2.2:4042200-4042219 | MS.gene052025:intron | 40.0% |
AAACAAACCTGCTTTGTGCC+GGG | - | chr2.2:4043299-4043318 | None:intergenic | 45.0% | |
AAACCAATCCACACCAAGGT+AGG | + | chr2.2:4040875-4040894 | MS.gene052025:intron | 45.0% | |
AAGTCTCCTTGAATGCTGAC+GGG | - | chr2.2:4044006-4044025 | None:intergenic | 45.0% | |
AGCAGCCATTATGTGCACTT+TGG | + | chr2.2:4042555-4042574 | MS.gene052025:intron | 45.0% | |
ATCCAAGACGATTGCAGATG+CGG | - | chr2.2:4043265-4043284 | None:intergenic | 45.0% | |
ATTGGAACCCATTCTTCCCT+CGG | - | chr2.2:4043683-4043702 | None:intergenic | 45.0% | |
CAATCGAGACTTATTGGACC+TGG | - | chr2.2:4044041-4044060 | None:intergenic | 45.0% | |
CATCTGCAATCGTCTTGGAT+GGG | + | chr2.2:4043265-4043284 | MS.gene052025:CDS | 45.0% | |
CGATAGACACTACAGGTGAT+CGG | + | chr2.2:4041419-4041438 | MS.gene052025:CDS | 45.0% | |
GAAGTCTCCTTGAATGCTGA+CGG | - | chr2.2:4044007-4044026 | None:intergenic | 45.0% | |
GAGGAACTACTCTTACTTCC+AGG | + | chr2.2:4043044-4043063 | MS.gene052025:CDS | 45.0% | |
GATAGACACTACAGGTGATC+GGG | + | chr2.2:4041420-4041439 | MS.gene052025:CDS | 45.0% | |
GCAATAGGTTTCTCATCCTC+TGG | - | chr2.2:4042142-4042161 | None:intergenic | 45.0% | |
TCCAAAACCAATCCACACCA+AGG | + | chr2.2:4040871-4040890 | MS.gene052025:CDS | 45.0% | |
TTGCGCTTTCTTTCTGTGTC+AGG | - | chr2.2:4042448-4042467 | None:intergenic | 45.0% | |
! | ACTAAGGAGCATGTTACTCG+CGG | + | chr2.2:4041799-4041818 | MS.gene052025:CDS | 45.0% |
! | GGGCATTCTTTTCTCAGGTT+GGG | + | chr2.2:4042937-4042956 | MS.gene052025:intron | 45.0% |
! | TGGGCATTCTTTTCTCAGGT+TGG | + | chr2.2:4042936-4042955 | MS.gene052025:intron | 45.0% |
!! | AAACTAGAAAGGCGCTGGAA+CGG | + | chr2.2:4043651-4043670 | MS.gene052025:CDS | 45.0% |
!! | AGCGCCTTTCTAGTTTCTTC+GGG | - | chr2.2:4043647-4043666 | None:intergenic | 45.0% |
!! | CAGCGCCTTTCTAGTTTCTT+CGG | - | chr2.2:4043648-4043667 | None:intergenic | 45.0% |
!! | TTCTCAGTGCTGACAAACAC+CGG | - | chr2.2:4043511-4043530 | None:intergenic | 45.0% |
!!! | ACCTTGGTGTGGATTGGTTT+TGG | - | chr2.2:4040875-4040894 | None:intergenic | 45.0% |
!!! | TTGGTGTGGATTGGTTTTGG+AGG | - | chr2.2:4040872-4040891 | None:intergenic | 45.0% |
AGTAGCTACCTACCTTGGTG+TGG | - | chr2.2:4040886-4040905 | None:intergenic | 50.0% | |
CTACTCTTACTTCCAGGCGT+AGG | + | chr2.2:4043050-4043069 | MS.gene052025:CDS | 50.0% | |
GCATCTGCAATCGTCTTGGA+TGG | + | chr2.2:4043264-4043283 | MS.gene052025:CDS | 50.0% | |
GGATCTGCTGCATACACAAC+AGG | + | chr2.2:4041220-4041239 | MS.gene052025:CDS | 50.0% | |
GGGGTCCAAAGTGCACATAA+TGG | - | chr2.2:4042563-4042582 | None:intergenic | 50.0% | |
TCTGATATGGCATGGGGAAG+AGG | - | chr2.2:4043613-4043632 | None:intergenic | 50.0% | |
! | AGCACGTTTTCCCAATTGGC+AGG | - | chr2.2:4041373-4041392 | None:intergenic | 50.0% |
! | CGAAGAAACTAGAAAGGCGC+TGG | + | chr2.2:4043646-4043665 | MS.gene052025:CDS | 50.0% |
! | CTACCTACCTTGGTGTGGAT+TGG | - | chr2.2:4040881-4040900 | None:intergenic | 50.0% |
!! | GGACAGAAGATTTGCTGTCC+TGG | + | chr2.2:4041753-4041772 | MS.gene052025:intron | 50.0% |
CAAGACGATTGCAGATGCGG+TGG | - | chr2.2:4043262-4043281 | None:intergenic | 55.0% | |
CACCGCATCTGCAATCGTCT+TGG | + | chr2.2:4043260-4043279 | MS.gene052025:CDS | 55.0% | |
GCAATCTTAGGACCTACGCC+TGG | - | chr2.2:4043065-4043084 | None:intergenic | 55.0% | |
