Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40511.t1 | AFK46541.1 | 93.2 | 146 | 9 | 1 | 1 | 145 | 18 | 163 | 1.10E-68 | 269.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40511.t1 | B7FGX7 | 93.2 | 146 | 9 | 1 | 1 | 145 | 18 | 163 | 7.8e-69 | 269.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene40511 | 0.844418 | 7.65E-59 | -1.69E-46 |
| MS.gene049284 | MS.gene40511 | 0.811309 | 7.47E-51 | -1.69E-46 |
| MS.gene049346 | MS.gene40511 | 0.801998 | 6.91E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene40511 | 0.816998 | 4.14E-52 | -1.69E-46 |
| MS.gene049389 | MS.gene40511 | 0.8295 | 4.97E-55 | -1.69E-46 |
| MS.gene049491 | MS.gene40511 | 0.831892 | 1.29E-55 | -1.69E-46 |
| MS.gene049599 | MS.gene40511 | -0.805607 | 1.23E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene40511 | 0.824263 | 8.87E-54 | -1.69E-46 |
| MS.gene049662 | MS.gene40511 | 0.832299 | 1.02E-55 | -1.69E-46 |
| MS.gene049758 | MS.gene40511 | 0.894849 | 1.67E-75 | -1.69E-46 |
| MS.gene050076 | MS.gene40511 | 0.827374 | 1.62E-54 | -1.69E-46 |
| MS.gene050099 | MS.gene40511 | 0.848191 | 7.17E-60 | -1.69E-46 |
| MS.gene050128 | MS.gene40511 | 0.862079 | 6.53E-64 | -1.69E-46 |
| MS.gene050301 | MS.gene40511 | 0.893911 | 4.04E-75 | -1.69E-46 |
| MS.gene050397 | MS.gene40511 | 0.841037 | 6.06E-58 | -1.69E-46 |
| MS.gene050404 | MS.gene40511 | 0.8533 | 2.62E-61 | -1.69E-46 |
| MS.gene050406 | MS.gene40511 | 0.833991 | 3.88E-56 | -1.69E-46 |
| MS.gene050432 | MS.gene40511 | 0.831841 | 1.33E-55 | -1.69E-46 |
| MS.gene050464 | MS.gene40511 | 0.838117 | 3.48E-57 | -1.69E-46 |
| MS.gene050529 | MS.gene40511 | 0.869229 | 3.62E-66 | -1.69E-46 |
| MS.gene050670 | MS.gene40511 | 0.823947 | 1.05E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene40511 | 0.801858 | 7.38E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene40511 | 0.847483 | 1.12E-59 | -1.69E-46 |
| MS.gene05105 | MS.gene40511 | 0.819116 | 1.38E-52 | -1.69E-46 |
| MS.gene05119 | MS.gene40511 | -0.808842 | 2.54E-50 | -1.69E-46 |
| MS.gene051471 | MS.gene40511 | 0.847915 | 8.55E-60 | -1.69E-46 |
| MS.gene051860 | MS.gene40511 | 0.827591 | 1.44E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene40511 | 0.804509 | 2.09E-49 | -1.69E-46 |
| MS.gene052025 | MS.gene40511 | 0.806037 | 9.99E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene40511 | 0.830969 | 2.18E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene40511 | 0.886929 | 2.23E-72 | -1.69E-46 |
| MS.gene052178 | MS.gene40511 | 0.872063 | 4.24E-67 | -1.69E-46 |
| MS.gene052188 | MS.gene40511 | 0.888445 | 5.87E-73 | -1.69E-46 |
| MS.gene052207 | MS.gene40511 | 0.820993 | 5.11E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene40511 | 0.827094 | 1.89E-54 | -1.69E-46 |
| MS.gene052290 | MS.gene40511 | 0.818509 | 1.89E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene40511 | 0.857124 | 2.02E-62 | -1.69E-46 |
| MS.gene052322 | MS.gene40511 | 0.803569 | 3.28E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene40511 | 0.826507 | 2.61E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene40511 | 0.881002 | 3.44E-70 | -1.69E-46 |
| MS.gene052917 | MS.gene40511 | -0.802748 | 4.84E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene40511 | 0.805828 | 1.11E-49 | -1.69E-46 |
| MS.gene053073 | MS.gene40511 | 0.823009 | 1.74E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene40511 | 0.810347 | 1.21E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene40511 | 0.805528 | 1.28E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene40511 | 0.901042 | 4.00E-78 | -1.69E-46 |
| MS.gene053557 | MS.gene40511 | 0.869667 | 2.61E-66 | -1.69E-46 |
