Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99806.t1 | XP_003596609.1 | 97.4 | 230 | 6 | 0 | 1 | 230 | 1 | 230 | 1.20E-117 | 432.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99806.t1 | Q9SGH4 | 55.4 | 224 | 94 | 3 | 1 | 223 | 1 | 219 | 8.6e-61 | 235.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99806.t1 | G7IHD6 | 97.4 | 230 | 6 | 0 | 1 | 230 | 1 | 230 | 8.5e-118 | 432.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene99806 | 0.824894 | 6.30E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene99806 | 0.808692 | 2.73E-50 | -1.69E-46 |
| MS.gene049297 | MS.gene99806 | 0.800293 | 1.54E-48 | -1.69E-46 |
| MS.gene049346 | MS.gene99806 | 0.883396 | 4.65E-71 | -1.69E-46 |
| MS.gene049351 | MS.gene99806 | 0.819587 | 1.07E-52 | -1.69E-46 |
| MS.gene049599 | MS.gene99806 | -0.819093 | 1.39E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene99806 | 0.853004 | 3.18E-61 | -1.69E-46 |
| MS.gene049662 | MS.gene99806 | 0.853421 | 2.42E-61 | -1.69E-46 |
| MS.gene049758 | MS.gene99806 | 0.885808 | 5.91E-72 | -1.69E-46 |
| MS.gene049910 | MS.gene99806 | 0.867634 | 1.18E-65 | -1.69E-46 |
| MS.gene049915 | MS.gene99806 | 0.864944 | 8.44E-65 | -1.69E-46 |
| MS.gene050076 | MS.gene99806 | 0.813855 | 2.07E-51 | -1.69E-46 |
| MS.gene050099 | MS.gene99806 | 0.810559 | 1.09E-50 | -1.69E-46 |
| MS.gene050128 | MS.gene99806 | 0.822669 | 2.09E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene99806 | 0.890675 | 7.95E-74 | -1.69E-46 |
| MS.gene050330 | MS.gene99806 | -0.812534 | 4.04E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene99806 | 0.848188 | 7.19E-60 | -1.69E-46 |
| MS.gene050404 | MS.gene99806 | 0.828101 | 1.08E-54 | -1.69E-46 |
| MS.gene050406 | MS.gene99806 | 0.85401 | 1.64E-61 | -1.69E-46 |
| MS.gene050432 | MS.gene99806 | 0.802129 | 6.49E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene99806 | 0.836001 | 1.21E-56 | -1.69E-46 |
| MS.gene050529 | MS.gene99806 | 0.846462 | 2.14E-59 | -1.69E-46 |
| MS.gene05053 | MS.gene99806 | 0.811898 | 5.56E-51 | -1.69E-46 |
| MS.gene050558 | MS.gene99806 | 0.829801 | 4.20E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene99806 | 0.831703 | 1.44E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene99806 | 0.847548 | 1.08E-59 | -1.69E-46 |
| MS.gene050820 | MS.gene99806 | 0.804019 | 2.64E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene99806 | 0.837163 | 6.11E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene99806 | 0.840361 | 9.11E-58 | -1.69E-46 |
| MS.gene05119 | MS.gene99806 | -0.830474 | 2.88E-55 | -1.69E-46 |
| MS.gene051471 | MS.gene99806 | 0.849391 | 3.33E-60 | -1.69E-46 |
| MS.gene051582 | MS.gene99806 | 0.831343 | 1.76E-55 | -1.69E-46 |
| MS.gene051663 | MS.gene99806 | 0.801029 | 1.09E-48 | -1.69E-46 |
| MS.gene051860 | MS.gene99806 | 0.854337 | 1.32E-61 | -1.69E-46 |
| MS.gene051983 | MS.gene99806 | 0.829227 | 5.79E-55 | -1.69E-46 |