GTGGCTTCCGAGGGAAGAAT+GGG | + | chr2.2:4043673-4043692 | MS.gene052025:CDS | 55.0% | |
GTTCTGCCCGTCAGCATTCA+AGG | + | chr2.2:4043997-4044016 | MS.gene052025:CDS | 55.0% | |
! | CTTGGATGGGTTTCGAGACC+CGG | + | chr2.2:4043278-4043297 | MS.gene052025:CDS | 55.0% |
!! | TGCTTGACTTGCGAGTCAGC+CGG | + | chr2.2:4043489-4043508 | MS.gene052025:intron | 55.0% |
ACACCACACTCTGCACAGCG+AGG | - | chr2.2:4043971-4043990 | None:intergenic | 60.0% | |
GGTGGCTTCCGAGGGAAGAA+TGG | + | chr2.2:4043672-4043691 | MS.gene052025:CDS | 60.0% | |
TCTGCACAGCGAGGCCGTAA+AGG | - | chr2.2:4043962-4043981 | None:intergenic | 60.0% | |
TTCGAGACCCGGCACAAAGC+AGG | + | chr2.2:4043289-4043308 | MS.gene052025:CDS | 60.0% | |
!! | CTAGAAAGGCGCTGGAACGG+TGG | + | chr2.2:4043654-4043673 | MS.gene052025:CDS | 60.0% |
GCTGGAACGGTGGCTTCCGA+GGG | + | chr2.2:4043664-4043683 | MS.gene052025:CDS | 65.0% | |
CGCTGGAACGGTGGCTTCCG+AGG | + | chr2.2:4043663-4043682 | MS.gene052025:CDS | 70.0% | |
CGGCCTCGCTGTGCAGAGTG+TGG | + | chr2.2:4043965-4043984 | MS.gene052025:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 4040790 | 4044078 | 4040790 | ID=MS.gene052025 |
chr2.2 | mRNA | 4040790 | 4044078 | 4040790 | ID=MS.gene052025.t1;Parent=MS.gene052025 |
chr2.2 | exon | 4040790 | 4040892 | 4040790 | ID=MS.gene052025.t1.exon1;Parent=MS.gene052025.t1 |
chr2.2 | CDS | 4040790 | 4040892 | 4040790 | ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1 |
chr2.2 | exon | 4040990 | 4041066 | 4040990 | ID=MS.gene052025.t1.exon2;Parent=MS.gene052025.t1 |
chr2.2 | CDS | 4040990 | 4041066 | 4040990 | ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1 |
chr2.2 | exon | 4041196 | 4041265 | 4041196 | ID=MS.gene052025.t1.exon3;Parent=MS.gene052025.t1 |
chr2.2 | CDS | 4041196 | 4041265 | 4041196 | ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1 |
chr2.2 | exon | 4041362 | 4041468 | 4041362 | ID=MS.gene052025.t1.exon4;Parent=MS.gene052025.t1 |
chr2.2 | CDS | 4041362 | 4041468 | 4041362 | ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1 |
chr2.2 | exon | 4041754 | 4041820 | 4041754 | ID=MS.gene052025.t1.exon5;Parent=MS.gene052025.t1 |
chr2.2 | CDS | 4041754 | 4041820 | 4041754 | ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1 |
chr2.2 | exon | 4042678 | 4042769 | 4042678 | ID=MS.gene052025.t1.exon6;Parent=MS.gene052025.t1 |
chr2.2 | CDS | 4042678 | 4042769 | 4042678 | ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1 |
chr2.2 | exon | 4042954 | 4043091 | 4042954 | ID=MS.gene052025.t1.exon7;Parent=MS.gene052025.t1 |
chr2.2 | CDS | 4042954 | 4043091 | 4042954 | ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1 |
chr2.2 | exon | 4043206 | 4043310 | 4043206 | ID=MS.gene052025.t1.exon8;Parent=MS.gene052025.t1 |
chr2.2 | CDS | 4043206 | 4043310 | 4043206 | ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1 |
chr2.2 | exon | 4043632 | 4043715 | 4043632 | ID=MS.gene052025.t1.exon9;Parent=MS.gene052025.t1 |
chr2.2 | CDS | 4043632 | 4043715 | 4043632 | ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1 |
chr2.2 | exon | 4043932 | 4044078 | 4043932 | ID=MS.gene052025.t1.exon10;Parent=MS.gene052025.t1 |
chr2.2 | CDS | 4043932 | 4044078 | 4043932 | ID=cds.MS.gene052025.t1;Parent=MS.gene052025.t1 |
Gene Sequence |
Protein sequence |