| MS.gene053559 | MS.gene40511 | 0.812764 | 3.60E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene40511 | 0.87354 | 1.36E-67 | -1.69E-46 |
| MS.gene053907 | MS.gene40511 | 0.806063 | 9.87E-50 | -1.69E-46 |
| MS.gene053928 | MS.gene40511 | 0.813156 | 2.95E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene40511 | 0.848057 | 7.81E-60 | -1.69E-46 |
| MS.gene054349 | MS.gene40511 | 0.801277 | 9.71E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene40511 | 0.813852 | 2.07E-51 | -1.69E-46 |
| MS.gene054473 | MS.gene40511 | 0.809622 | 1.73E-50 | -1.69E-46 |
| MS.gene054542 | MS.gene40511 | 0.814235 | 1.71E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene40511 | 0.824566 | 7.53E-54 | -1.69E-46 |
| MS.gene054955 | MS.gene40511 | 0.800259 | 1.57E-48 | -1.69E-46 |
| MS.gene054983 | MS.gene40511 | 0.802498 | 5.45E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene40511 | 0.860849 | 1.55E-63 | -1.69E-46 |
| MS.gene055254 | MS.gene40511 | 0.839447 | 1.58E-57 | -1.69E-46 |
| MS.gene055277 | MS.gene40511 | 0.862339 | 5.44E-64 | -1.69E-46 |
| MS.gene055390 | MS.gene40511 | 0.83785 | 4.08E-57 | -1.69E-46 |
| MS.gene055422 | MS.gene40511 | 0.894092 | 3.41E-75 | -1.69E-46 |
| MS.gene055428 | MS.gene40511 | 0.851287 | 9.79E-61 | -1.69E-46 |
| MS.gene05553 | MS.gene40511 | 0.803976 | 2.70E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene40511 | 0.839296 | 1.72E-57 | -1.69E-46 |
| MS.gene055712 | MS.gene40511 | 0.839874 | 1.22E-57 | -1.69E-46 |
| MS.gene055859 | MS.gene40511 | 0.834642 | 2.66E-56 | -1.69E-46 |
| MS.gene05602 | MS.gene40511 | 0.818783 | 1.64E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene40511 | 0.808926 | 2.44E-50 | -1.69E-46 |
| MS.gene056314 | MS.gene40511 | 0.844706 | 6.40E-59 | -1.69E-46 |
| MS.gene056407 | MS.gene40511 | 0.843708 | 1.19E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene40511 | 0.838637 | 2.56E-57 | -1.69E-46 |
| MS.gene056609 | MS.gene40511 | 0.847538 | 1.09E-59 | -1.69E-46 |
| MS.gene056612 | MS.gene40511 | 0.862614 | 4.47E-64 | -1.69E-46 |
| MS.gene056659 | MS.gene40511 | 0.845292 | 4.45E-59 | -1.69E-46 |
| MS.gene056719 | MS.gene40511 | 0.826339 | 2.86E-54 | -1.69E-46 |
| MS.gene056796 | MS.gene40511 | 0.826004 | 3.44E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene40511 | 0.865839 | 4.41E-65 | -1.69E-46 |
| MS.gene057121 | MS.gene40511 | 0.808566 | 2.91E-50 | -1.69E-46 |
| MS.gene057295 | MS.gene40511 | 0.831157 | 1.96E-55 | -1.69E-46 |
| MS.gene057439 | MS.gene40511 | 0.862242 | 5.82E-64 | -1.69E-46 |
| MS.gene057448 | MS.gene40511 | 0.854076 | 1.57E-61 | -1.69E-46 |
| MS.gene057449 | MS.gene40511 | 0.840201 | 1.00E-57 | -1.69E-46 |
| MS.gene057450 | MS.gene40511 | 0.86498 | 8.23E-65 | -1.69E-46 |
| MS.gene057794 | MS.gene40511 | 0.810894 | 9.18E-51 | -1.69E-46 |
| MS.gene057796 | MS.gene40511 | 0.833592 | 4.88E-56 | -1.69E-46 |
| MS.gene058002 | MS.gene40511 | 0.864009 | 1.65E-64 | -1.69E-46 |
| MS.gene058082 | MS.gene40511 | 0.955488 | 2.70E-113 | -1.69E-46 |
| MS.gene05811 | MS.gene40511 | 0.872676 | 2.65E-67 | -1.69E-46 |
| MS.gene058142 | MS.gene40511 | 0.844079 | 9.44E-59 | -1.69E-46 |
| MS.gene058233 | MS.gene40511 | 0.823885 | 1.09E-53 | -1.69E-46 |
| MS.gene058276 | MS.gene40511 | 0.833038 | 6.71E-56 | -1.69E-46 |
| MS.gene058293 | MS.gene40511 | 0.843478 | 1.37E-58 | -1.69E-46 |
| MS.gene058365 | MS.gene40511 | 0.846194 | 2.53E-59 | -1.69E-46 |
| MS.gene058660 | MS.gene40511 | 0.853436 | 2.39E-61 | -1.69E-46 |
| MS.gene058710 | MS.gene40511 | 0.832028 | 1.19E-55 | -1.69E-46 |
| MS.gene058748 | MS.gene40511 | 0.837844 | 4.09E-57 | -1.69E-46 |