| MS.gene052011 | MS.gene99806 | -0.833345 | 5.63E-56 | -1.69E-46 |
| MS.gene052025 | MS.gene99806 | 0.805511 | 1.29E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene99806 | 0.852879 | 3.45E-61 | -1.69E-46 |
| MS.gene052078 | MS.gene99806 | 0.863698 | 2.07E-64 | -1.69E-46 |
| MS.gene052178 | MS.gene99806 | 0.847588 | 1.05E-59 | -1.69E-46 |
| MS.gene052188 | MS.gene99806 | 0.871013 | 9.44E-67 | -1.69E-46 |
| MS.gene052207 | MS.gene99806 | 0.831482 | 1.63E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene99806 | 0.868269 | 7.40E-66 | -1.69E-46 |
| MS.gene052255 | MS.gene99806 | 0.827493 | 1.52E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene99806 | 0.870491 | 1.40E-66 | -1.69E-46 |
| MS.gene052340 | MS.gene99806 | 0.877077 | 8.39E-69 | -1.69E-46 |
| MS.gene052485 | MS.gene99806 | 0.824734 | 6.87E-54 | -1.69E-46 |
| MS.gene052767 | MS.gene99806 | 0.834522 | 2.85E-56 | -1.69E-46 |
| MS.gene053073 | MS.gene99806 | 0.837185 | 6.03E-57 | -1.69E-46 |
| MS.gene053209 | MS.gene99806 | 0.849232 | 3.69E-60 | -1.69E-46 |
| MS.gene053557 | MS.gene99806 | 0.847716 | 9.69E-60 | -1.69E-46 |
| MS.gene053577 | MS.gene99806 | 0.808937 | 2.42E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene99806 | 0.895901 | 6.17E-76 | -1.69E-46 |
| MS.gene053907 | MS.gene99806 | 0.815256 | 1.01E-51 | -1.69E-46 |
| MS.gene053928 | MS.gene99806 | 0.836198 | 1.08E-56 | -1.69E-46 |
| MS.gene053971 | MS.gene99806 | 0.810648 | 1.04E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene99806 | 0.80578 | 1.13E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene99806 | 0.830695 | 2.54E-55 | -1.69E-46 |
| MS.gene054012 | MS.gene99806 | 0.81063 | 1.05E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene99806 | 0.807955 | 3.93E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene99806 | 0.813701 | 2.24E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene99806 | 0.815641 | 8.33E-52 | -1.69E-46 |
| MS.gene054184 | MS.gene99806 | 0.820564 | 6.42E-53 | -1.69E-46 |
| MS.gene054185 | MS.gene99806 | 0.828793 | 7.38E-55 | -1.69E-46 |
| MS.gene054349 | MS.gene99806 | 0.814744 | 1.32E-51 | -1.69E-46 |
| MS.gene054473 | MS.gene99806 | 0.875643 | 2.62E-68 | -1.69E-46 |
| MS.gene054542 | MS.gene99806 | 0.840024 | 1.12E-57 | -1.69E-46 |
| MS.gene054618 | MS.gene99806 | 0.809971 | 1.45E-50 | -1.69E-46 |
| MS.gene054667 | MS.gene99806 | 0.803835 | 2.88E-49 | -1.69E-46 |
| MS.gene054918 | MS.gene99806 | 0.824362 | 8.41E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene99806 | 0.845125 | 4.94E-59 | -1.69E-46 |
| MS.gene054983 | MS.gene99806 | 0.865484 | 5.71E-65 | -1.69E-46 |
| MS.gene055116 | MS.gene99806 | 0.892193 | 1.99E-74 | -1.69E-46 |
| MS.gene055277 | MS.gene99806 | 0.857011 | 2.18E-62 | -1.69E-46 |
| MS.gene055390 | MS.gene99806 | 0.814152 | 1.78E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene99806 | 0.883677 | 3.66E-71 | -1.69E-46 |
