Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78464.t1 | XP_003623219.2 | 98.9 | 272 | 3 | 0 | 1 | 272 | 244 | 515 | 3.50E-145 | 524.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78464.t1 | Q8S4F6 | 73.7 | 270 | 71 | 0 | 1 | 270 | 240 | 509 | 1.4e-110 | 400.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78464.t1 | G7L6J3 | 98.9 | 272 | 3 | 0 | 1 | 272 | 244 | 515 | 2.5e-145 | 524.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene78464 | 0.872951 | 2.14E-67 | -1.69E-46 |
| MS.gene049661 | MS.gene78464 | 0.819363 | 1.21E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene78464 | 0.820371 | 7.10E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene78464 | 0.814518 | 1.48E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene78464 | 0.862608 | 4.49E-64 | -1.69E-46 |
| MS.gene050397 | MS.gene78464 | 0.824741 | 6.85E-54 | -1.69E-46 |
| MS.gene050516 | MS.gene78464 | 0.80367 | 3.12E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene78464 | 0.808575 | 2.89E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene78464 | 0.824707 | 6.98E-54 | -1.69E-46 |
| MS.gene051255 | MS.gene78464 | 0.84314 | 1.68E-58 | -1.69E-46 |
| MS.gene051360 | MS.gene78464 | 0.830493 | 2.85E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene78464 | 0.829405 | 5.24E-55 | -1.69E-46 |
| MS.gene051877 | MS.gene78464 | 0.804486 | 2.11E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene78464 | -0.826117 | 3.24E-54 | -1.69E-46 |
| MS.gene052025 | MS.gene78464 | 0.804586 | 2.01E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene78464 | 0.817001 | 4.13E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene78464 | 0.835155 | 1.98E-56 | -1.69E-46 |
| MS.gene052207 | MS.gene78464 | 0.825046 | 5.80E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene78464 | 0.857505 | 1.56E-62 | -1.69E-46 |
| MS.gene052310 | MS.gene78464 | 0.804225 | 2.39E-49 | -1.69E-46 |
| MS.gene052322 | MS.gene78464 | 0.82178 | 3.37E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene78464 | 0.805364 | 1.38E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene78464 | 0.835233 | 1.89E-56 | -1.69E-46 |
| MS.gene052982 | MS.gene78464 | 0.80314 | 4.02E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene78464 | 0.869856 | 2.26E-66 | -1.69E-46 |
| MS.gene053836 | MS.gene78464 | 0.829762 | 4.29E-55 | -1.69E-46 |
| MS.gene054010 | MS.gene78464 | 0.847458 | 1.14E-59 | -1.69E-46 |
| MS.gene054011 | MS.gene78464 | 0.859673 | 3.52E-63 | -1.69E-46 |
| MS.gene054012 | MS.gene78464 | 0.850889 | 1.27E-60 | -1.69E-46 |
| MS.gene054013 | MS.gene78464 | 0.845804 | 3.23E-59 | -1.69E-46 |
| MS.gene054123 | MS.gene78464 | 0.814007 | 1.92E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene78464 | 0.803957 | 2.72E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene78464 | 0.817013 | 4.11E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene78464 | 0.820571 | 6.39E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene78464 | 0.859535 | 3.87E-63 | -1.69E-46 |
| MS.gene055390 | MS.gene78464 | 0.843802 | 1.12E-58 | -1.69E-46 |
| MS.gene055412 | MS.gene78464 | 0.805061 | 1.60E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene78464 | 0.841149 | 5.66E-58 | -1.69E-46 |
| MS.gene055428 | MS.gene78464 | 0.826699 | 2.35E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene78464 | 0.879883 | 8.66E-70 | -1.69E-46 |
