AlfalfaGEDB | MS.gene62154

M. sativa cultivar XinJiangDaYe / MS.gene62154

KEGG: K01759
GO: GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0016829 GO:0016846 GO:0043167 GO:0043169 GO:0046872
PFAM: PF00903.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62154.t1	RHN64982.1	97.9	281	6	0	1	281	2	282	5.40E-157	563.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62154.t1	O65398	77.2	276	63	0	6	281	8	283	5.9e-128	458.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62154.t1	G7JJ88	97.9	281	6	0	1	281	1	281	3.9e-157	563.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene62154	0.802624	5.13E-49	-1.69E-46
MS.gene049195	MS.gene62154	0.805916	1.06E-49	-1.69E-46
MS.gene049260	MS.gene62154	0.843175	1.65E-58	-1.69E-46
MS.gene04933	MS.gene62154	0.830768	2.44E-55	-1.69E-46
MS.gene049351	MS.gene62154	0.806446	8.20E-50	-1.69E-46
MS.gene049599	MS.gene62154	-0.808638	2.81E-50	-1.69E-46
MS.gene049681	MS.gene62154	0.822366	2.46E-53	-1.69E-46
MS.gene049758	MS.gene62154	0.862837	3.82E-64	-1.69E-46
MS.gene050099	MS.gene62154	0.810039	1.41E-50	-1.69E-46
MS.gene050397	MS.gene62154	0.831246	1.86E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62154.t1	MTR_4g132270	97.865	281	6	0	1	281	24	304	0.0	563
MS.gene62154.t1	MTR_4g132270	97.865	281	6	0	1	281	1	281	0.0	563
MS.gene62154.t1	MTR_4g132260	96.441	281	10	0	1	281	1	281	0.0	556
MS.gene62154.t1	MTR_2g023500	78.623	276	59	0	6	281	12	287	1.76e-166	462
MS.gene62154.t1	MTR_8g102980	70.290	276	78	1	6	281	76	347	1.10e-146	415
MS.gene62154.t1	MTR_8g102980	69.173	266	78	1	6	271	76	337	1.09e-139	397
MS.gene62154.t1	MTR_8g102980	47.200	125	62	1	148	272	88	208	3.98e-31	119
MS.gene62154.t1	MTR_6g087120	61.957	276	101	1	6	281	77	348	1.06e-131	377
MS.gene62154.t1	MTR_3g110185	63.768	276	96	1	6	281	550	821	9.28e-127	380
MS.gene62154.t1	MTR_4g039890	61.506	239	83	2	31	269	7	236	1.32e-107	312

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62154.t1	AT1G11840	76.325	283	65	1	1	281	40	322	8.06e-165	460
MS.gene62154.t1	AT1G11840	76.325	283	65	1	1	281	1	283	3.50e-164	457
MS.gene62154.t1	AT1G11840	76.325	283	65	1	1	281	1	283	3.50e-164	457
MS.gene62154.t1	AT1G11840	76.325	283	65	1	1	281	1	283	3.50e-164	457
MS.gene62154.t1	AT1G11840	76.325	283	65	1	1	281	1	283	3.50e-164	457
MS.gene62154.t1	AT1G67280	68.478	276	83	1	6	281	79	350	4.79e-143	406
MS.gene62154.t1	AT1G67280	69.173	266	78	1	16	281	1	262	1.18e-138	391
MS.gene62154.t1	AT1G11840	73.874	222	56	1	1	220	1	222	1.94e-122	349
MS.gene62154.t1	AT1G11840	43.651	126	67	1	146	271	18	139	3.20e-28	108
MS.gene62154.t1	AT1G11840	44.048	84	47	0	16	99	148	231	4.14e-17	79.0