| MS.gene055428 | MS.gene99806 | 0.877512 | 5.92E-69 | -1.69E-46 |
| MS.gene05553 | MS.gene99806 | 0.811855 | 5.68E-51 | -1.69E-46 |
| MS.gene055604 | MS.gene99806 | 0.84155 | 4.44E-58 | -1.69E-46 |
| MS.gene055712 | MS.gene99806 | 0.809846 | 1.55E-50 | -1.69E-46 |
| MS.gene055859 | MS.gene99806 | 0.805023 | 1.63E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene99806 | -0.813255 | 2.81E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene99806 | 0.843919 | 1.04E-58 | -1.69E-46 |
| MS.gene056314 | MS.gene99806 | 0.847852 | 8.89E-60 | -1.69E-46 |
| MS.gene056407 | MS.gene99806 | 0.85588 | 4.69E-62 | -1.69E-46 |
| MS.gene056451 | MS.gene99806 | 0.80745 | 5.02E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene99806 | 0.868106 | 8.35E-66 | -1.69E-46 |
| MS.gene056659 | MS.gene99806 | 0.843999 | 9.92E-59 | -1.69E-46 |
| MS.gene056899 | MS.gene99806 | -0.810293 | 1.24E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene99806 | 0.830374 | 3.04E-55 | -1.69E-46 |
| MS.gene05702 | MS.gene99806 | 0.883469 | 4.37E-71 | -1.69E-46 |
| MS.gene057121 | MS.gene99806 | 0.854149 | 1.49E-61 | -1.69E-46 |
| MS.gene057123 | MS.gene99806 | 0.80177 | 7.70E-49 | -1.69E-46 |
| MS.gene057245 | MS.gene99806 | 0.851234 | 1.01E-60 | -1.69E-46 |
| MS.gene05733 | MS.gene99806 | 0.835506 | 1.61E-56 | -1.69E-46 |
| MS.gene057439 | MS.gene99806 | 0.834191 | 3.46E-56 | -1.69E-46 |
| MS.gene057448 | MS.gene99806 | 0.831843 | 1.33E-55 | -1.69E-46 |
| MS.gene057449 | MS.gene99806 | 0.806212 | 9.18E-50 | -1.69E-46 |
| MS.gene057450 | MS.gene99806 | 0.836863 | 7.29E-57 | -1.69E-46 |
| MS.gene057469 | MS.gene99806 | 0.817639 | 2.97E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene99806 | 0.813687 | 2.26E-51 | -1.69E-46 |
| MS.gene057750 | MS.gene99806 | 0.805527 | 1.28E-49 | -1.69E-46 |
| MS.gene057754 | MS.gene99806 | 0.845761 | 3.32E-59 | -1.69E-46 |
| MS.gene057779 | MS.gene99806 | 0.802943 | 4.41E-49 | -1.69E-46 |
| MS.gene057796 | MS.gene99806 | 0.828037 | 1.12E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene99806 | 0.807279 | 5.46E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene99806 | 0.878953 | 1.85E-69 | -1.69E-46 |
| MS.gene058082 | MS.gene99806 | 0.823542 | 1.31E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene99806 | 0.878492 | 2.69E-69 | -1.69E-46 |
| MS.gene058139 | MS.gene99806 | 0.801841 | 7.44E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene99806 | 0.855288 | 6.98E-62 | -1.69E-46 |
| MS.gene058233 | MS.gene99806 | 0.835717 | 1.43E-56 | -1.69E-46 |
| MS.gene058276 | MS.gene99806 | 0.814709 | 1.34E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene99806 | 0.83106 | 2.07E-55 | -1.69E-46 |
| MS.gene058365 | MS.gene99806 | 0.809422 | 1.91E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene99806 | 0.849737 | 2.67E-60 | -1.69E-46 |
