AlfalfaGEDB | MS.gene53001

M. sativa cultivar XinJiangDaYe / MS.gene53001

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
PFAM: PF01985.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53001.t1	XP_003590782.1	92.6	757	55	1	1	757	1	756	0.00E+00	1281.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53001.t1	F4J2U9	61.2	775	272	14	1	757	1	764	5.9e-216	752.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53001.t1	G7I3X9	92.6	757	55	1	1	757	1	756	0.0e+00	1281.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene53001	0.868747	5.19E-66	-1.69E-46
MS.gene049151	MS.gene53001	0.8308	2.39E-55	-1.69E-46
MS.gene049153	MS.gene53001	0.864241	1.40E-64	-1.69E-46
MS.gene049170	MS.gene53001	0.808408	3.14E-50	-1.69E-46
MS.gene049233	MS.gene53001	0.807088	6.00E-50	-1.69E-46
MS.gene049260	MS.gene53001	0.826373	2.81E-54	-1.69E-46
MS.gene049351	MS.gene53001	0.856028	4.24E-62	-1.69E-46
MS.gene049356	MS.gene53001	0.81348	2.51E-51	-1.69E-46
MS.gene049378	MS.gene53001	0.825867	3.71E-54	-1.69E-46
MS.gene049389	MS.gene53001	0.801691	7.99E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53001.t1	MTR_1g475240	96.305	839	30	1	1	839	1	838	0.0	1652
MS.gene53001.t1	MTR_1g075190	96.305	839	30	1	1	839	1	838	0.0	1652
MS.gene53001.t1	MTR_4g126140	49.754	609	282	6	188	784	148	744	0.0	587
MS.gene53001.t1	MTR_6g084410	45.941	579	298	7	194	770	195	760	9.31e-165	499
MS.gene53001.t1	MTR_6g008410	42.949	624	295	8	206	807	145	729	6.78e-158	488
MS.gene53001.t1	MTR_8g104340	42.000	550	266	7	209	751	100	603	5.64e-137	421
MS.gene53001.t1	MTR_2g100660	41.227	587	315	10	181	748	139	714	1.71e-128	404
MS.gene53001.t1	MTR_8g104340	38.511	470	228	9	209	665	100	521	1.26e-93	304
MS.gene53001.t1	MTR_8g066010	39.949	393	202	6	223	604	1	370	7.18e-84	273
MS.gene53001.t1	MTR_8g104340	38.832	394	188	6	209	597	100	445	3.29e-81	269

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53001.t1	AT3G23070	60.172	816	288	16	1	794	1	801	0.0	902
MS.gene53001.t1	AT4G14510	59.362	721	238	10	112	794	125	828	0.0	826
MS.gene53001.t1	AT4G29750	45.911	697	329	14	134	820	181	839	0.0	573
MS.gene53001.t1	AT4G29750	46.508	673	313	13	134	796	181	816	0.0	567
MS.gene53001.t1	AT3G18390	46.411	599	304	4	180	770	203	792	1.21e-176	531
MS.gene53001.t1	AT3G01370	40.637	753	402	11	110	835	58	792	2.37e-171	522
MS.gene53001.t1	AT5G16180	38.907	604	299	10	177	774	177	716	1.10e-114	365
MS.gene53001.t1	AT5G16180	36.977	430	202	9	177	601	177	542	3.03e-64	225
MS.gene53001.t1	AT3G25440	36.813	182	107	3	595	771	74	252	1.14e-28	119
MS.gene53001.t1	AT3G25440	36.813	182	107	3	595	771	138	316	4.19e-28	119