| MS.gene058749 | MS.gene40511 | 0.828433 | 9.02E-55 | -1.69E-46 |
| MS.gene058787 | MS.gene40511 | 0.846021 | 2.82E-59 | -1.69E-46 |
| MS.gene058845 | MS.gene40511 | 0.856784 | 2.54E-62 | -1.69E-46 |
| MS.gene05886 | MS.gene40511 | 0.810319 | 1.22E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene40511 | 0.807378 | 5.20E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene40511 | 0.846436 | 2.18E-59 | -1.69E-46 |
| MS.gene059228 | MS.gene40511 | 0.805368 | 1.38E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene40511 | 0.843109 | 1.72E-58 | -1.69E-46 |
| MS.gene059294 | MS.gene40511 | 0.819709 | 1.01E-52 | -1.69E-46 |
| MS.gene059326 | MS.gene40511 | 0.822776 | 1.98E-53 | -1.69E-46 |
| MS.gene059342 | MS.gene40511 | 0.837372 | 5.40E-57 | -1.69E-46 |
| MS.gene059366 | MS.gene40511 | 0.803837 | 2.88E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene40511 | 0.857531 | 1.53E-62 | -1.69E-46 |
| MS.gene059597 | MS.gene40511 | 0.858902 | 5.99E-63 | -1.69E-46 |
| MS.gene05959 | MS.gene40511 | 0.83331 | 5.74E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene40511 | 0.861844 | 7.71E-64 | -1.69E-46 |
| MS.gene059688 | MS.gene40511 | 0.869816 | 2.33E-66 | -1.69E-46 |
| MS.gene059692 | MS.gene40511 | 0.891681 | 3.18E-74 | -1.69E-46 |
| MS.gene059695 | MS.gene40511 | 0.886493 | 3.26E-72 | -1.69E-46 |
| MS.gene059708 | MS.gene40511 | 0.815316 | 9.84E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene40511 | 0.882896 | 7.09E-71 | -1.69E-46 |
| MS.gene059894 | MS.gene40511 | 0.893168 | 8.08E-75 | -1.69E-46 |
| MS.gene059899 | MS.gene40511 | 0.86942 | 3.14E-66 | -1.69E-46 |
| MS.gene059974 | MS.gene40511 | 0.828393 | 9.22E-55 | -1.69E-46 |
| MS.gene06037 | MS.gene40511 | 0.859882 | 3.04E-63 | -1.69E-46 |
| MS.gene060407 | MS.gene40511 | 0.815253 | 1.02E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene40511 | 0.819014 | 1.45E-52 | -1.69E-46 |
| MS.gene060495 | MS.gene40511 | 0.829048 | 6.40E-55 | -1.69E-46 |
| MS.gene06090 | MS.gene40511 | 0.808071 | 3.71E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene40511 | 0.895764 | 7.03E-76 | -1.69E-46 |
| MS.gene061051 | MS.gene40511 | -0.850986 | 1.19E-60 | -1.69E-46 |
| MS.gene061112 | MS.gene40511 | 0.813881 | 2.04E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene40511 | 0.814756 | 1.31E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene40511 | 0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene061265 | MS.gene40511 | 0.812607 | 3.89E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40511.t1 | MTR_5g007210 | 93.151 | 146 | 9 | 1 | 1 | 145 | 18 | 163 | 2.02e-95 | 272 |
| MS.gene40511.t1 | MTR_5g024680 | 43.564 | 101 | 51 | 3 | 33 | 128 | 51 | 150 | 7.94e-18 | 75.5 |
| MS.gene40511.t1 | MTR_3g115930 | 42.857 | 98 | 52 | 3 | 44 | 139 | 68 | 163 | 3.32e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40511.t1 | AT5G16660 | 52.055 | 146 | 66 | 3 | 1 | 143 | 21 | 165 | 2.76e-46 | 148 |
| MS.gene40511.t1 | AT5G16660 | 53.061 | 147 | 63 | 5 | 1 | 144 | 21 | 164 | 1.41e-41 | 136 |
| MS.gene40511.t1 | AT3G02900 | 47.020 | 151 | 66 | 4 | 1 | 144 | 17 | 160 | 3.02e-37 | 125 |
| MS.gene40511.t1 | AT3G02900 | 51.163 | 129 | 54 | 3 | 23 | 144 | 40 | 166 | 6.04e-37 | 124 |
| MS.gene40511.t1 | AT1G42960 | 41.228 | 114 | 59 | 4 | 32 | 139 | 51 | 162 | 1.24e-19 | 80.5 |
Find 43 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTTGCTGGCTTTCTTC+TGG | 0.108341 | 5.3:+2093639 | MS.gene40511:CDS |
| CTGCTAAATGAAGATGAATA+TGG | 0.203723 | 5.3:+2094895 | MS.gene40511:CDS |
| CTTCAAATGCCTTCAAATTC+AGG | 0.204641 | 5.3:-2095283 | None:intergenic |
