Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95062.t1 | XP_013458698.1 | 89.4 | 198 | 20 | 1 | 29 | 226 | 104 | 300 | 3.80E-92 | 347.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95062.t1 | P37574 | 31.9 | 141 | 93 | 3 | 85 | 224 | 3 | 141 | 1.8e-10 | 67.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95062.t1 | A0A072V3J1 | 89.4 | 198 | 20 | 1 | 29 | 226 | 104 | 300 | 2.7e-92 | 347.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene95062 | 0.817857 | 2.65E-52 | -1.69E-46 |
| MS.gene049356 | MS.gene95062 | 0.820646 | 6.15E-53 | -1.69E-46 |
| MS.gene049661 | MS.gene95062 | 0.800535 | 1.38E-48 | -1.69E-46 |
| MS.gene049758 | MS.gene95062 | 0.815554 | 8.71E-52 | -1.69E-46 |
| MS.gene050122 | MS.gene95062 | 0.81095 | 8.93E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene95062 | 0.869641 | 2.66E-66 | -1.69E-46 |
| MS.gene050397 | MS.gene95062 | 0.805371 | 1.38E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene95062 | 0.803847 | 2.87E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene95062 | 0.861636 | 8.92E-64 | -1.69E-46 |
| MS.gene05105 | MS.gene95062 | 0.841695 | 4.07E-58 | -1.69E-46 |
| MS.gene051360 | MS.gene95062 | 0.839991 | 1.14E-57 | -1.69E-46 |
| MS.gene051860 | MS.gene95062 | 0.847338 | 1.23E-59 | -1.69E-46 |
| MS.gene051877 | MS.gene95062 | 0.818509 | 1.89E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene95062 | -0.82213 | 2.79E-53 | -1.69E-46 |
| MS.gene052025 | MS.gene95062 | 0.81186 | 5.67E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene95062 | 0.802695 | 4.97E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene95062 | 0.836769 | 7.71E-57 | -1.69E-46 |
| MS.gene052207 | MS.gene95062 | 0.828308 | 9.66E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene95062 | 0.856142 | 3.93E-62 | -1.69E-46 |
| MS.gene052310 | MS.gene95062 | 0.801601 | 8.34E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene95062 | 0.808389 | 3.17E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene95062 | 0.826794 | 2.23E-54 | -1.69E-46 |
| MS.gene053209 | MS.gene95062 | 0.831214 | 1.90E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene95062 | 0.834042 | 3.77E-56 | -1.69E-46 |
| MS.gene054010 | MS.gene95062 | 0.812808 | 3.52E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene95062 | 0.82838 | 9.29E-55 | -1.69E-46 |
| MS.gene054012 | MS.gene95062 | 0.810823 | 9.52E-51 | -1.69E-46 |
| MS.gene054013 | MS.gene95062 | 0.806064 | 9.86E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene95062 | 0.80614 | 9.51E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene95062 | 0.839864 | 1.23E-57 | -1.69E-46 |
| MS.gene055116 | MS.gene95062 | 0.863313 | 2.72E-64 | -1.69E-46 |
| MS.gene055277 | MS.gene95062 | 0.80494 | 1.70E-49 | -1.69E-46 |
| MS.gene055390 | MS.gene95062 | 0.805383 | 1.37E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene95062 | 0.823176 | 1.59E-53 | -1.69E-46 |
| MS.gene055428 | MS.gene95062 | 0.806059 | 9.89E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene95062 | 0.844882 | 5.74E-59 | -1.69E-46 |
| MS.gene055859 | MS.gene95062 | 0.803658 | 3.14E-49 | -1.69E-46 |
| MS.gene05594 | MS.gene95062 | 0.802094 | 6.60E-49 | -1.69E-46 |
| MS.gene05602 | MS.gene95062 | 0.849063 | 4.11E-60 | -1.69E-46 |
| MS.gene056191 | MS.gene95062 | 0.8121 | 5.02E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene95062 | 0.84681 | 1.72E-59 | -1.69E-46 |
| MS.gene056410 | MS.gene95062 | 0.839041 | 2.01E-57 | -1.69E-46 |
| MS.gene056511 | MS.gene95062 | 0.815365 | 9.60E-52 | -1.69E-46 |
| MS.gene056612 | MS.gene95062 | 0.803661 | 3.13E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene95062 | 0.810414 | 1.17E-50 | -1.69E-46 |
| MS.gene056902 | MS.gene95062 | 0.836677 | 8.13E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene95062 | 0.819147 | 1.35E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene95062 | 0.80979 | 1.59E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene95062 | 0.815554 | 8.71E-52 | -1.69E-46 |
| MS.gene057448 | MS.gene95062 | 0.80644 | 8.22E-50 | -1.69E-46 |
| MS.gene057450 | MS.gene95062 | 0.806353 | 8.57E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene95062 | 0.827217 | 1.77E-54 | -1.69E-46 |