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Find 186 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATAAATCTCTCTTCAT+CGG	0.542564	1.1:-56266813	None:intergenic
AAACTGGTGGTCTGGTGATT+TGG	0.369744	1.1:+56264843	MS.gene53001:CDS
AAAGGAAGAACTCTGAAGGG+AGG	0.696481	1.1:-56265223	None:intergenic
AAATGGGTGAAGTTGGCGAG+TGG	0.645078	1.1:-56263443	None:intergenic
AACAGAATAAACAGTTATAT+AGG	0.443141	1.1:+56264924	MS.gene53001:CDS
AACCTAATGCAAAATGTGGA+GGG	0.630249	1.1:-56265309	None:intergenic
AACCTCCTCAATTCAGACTC+AGG	0.552435	1.1:-56264066	None:intergenic
AACTCTGATGTATTAATAGC+TGG	0.465778	1.1:-56266261	None:intergenic
AACTCTGTTTCCTTGTACAG+AGG	0.467317	1.1:+56264875	MS.gene53001:CDS
AAGAAATTGTGGTGAAGAAA+CGG	0.481559	1.1:-56263495	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACAAAATTTAGGCTTGT+TGG	-	chr1.1:56266483-56266502	None:intergenic	30.0%
AACTCTGATGTATTAATAGC+TGG	-	chr1.1:56266264-56266283	None:intergenic	30.0%
AAGAAATTGTGGTGAAGAAA+CGG	-	chr1.1:56263498-56263517	None:intergenic	30.0%
AAGAAGGAGTGATAGAAAAA+GGG	+	chr1.1:56263830-56263849	MS.gene53001:CDS	30.0%
AATTGTGCAATCTTCTATGA+TGG	+	chr1.1:56264699-56264718	MS.gene53001:intron	30.0%
ACAAATAGAGAAAGTAAAGG+AGG	+	chr1.1:56268909-56268928	MS.gene53001:CDS	30.0%
ACATATGCACATTTACAAGA+TGG	-	chr1.1:56268645-56268664	None:intergenic	30.0%
ACATTGTGATAAACTTAGTG+TGG	+	chr1.1:56265864-56265883	MS.gene53001:intron	30.0%
ACCAACAATAAATACTACGA+TGG	-	chr1.1:56264520-56264539	None:intergenic	30.0%
ACTGGTCAAGATAATTGTTA+AGG	+	chr1.1:56267126-56267145	MS.gene53001:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	56263430	56269245	56263430	ID=MS.gene53001
chr1.1	mRNA	56263430	56269245	56263430	ID=MS.gene53001.t1;Parent=MS.gene53001
chr1.1	exon	56263430	56264257	56263430	ID=MS.gene53001.t1.exon1;Parent=MS.gene53001.t1
chr1.1	CDS	56263430	56264257	56263430	ID=cds.MS.gene53001.t1;Parent=MS.gene53001.t1
chr1.1	exon	56264839	56265328	56264839	ID=MS.gene53001.t1.exon2;Parent=MS.gene53001.t1
chr1.1	CDS	56264839	56265328	56264839	ID=cds.MS.gene53001.t1;Parent=MS.gene53001.t1
chr1.1	exon	56265410	56265540	56265410	ID=MS.gene53001.t1.exon3;Parent=MS.gene53001.t1
chr1.1	CDS	56265410	56265540	56265410	ID=cds.MS.gene53001.t1;Parent=MS.gene53001.t1
chr1.1	exon	56266087	56266437	56266087	ID=MS.gene53001.t1.exon4;Parent=MS.gene53001.t1
chr1.1	CDS	56266087	56266437	56266087	ID=cds.MS.gene53001.t1;Parent=MS.gene53001.t1
chr1.1	exon	56266719	56266875	56266719	ID=MS.gene53001.t1.exon5;Parent=MS.gene53001.t1
chr1.1	CDS	56266719	56266875	56266719	ID=cds.MS.gene53001.t1;Parent=MS.gene53001.t1
chr1.1	exon	56267065	56267357	56267065	ID=MS.gene53001.t1.exon6;Parent=MS.gene53001.t1
chr1.1	CDS	56267065	56267357	56267065	ID=cds.MS.gene53001.t1;Parent=MS.gene53001.t1
chr1.1	exon	56268738	56268797	56268738	ID=MS.gene53001.t1.exon7;Parent=MS.gene53001.t1
chr1.1	CDS	56268738	56268797	56268738	ID=cds.MS.gene53001.t1;Parent=MS.gene53001.t1
chr1.1	exon	56268907	56268996	56268907	ID=MS.gene53001.t1.exon8;Parent=MS.gene53001.t1
chr1.1	CDS	56268907	56268996	56268907	ID=cds.MS.gene53001.t1;Parent=MS.gene53001.t1
chr1.1	exon	56269126	56269245	56269126	ID=MS.gene53001.t1.exon9;Parent=MS.gene53001.t1
chr1.1	CDS	56269126	56269245	56269126	ID=cds.MS.gene53001.t1;Parent=MS.gene53001.t1