| MS.gene05602 | MS.gene78464 | 0.806115 | 9.62E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene78464 | 0.8294 | 5.26E-55 | -1.69E-46 |
| MS.gene056407 | MS.gene78464 | 0.801344 | 9.41E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene78464 | 0.837746 | 4.33E-57 | -1.69E-46 |
| MS.gene056659 | MS.gene78464 | 0.845696 | 3.46E-59 | -1.69E-46 |
| MS.gene056796 | MS.gene78464 | 0.824656 | 7.17E-54 | -1.69E-46 |
| MS.gene056902 | MS.gene78464 | 0.848608 | 5.50E-60 | -1.69E-46 |
| MS.gene056931 | MS.gene78464 | 0.81151 | 6.75E-51 | -1.69E-46 |
| MS.gene056933 | MS.gene78464 | 0.805546 | 1.27E-49 | -1.69E-46 |
| MS.gene056935 | MS.gene78464 | 0.801043 | 1.08E-48 | -1.69E-46 |
| MS.gene05702 | MS.gene78464 | 0.800869 | 1.18E-48 | -1.69E-46 |
| MS.gene057121 | MS.gene78464 | 0.80549 | 1.30E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene78464 | 0.820711 | 5.94E-53 | -1.69E-46 |
| MS.gene057245 | MS.gene78464 | 0.808757 | 2.65E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene78464 | 0.820458 | 6.79E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene78464 | 0.813916 | 2.01E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene78464 | 0.816123 | 6.50E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene78464 | 0.820162 | 7.93E-53 | -1.69E-46 |
| MS.gene058082 | MS.gene78464 | 0.823414 | 1.40E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene78464 | 0.85633 | 3.46E-62 | -1.69E-46 |
| MS.gene058142 | MS.gene78464 | 0.81447 | 1.52E-51 | -1.69E-46 |
| MS.gene058233 | MS.gene78464 | 0.808337 | 3.26E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene78464 | 0.803106 | 4.08E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene78464 | 0.846875 | 1.65E-59 | -1.69E-46 |
| MS.gene058700 | MS.gene78464 | 0.804305 | 2.30E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene78464 | 0.827986 | 1.16E-54 | -1.69E-46 |
| MS.gene058787 | MS.gene78464 | 0.801733 | 7.83E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene78464 | 0.831687 | 1.45E-55 | -1.69E-46 |
| MS.gene058948 | MS.gene78464 | 0.825745 | 3.96E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene78464 | 0.827026 | 1.96E-54 | -1.69E-46 |
| MS.gene059294 | MS.gene78464 | 0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene78464 | 0.832573 | 8.75E-56 | -1.69E-46 |
| MS.gene059518 | MS.gene78464 | 0.812999 | 3.19E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene78464 | 0.803683 | 3.10E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene78464 | 0.838723 | 2.43E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene78464 | 0.840054 | 1.10E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene78464 | 0.840031 | 1.11E-57 | -1.69E-46 |
| MS.gene059711 | MS.gene78464 | 0.801003 | 1.11E-48 | -1.69E-46 |
| MS.gene05984 | MS.gene78464 | 0.857638 | 1.42E-62 | -1.69E-46 |
| MS.gene059974 | MS.gene78464 | 0.824226 | 9.05E-54 | -1.69E-46 |
| MS.gene06037 | MS.gene78464 | 0.836089 | 1.15E-56 | -1.69E-46 |
| MS.gene060559 | MS.gene78464 | 0.812386 | 4.35E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene78464 | 0.826147 | 3.18E-54 | -1.69E-46 |
| MS.gene060986 | MS.gene78464 | 0.801001 | 1.11E-48 | -1.69E-46 |
| MS.gene061049 | MS.gene78464 | 0.836878 | 7.23E-57 | -1.69E-46 |