| MS.gene058710 | MS.gene99806 | 0.868799 | 4.99E-66 | -1.69E-46 |
| MS.gene058749 | MS.gene99806 | 0.832634 | 8.45E-56 | -1.69E-46 |
| MS.gene058787 | MS.gene99806 | 0.803457 | 3.45E-49 | -1.69E-46 |
| MS.gene058845 | MS.gene99806 | 0.839997 | 1.13E-57 | -1.69E-46 |
| MS.gene05886 | MS.gene99806 | 0.838553 | 2.69E-57 | -1.69E-46 |
| MS.gene058928 | MS.gene99806 | 0.811129 | 8.17E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene99806 | 0.864609 | 1.08E-64 | -1.69E-46 |
| MS.gene059124 | MS.gene99806 | 0.822834 | 1.92E-53 | -1.69E-46 |
| MS.gene059228 | MS.gene99806 | 0.813515 | 2.46E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene99806 | 0.874047 | 9.16E-68 | -1.69E-46 |
| MS.gene059294 | MS.gene99806 | 0.832628 | 8.48E-56 | -1.69E-46 |
| MS.gene059342 | MS.gene99806 | 0.807094 | 5.98E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene99806 | 0.835414 | 1.70E-56 | -1.69E-46 |
| MS.gene059421 | MS.gene99806 | 0.806911 | 6.54E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene99806 | 0.867157 | 1.68E-65 | -1.69E-46 |
| MS.gene059597 | MS.gene99806 | 0.849044 | 4.16E-60 | -1.69E-46 |
| MS.gene059676 | MS.gene99806 | 0.811044 | 8.52E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene99806 | 0.876724 | 1.11E-68 | -1.69E-46 |
| MS.gene059692 | MS.gene99806 | 0.888959 | 3.71E-73 | -1.69E-46 |
| MS.gene059695 | MS.gene99806 | 0.88776 | 1.07E-72 | -1.69E-46 |
| MS.gene05984 | MS.gene99806 | 0.88529 | 9.23E-72 | -1.69E-46 |
| MS.gene059894 | MS.gene99806 | 0.878513 | 2.64E-69 | -1.69E-46 |
| MS.gene059974 | MS.gene99806 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene06037 | MS.gene99806 | 0.878038 | 3.88E-69 | -1.69E-46 |
| MS.gene060403 | MS.gene99806 | 0.800348 | 1.50E-48 | -1.69E-46 |
| MS.gene060407 | MS.gene99806 | 0.81203 | 5.21E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene99806 | 0.834468 | 2.95E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene99806 | 0.922844 | 5.79E-89 | -1.69E-46 |
| MS.gene061051 | MS.gene99806 | -0.804978 | 1.67E-49 | -1.69E-46 |
| MS.gene061112 | MS.gene99806 | 0.804032 | 2.62E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene99806 | 0.807144 | 5.83E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene99806 | 0.80737 | 5.23E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99806.t1 | MTR_2g082580 | 97.391 | 230 | 6 | 0 | 1 | 230 | 1 | 230 | 1.50e-167 | 461 |
| MS.gene99806.t1 | MTR_5g041910 | 29.358 | 109 | 77 | 0 | 104 | 212 | 141 | 249 | 1.31e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99806.t1 | AT3G01440 | 55.357 | 224 | 94 | 3 | 1 | 223 | 1 | 219 | 9.93e-83 | 246 |
| MS.gene99806.t1 | AT4G21280 | 25.532 | 235 | 150 | 4 | 1 | 223 | 1 | 222 | 4.67e-18 | 80.1 |
| MS.gene99806.t1 | AT4G21280 | 25.424 | 236 | 150 | 5 | 1 | 223 | 1 | 223 | 2.76e-17 | 78.2 |
| MS.gene99806.t1 | AT4G05180 | 25.664 | 226 | 158 | 5 | 4 | 223 | 8 | 229 | 7.95e-15 | 71.6 |