Gene Sequence

>MS.gene53001

ATGGCTCTTCTTCCCACTCGCCAACTTCACCCATTTCACACTTCTCCTAACTTTCATCATTCTCTCCGTTTCTTCACCACAATTTCTTCTTCTTCTTCAATCCATAAAAGCTTCACTTTCAAAACACCCACAAAAAATTTCACTTATCTTTCTTCAAAAAATCCCATTTTTTACCATAAGAGTTTCTGCACTGATACATGGTTAAAACGCTGGAATGAACACAATCGATCGAAACCGCCATGCGGGGTTTTAAATTATCAAGGTTCTGGAAATGGGCATTCATCAAAATCTGATTTTGATAGCTCTGATGATGAGGGTGATGGTGGTAGTAGAATGGATAGAATTGTTGAGAAATTGAAGAAATTTGGGTATGAAAGTGATGAAAATGAGAATATAAAAGAAGAAGGAGTGATAGAAAAAGGGTCAGTGGAGGATATATTTTATGTAGAAGAAGGAATGTTGCCTAATACAAGAGGTGGGTTTTCGCCGGAATCACCATTTGGGATTGGAAGTTATGGAAGTGGTGATGGTGGTGAAGTGAGGTTTCCTTGGGAGAAACCAGTAGTGGATGAAGAAGTTGAAGAGAGGACGAATTCGCGGAAGAAGAGTAAGACTTCTATGGCGGAATTGACTCTTCCTGAGTCTGAATTGAGGAGGTTGCTGAAGTTAACTTTTATGAAGAAGCATAAGACGAGAATCGGTGGTGGTGGTGTTACTCAAGCTGTTGTTGATAAGATTCATGAGAGGTGGAAGACTTCTGAGATTGTTAGGCTTAAGTTTGAAGGTGATGCTGCACTTAACATGAAGAGGATGCATGAGATATTGGAGGTTTGGTTTTTTACCTTTTGCTTCTTGTATATTCAACATTTAATTGTCTTGTTTTCATTGAAAAACCAGTGCAACTTAGGGGATTCGTGAAAACTAGATAGACCAACCCGAATTGTATGCATTTATACCTCAGTGTTTAAATATAGGACCTTGTCGACTAAATCACAGAAATTAAGAAAGTTGGTAGTACTATTGAATTTGTTAGTAATTGATATTATTTCAACATGTTCATCCTTCAAGATAGAGTTTGTTTATGTTTCCATCGTAGTATTTATTGTTGGTTCAGGCGTATGTTTGTAAGGAAATTATTAATGCAGTTGAAAATTCAGATTAGGTCGTATAAAAAGAGACAGACATTTCTCAAGAGGGTCTTATATTTAGGGATGAAGGTAGTATAATATATTTATTTGAAAAACTCTCCAATCCAATGTAGTGATGCGTAATTGTGCAATCTTCTATGATGGATTTCATATATATTTTGTAGACATTTCACTGGAGTCTTCTTCAATTGTTCTTTCATACCTGCATCCTTGACTATCAATAACTGTGGCTTTATTGTTAATTCTTGATACTACATTCAGAAAAAAACTGGTGGTCTGGTGATTTGGAGGTCTGGCAACTCTGTTTCCTTGTACAGAGGTGTGAGCTACAAGGATCCTTCAATACAACAGAATAAACAGTTATATAGGAAAAACGAGAAACCTTCGAAGTTTCTGTCAGCACCTTCGAATGATTTTGAAGTGAAGCCTTCTGAATTTACTTCTGATTCTGAGACAAAAACATCGTTGGAAAAATTGGAATCTACAAATGATCAGAAAGAAAAAGTTAATCTGCCAAAACTCAGTTATGAAGATGAAGTAGACAAGTTATTGGATGGTCTAGGTCCTAGATATACAGATTGGCCTGGATGTGAGCCACTGCCTGTCGATGCGGATATGCTTCCTCCAACTGTTCCTGGTTACCAACCTCCCTTCAGAGTTCTTCCTTTCGGAGTGAGACCGACACTTGGTTTCAAGGAGGCAACTTCTCTACGAAGGATTGCTAGGGGACTCCCTCCACATTTTGCATTAGGTTGGTCATCATTTCTGTTATGCAGTTATGCATGTGAAGTTTATAATTTCATTGTGATCATAAATTAATTGTGAAATGTAGGTAGAAACAAGCAGCTTCAAGGTTTAGCTGCAGCCATGATCAAACTGTGGGAAAAAAGTTCTATAGCGAAAGTTGCACTCAAACGTGGTGTGCAGCTAACTACCAGTGAGAGAATGGCAGAAGAGATCAAGGTGATTTATCATGTTCTCCCGGTTCAACTAATAAATTTTGTTGACTTGTTTTTTAGTTTCATTTTCTTAAGCAATCTCTTCACTGTTCATGCATCCTTGGTATGCCATTCACTAAAGCATAGATTTTCCTTCTGTTTGAAAATGTACACAATTTTTTGCATCGTTTGCTATATGTAGGCAGCCATTAAGTTGACATTAAGTATAAAGAGGATGAAACCAGTACACTATGTTAGTTTGTAATCCATAAGTGCTAGGGCACTTACACTGAGAAATTAATTAATGCATCTCAACATCTATTACGATCAGCATTTCATATTGACTTAACATTGTGATAAACTTAGTGTGGATTAGTGCATAAAAGTCAGCAAGATAGTTTTGCAATTAGCTTGGTGCTGATGGAATTTTCTGCTAACATCAGATATAAGTATTAAGTTATAGGCTTTTTAACACAAACAAAATATGATCAGGTAGTTTGTTATATGCATCTGTACTACACCACTATGTGAGGATTTGTTGATGAATATTTTTTTTTATTTCCGGATGCAGAAACTGACAGGTGGCATAATGCTCTCCAGAAATAAAGACTTCTTGGTCTTTTATCGAGGGAAGAATTTTTTATCACCAGATGTCACTCAAGCCTTGCTAGAGAGGGAAAGAATGGCCAAAGCAATGCAGGATGAGGAGGAGCATGCAAGATTGAGAGCGTCATCATTGATCTTACCAGCTATTAATACATCAGAGTTGTCAGCGGAGGCTGGGACTCTTGGCGAAACTTTGGATGCAGATGCAAAGTGGGGAAAGACATTGGATGAGCGTCACGAGCAAAAAGTTATGAGAGAAGTAGAACAACTACGGCATGCCAACATCGTTAGAAAGTTAGAAGAGAAGCTTTCACTTGTAAGTCCTTCAAGTTTATATCTGAAATTGATTCCCTAATTACCAACAAGCCTAAATTTTGTGTTATAGCTGTTGGACATATTTGGTTTTTGAATCTGTTTAATTCTAAGACTCATATAGAACCCCAGATATTCATTATTTTCAATATTATGTACACAATGTTAGTGGTATCGGAGGTTTTGTTATTCATTATTGTCGACTTTTGGTACTTAATTTCACACTAGGATTATTTTCCAGTTTAGAATTTACGTGATTGTGATCCCTGGATTTTTGCTTACCAGGCTGAAAGAAAGATAAGGAGAGCTGAAAGAGCCCTAATGAAGGTGGAGGTGTCTTTGAAGCCATCAGAAAGCAGAGCAGACCCTGAAAGTATAACCGATGAAGAGAGATTTATGTTTCGCAAGTTAGGATTGCGGATGAAAGCTTTCTTACTTCTTGGTAGAGCTCTATCTAGATGATATTTTCTTACTCTGTTAGAACCACTTTGATTCACTTCACCACATGCTAAGGGTGTGATGAAAGAAACCAGATAGAAAAATTTACATTACAAATAAATCTGATTCATGATAATGATATGCGAGGGTACTTTAGTTGTGGTATCAAAATGAATGTAATTCATGGTTGCAGGTAGACGTGGAGTTTTTGACGGTACTATCGAAAACATGCACTTGCACTGGAAGTACCGGGAACTGGTCAAGATAATTGTTAAGGCTAACAACTTTGAACATGTAAAAAAAATTGCACTAGCACTTGAAGCTGAGAGTGGTGGTGTTCTGGTTTCAGTTGACAAAGTTTCAAAAGGATATTCTATACTTGTTTACCGGGGAAAGGATTACCAGCGCCCTTCAATGATGAGACCGAAGAATCTCTTGACAAAGAGAAAGGCTTTGGCACGTTCAATCGAGCTTCAACGACATGAGGTATGCATACAGACTTATTTCTTCCAATCAAATGCTAATTGTAATATTTTCCACTTCAATTTGTTGCATTCGAATAGAAACTGGTACCAATTAATATAAATACTGTATAACAACTGACTTTTATTGAGTAATCTTGGGAGAATTGTTTTCAATCAGAGATAGAATACAGATTTACAAACTTTTACAAAAAGGAATATTGTGCTGGAACTAGGAATTGCAAGGTCACGTTTCTACCAAGTCTTTGAGAGCTTGGTTCTCTCCCACCCAATTAACCACTTGATAACCCACTCTGCCTTCGCTTTCCTATTTATTCTGAATTCAATACACATAACTAATAGCATAATTAATTAGCAAATGTAATTATATAATACACAATTAACTGCAGTAATTGATCAAAGTCACTTTTGACTGTTTCAACCCCTCCTTCTGTATTGTTCCTTTATCAGATATCTTAACACATTCCACTCCCGATTAGATATTTAACATACATAAAAGTTTATCAATTTGGTGCCTAATACTCCCCATTCTTTCATTTTTTCTGGCAAAACAATTTTTTTTTTTGGCTTAGTTTGTTGTGTTGGGTATGCAATGTTTATCCTTAATGTTATAGAAAATCTTTTGTTAACAAAGTTAAACATAAATAGTTTAGATGAAAAAAATTTAGAAATGTCAAGATTACTCTTAGAATTTGGGTTGAGTCTAAATCAACCTTAGAAAACCGGCTTGTAAGGTGAGGGCTGCCCAATCTTTATAAACACTACACAGACCATATGATATGTCTGGGCAATGTGAGACTAAATCCACCCCTTAACACCCAACACAATGAAGGTGTTGAAGGTTGCAATGATGGCAACCCAAATGCCACAATTAGGGGGCTACGGCGGATTGCAATAAAGGCGAAATTTCCAACACACCCCCTCACACTTAGGACCCAATGAGCTTGACGCATGGACGACACAACAAGCCCAACAACAGATCTAGGACAGATTCTTAGAATTTGGGTTGAGCCTAACTCAACCTTACGAATCTGGCTTGTAAGGTGAGGGCAGCCCAATCTTTATAAACACTACACGTGGTCTAGGCAACATGGGACTAATTCCATCCCTTAAACCCAACACAACGAAGGTGTTGGAGGTTGCAATGAAGGCAACTCAAATTAGGCAGCTAGGGGCGGACCGCAATGAAGGCGGAATTTCCAACAAGGACTACCAAGATATAGTGGGTAAATTGATAAAGGATATATCAGATAGAAGATTTTACTTTAATTCTTTTATATTTATTTCTCCATCTTGTAAATGTGCATATGTATACGCGTGTTTTTTTGTTGTTCTTTTCATGTTCATAATAAATGCTCCTTTGCCTCATTTTATTGACAAACAGGCACTTTCAAGTCATATTTCAACTTTGCAAAGTAAAGTGGAGAAGTTAAGATCCGAAATAGTACGTACTATTGATAGCTACATTTTTAGCATCTCATTACCATCTAAGCTGTATATTATATGGAAACCTAGGTTTCCTGATCTTTGTTTGTCTGGACCAATTTTCACAGGAACAAATAGAGAAAGTAAAGGAGGAAGGAGATGAAGCATTGTATAACAGATTAGATTCGGCTTATTCTACAGATGATGATAACTCTGAGGTCTCTCTCTCTCTCTCACACACCACACACACACACACACACACACACACACACACACACACAGCACTGTAAGAATTTATGACACTGCATTTCCTTTTATATTTGTGTGTAAATATCTTATACATGTAGGCGGAGGATGATGAGGAAGAAGTTGACGCATATCTTCAGAGTGACAATGATGAAAATGATAGTGAAGTTGAAAGTGATGCTATTAATTTCCAACCTGAGGAATTTGCCTCACAAAGTTGA