| MS.gene061154 | MS.gene78464 | 0.814163 | 1.77E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78464.t1 | MTR_7g067340 | 98.897 | 272 | 3 | 0 | 1 | 272 | 244 | 515 | 0.0 | 556 |
| MS.gene78464.t1 | MTR_4g015260 | 80.297 | 269 | 53 | 0 | 1 | 269 | 106 | 374 | 2.11e-164 | 461 |
| MS.gene78464.t1 | MTR_4g015260 | 80.297 | 269 | 53 | 0 | 1 | 269 | 241 | 509 | 6.73e-163 | 462 |
| MS.gene78464.t1 | MTR_4g015250 | 70.588 | 34 | 10 | 0 | 213 | 246 | 1 | 34 | 7.58e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78464.t1 | AT5G01220 | 76.296 | 270 | 64 | 0 | 1 | 270 | 240 | 509 | 7.31e-156 | 444 |
| MS.gene78464.t1 | AT5G01220 | 81.667 | 180 | 33 | 0 | 1 | 180 | 240 | 419 | 2.33e-104 | 310 |
Find 73 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACTTGGCTTCGTTGTTT+TGG | 0.243869 | 7.1:+34259867 | MS.gene78464:CDS |
| CTTGGAGTTGAAAAGAGTTT+AGG | 0.324101 | 7.1:+34258711 | MS.gene78464:CDS |
| ACAATGCTGCCATCTGGTTC+TGG | 0.350326 | 7.1:+34260136 | MS.gene78464:CDS |
| CAGCTAACAAGATTCGTCTT+TGG | 0.369310 | 7.1:+34258511 | MS.gene78464:intron |
| TGATCTGCAGGAATAATATC+TGG | 0.372207 | 7.1:-34259940 | None:intergenic |
| ATGAAAGCAACTCGAGCTTC+AGG | 0.388762 | 7.1:-34258893 | None:intergenic |
| GCAGTATTCACAGGAATGTT+AGG | 0.393518 | 7.1:+34259781 | MS.gene78464:CDS |
| TCAACTCTTTGTCGAACAAA+AGG | 0.396746 | 7.1:-34260029 | None:intergenic |
| TCTGGTTCTGGCGCAAGAAA+AGG | 0.398886 | 7.1:+34260148 | MS.gene78464:CDS |
| CAACTCTTTGTCGAACAAAA+GGG | 0.406801 | 7.1:-34260028 | None:intergenic |
| ACGTTTACTGATCCATTGTA+AGG | 0.414214 | 7.1:-34260187 | None:intergenic |
| TGAACTATCAAGGGTTTCTC+AGG | 0.420730 | 7.1:-34258678 | None:intergenic |
| ATAGTTCATGTTGGACGGCT+TGG | 0.424140 | 7.1:+34258693 | MS.gene78464:CDS |
| AAAAGCTGCACGTAATGAAA+TGG | 0.426643 | 7.1:+34260065 | MS.gene78464:CDS |
| CTGGTGCCATCTGTTGCCAT+TGG | 0.430492 | 7.1:+34258322 | MS.gene78464:CDS |
| GCAGATCAAGAAGGTAAAAC+AGG | 0.441468 | 7.1:+34259955 | MS.gene78464:CDS |
| ACGAAATGCGATTAAGACTA+AGG | 0.456016 | 7.1:+34258580 | MS.gene78464:CDS |
| TGGTGCCATCTGTTGCCATT+GGG | 0.458535 | 7.1:+34258323 | MS.gene78464:CDS |
| AACAATACAATGCTGCCATC+TGG | 0.461214 | 7.1:+34260130 | MS.gene78464:CDS |
| ACAGGTTATCTCTATAATCC+AGG | 0.464651 | 7.1:+34259973 | MS.gene78464:CDS |
| CCGGCGCGTGCTGCCACCAC+AGG | 0.469518 | 7.1:-34259910 | None:intergenic |
| CCGTCCAACATGAACTATCA+AGG | 0.479820 | 7.1:-34258688 | None:intergenic |
| CGAGTTGCTTTCATCGGAGA+TGG | 0.480961 | 7.1:+34258902 | MS.gene78464:CDS |
| CAACAGATGGCACCAGAGTC+AGG | 0.483672 | 7.1:-34258315 | None:intergenic |
| CTATAGTTAACTTGTGGTGA+TGG | 0.484123 | 7.1:-34260216 | None:intergenic |
| CTGGTTCTGGCGCAAGAAAA+GGG | 0.485575 | 7.1:+34260149 | MS.gene78464:CDS |
| AAGCAGTCTTCAAGATCCCC+TGG | 0.497573 | 7.1:-34259991 | None:intergenic |
| AACATTCCTGTGAATACTGC+AGG | 0.502201 | 7.1:-34259778 | None:intergenic |
| GAGCTAGAGAAAATGTTTGA+AGG | 0.513757 | 7.1:+34259751 | MS.gene78464:CDS |
| CCTTCAGAGTCAGAAACACT+TGG | 0.519010 | 7.1:+34259853 | MS.gene78464:CDS |
| AATAATATCTGGAATGCCTC+CGG | 0.525217 | 7.1:-34259929 | None:intergenic |
| CCTTGATAGTTCATGTTGGA+CGG | 0.532119 | 7.1:+34258688 | MS.gene78464:CDS |
| CTCTCTCAAGCATATGCTAG+TGG | 0.533783 | 7.1:+34259814 | MS.gene78464:CDS |
| CAGAGCAGCTGACCTGACTC+TGG | 0.538024 | 7.1:+34258303 | MS.gene78464:CDS |
| CGTGTGAACGGAATCGTGGA+TGG | 0.542069 | 7.1:-34258560 | None:intergenic |