| AGAGGTGGGGATTTGGTTGC+TGG | 0.280443 | 5.3:+2093628 | MS.gene40511:CDS |
| TTGGTTGCTGGCTTTCTTCT+GGG | 0.303767 | 5.3:+2093640 | MS.gene40511:CDS |
| CTGCACGAACCGGTGAAATA+AGG | 0.322738 | 5.3:-2092738 | None:intergenic |
| TGATAACAGAGGTGGGGATT+TGG | 0.357687 | 5.3:+2093621 | MS.gene40511:CDS |
| AGCCCTTCGTCATAATAATA+AGG | 0.364499 | 5.3:-2094940 | None:intergenic |
| ATTCAGGATCACTTTCTAAA+GGG | 0.373701 | 5.3:-2095267 | None:intergenic |
| TATCAATGGCAGAATTTAGT+TGG | 0.383082 | 5.3:-2095198 | None:intergenic |
| CGGTGAAATAAGGTTCCTTC+TGG | 0.390363 | 5.3:-2092728 | None:intergenic |
| GAAAGTGATCCTGAATTTGA+AGG | 0.404369 | 5.3:+2095274 | MS.gene40511:CDS |
| TTGGCCTATCTTATCATTCA+AGG | 0.409252 | 5.3:-2095179 | None:intergenic |
| AAGCGTAATTCATCTGTGTT+TGG | 0.421907 | 5.3:+2092664 | MS.gene40511:CDS |
| AATTCAGGATCACTTTCTAA+AGG | 0.440983 | 5.3:-2095268 | None:intergenic |
| ATAATAATAAGGTGGTCTTC+TGG | 0.441088 | 5.3:-2094929 | None:intergenic |
| TACCGTTGTTCTGCACGAAC+CGG | 0.449371 | 5.3:-2092748 | None:intergenic |
| CTTTGAACAGCAGCAAGCTT+AGG | 0.449964 | 5.3:-2092688 | None:intergenic |
| GTTTCTGAATGCAGAGGACC+AGG | 0.463024 | 5.3:+2095152 | MS.gene40511:intron |
| TGCTAAATGAAGATGAATAT+GGG | 0.463822 | 5.3:+2094896 | MS.gene40511:CDS |
| GAGACCTTGAATGATAAGAT+AGG | 0.479761 | 5.3:+2095175 | MS.gene40511:CDS |
| CAGAAGGAACCTTATTTCAC+CGG | 0.501192 | 5.3:+2092729 | MS.gene40511:CDS |
| CTTATCATTCAAGGTCTCCC+TGG | 0.516050 | 5.3:-2095170 | None:intergenic |
| CTAAGCTTGCTGCTGTTCAA+AGG | 0.526007 | 5.3:+2092689 | MS.gene40511:CDS |
| CACCTTATTATTATGACGAA+GGG | 0.542517 | 5.3:+2094938 | MS.gene40511:CDS |
| ACGTACAGATATATTATCAA+TGG | 0.553012 | 5.3:-2095212 | None:intergenic |
| AAGATGAATATGGGTTTCGT+AGG | 0.554302 | 5.3:+2094905 | MS.gene40511:CDS |
| TAAGGTTCCTTCTGGTCACA+AGG | 0.558149 | 5.3:-2092720 | None:intergenic |
| TTCAGGATCACTTTCTAAAG+GGG | 0.565814 | 5.3:-2095266 | None:intergenic |
| CTTTCTAAAGGGGCAGCAGT+AGG | 0.569227 | 5.3:-2095256 | None:intergenic |
| CACCGGTTCGTGCAGAACAA+CGG | 0.572053 | 5.3:+2092746 | MS.gene40511:CDS |
| AATCAAACCTTGTGACCAGA+AGG | 0.589168 | 5.3:+2092713 | MS.gene40511:CDS |
| CCACCTTATTATTATGACGA+AGG | 0.599010 | 5.3:+2094937 | MS.gene40511:CDS |
| GTTGCTGGCTTTCTTCTGGG+TGG | 0.601949 | 5.3:+2093643 | MS.gene40511:CDS |
| TTGTGCAGTGATAACAGAGG+TGG | 0.604543 | 5.3:+2093613 | MS.gene40511:intron |
| TTATTATGACGAAGGGCTAG+AGG | 0.609430 | 5.3:+2094945 | MS.gene40511:CDS |
| TGTGCAGTGATAACAGAGGT+GGG | 0.614866 | 5.3:+2093614 | MS.gene40511:intron |
| AGATGAATATGGGTTTCGTA+GGG | 0.632129 | 5.3:+2094906 | MS.gene40511:CDS |
| AATATATCTGTACGTCTGAG+AGG | 0.656883 | 5.3:+2095220 | MS.gene40511:CDS |
| GTGCAGTGATAACAGAGGTG+GGG | 0.664089 | 5.3:+2093615 | MS.gene40511:intron |
| CCTTCGTCATAATAATAAGG+TGG | 0.668403 | 5.3:-2094937 | None:intergenic |
| TTTCTGAATGCAGAGGACCA+GGG | 0.699975 | 5.3:+2095153 | MS.gene40511:intron |
| CCTTTGTGCAGTGATAACAG+AGG | 0.741745 | 5.3:+2093610 | MS.gene40511:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTATAAACTTAATTACAA+AGG | - | chr5.3:2093998-2094017 | None:intergenic | 15.0% |
| !!! | ATATGTTTTTTTCAAACAAA+TGG | + | chr5.3:2093415-2093434 | MS.gene40511:intron | 15.0% |
| !!! | CATTTTCACTTAAAATTTAA+AGG | + | chr5.3:2093367-2093386 | MS.gene40511:intron | 15.0% |
| !!! | CTTTAAATTTTAAGTGAAAA+TGG | - | chr5.3:2093369-2093388 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGACTCGTA+TGG | + | chr5.3:2094298-2094317 | MS.gene40511:intron | 20.0% |
| !! | AAATATTGAATATAAAGCCA+AGG | - | chr5.3:2094983-2095002 | None:intergenic | 20.0% |
| !! | AATATTGAATATAAAGCCAA+GGG | - | chr5.3:2094982-2095001 | None:intergenic | 20.0% |