| MS.gene99806.t1 | AT4G05180 | 25.664 | 226 | 158 | 5 | 4 | 223 | 8 | 229 | 7.95e-15 | 71.6 |
| MS.gene99806.t1 | AT1G14150 | 28.346 | 127 | 91 | 0 | 95 | 221 | 61 | 187 | 4.84e-13 | 65.9 |
| MS.gene99806.t1 | AT1G14150 | 30.303 | 99 | 69 | 0 | 95 | 193 | 61 | 159 | 3.01e-11 | 60.5 |
Find 34 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCTAAGGATAATGGATTT+TGG | 0.177277 | 2.3:+14847734 | MS.gene99806:CDS |
| TTTGTTTCTTTAGTTCTTAC+AGG | 0.230480 | 2.3:+14847688 | MS.gene99806:CDS |
| TTAAGGTTCCTTTGTGCATT+TGG | 0.247307 | 2.3:-14847568 | None:intergenic |
| CAAGTAGTAGTTGGATTTCT+TGG | 0.273988 | 2.3:+14847598 | MS.gene99806:CDS |
| AAACTTTACATGGCGAATAT+TGG | 0.290067 | 2.3:+14848614 | MS.gene99806:CDS |
| TTTGGAACAAGGCATGTAAT+TGG | 0.297323 | 2.3:-14847550 | None:intergenic |
| CTATTAGTGACAGTTGGTTC+TGG | 0.310416 | 2.3:-14847772 | None:intergenic |
| TGAAAGTTGACTTGAGTCTT+AGG | 0.313305 | 2.3:-14848736 | None:intergenic |
| GTGACAGTTGGTTCTGGAAT+AGG | 0.317646 | 2.3:-14847766 | None:intergenic |
| ATTTCACTAGCTAAGGATAA+TGG | 0.333626 | 2.3:+14847727 | MS.gene99806:CDS |
| CTACTACTTGTCCTGTCTTA+AGG | 0.340805 | 2.3:-14847585 | None:intergenic |
| TGTAATTGGAGTTAAAGTTT+TGG | 0.348907 | 2.3:-14847536 | None:intergenic |
| GACAGCTTGAAGAAGCTTCA+AGG | 0.421927 | 2.3:+14849154 | MS.gene99806:intron |
| AAGACACACTCAACTATGTT+AGG | 0.422431 | 2.3:+14848708 | MS.gene99806:CDS |
| ATGGCGAATATTGGAGCAAA+AGG | 0.440394 | 2.3:+14848623 | MS.gene99806:CDS |
| GATATTGCGAATGAGAAAAC+GGG | 0.451665 | 2.3:+14848569 | MS.gene99806:intron |
| AATTGCTGCTTATCTTCAGC+AGG | 0.453994 | 2.3:-14848794 | None:intergenic |
| AGATATTGCGAATGAGAAAA+CGG | 0.487470 | 2.3:+14848568 | MS.gene99806:intron |
| ATCTTACTATTAGTGACAGT+TGG | 0.488173 | 2.3:-14847778 | None:intergenic |
| TCCTTTGTGCATTTGGAACA+AGG | 0.495526 | 2.3:-14847561 | None:intergenic |
| AAGACAGGACAAGTAGTAGT+TGG | 0.499443 | 2.3:+14847589 | MS.gene99806:CDS |
| TGCATTTGATCTTCTTGCAA+TGG | 0.504301 | 2.3:+14848670 | MS.gene99806:CDS |
| TGAGAAGATTTCACTAGCTA+AGG | 0.517657 | 2.3:+14847720 | MS.gene99806:CDS |
| TGCTTAAAGATGTCATGGAC+AGG | 0.522204 | 2.3:+14849226 | MS.gene99806:CDS |
| TATTAAGAAGAAACTTTACA+TGG | 0.528232 | 2.3:+14848604 | MS.gene99806:CDS |
| ATTTGATCTTCTTGCAATGG+CGG | 0.551344 | 2.3:+14848673 | MS.gene99806:CDS |
| AGTTATGCTTAAAGATGTCA+TGG | 0.580022 | 2.3:+14849221 | MS.gene99806:CDS |
| GCTCTTCTAACAAACTTGCA+TGG | 0.586703 | 2.3:+14847508 | MS.gene99806:CDS |
| ACACACTCAACTATGTTAGG+AGG | 0.598523 | 2.3:+14848711 | MS.gene99806:CDS |
| GCACAAAGGAACCTTAAGAC+AGG | 0.610404 | 2.3:+14847574 | MS.gene99806:CDS |
| TAAGCAGCAATTGACTGATG+TGG | 0.624593 | 2.3:+14848805 | MS.gene99806:CDS |
| ATTGCTGCTTATCTTCAGCA+GGG | 0.656002 | 2.3:-14848793 | None:intergenic |
| GCCTTGTTCCAAATGCACAA+AGG | 0.685170 | 2.3:+14847560 | MS.gene99806:CDS |