| CAGGTTATCTCTATAATCCA+GGG | 0.542485 | 7.1:+34259974 | MS.gene78464:CDS |
| TGCCATCTGTTGCCATTGGG+AGG | 0.550215 | 7.1:+34258326 | MS.gene78464:CDS |
| CACAGGTATCCCCGAAGACA+TGG | 0.550551 | 7.1:-34259893 | None:intergenic |
| TATAGTTAACTTGTGGTGAT+GGG | 0.550671 | 7.1:-34260215 | None:intergenic |
| GTGGTGGCAGCACGCGCCGG+AGG | 0.554010 | 7.1:+34259913 | MS.gene78464:CDS |
| AACTCTTTGTCGAACAAAAG+GGG | 0.558837 | 7.1:-34260027 | None:intergenic |
| TCATCGGAGATGGACCGTAC+AGG | 0.559868 | 7.1:+34258912 | MS.gene78464:CDS |
| CCTGTGGTGGCAGCACGCGC+CGG | 0.571301 | 7.1:+34259910 | MS.gene78464:CDS |
| GAAGCTCGAGTTGCTTTCAT+CGG | 0.571976 | 7.1:+34258896 | MS.gene78464:CDS |
| TTCATTTCGAACCTTTCGTG+TGG | 0.577756 | 7.1:-34260109 | None:intergenic |
| CCAAGTGTTTCTGACTCTGA+AGG | 0.579198 | 7.1:-34259853 | None:intergenic |
| AAGATTCGTCTTTGGAACAA+AGG | 0.579970 | 7.1:+34258519 | MS.gene78464:CDS |
| TATTATTGAGACCCTTACAA+TGG | 0.581845 | 7.1:+34260175 | MS.gene78464:CDS |
| GGTATGCCTGCAGTATTCAC+AGG | 0.583017 | 7.1:+34259772 | MS.gene78464:CDS |
| GCCATCTGTTGCCATTGGGA+GGG | 0.585852 | 7.1:+34258327 | MS.gene78464:CDS |
| CATCATCTATAGTTAACTTG+TGG | 0.591830 | 7.1:-34260222 | None:intergenic |
| GTATTCACAGGAATGTTAGG+AGG | 0.591955 | 7.1:+34259784 | MS.gene78464:CDS |
| ATTATTCCTGCAGATCAAGA+AGG | 0.599930 | 7.1:+34259946 | MS.gene78464:CDS |
| TCCCTCCCAATGGCAACAGA+TGG | 0.600891 | 7.1:-34258328 | None:intergenic |
| CGTCCAACATGAACTATCAA+GGG | 0.605699 | 7.1:-34258687 | None:intergenic |
| CGTTTACTGATCCATTGTAA+GGG | 0.609300 | 7.1:-34260186 | None:intergenic |
| CAAGCGGCTAGAGTAACAGC+AGG | 0.610811 | 7.1:+34258355 | MS.gene78464:CDS |
| CGCTTGAAGATCCCTCCCAA+TGG | 0.611728 | 7.1:-34258338 | None:intergenic |
| TATTCACAGGAATGTTAGGA+GGG | 0.613060 | 7.1:+34259785 | MS.gene78464:CDS |
| TTAATCGCATTTCGTGTGAA+CGG | 0.618791 | 7.1:-34258572 | None:intergenic |
| AAACCCTTGATAGTTCATGT+TGG | 0.620136 | 7.1:+34258684 | MS.gene78464:CDS |
| ATTTCGTGTGAACGGAATCG+TGG | 0.620865 | 7.1:-34258564 | None:intergenic |
| TTGGAAGGCAGCCACACGAA+AGG | 0.624568 | 7.1:+34260098 | MS.gene78464:CDS |
| GTCATAATAAGTCACCTGTA+CGG | 0.625754 | 7.1:-34258926 | None:intergenic |
| AAAGAGTTGAGAGAAACCAT+AGG | 0.627134 | 7.1:+34260042 | MS.gene78464:CDS |
| CATGTCTTCGGGGATACCTG+TGG | 0.630437 | 7.1:+34259894 | MS.gene78464:CDS |
| TTTCTTGCGCCAGAACCAGA+TGG | 0.633203 | 7.1:-34260145 | None:intergenic |
| CATTGGGAGGGATCTTCAAG+CGG | 0.642986 | 7.1:+34258339 | MS.gene78464:CDS |
| ATTCACAGGAATGTTAGGAG+GGG | 0.648550 | 7.1:+34259786 | MS.gene78464:CDS |
| GTCTTCGGGGATACCTGTGG+TGG | 0.652844 | 7.1:+34259897 | MS.gene78464:CDS |
| GCTAGTGAAACCGATGTGGT+TGG | 0.662309 | 7.1:+34258181 | None:intergenic |
| AGGTTATCTCTATAATCCAG+GGG | 0.701223 | 7.1:+34259975 | MS.gene78464:CDS |
| GTACTTATGACCAACCACAT+CGG | 0.712969 | 7.1:-34258191 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAATATATCTTTCAT+AGG | + | chr7.1:34258802-34258821 | MS.gene78464:intron | 15.0% |
| !! | AATAACGAAAAAATGACAAA+AGG | - | chr7.1:34258612-34258631 | None:intergenic | 20.0% |
| !! | ATAAACAATTATGAGTGTTT+GGG | + | chr7.1:34259151-34259170 | MS.gene78464:intron | 20.0% |
| !! | ATGAAATGGAAAAATTTGAT+TGG | + | chr7.1:34260079-34260098 | MS.gene78464:CDS | 20.0% |
| !! | ATTGTTAAATATGAACACTT+TGG | + | chr7.1:34259687-34259706 | MS.gene78464:intron | 20.0% |