| !! | AGAAGATATATTATCATTGA+TGG | - | chr5.3:2094265-2094284 | None:intergenic | 20.0% |
| !!! | ATTCAATATTTTTGTGTAGT+TGG | + | chr5.3:2094992-2095011 | MS.gene40511:intron | 20.0% |
| ! | AAAAATATCATGAAAGAGAG+AGG | - | chr5.3:2093458-2093477 | None:intergenic | 25.0% |
| ! | ACGTACAGATATATTATCAA+TGG | - | chr5.3:2095215-2095234 | None:intergenic | 25.0% |
| ! | AGATAAGCTAGAACTATATA+AGG | - | chr5.3:2093154-2093173 | None:intergenic | 25.0% |
| ! | ATTTGCAATAAAACTGAAGT+AGG | - | chr5.3:2093719-2093738 | None:intergenic | 25.0% |
| ! | GTTATTATGTCTTAAGTACT+CGG | + | chr5.3:2094666-2094685 | MS.gene40511:intron | 25.0% |
| ! | TAAACTTGTGTCAATTCTTA+TGG | + | chr5.3:2094067-2094086 | MS.gene40511:intron | 25.0% |
| ! | TAAGACATAATAACAAGAGA+GGG | - | chr5.3:2094660-2094679 | None:intergenic | 25.0% |
| ! | TGCTAAATGAAGATGAATAT+GGG | + | chr5.3:2094896-2094915 | MS.gene40511:CDS | 25.0% |
| ! | TTAAGACATAATAACAAGAG+AGG | - | chr5.3:2094661-2094680 | None:intergenic | 25.0% |
| !! | ATCTTATAGGTTGCTTATTT+TGG | + | chr5.3:2093552-2093571 | MS.gene40511:intron | 25.0% |
| !! | ATGTATAGTTATTGACTGTT+TGG | + | chr5.3:2092833-2092852 | MS.gene40511:intron | 25.0% |
| !! | CAAGAATCTCTATTTACTTT+TGG | + | chr5.3:2093096-2093115 | MS.gene40511:intron | 25.0% |
| !! | GAATTAACTTTTCAAAGGAT+AGG | + | chr5.3:2094475-2094494 | MS.gene40511:intron | 25.0% |
| !! | GAGTATTGCTGTTAATATAA+TGG | - | chr5.3:2094328-2094347 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAGCTATTT+TGG | - | chr5.3:2092965-2092984 | None:intergenic | 25.0% |
| !!! | TTAAGTTTATAGTTTGCTGA+TGG | + | chr5.3:2094004-2094023 | MS.gene40511:intron | 25.0% |
| !!! | TTATTTTAGCAAAACGTTGA+AGG | + | chr5.3:2094691-2094710 | MS.gene40511:intron | 25.0% |
| !!! | TTTTTCAAACAAATGGTGAA+TGG | + | chr5.3:2093422-2093441 | MS.gene40511:intron | 25.0% |
| AATGGTACTAAACTCACATA+TGG | - | chr5.3:2094231-2094250 | None:intergenic | 30.0% | |
| AATTCAGGATCACTTTCTAA+AGG | - | chr5.3:2095271-2095290 | None:intergenic | 30.0% | |
| ACATACTATGAGCTTCTAAA+TGG | - | chr5.3:2094845-2094864 | None:intergenic | 30.0% | |
| AGAGAGCTTTCAAAAAAGTT+GGG | + | chr5.3:2094039-2094058 | MS.gene40511:intron | 30.0% | |
| ATAATAATAAGGTGGTCTTC+TGG | - | chr5.3:2094932-2094951 | None:intergenic | 30.0% | |
| ATGGTACTAAACTCACATAT+GGG | - | chr5.3:2094230-2094249 | None:intergenic | 30.0% | |
| ATTCAGGATCACTTTCTAAA+GGG | - | chr5.3:2095270-2095289 | None:intergenic | 30.0% | |
| ATTGTATTCTTAGAGAGTAG+TGG | + | chr5.3:2094133-2094152 | MS.gene40511:intron | 30.0% | |
| CACCTTATTATTATGACGAA+GGG | + | chr5.3:2094938-2094957 | MS.gene40511:CDS | 30.0% | |
| CATTAAACAAATGTTGCACT+AGG | - | chr5.3:2094444-2094463 | None:intergenic | 30.0% | |
| CTGCTAAATGAAGATGAATA+TGG | + | chr5.3:2094895-2094914 | MS.gene40511:CDS | 30.0% | |
| GGATTTCTAATTATAAGCCA+CGG | - | chr5.3:2092780-2092799 | None:intergenic | 30.0% | |
| TAGAAGCTCATAGTATGTTA+TGG | + | chr5.3:2094847-2094866 | MS.gene40511:intron | 30.0% | |
| TATCAATGGCAGAATTTAGT+TGG | - | chr5.3:2095201-2095220 | None:intergenic | 30.0% | |
| TGAAATCAGAAGATACAAGT+GGG | - | chr5.3:2093346-2093365 | None:intergenic | 30.0% | |
| TTGATGGAGATAAGTACAAA+TGG | - | chr5.3:2094249-2094268 | None:intergenic | 30.0% | |
| TTGTATATAAATGCCCTGTT+TGG | - | chr5.3:2093071-2093090 | None:intergenic | 30.0% | |
| ! | AAACAGGGCATTTATATACA+AGG | + | chr5.3:2093070-2093089 | MS.gene40511:intron | 30.0% |
| ! | AAGTATTTTCACACTAGATG+GGG | + | chr5.3:2093193-2093212 | MS.gene40511:intron | 30.0% |
| ! | ACAAGTATTTTCACACTAGA+TGG | + | chr5.3:2093191-2093210 | MS.gene40511:intron | 30.0% |