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Find 65 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACATGAAGCAAGCGA+CGG	0.691881	8.4:-1819686	None:intergenic
AACCTAGTCACACAAGAGCT+TGG	0.504613	8.4:+1822438	MS.gene62154:CDS
AACTGTTATTGCCTTTGTGA+AGG	0.515188	8.4:+1821359	MS.gene62154:CDS
AAGCGACGGTTGTCTTTATT+TGG	0.212475	8.4:-1819672	None:intergenic
AAGGGAGGCTGGTCCAGTTC+AGG	0.391742	8.4:+1821329	MS.gene62154:CDS
ACAGTTGTCCCACCCTGAAC+TGG	0.400562	8.4:-1821342	None:intergenic
ACTTCGTATGATGTTGGAGA+TGG	0.612590	8.4:+1821150	MS.gene62154:CDS
AGCTTGGAGGGAAGATCACT+CGG	0.567340	8.4:+1822454	MS.gene62154:CDS
AGGCTGGTCCAGTTCAGGGT+GGG	0.552550	8.4:+1821334	MS.gene62154:CDS
AGGGAGGCTGGTCCAGTTCA+GGG	0.464869	8.4:+1821330	MS.gene62154:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATACATTACATTACAGACC+AGG	+	chr8.4:1821645-1821664	MS.gene62154:intron	30.0%
AATCATATCATACTTATGCG+AGG	-	chr8.4:1821740-1821759	None:intergenic	30.0%
ACAATCCAAGACATATTTCT+AGG	+	chr8.4:1821498-1821517	MS.gene62154:intron	30.0%
ACATGATGTTAGAAACCTAT+AGG	-	chr8.4:1822784-1822803	None:intergenic	30.0%
AGAAAATGAGTCAGTTATTC+CGG	+	chr8.4:1820373-1820392	MS.gene62154:intron	30.0%
AGTACACTATTGCTATACTT+GGG	+	chr8.4:1822178-1822197	MS.gene62154:intron	30.0%
ATCATATTTACATAGGCTCT+GGG	+	chr8.4:1821952-1821971	MS.gene62154:intron	30.0%
GAATTTAGATGATTAGGAAG+GGG	-	chr8.4:1820696-1820715	None:intergenic	30.0%
GCACAACTAAGTTAAATAAG+AGG	-	chr8.4:1821011-1821030	None:intergenic	30.0%
GGAATTTAGATGATTAGGAA+GGG	-	chr8.4:1820697-1820716	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	1819648	1822862	1819648	ID=MS.gene62154
chr8.4	mRNA	1819648	1822862	1819648	ID=MS.gene62154.t1;Parent=MS.gene62154
chr8.4	exon	1819648	1819739	1819648	ID=MS.gene62154.t1.exon1;Parent=MS.gene62154.t1
chr8.4	CDS	1819648	1819739	1819648	ID=cds.MS.gene62154.t1;Parent=MS.gene62154.t1
chr8.4	exon	1819829	1819953	1819829	ID=MS.gene62154.t1.exon2;Parent=MS.gene62154.t1
chr8.4	CDS	1819829	1819953	1819829	ID=cds.MS.gene62154.t1;Parent=MS.gene62154.t1
chr8.4	exon	1821139	1821203	1821139	ID=MS.gene62154.t1.exon3;Parent=MS.gene62154.t1
chr8.4	CDS	1821139	1821203	1821139	ID=cds.MS.gene62154.t1;Parent=MS.gene62154.t1
chr8.4	exon	1821282	1821494	1821282	ID=MS.gene62154.t1.exon4;Parent=MS.gene62154.t1
chr8.4	CDS	1821282	1821494	1821282	ID=cds.MS.gene62154.t1;Parent=MS.gene62154.t1
chr8.4	exon	1821967	1822014	1821967	ID=MS.gene62154.t1.exon5;Parent=MS.gene62154.t1
chr8.4	CDS	1821967	1822014	1821967	ID=cds.MS.gene62154.t1;Parent=MS.gene62154.t1
chr8.4	exon	1822180	1822287	1822180	ID=MS.gene62154.t1.exon6;Parent=MS.gene62154.t1
chr8.4	CDS	1822180	1822287	1822180	ID=cds.MS.gene62154.t1;Parent=MS.gene62154.t1
chr8.4	exon	1822393	1822545	1822393	ID=MS.gene62154.t1.exon7;Parent=MS.gene62154.t1
chr8.4	CDS	1822393	1822545	1822393	ID=cds.MS.gene62154.t1;Parent=MS.gene62154.t1
chr8.4	exon	1822821	1822862	1822821	ID=MS.gene62154.t1.exon8;Parent=MS.gene62154.t1
chr8.4	CDS	1822821	1822862	1822821	ID=cds.MS.gene62154.t1;Parent=MS.gene62154.t1