| !! | GAACACAAATTATACTTTAT+AGG | + | chr7.1:34259256-34259275 | MS.gene78464:intron | 20.0% |
| !! | GTTTAAATATAAGCATTTCT+CGG | + | chr7.1:34258431-34258450 | MS.gene78464:intron | 20.0% |
| !! | TTTCTTTGATTATACTTTCT+AGG | + | chr7.1:34259306-34259325 | MS.gene78464:intron | 20.0% |
| !!! | ATTAGCTTAAAAGAACTTAT+AGG | - | chr7.1:34259210-34259229 | None:intergenic | 20.0% |
| !!! | CTTTTAAGCTAATTTCAATA+AGG | + | chr7.1:34259217-34259236 | MS.gene78464:intron | 20.0% |
| !!! | TTATCTAGTCGTTTTATATA+TGG | + | chr7.1:34258394-34258413 | MS.gene78464:intron | 20.0% |
| ! | AAAATATTGAGAATGAGATG+TGG | - | chr7.1:34259627-34259646 | None:intergenic | 25.0% |
| ! | AATGGAAAAATTTGATTGGA+AGG | + | chr7.1:34260083-34260102 | MS.gene78464:CDS | 25.0% |
| ! | ATATAAAACGACTAGATAAG+AGG | - | chr7.1:34258393-34258412 | None:intergenic | 25.0% |
| ! | ATTTGTGTTCATAAGCTATT+TGG | - | chr7.1:34259246-34259265 | None:intergenic | 25.0% |
| ! | CATAAACAATTATGAGTGTT+TGG | + | chr7.1:34259150-34259169 | MS.gene78464:intron | 25.0% |
| ! | GGATAAACAACTTAATTAAG+CGG | - | chr7.1:34259538-34259557 | None:intergenic | 25.0% |
| ! | TTCCATCTCAAATCATATAA+TGG | + | chr7.1:34259036-34259055 | MS.gene78464:intron | 25.0% |
| !! | ACAAATATTTGAGACCATAT+AGG | - | chr7.1:34258241-34258260 | None:intergenic | 25.0% |
| !! | ACAATTTTCATTATCTAGAG+AGG | - | chr7.1:34259672-34259691 | None:intergenic | 25.0% |
| !! | CAATTTTCATTATCTAGAGA+GGG | - | chr7.1:34259671-34259690 | None:intergenic | 25.0% |
| !! | TGTGAGCATATCATAAATTT+TGG | + | chr7.1:34258258-34258277 | MS.gene78464:intron | 25.0% |
| !! | TTTCATGTTTAGAACATGTT+TGG | + | chr7.1:34259089-34259108 | MS.gene78464:intron | 25.0% |
| !!! | AAGAGTTTAGGTTTTATCAA+AGG | + | chr7.1:34258723-34258742 | MS.gene78464:CDS | 25.0% |
| !!! | AGAGTTTAGGTTTTATCAAA+GGG | + | chr7.1:34258724-34258743 | MS.gene78464:CDS | 25.0% |
| !!! | TTGCTTACTTTTTTCCTATA+TGG | + | chr7.1:34258224-34258243 | MS.gene78464:intron | 25.0% |
| AATCCTCAAAAGAAAGAGAA+AGG | - | chr7.1:34259569-34259588 | None:intergenic | 30.0% | |
| ATCCTCAAAAGAAAGAGAAA+GGG | - | chr7.1:34259568-34259587 | None:intergenic | 30.0% | |
| CAACTTAATTAAGCGGTTAT+CGG | - | chr7.1:34259531-34259550 | None:intergenic | 30.0% | |
| GACTTCTGAACAGTTTATTT+GGG | + | chr7.1:34259115-34259134 | MS.gene78464:intron | 30.0% | |
| TATTATTGAGACCCTTACAA+TGG | + | chr7.1:34260175-34260194 | MS.gene78464:CDS | 30.0% | |
| TGACTTCTGAACAGTTTATT+TGG | + | chr7.1:34259114-34259133 | MS.gene78464:intron | 30.0% | |
| ! | CGAGAAATTCCATTTTATGA+TGG | - | chr7.1:34259069-34259088 | None:intergenic | 30.0% |
| ! | TATATGATTTGAGATGGAAG+AGG | - | chr7.1:34259035-34259054 | None:intergenic | 30.0% |
| !! | TATAGTTAACTTGTGGTGAT+GGG | - | chr7.1:34260218-34260237 | None:intergenic | 30.0% |
| !! | TCTAGTCGTTTTATATATGG+TGG | + | chr7.1:34258397-34258416 | MS.gene78464:intron | 30.0% |
| !! | TTCCATTTTATGATGGTGAT+TGG | - | chr7.1:34259062-34259081 | None:intergenic | 30.0% |
| !! | TTCTCTTTCTTTTGAGGATT+TGG | + | chr7.1:34259569-34259588 | MS.gene78464:intron | 30.0% |
| AAAAGCTGCACGTAATGAAA+TGG | + | chr7.1:34260065-34260084 | MS.gene78464:CDS | 35.0% | |
| AAAGAGTTGAGAGAAACCAT+AGG | + | chr7.1:34260042-34260061 | MS.gene78464:CDS | 35.0% | |
| AACTCTTTGTCGAACAAAAG+GGG | - | chr7.1:34260030-34260049 | None:intergenic | 35.0% | |
| ACAGGTTATCTCTATAATCC+AGG | + | chr7.1:34259973-34259992 | MS.gene78464:CDS | 35.0% | |