| ! | ACTACTAACTTTTCCATCTT+TGG | + | chr5.3:2094633-2094652 | MS.gene40511:intron | 30.0% |
| ! | AGGCTCTCTTTTTATAAGTT+AGG | - | chr5.3:2093978-2093997 | None:intergenic | 30.0% |
| ! | CAAGTATTTTCACACTAGAT+GGG | + | chr5.3:2093192-2093211 | MS.gene40511:intron | 30.0% |
| ! | CACAAAATGAATTTGAAGTC+GGG | + | chr5.3:2092799-2092818 | MS.gene40511:intron | 30.0% |
| ! | CCACAAAATGAATTTGAAGT+CGG | + | chr5.3:2092798-2092817 | MS.gene40511:intron | 30.0% |
| ! | CTATCCAAAAAGTATGAGAA+AGG | + | chr5.3:2093777-2093796 | MS.gene40511:intron | 30.0% |
| ! | CTCTAAGAATACAATCCAAT+GGG | - | chr5.3:2094128-2094147 | None:intergenic | 30.0% |
| ! | GAGCTGAATTAACTTTTCAA+AGG | + | chr5.3:2094470-2094489 | MS.gene40511:intron | 30.0% |
| ! | GTTGTTGTTGTTGTTGTAAT+TGG | + | chr5.3:2095095-2095114 | MS.gene40511:intron | 30.0% |
| ! | TCTCTAAGAATACAATCCAA+TGG | - | chr5.3:2094129-2094148 | None:intergenic | 30.0% |
| ! | TCTTCCTTTCTCATACTTTT+TGG | - | chr5.3:2093784-2093803 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr5.3:2095022-2095041 | MS.gene40511:intron | 30.0% |
| ! | TTTGTGTAGTTGGTATATAC+TGG | + | chr5.3:2095002-2095021 | MS.gene40511:intron | 30.0% |
| AAACAGTCACACAAAACCTA+TGG | - | chr5.3:2092885-2092904 | None:intergenic | 35.0% | |
| AAGATGAATATGGGTTTCGT+AGG | + | chr5.3:2094905-2094924 | MS.gene40511:CDS | 35.0% | |
| AAGCGTAATTCATCTGTGTT+TGG | + | chr5.3:2092664-2092683 | MS.gene40511:CDS | 35.0% | |
| AATATATCTGTACGTCTGAG+AGG | + | chr5.3:2095220-2095239 | MS.gene40511:CDS | 35.0% | |
| ACCTAGAAACTAGTCCAAAT+TGG | - | chr5.3:2093920-2093939 | None:intergenic | 35.0% | |
| AGATGAATATGGGTTTCGTA+GGG | + | chr5.3:2094906-2094925 | MS.gene40511:CDS | 35.0% | |
| AGCCCTTCGTCATAATAATA+AGG | - | chr5.3:2094943-2094962 | None:intergenic | 35.0% | |
| CAATATGCTGCATTGCAAAT+GGG | + | chr5.3:2094554-2094573 | MS.gene40511:intron | 35.0% | |
| CCACCTTATTATTATGACGA+AGG | + | chr5.3:2094937-2094956 | MS.gene40511:CDS | 35.0% | |
| CCATGTGATAAATGACTACT+CGG | + | chr5.3:2093812-2093831 | MS.gene40511:intron | 35.0% | |
| CCTAGAAACTAGTCCAAATT+GGG | - | chr5.3:2093919-2093938 | None:intergenic | 35.0% | |
| CCTTCGTCATAATAATAAGG+TGG | - | chr5.3:2094940-2094959 | None:intergenic | 35.0% | |
| GAAAGTGATCCTGAATTTGA+AGG | + | chr5.3:2095274-2095293 | MS.gene40511:CDS | 35.0% | |
| GACCAGATGTGAAGAAATAA+TGG | + | chr5.3:2093290-2093309 | MS.gene40511:intron | 35.0% | |
| GAGACCTTGAATGATAAGAT+AGG | + | chr5.3:2095175-2095194 | MS.gene40511:CDS | 35.0% | |
| GAGAGAGCTTTCAAAAAAGT+TGG | + | chr5.3:2094038-2094057 | MS.gene40511:intron | 35.0% | |
| GCAACCTATAAGATCAAGAA+AGG | - | chr5.3:2093546-2093565 | None:intergenic | 35.0% | |
| GTGAAATCAGAAGATACAAG+TGG | - | chr5.3:2093347-2093366 | None:intergenic | 35.0% | |
| TAGGAAAACAGCTTATGACA+TGG | + | chr5.3:2092914-2092933 | MS.gene40511:intron | 35.0% | |
| TATGGGGATGAATGAAGTAT+AGG | - | chr5.3:2094213-2094232 | None:intergenic | 35.0% | |
| TCAAACAAATGGTGAATGGT+CGG | + | chr5.3:2093426-2093445 | MS.gene40511:intron | 35.0% | |
| TCATTAACTACAGCCCAATT+TGG | + | chr5.3:2093903-2093922 | MS.gene40511:intron | 35.0% | |
| TGAAGTGATGAAGAGTTAGT+AGG | - | chr5.3:2094412-2094431 | None:intergenic | 35.0% | |
| TGCACCTTTCTTGATCTTAT+AGG | + | chr5.3:2093539-2093558 | MS.gene40511:intron | 35.0% | |
| TGCCATTCATAAAACAGACA+TGG | - | chr5.3:2094099-2094118 | None:intergenic | 35.0% | |
| TGGTACTAAACTCACATATG+GGG | - | chr5.3:2094229-2094248 | None:intergenic | 35.0% | |
| TTCAAACATAGCAACTAGCA+TGG | - | chr5.3:2093256-2093275 | None:intergenic | 35.0% | |
| TTGAGCTTATCTATTGCCAT+AGG | + | chr5.3:2092866-2092885 | MS.gene40511:intron | 35.0% | |
| TTGGCCTATCTTATCATTCA+AGG | - | chr5.3:2095182-2095201 | None:intergenic | 35.0% | |
| ! | CACCATTATTTCTTCACATC+TGG | - | chr5.3:2093295-2093314 | None:intergenic | 35.0% |
| ! | CCGACTTCAAATTCATTTTG+TGG | - | chr5.3:2092801-2092820 | None:intergenic | 35.0% |
| ! | CTCCATGTCTGTTTTATGAA+TGG | + | chr5.3:2094094-2094113 | MS.gene40511:intron | 35.0% |
| ! | TTCAGGATCACTTTCTAAAG+GGG | - | chr5.3:2095269-2095288 | None:intergenic | 35.0% |
| AAGTAGGAAGAAATCACCTG+AGG | - | chr5.3:2093703-2093722 | None:intergenic | 40.0% | |
| AATCAAACCTTGTGACCAGA+AGG | + | chr5.3:2092713-2092732 | MS.gene40511:CDS | 40.0% | |
| ACTCTTTGCTGAGACAAACT+AGG | - | chr5.3:2094745-2094764 | None:intergenic | 40.0% | |
| AGTGAGTTGTTTGTCCAAAC+AGG | + | chr5.3:2093054-2093073 | MS.gene40511:intron | 40.0% | |
| CCGAGTAGTCATTTATCACA+TGG | - | chr5.3:2093815-2093834 | None:intergenic | 40.0% | |
| GAAGTATAGGCGGTAATAAC+AGG | - | chr5.3:2094200-2094219 | None:intergenic | 40.0% | |
| GCAATATGCTGCATTGCAAA+TGG | + | chr5.3:2094553-2094572 | MS.gene40511:intron | 40.0% | |
| GTGACTGTTTGAGAGAACTT+AGG | + | chr5.3:2092895-2092914 | MS.gene40511:intron | 40.0% | |
| GTGAGTTGTTTGTCCAAACA+GGG | + | chr5.3:2093055-2093074 | MS.gene40511:intron | 40.0% | |
| TGAATGGCATGTAAACCCAT+TGG | + | chr5.3:2094110-2094129 | MS.gene40511:intron | 40.0% | |
| TGCACAAAGGAGACAGTTAA+TGG | - | chr5.3:2093600-2093619 | None:intergenic | 40.0% | |
| TTATTATGACGAAGGGCTAG+AGG | + | chr5.3:2094945-2094964 | MS.gene40511:CDS | 40.0% | |
| ! | CAGAAGGAACCTTATTTCAC+CGG | + | chr5.3:2092729-2092748 | MS.gene40511:CDS | 40.0% |
| ! | CGCTTTGTTGAAAAAAGCTC+AGG | - | chr5.3:2092649-2092668 | None:intergenic | 40.0% |
| ! | CTTTTGAATGCTTCGAGCAT+TGG | + | chr5.3:2093501-2093520 | MS.gene40511:intron | 40.0% |
| !! | AGTTTGCTGATGGAAGAGTT+AGG | + | chr5.3:2094014-2094033 | MS.gene40511:intron | 40.0% |
| !! | CCCAATTTGGACTAGTTTCT+AGG | + | chr5.3:2093916-2093935 | MS.gene40511:intron | 40.0% |
| !! | TATGCTGTTTCTGAATGCAG+AGG | + | chr5.3:2095146-2095165 | MS.gene40511:intron | 40.0% |
| AACAAGAGAGGGTCCAAAGA+TGG | - | chr5.3:2094649-2094668 | None:intergenic | 45.0% | |
| ACGAAGGGCTAGAGGTAATT+TGG | + | chr5.3:2094953-2094972 | MS.gene40511:intron | 45.0% | |
| CCTCTGTTATCACTGCACAA+AGG | - | chr5.3:2093613-2093632 | None:intergenic | 45.0% | |
| CCTTTGTGCAGTGATAACAG+AGG | + | chr5.3:2093610-2093629 | MS.gene40511:intron | 45.0% | |
| CGGTGAAATAAGGTTCCTTC+TGG | - | chr5.3:2092731-2092750 | None:intergenic | 45.0% | |
| CTTATCATTCAAGGTCTCCC+TGG | - | chr5.3:2095173-2095192 | None:intergenic | 45.0% | |
| CTTTGAACAGCAGCAAGCTT+AGG | - | chr5.3:2092691-2092710 | None:intergenic | 45.0% | |
| GATACAAGTGGGACATACAG+AGG | - | chr5.3:2093335-2093354 | None:intergenic | 45.0% | |
| GGGGATGAATGAAGTATAGG+CGG | - | chr5.3:2094210-2094229 | None:intergenic | 45.0% | |
| TAAGGTTCCTTCTGGTCACA+AGG | - | chr5.3:2092723-2092742 | None:intergenic | 45.0% | |
| TGATAACAGAGGTGGGGATT+TGG | + | chr5.3:2093621-2093640 | MS.gene40511:CDS | 45.0% | |
| TGTGCAGTGATAACAGAGGT+GGG | + | chr5.3:2093614-2093633 | MS.gene40511:intron | 45.0% | |
| TTGTGCAGTGATAACAGAGG+TGG | + | chr5.3:2093613-2093632 | MS.gene40511:intron | 45.0% | |
| TTTCTGAATGCAGAGGACCA+GGG | + | chr5.3:2095153-2095172 | MS.gene40511:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5.3:2095071-2095090 | None:intergenic | 45.0% |
| ! | AGAGGTAATTTGGCTTCCCT+TGG | + | chr5.3:2094963-2094982 | MS.gene40511:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5.3:2095072-2095091 | None:intergenic | 45.0% |
| !! | CTAAGCTTGCTGCTGTTCAA+AGG | + | chr5.3:2092689-2092708 | MS.gene40511:CDS | 45.0% |