| ATATTGCGAATGAGAAAACG+GGG | 0.750300 | 2.3:+14848570 | MS.gene99806:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTATTATTCAAATTT+AGG | - | chr2.3:14848410-14848429 | None:intergenic | 10.0% |
| !! | TTAATAATAAACAAATGTAA+TGG | - | chr2.3:14848212-14848231 | None:intergenic | 10.0% |
| !! | AAATATTAATTGTACTATCA+TGG | + | chr2.3:14848010-14848029 | MS.gene99806:intron | 15.0% |
| !! | ATTCACATAATATTAAATTG+TGG | - | chr2.3:14849098-14849117 | None:intergenic | 15.0% |
| !! | TTAATAATAAACAAATGCAA+TGG | + | chr2.3:14848123-14848142 | MS.gene99806:intron | 15.0% |
| !! | TTTGTTTATTATTAAATCGA+TGG | + | chr2.3:14848217-14848236 | MS.gene99806:intron | 15.0% |
| !! | TTTGTTTATTATTAAATCGA+TGG | - | chr2.3:14848236-14848217 | None:intergenic | 15.0% |
| !! | AATATTATGTGAATAGATGT+TGG | + | chr2.3:14849104-14849123 | MS.gene99806:intron | 20.0% |
| !! | TATAATTAACTTCATCATGA+TGG | + | chr2.3:14848241-14848260 | MS.gene99806:intron | 20.0% |
| !! | TATAATTAACTTCATCATGA+TGG | - | chr2.3:14848260-14848241 | None:intergenic | 20.0% |
| !! | TATAGCTAATGAATTTACAT+TGG | + | chr2.3:14847811-14847830 | MS.gene99806:intron | 20.0% |
| !! | TATTAAGAAGAAACTTTACA+TGG | + | chr2.3:14848604-14848623 | MS.gene99806:CDS | 20.0% |
| !! | TTTATGTTTCAATTGACATT+GGG | + | chr2.3:14847902-14847921 | MS.gene99806:intron | 20.0% |
| !!! | ATTGTTTGACAATTTTGAAA+AGG | + | chr2.3:14848835-14848854 | MS.gene99806:CDS | 20.0% |
| !!! | TTTTATGTTTCAATTGACAT+TGG | + | chr2.3:14847901-14847920 | MS.gene99806:intron | 20.0% |
| ! | ATAATCATCATTCACATTGT+TGG | - | chr2.3:14848542-14848561 | None:intergenic | 25.0% |
| ! | CAATGTGAATGATGATTATA+TGG | + | chr2.3:14848543-14848562 | MS.gene99806:intron | 25.0% |
| ! | GTTATGATTGAAATTTAGCA+TGG | + | chr2.3:14847978-14847997 | MS.gene99806:intron | 25.0% |
| !! | TGTAATTGGAGTTAAAGTTT+TGG | - | chr2.3:14847539-14847558 | None:intergenic | 25.0% |
| !!! | GTATGCTCTTTTTTAAATTG+CGG | + | chr2.3:14848857-14848876 | MS.gene99806:intron | 25.0% |
| !!! | TTTGTTTCTTTAGTTCTTAC+AGG | + | chr2.3:14847688-14847707 | MS.gene99806:CDS | 25.0% |
| AAACTTTACATGGCGAATAT+TGG | + | chr2.3:14848614-14848633 | MS.gene99806:CDS | 30.0% | |
| AGATATTGCGAATGAGAAAA+CGG | + | chr2.3:14848568-14848587 | MS.gene99806:intron | 30.0% | |
| AGTTATGCTTAAAGATGTCA+TGG | + | chr2.3:14849221-14849240 | MS.gene99806:CDS | 30.0% | |
| ATCTTACTATTAGTGACAGT+TGG | - | chr2.3:14847781-14847800 | None:intergenic | 30.0% | |
| ATTTCACTAGCTAAGGATAA+TGG | + | chr2.3:14847727-14847746 | MS.gene99806:CDS | 30.0% | |
| CAAATCTTGTACATAAGCAA+TGG | + | chr2.3:14848049-14848068 | MS.gene99806:intron | 30.0% | |
| CATAAAGTTGCAAACAAATG+TGG | + | chr2.3:14849016-14849035 | MS.gene99806:intron | 30.0% | |
| TACCTATTAGTGAAGTACAA+TGG | + | chr2.3:14848164-14848183 | MS.gene99806:intron | 30.0% | |
| TTAGGGGTAATCTTGTAAAT+TGG | + | chr2.3:14848350-14848369 | MS.gene99806:intron | 30.0% | |
| ! | CAGTATTTTATCACAGAGTT+CGG | - | chr2.3:14848463-14848482 | None:intergenic | 30.0% |