| ACGAAATGCGATTAAGACTA+AGG | + | chr7.1:34258580-34258599 | MS.gene78464:CDS | 35.0% | |
| ACGTTTACTGATCCATTGTA+AGG | - | chr7.1:34260190-34260209 | None:intergenic | 35.0% | |
| AGGTTATCTCTATAATCCAG+GGG | + | chr7.1:34259975-34259994 | MS.gene78464:CDS | 35.0% | |
| ATATCTGTTCCAGTTGTGTA+TGG | + | chr7.1:34258963-34258982 | MS.gene78464:intron | 35.0% | |
| ATTATTCCTGCAGATCAAGA+AGG | + | chr7.1:34259946-34259965 | MS.gene78464:CDS | 35.0% | |
| CAACTCTTTGTCGAACAAAA+GGG | - | chr7.1:34260031-34260050 | None:intergenic | 35.0% | |
| CAGGTTATCTCTATAATCCA+GGG | + | chr7.1:34259974-34259993 | MS.gene78464:CDS | 35.0% | |
| CGTTTACTGATCCATTGTAA+GGG | - | chr7.1:34260189-34260208 | None:intergenic | 35.0% | |
| CTTGGAGTTGAAAAGAGTTT+AGG | + | chr7.1:34258711-34258730 | MS.gene78464:CDS | 35.0% | |
| CTTTGTCAATGCAGCAAAAT+TGG | + | chr7.1:34258459-34258478 | MS.gene78464:intron | 35.0% | |
| GAGCTAGAGAAAATGTTTGA+AGG | + | chr7.1:34259751-34259770 | MS.gene78464:CDS | 35.0% | |
| GATGAGTTCTTTAACTACCA+GGG | + | chr7.1:34259726-34259745 | MS.gene78464:intron | 35.0% | |
| GGCCATTATATGATTTGAGA+TGG | - | chr7.1:34259041-34259060 | None:intergenic | 35.0% | |
| GTCATAATAAGTCACCTGTA+CGG | - | chr7.1:34258929-34258948 | None:intergenic | 35.0% | |
| TATTCACAGGAATGTTAGGA+GGG | + | chr7.1:34259785-34259804 | MS.gene78464:CDS | 35.0% | |
| TCAACTCTTTGTCGAACAAA+AGG | - | chr7.1:34260032-34260051 | None:intergenic | 35.0% | |
| TGATCTGCAGGAATAATATC+TGG | - | chr7.1:34259943-34259962 | None:intergenic | 35.0% | |
| TGATGAGTTCTTTAACTACC+AGG | + | chr7.1:34259725-34259744 | MS.gene78464:intron | 35.0% | |
| TTAATCGCATTTCGTGTGAA+CGG | - | chr7.1:34258575-34258594 | None:intergenic | 35.0% | |
| ! | AAACCCTTGATAGTTCATGT+TGG | + | chr7.1:34258684-34258703 | MS.gene78464:CDS | 35.0% |
| ! | AATAATATCTGGAATGCCTC+CGG | - | chr7.1:34259932-34259951 | None:intergenic | 35.0% |
| ! | CAGTTTTCATCTTACAGCAA+CGG | + | chr7.1:34258651-34258670 | MS.gene78464:intron | 35.0% |
| !! | AAGATTCGTCTTTGGAACAA+AGG | + | chr7.1:34258519-34258538 | MS.gene78464:CDS | 35.0% |
| !! | CAATTTTGCTGCATTGACAA+AGG | - | chr7.1:34258461-34258480 | None:intergenic | 35.0% |
| !! | CTATAGTTAACTTGTGGTGA+TGG | - | chr7.1:34260219-34260238 | None:intergenic | 35.0% |
| !! | GTATGGCAGCTTTTAACTAA+TGG | + | chr7.1:34258980-34258999 | MS.gene78464:intron | 35.0% |
| !! | TCTTTCTTTTGAGGATTTGG+AGG | + | chr7.1:34259572-34259591 | MS.gene78464:intron | 35.0% |
| AACAATACAATGCTGCCATC+TGG | + | chr7.1:34260130-34260149 | MS.gene78464:CDS | 40.0% | |
| AACATTCCTGTGAATACTGC+AGG | - | chr7.1:34259781-34259800 | None:intergenic | 40.0% | |
| ATTCACAGGAATGTTAGGAG+GGG | + | chr7.1:34259786-34259805 | MS.gene78464:CDS | 40.0% | |
| CAAAGACGAATCTTGTTAGC+TGG | - | chr7.1:34258513-34258532 | None:intergenic | 40.0% | |
| CAGCTAACAAGATTCGTCTT+TGG | + | chr7.1:34258511-34258530 | MS.gene78464:intron | 40.0% | |
| CGTCCAACATGAACTATCAA+GGG | - | chr7.1:34258690-34258709 | None:intergenic | 40.0% | |
| GCAGATCAAGAAGGTAAAAC+AGG | + | chr7.1:34259955-34259974 | MS.gene78464:CDS | 40.0% | |
| GCAGTATTCACAGGAATGTT+AGG | + | chr7.1:34259781-34259800 | MS.gene78464:CDS | 40.0% | |
| GGCCAATCACCATCATAAAA+TGG | + | chr7.1:34259057-34259076 | MS.gene78464:intron | 40.0% | |
| GTATTCACAGGAATGTTAGG+AGG | + | chr7.1:34259784-34259803 | MS.gene78464:CDS | 40.0% | |