| !! | GGCTTATGTTTTTGCTCCTC+AGG | + | chr5.3:2093684-2093703 | MS.gene40511:CDS | 45.0% |
| !! | TTGGTTGCTGGCTTTCTTCT+GGG | + | chr5.3:2093640-2093659 | MS.gene40511:CDS | 45.0% |
| !! | TTTGGTTGCTGGCTTTCTTC+TGG | + | chr5.3:2093639-2093658 | MS.gene40511:CDS | 45.0% |
| !!! | CTTCTGGGTGGTGCTATTTT+CGG | + | chr5.3:2093655-2093674 | MS.gene40511:CDS | 45.0% |
| !!! | GCTGGTTGGGTGCATTTTTT+GGG | + | chr5.3:2094170-2094189 | MS.gene40511:intron | 45.0% |
| !!! | TGCTGGTTGGGTGCATTTTT+TGG | + | chr5.3:2094169-2094188 | MS.gene40511:intron | 45.0% |
| !!! | TGGTGCTATTTTCGGAACTC+TGG | + | chr5.3:2093663-2093682 | MS.gene40511:CDS | 45.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr5.3:2095070-2095089 | MS.gene40511:intron | 50.0% | |
| CTGCACGAACCGGTGAAATA+AGG | - | chr5.3:2092741-2092760 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr5.3:2095067-2095086 | None:intergenic | 50.0% | |
| GAACAACGGTATGTCATCCG+TGG | + | chr5.3:2092760-2092779 | MS.gene40511:intron | 50.0% | |
| GTGCAGTGATAACAGAGGTG+GGG | + | chr5.3:2093615-2093634 | MS.gene40511:intron | 50.0% | |
| GTTTCTGAATGCAGAGGACC+AGG | + | chr5.3:2095152-2095171 | MS.gene40511:intron | 50.0% | |
| TACCGTTGTTCTGCACGAAC+CGG | - | chr5.3:2092751-2092770 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr5.3:2095073-2095092 | None:intergenic | 50.0% |
| ! | CTTTCTAAAGGGGCAGCAGT+AGG | - | chr5.3:2095259-2095278 | None:intergenic | 50.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr5.3:2095059-2095078 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr5.3:2095058-2095077 | MS.gene40511:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr5.3:2095065-2095084 | MS.gene40511:intron | 55.0% | |
| TAGAGAGTAGTGGCGCCTCT+GGG | + | chr5.3:2094143-2094162 | MS.gene40511:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr5.3:2095059-2095078 | MS.gene40511:intron | 55.0% | |
| TTAGAGAGTAGTGGCGCCTC+TGG | + | chr5.3:2094142-2094161 | MS.gene40511:intron | 55.0% | |
| ! | AGAGGTGGGGATTTGGTTGC+TGG | + | chr5.3:2093628-2093647 | MS.gene40511:CDS | 55.0% |
| !! | CACCGGTTCGTGCAGAACAA+CGG | + | chr5.3:2092746-2092765 | MS.gene40511:CDS | 55.0% |
| !! | GTTGCTGGCTTTCTTCTGGG+TGG | + | chr5.3:2093643-2093662 | MS.gene40511:CDS | 55.0% |
| ACCCAACCAGCACAGCCCAG+AGG | - | chr5.3:2094161-2094180 | None:intergenic | 65.0% | |
| !! | GCCTCTGGGCTGTGCTGGTT+GGG | + | chr5.3:2094157-2094176 | MS.gene40511:intron | 65.0% |
| ! | CGCCTCTGGGCTGTGCTGGT+TGG | + | chr5.3:2094156-2094175 | MS.gene40511:intron | 70.0% |
| GTGGCGCCTCTGGGCTGTGC+TGG | + | chr5.3:2094152-2094171 | MS.gene40511:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 2092637 | 2095303 | 2092637 | ID=MS.gene40511 |
| chr5.3 | mRNA | 2092637 | 2095303 | 2092637 | ID=MS.gene40511.t1;Parent=MS.gene40511 |
| chr5.3 | exon | 2092637 | 2092767 | 2092637 | ID=MS.gene40511.t1.exon1;Parent=MS.gene40511.t1 |
| chr5.3 | CDS | 2092637 | 2092767 | 2092637 | ID=cds.MS.gene40511.t1;Parent=MS.gene40511.t1 |
| chr5.3 | exon | 2093621 | 2093705 | 2093621 | ID=MS.gene40511.t1.exon2;Parent=MS.gene40511.t1 |
| chr5.3 | CDS | 2093621 | 2093705 | 2093621 | ID=cds.MS.gene40511.t1;Parent=MS.gene40511.t1 |
| chr5.3 | exon | 2094883 | 2094966 | 2094883 | ID=MS.gene40511.t1.exon3;Parent=MS.gene40511.t1 |
| chr5.3 | CDS | 2094883 | 2094966 | 2094883 | ID=cds.MS.gene40511.t1;Parent=MS.gene40511.t1 |
| chr5.3 | exon | 2095166 | 2095303 | 2095166 | ID=MS.gene40511.t1.exon4;Parent=MS.gene40511.t1 |
| chr5.3 | CDS | 2095166 | 2095303 | 2095166 | ID=cds.MS.gene40511.t1;Parent=MS.gene40511.t1 |
| Gene Sequence |
| Protein sequence |