| !! | ATCTGTTTACTTTTGAACCA+GGG | + | chr2.3:14848508-14848527 | MS.gene99806:intron | 30.0% |
| !! | ATTTTAGTCCTTGATATTGC+AGG | + | chr2.3:14848894-14848913 | MS.gene99806:intron | 30.0% |
| !! | CATGTACTTTGATTTTGACA+AGG | + | chr2.3:14848757-14848776 | MS.gene99806:CDS | 30.0% |
| !! | TATCTGTTTACTTTTGAACC+AGG | + | chr2.3:14848507-14848526 | MS.gene99806:intron | 30.0% |
| !!! | GATAATGGATTTTGGATTGA+TGG | + | chr2.3:14847742-14847761 | MS.gene99806:CDS | 30.0% |
| !!! | TAGCTAAGGATAATGGATTT+TGG | + | chr2.3:14847734-14847753 | MS.gene99806:CDS | 30.0% |
| AAGACACACTCAACTATGTT+AGG | + | chr2.3:14848708-14848727 | MS.gene99806:CDS | 35.0% | |
| ATATTGCGAATGAGAAAACG+GGG | + | chr2.3:14848570-14848589 | MS.gene99806:CDS | 35.0% | |
| ATTTGATCTTCTTGCAATGG+CGG | + | chr2.3:14848673-14848692 | MS.gene99806:CDS | 35.0% | |
| CAAAATGTTGCAGACAAATG+TGG | + | chr2.3:14848943-14848962 | MS.gene99806:intron | 35.0% | |
| CAAGTAGTAGTTGGATTTCT+TGG | + | chr2.3:14847598-14847617 | MS.gene99806:CDS | 35.0% | |
| CTTGATATTGCAGGAAAAAG+TGG | + | chr2.3:14848903-14848922 | MS.gene99806:intron | 35.0% | |
| GATATTGCGAATGAGAAAAC+GGG | + | chr2.3:14848569-14848588 | MS.gene99806:intron | 35.0% | |
| TGAGAAGATTTCACTAGCTA+AGG | + | chr2.3:14847720-14847739 | MS.gene99806:CDS | 35.0% | |
| TGCATTTGATCTTCTTGCAA+TGG | + | chr2.3:14848670-14848689 | MS.gene99806:CDS | 35.0% | |
| TGCCATTGTACTTCACTAAT+AGG | - | chr2.3:14848169-14848188 | None:intergenic | 35.0% | |
| TTAAGGTTCCTTTGTGCATT+TGG | - | chr2.3:14847571-14847590 | None:intergenic | 35.0% | |
| ! | CACATTTGTCTGCAACATTT+TGG | - | chr2.3:14848945-14848964 | None:intergenic | 35.0% |
| ! | TTTGGAACAAGGCATGTAAT+TGG | - | chr2.3:14847553-14847572 | None:intergenic | 35.0% |
| !! | GACATTGGGACAATTTTGAT+TGG | + | chr2.3:14847916-14847935 | MS.gene99806:intron | 35.0% |
| !! | TGAAAGTTGACTTGAGTCTT+AGG | - | chr2.3:14848739-14848758 | None:intergenic | 35.0% |
| !!! | CACTTTTTCCTGCAATATCA+AGG | - | chr2.3:14848905-14848924 | None:intergenic | 35.0% |
| !!! | GAGCAAAAGGAAGTGTTTTA+AGG | + | chr2.3:14848636-14848655 | MS.gene99806:CDS | 35.0% |
| AAGACAGGACAAGTAGTAGT+TGG | + | chr2.3:14847589-14847608 | MS.gene99806:CDS | 40.0% | |
| ACACACTCAACTATGTTAGG+AGG | + | chr2.3:14848711-14848730 | MS.gene99806:CDS | 40.0% | |
| AGACCATACTAAGTGGCTTA+GGG | + | chr2.3:14848333-14848352 | MS.gene99806:intron | 40.0% | |
| ATGGCGAATATTGGAGCAAA+AGG | + | chr2.3:14848623-14848642 | MS.gene99806:CDS | 40.0% | |
| CATAAACATGACCGCAATTG+TGG | - | chr2.3:14848978-14848997 | None:intergenic | 40.0% | |
| CTACTACTTGTCCTGTCTTA+AGG | - | chr2.3:14847588-14847607 | None:intergenic | 40.0% | |
| GACTTGTGCACTTATCAGTA+AGG | - | chr2.3:14848300-14848319 | None:intergenic | 40.0% | |
| GCAAACAAATGTGGCTAATG+CGG | + | chr2.3:14849025-14849044 | MS.gene99806:intron | 40.0% | |