Gene Sequence

>MS.gene62154

ATGGCTGAGATTGATTTGGAATGGCCAAATAAAGACAACCGTCGCTTGCTTCATGTTGTTTATCGTGTTGGTGACCTTGAACGCACCATTAAGTATGCTTTTTTTGTTAGATGATTGCATTGCATGCTTAATATACATACCATGCATCATCATATTCATGTCTTGGATATGGTTCTTTCAGGTTTTATACTGAGGCTCTTGGGATGAAACTTTTGAGGCAGAGAGATGTTCCTGAGGAGAAATATGCCAATGCTTTTCTTGGATTTGGCGATGAACATTCCCATTTTGTTGTTGAATTAACATATAGTATGTTACTCTGCTGCTTACCCTTTAATTTCCTTTTTATATCTATTATTTCTCTTCATTAGTTTTAGGATTAATTATCTTTTTACTTTTTAGTCCCTATTAAATTATGATTGTCCCTTTAATTTCCTTTTTATATCTATTATTTCTCTTCATTAGTTTTAGGATTAATTATCTTTTTACTTTTTAGTCTCTATTAAATTATGATTGTTTAAGCTTAGTTACTACTACCTCCGTCCCAATTTAATTTACACAATTTTGTTTTTCACACATATTAAGAAAAATGTATAAATAAAGGGGAAAGTGGAATATATTGTATTGGGAATGATAAAAGTAGTATTATTTAGTGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGGGTCAGTTATTTTGGGACACTTTTTTTAGAAAATGAGTCAGTTATTCCGGGACGGAGGGAGTATGTAGTTTTATTTTATTTTTAATTTTTGTTTATCCTTTTTAAAAATGATTGTTTTTAGTCACTTACAAAAGATGAGTGTTTTTTTCTTTTGGTTTCAAAGAATCTAGCGACAAAAACTCACACACTTTTTTTTTATCAAAGCTAAGAAAATAAATTGCGAACCAGAATTAAGGCCTGAACCTTTTTACACAAAAGAAATGAAGGAAGCCTAAGGCTATCCTTTAGCAACAAAAGAACAAAAACTTAGAGGAGCCTGCCATGATAAGCAAAGGGCTGCAAACACACCCCTTCCTAATCATCTAAATTCCCAAAAGCAAAATCATACTGCAGGAGTGGTAGATTTACCCTTCTTGGAGCAGGTAAGGACACTAAGTGCAGAGAAGTGGAGAATTGCGGATTAGAACTTGCTTCCCAACACATCAAATATCCCTCCAGCCTTTTACCGTTTGAACCGTACTTATGGGACAAAAATGAGTGTTTTTAGTCAAGAAAATAGGACTATAATTGAACAATTTTATGTAGGACTAAACTTGAAAAATTGTATATTTTCTAAGGACTTTTTGTATGGATGAATTTTATAGGGAATAAAAACATATTTACCTCTTATTTAACTTAGTTGTGCGGAATTAGGTACACTTCTTTTGATGTTATTATTTTTTTTTTTCTTATCACATGGATTTAATTTCTTTGAAGTCTTGTAAACTATTTAATTACATGATCTTATTGTTAGATTATGGAGTGACTTCGTATGATGTTGGAGATGGCTTTGGACATTTTGCAATTGCTACTCAAGATGTAAGAAAAGAGTATTCTAACTTCACATAAGTTTGTGATTTGTGAAGAGAATGAACATTGCTTCAATTTTTATTTTAGGTTTACAAATTGGTTGAGCACATTCGTGCTAAAGGTGGAAACATCACAAGGGAGGCTGGTCCAGTTCAGGGTGGGACAACTGTTATTGCCTTTGTGAAGGATCCTGATGGCTACACTTTTGCACTTGTCCAAAGACCTATAGTTCACGACCCATTCTGTCAAATAATGCTTCGCGTTGGTGATTTAGAACGCGCCATAAAGTTTTATGAAAAGGTAACAATCCAAGACATATTTCTAGGAAGAACAAGTATGATATGTTTTTTTTTTTTAAGCAAAAATTCATTAAATTAAATAAAACACAACAGATACAAAGCCTGGGGGACATTAGACCCTGACCAGGTACAACCCAAATGGGAATAACACAATACATTACATTACAGACCAGGTAGATCAACCTAATTAATCCTAATATAAGGAGCACTCCTCACGAACGCAACCCAGCACACTGCCACACTCCTCGCATAAGTATGATATGATTTGATCTCAATTATTCAATGTTTTTTATGTGCATTTTACGTGTGTGACGAGTCGAGATTAGCAGTTGTACTATTTGATAGCTTTTGTTTGTATATACAAAATAGAATCAGAGAATTGCATTTGATGAGTTATGATTTAATTATGCATTATTTAAACCAAATGTGGTTTATTAACCGAGGCTATGTTCTTATGGATCATATTTACATAGGCTCTGGGCTTGAAGGTGGTGAGGAAGGTTGATAATCCTGAGAACAAGGTGATGTTTCCTCATGCCTCTTTCTTTGCAATGTAGTTATTAGCAGTGACATCTTTTATGTCAAAGCCATTCTAATCAGAAAGCATAGATTATACAACTACAATAGCGCACATAAATTGTCTAAAATTAACATAGAAACGCATGTTTTTGTTGCATGTCGTACAGTACACTATTGCTATACTTGGGTATAAAGAGGAGAACGAAGCAACTGTGTTGGAGTTGACATATAATTATGGTGTCACGGAATATTCTAAGGGAACTGCTTATGCACAGGTTAGTTCACAAGTTAAATTATACGACCTTGAAGCTTAAACTAGCTTTCTGCGCATCTCTGTACGATTAATGGTAAAATATATATGTTTCATGTGTCTATAACAGATTGCTATTGGTACTGATGATGTCTACAAGAGTGCTGATGTAGTCAACCTAGTCACACAAGAGCTTGGAGGGAAGATCACTCGGCAACCAGGGCCAATTCCGGGCCTTAACACAAAAGTCGTTTCTTTTTTAGATCCAGATGGATGGAAAACTGTAAGTTCATTTTTCGCTTTGCTTCTATTCAGGAGTATGATTGCAATTTATATCTATTTAATTGTATTTGTGGAAAGCCTCTTTCATTTTTGTAAAATTGTATATTTATTTCCAAATTCTCATTATCTTTCTTCCTCCCGTTATCATCAAATTCTTCACCTTCCTTTTCCTCCAAACTCTCGTACAAAACCTTAGTGGTCGGTCAGTGAATGACCACATGACAAATGCATCAATGCCTATAGGTTTCTAACATCATGTTAATTTTGTGTGTGCAGGTGTTGGTTGACAATGAAGATTTCCTGAAGGAACTGGAGTGA

Protein sequence

>MS.gene62154.t1

MAEIDLEWPNKDNRRLLHVVYRVGDLERTIKFYTEALGMKLLRQRDVPEEKYANAFLGFGDEHSHFVVELTYNYGVTSYDVGDGFGHFAIATQDVYKLVEHIRAKGGNITREAGPVQGGTTVIAFVKDPDGYTFALVQRPIVHDPFCQIMLRVGDLERAIKFYEKALGLKVVRKVDNPENKYTIAILGYKEENEATVLELTYNYGVTEYSKGTAYAQIAIGTDDVYKSADVVNLVTQELGGKITRQPGPIPGLNTKVVSFLDPDGWKTVLVDNEDFLKELE