| TAAAAGCTGCCATACACAAC+TGG | - | chr7.1:34258975-34258994 | None:intergenic | 40.0% | |
| TGAACTATCAAGGGTTTCTC+AGG | - | chr7.1:34258681-34258700 | None:intergenic | 40.0% | |
| TGTCAATGCAGCAAAATTGG+TGG | + | chr7.1:34258462-34258481 | MS.gene78464:intron | 40.0% | |
| TGTTTGACACCTGAACCAAA+TGG | + | chr7.1:34258846-34258865 | MS.gene78464:intron | 40.0% | |
| TTCATTTCGAACCTTTCGTG+TGG | - | chr7.1:34260112-34260131 | None:intergenic | 40.0% | |
| ! | AACACTTGGCTTCGTTGTTT+TGG | + | chr7.1:34259867-34259886 | MS.gene78464:CDS | 40.0% |
| ! | ATTACGTGCAGCTTTTCCTA+TGG | - | chr7.1:34260061-34260080 | None:intergenic | 40.0% |
| ! | CCTTGATAGTTCATGTTGGA+CGG | + | chr7.1:34258688-34258707 | MS.gene78464:CDS | 40.0% |
| ! | GTTTTACCTTCTTGATCTGC+AGG | - | chr7.1:34259955-34259974 | None:intergenic | 40.0% |
| ! | TGCCCTTTCTCTTTCTTTTG+AGG | + | chr7.1:34259563-34259582 | MS.gene78464:intron | 40.0% |
| !! | CTGAACCAAATGGTTTTGCA+GGG | + | chr7.1:34258856-34258875 | MS.gene78464:intron | 40.0% |
| !! | GTCGTTTTATATATGGTGGC+TGG | + | chr7.1:34258401-34258420 | MS.gene78464:intron | 40.0% |
| ATAGTTCATGTTGGACGGCT+TGG | + | chr7.1:34258693-34258712 | MS.gene78464:CDS | 45.0% | |
| ATGAAAGCAACTCGAGCTTC+AGG | - | chr7.1:34258896-34258915 | None:intergenic | 45.0% | |
| ATTTCGTGTGAACGGAATCG+TGG | - | chr7.1:34258567-34258586 | None:intergenic | 45.0% | |
| CATGACCCTGCAAAACCATT+TGG | - | chr7.1:34258864-34258883 | None:intergenic | 45.0% | |
| CCGTCCAACATGAACTATCA+AGG | - | chr7.1:34258691-34258710 | None:intergenic | 45.0% | |
| CCTTCAGAGTCAGAAACACT+TGG | + | chr7.1:34259853-34259872 | MS.gene78464:CDS | 45.0% | |
| CTCTCTCAAGCATATGCTAG+TGG | + | chr7.1:34259814-34259833 | MS.gene78464:CDS | 45.0% | |
| GAGTTCTTTAACTACCAGGG+AGG | + | chr7.1:34259729-34259748 | MS.gene78464:intron | 45.0% | |
| GGACTGAAATCTCTAGACAG+AGG | - | chr7.1:34259606-34259625 | None:intergenic | 45.0% | |
| ! | AGAAAGAGAAAGGGCATGCT+TGG | - | chr7.1:34259559-34259578 | None:intergenic | 45.0% |
| ! | CCAAGTGTTTCTGACTCTGA+AGG | - | chr7.1:34259856-34259875 | None:intergenic | 45.0% |
| ! | CCTGCAAAACCATTTGGTTC+AGG | - | chr7.1:34258858-34258877 | None:intergenic | 45.0% |
| ! | GAAGCTCGAGTTGCTTTCAT+CGG | + | chr7.1:34258896-34258915 | MS.gene78464:CDS | 45.0% |
| !! | CAAATGGTTTTGCAGGGTCA+TGG | + | chr7.1:34258862-34258881 | MS.gene78464:intron | 45.0% |
| !! | CCTGAACCAAATGGTTTTGC+AGG | + | chr7.1:34258855-34258874 | MS.gene78464:intron | 45.0% |
| !!! | ACTTGGCTTCGTTGTTTTGG+AGG | + | chr7.1:34259870-34259889 | MS.gene78464:CDS | 45.0% |
| !!! | TGTTTTGGAGGCCATGTCTT+CGG | + | chr7.1:34259882-34259901 | MS.gene78464:CDS | 45.0% |
| AAGCAGTCTTCAAGATCCCC+TGG | - | chr7.1:34259994-34260013 | None:intergenic | 50.0% | |
| CATTGGGAGGGATCTTCAAG+CGG | + | chr7.1:34258339-34258358 | MS.gene78464:CDS | 50.0% | |
| GGTATGCCTGCAGTATTCAC+AGG | + | chr7.1:34259772-34259791 | MS.gene78464:CDS | 50.0% | |
| TTTCTTGCGCCAGAACCAGA+TGG | - | chr7.1:34260148-34260167 | None:intergenic | 50.0% | |
| ! | ACAATGCTGCCATCTGGTTC+TGG | + | chr7.1:34260136-34260155 | MS.gene78464:CDS | 50.0% |
| ! | CGAGTTGCTTTCATCGGAGA+TGG | + | chr7.1:34258902-34258921 | MS.gene78464:CDS | 50.0% |
| !! | CATTTTCTCTAGCTCCTCCC+TGG | - | chr7.1:34259746-34259765 | None:intergenic | 50.0% |
| !! | CTGGTTCTGGCGCAAGAAAA+GGG | + | chr7.1:34260149-34260168 | MS.gene78464:CDS | 50.0% |