| GCTCTTCTAACAAACTTGCA+TGG | + | chr2.3:14847508-14847527 | MS.gene99806:CDS | 40.0% | |
| TAAGCAGCAATTGACTGATG+TGG | + | chr2.3:14848805-14848824 | MS.gene99806:CDS | 40.0% | |
| TAGACCATACTAAGTGGCTT+AGG | + | chr2.3:14848332-14848351 | MS.gene99806:intron | 40.0% | |
| TGCTTAAAGATGTCATGGAC+AGG | + | chr2.3:14849226-14849245 | MS.gene99806:CDS | 40.0% | |
| TTGCGGTCATGTTTATGTTG+TGG | + | chr2.3:14848981-14849000 | MS.gene99806:intron | 40.0% | |
| ! | AATTGCTGCTTATCTTCAGC+AGG | - | chr2.3:14848797-14848816 | None:intergenic | 40.0% |
| ! | ATTGCTGCTTATCTTCAGCA+GGG | - | chr2.3:14848796-14848815 | None:intergenic | 40.0% |
| ! | CTATTAGTGACAGTTGGTTC+TGG | - | chr2.3:14847775-14847794 | None:intergenic | 40.0% |
| ! | TCCTTTGTGCATTTGGAACA+AGG | - | chr2.3:14847564-14847583 | None:intergenic | 40.0% |
| AATTGCGGCACAAATGTCGA+TGG | - | chr2.3:14849064-14849083 | None:intergenic | 45.0% | |
| ATGTCGATGGACCACAATTG+CGG | - | chr2.3:14849051-14849070 | None:intergenic | 45.0% | |
| CATTGTTGGAACAAGAACCC+TGG | - | chr2.3:14848528-14848547 | None:intergenic | 45.0% | |
| GACAGCTTGAAGAAGCTTCA+AGG | + | chr2.3:14849154-14849173 | MS.gene99806:intron | 45.0% | |
| GACCATACTAAGTGGCTTAG+GGG | + | chr2.3:14848334-14848353 | MS.gene99806:intron | 45.0% | |
| GCACAAAGGAACCTTAAGAC+AGG | + | chr2.3:14847574-14847593 | MS.gene99806:CDS | 45.0% | |
| GCTGACTAGACCATACTAAG+TGG | + | chr2.3:14848326-14848345 | MS.gene99806:intron | 45.0% | |
| GTCAGAGACGTAGACACAAT+TGG | + | chr2.3:14848437-14848456 | MS.gene99806:intron | 45.0% | |
| GTGGTCAACAACTGCAATTG+CGG | - | chr2.3:14849079-14849098 | None:intergenic | 45.0% | |
| TACCCCTAAGCCACTTAGTA+TGG | - | chr2.3:14848339-14848358 | None:intergenic | 45.0% | |
| ! | GCCTTGTTCCAAATGCACAA+AGG | + | chr2.3:14847560-14847579 | MS.gene99806:CDS | 45.0% |
| !! | GTGACAGTTGGTTCTGGAAT+AGG | - | chr2.3:14847769-14847788 | None:intergenic | 45.0% |
| GGCTGATGTGACCACAATTG+CGG | + | chr2.3:14848964-14848983 | MS.gene99806:intron | 50.0% | |
| GGCTAATGCGGCCGCAATTG+TGG | + | chr2.3:14849037-14849056 | MS.gene99806:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 14847505 | 14849275 | 14847505 | ID=MS.gene99806 |
| chr2.3 | mRNA | 14847505 | 14849275 | 14847505 | ID=MS.gene99806.t1;Parent=MS.gene99806 |
| chr2.3 | exon | 14847505 | 14847793 | 14847505 | ID=MS.gene99806.t1.exon1;Parent=MS.gene99806.t1 |
| chr2.3 | CDS | 14847505 | 14847793 | 14847505 | ID=cds.MS.gene99806.t1;Parent=MS.gene99806.t1 |
| chr2.3 | exon | 14848570 | 14848856 | 14848570 | ID=MS.gene99806.t1.exon2;Parent=MS.gene99806.t1 |
| chr2.3 | CDS | 14848570 | 14848856 | 14848570 | ID=cds.MS.gene99806.t1;Parent=MS.gene99806.t1 |
| chr2.3 | exon | 14849159 | 14849275 | 14849159 | ID=MS.gene99806.t1.exon3;Parent=MS.gene99806.t1 |
| chr2.3 | CDS | 14849159 | 14849275 | 14849159 | ID=cds.MS.gene99806.t1;Parent=MS.gene99806.t1 |
| Gene Sequence |
| Protein sequence |