Protein sequence

>MS.gene53001.t1

MALLPTRQLHPFHTSPNFHHSLRFFTTISSSSSIHKSFTFKTPTKNFTYLSSKNPIFYHKSFCTDTWLKRWNEHNRSKPPCGVLNYQGSGNGHSSKSDFDSSDDEGDGGSRMDRIVEKLKKFGYESDENENIKEEGVIEKGSVEDIFYVEEGMLPNTRGGFSPESPFGIGSYGSGDGGEVRFPWEKPVVDEEVEERTNSRKKSKTSMAELTLPESELRRLLKLTFMKKHKTRIGGGGVTQAVVDKIHERWKTSEIVRLKFEGDAALNMKRMHEILEKKTGGLVIWRSGNSVSLYRGVSYKDPSIQQNKQLYRKNEKPSKFLSAPSNDFEVKPSEFTSDSETKTSLEKLESTNDQKEKVNLPKLSYEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGFKEATSLRRIARGLPPHFALGRNKQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIKKLTGGIMLSRNKDFLVFYRGKNFLSPDVTQALLERERMAKAMQDEEEHARLRASSLILPAINTSELSAEAGTLGETLDADAKWGKTLDERHEQKVMREVEQLRHANIVRKLEEKLSLAERKIRRAERALMKVEVSLKPSESRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQRPSMMRPKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKLRSEIEQIEKVKEEGDEALYNRLDSAYSTDDDNSEAEDDEEEVDAYLQSDNDENDSEVESDAINFQPEEFASQS