| !! | TCTGGTTCTGGCGCAAGAAA+AGG | + | chr7.1:34260148-34260167 | MS.gene78464:CDS | 50.0% |
| !! | TGGTGCCATCTGTTGCCATT+GGG | + | chr7.1:34258323-34258342 | MS.gene78464:CDS | 50.0% |
| !! | TTTTGGAGGCCATGTCTTCG+GGG | + | chr7.1:34259884-34259903 | MS.gene78464:CDS | 50.0% |
| !!! | GTTTTGGAGGCCATGTCTTC+GGG | + | chr7.1:34259883-34259902 | MS.gene78464:CDS | 50.0% |
| CAACAGATGGCACCAGAGTC+AGG | - | chr7.1:34258318-34258337 | None:intergenic | 55.0% | |
| CAAGCGGCTAGAGTAACAGC+AGG | + | chr7.1:34258355-34258374 | MS.gene78464:CDS | 55.0% | |
| CACAGGTATCCCCGAAGACA+TGG | - | chr7.1:34259896-34259915 | None:intergenic | 55.0% | |
| CATGTCTTCGGGGATACCTG+TGG | + | chr7.1:34259894-34259913 | MS.gene78464:CDS | 55.0% | |
| CGCTTGAAGATCCCTCCCAA+TGG | - | chr7.1:34258341-34258360 | None:intergenic | 55.0% | |
| CGTGTGAACGGAATCGTGGA+TGG | - | chr7.1:34258563-34258582 | None:intergenic | 55.0% | |
| GCCATCTGTTGCCATTGGGA+GGG | + | chr7.1:34258327-34258346 | MS.gene78464:CDS | 55.0% | |
| TCATCGGAGATGGACCGTAC+AGG | + | chr7.1:34258912-34258931 | MS.gene78464:CDS | 55.0% | |
| TCCCTCCCAATGGCAACAGA+TGG | - | chr7.1:34258331-34258350 | None:intergenic | 55.0% | |
| TGCCATCTGTTGCCATTGGG+AGG | + | chr7.1:34258326-34258345 | MS.gene78464:CDS | 55.0% | |
| TTGGAAGGCAGCCACACGAA+AGG | + | chr7.1:34260098-34260117 | MS.gene78464:CDS | 55.0% | |
| !! | CTGGTGCCATCTGTTGCCAT+TGG | + | chr7.1:34258322-34258341 | MS.gene78464:CDS | 55.0% |
| CAGAGCAGCTGACCTGACTC+TGG | + | chr7.1:34258303-34258322 | MS.gene78464:CDS | 60.0% | |
| GTCTTCGGGGATACCTGTGG+TGG | + | chr7.1:34259897-34259916 | MS.gene78464:CDS | 60.0% | |
| CCTGTGGTGGCAGCACGCGC+CGG | + | chr7.1:34259910-34259929 | MS.gene78464:CDS | 75.0% | |
| ! | CCGGCGCGTGCTGCCACCAC+AGG | - | chr7.1:34259913-34259932 | None:intergenic | 80.0% |
| ! | GTGGTGGCAGCACGCGCCGG+AGG | + | chr7.1:34259913-34259932 | MS.gene78464:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 34258194 | 34260242 | 34258194 | ID=MS.gene78464 |
| chr7.1 | mRNA | 34258194 | 34260242 | 34258194 | ID=MS.gene78464.t1;Parent=MS.gene78464 |
| chr7.1 | exon | 34258194 | 34258209 | 34258194 | ID=MS.gene78464.t1.exon1;Parent=MS.gene78464.t1 |
| chr7.1 | CDS | 34258194 | 34258209 | 34258194 | ID=cds.MS.gene78464.t1;Parent=MS.gene78464.t1 |
| chr7.1 | exon | 34258293 | 34258376 | 34258293 | ID=MS.gene78464.t1.exon2;Parent=MS.gene78464.t1 |
| chr7.1 | CDS | 34258293 | 34258376 | 34258293 | ID=cds.MS.gene78464.t1;Parent=MS.gene78464.t1 |
| chr7.1 | exon | 34258514 | 34258601 | 34258514 | ID=MS.gene78464.t1.exon3;Parent=MS.gene78464.t1 |
| chr7.1 | CDS | 34258514 | 34258601 | 34258514 | ID=cds.MS.gene78464.t1;Parent=MS.gene78464.t1 |
| chr7.1 | exon | 34258668 | 34258745 | 34258668 | ID=MS.gene78464.t1.exon4;Parent=MS.gene78464.t1 |
| chr7.1 | CDS | 34258668 | 34258745 | 34258668 | ID=cds.MS.gene78464.t1;Parent=MS.gene78464.t1 |
| chr7.1 | exon | 34258877 | 34258933 | 34258877 | ID=MS.gene78464.t1.exon5;Parent=MS.gene78464.t1 |
| chr7.1 | CDS | 34258877 | 34258933 | 34258877 | ID=cds.MS.gene78464.t1;Parent=MS.gene78464.t1 |
| chr7.1 | exon | 34259747 | 34260242 | 34259747 | ID=MS.gene78464.t1.exon6;Parent=MS.gene78464.t1 |
| chr7.1 | CDS | 34259747 | 34260242 | 34259747 | ID=cds.MS.gene78464.t1;Parent=MS.gene78464.t1 |
| Gene Sequence |
| Protein sequence |