| MS.gene057476 | MS.gene95062 | 0.805362 | 1.38E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene95062 | 0.821145 | 4.72E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene95062 | 0.81451 | 1.49E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene95062 | 0.819308 | 1.24E-52 | -1.69E-46 |
| MS.gene058082 | MS.gene95062 | 0.817045 | 4.04E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene95062 | 0.83723 | 5.88E-57 | -1.69E-46 |
| MS.gene058142 | MS.gene95062 | 0.804162 | 2.47E-49 | -1.69E-46 |
| MS.gene05842 | MS.gene95062 | 0.810955 | 8.91E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene95062 | 0.837772 | 4.27E-57 | -1.69E-46 |
| MS.gene058700 | MS.gene95062 | 0.823984 | 1.03E-53 | -1.69E-46 |
| MS.gene058710 | MS.gene95062 | 0.808543 | 2.94E-50 | -1.69E-46 |
| MS.gene058787 | MS.gene95062 | 0.806009 | 1.01E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene95062 | 0.818061 | 2.39E-52 | -1.69E-46 |
| MS.gene058948 | MS.gene95062 | 0.803191 | 3.92E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene95062 | 0.851459 | 8.75E-61 | -1.69E-46 |
| MS.gene059294 | MS.gene95062 | 0.813745 | 2.19E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene95062 | 0.833574 | 4.93E-56 | -1.69E-46 |
| MS.gene059597 | MS.gene95062 | 0.811341 | 7.35E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene95062 | 0.803581 | 3.26E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene95062 | 0.841112 | 5.79E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene95062 | 0.839377 | 1.64E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene95062 | 0.839598 | 1.44E-57 | -1.69E-46 |
| MS.gene059711 | MS.gene95062 | 0.800762 | 1.24E-48 | -1.69E-46 |
| MS.gene05984 | MS.gene95062 | 0.841694 | 4.07E-58 | -1.69E-46 |
| MS.gene06037 | MS.gene95062 | 0.811925 | 5.49E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene95062 | 0.807411 | 5.12E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene95062 | 0.841143 | 5.68E-58 | -1.69E-46 |
| MS.gene061049 | MS.gene95062 | 0.820531 | 6.53E-53 | -1.69E-46 |
| MS.gene061051 | MS.gene95062 | -0.800186 | 1.62E-48 | -1.69E-46 |
| MS.gene061154 | MS.gene95062 | 0.834662 | 2.63E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95062.t1 | MTR_4g134410 | 89.394 | 198 | 20 | 1 | 29 | 226 | 104 | 300 | 1.73e-129 | 369 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95062.t1 | AT2G02410 | 71.429 | 189 | 46 | 4 | 38 | 226 | 7 | 187 | 1.07e-91 | 269 |
| MS.gene95062.t1 | AT2G02410 | 71.429 | 189 | 46 | 4 | 38 | 226 | 7 | 187 | 1.07e-91 | 269 |
| MS.gene95062.t1 | AT2G02410 | 66.667 | 210 | 56 | 5 | 23 | 226 | 7 | 208 | 1.33e-91 | 269 |
| MS.gene95062.t1 | AT2G02410 | 71.429 | 189 | 46 | 4 | 38 | 226 | 45 | 225 | 4.08e-91 | 269 |
| MS.gene95062.t1 | AT2G02410 | 71.429 | 189 | 46 | 4 | 38 | 226 | 93 | 273 | 1.23e-90 | 269 |
| MS.gene95062.t1 | AT2G02410 | 62.212 | 217 | 46 | 5 | 38 | 226 | 93 | 301 | 1.27e-84 | 255 |
| MS.gene95062.t1 | AT2G02410 | 71.875 | 160 | 37 | 4 | 38 | 197 | 45 | 196 | 3.44e-74 | 224 |
| MS.gene95062.t1 | AT2G02410 | 71.875 | 160 | 37 | 4 | 38 | 197 | 93 | 244 | 8.26e-74 | 225 |
| MS.gene95062.t1 | AT2G02410 | 71.875 | 160 | 37 | 4 | 38 | 197 | 93 | 244 | 8.26e-74 | 225 |
| MS.gene95062.t1 | AT2G02410 | 67.669 | 133 | 35 | 4 | 38 | 170 | 45 | 169 | 1.32e-53 | 171 |
| MS.gene95062.t1 | AT2G02410 | 67.669 | 133 | 35 | 4 | 38 | 170 | 93 | 217 | 2.13e-53 | 172 |
| MS.gene95062.t1 | AT2G02410 | 67.669 | 133 | 35 | 4 | 38 | 170 | 93 | 217 | 2.13e-53 | 172 |
| MS.gene95062.t1 | AT2G02410 | 55.901 | 161 | 35 | 5 | 38 | 170 | 93 | 245 | 2.56e-47 | 157 |
Find 57 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTAGGTTTCAGCTTTAA+AGG | 0.156682 | 8.2:-403069 | MS.gene95062:intron |
| AGGATGGTTGCCCCAAAGTC+TGG | 0.335763 | 8.2:-403046 | MS.gene95062:CDS |
| TTGGCGTTAGAAGTGATTCT+AGG | 0.343874 | 8.2:+403746 | None:intergenic |
| GGAAGAATATTCCTTGTGAT+TGG | 0.354869 | 8.2:+403244 | None:intergenic |
| ACACAAATCAGCTGGGTCTT+GGG | 0.361413 | 8.2:-403472 | MS.gene95062:CDS |
| TAACCATCAACAAGCAAAAC+AGG | 0.364806 | 8.2:+403422 | None:intergenic |
| GTTACAATGTCTGTGGATAT+TGG | 0.373030 | 8.2:-403403 | MS.gene95062:CDS |
| GAAGAATATTCCTTGTGATT+GGG | 0.378710 | 8.2:+403245 | None:intergenic |
| TAAGTTCGTCAATAAGCTTC+TGG | 0.389972 | 8.2:+403333 | None:intergenic |
| GAAGTGATTCTAGGAGGAGT+TGG | 0.391837 | 8.2:+403755 | None:intergenic |
| GTATTTGATGCCATGATGTC+TGG | 0.393030 | 8.2:-403272 | MS.gene95062:CDS |
| ATTCTAGGAGGAGTTGGAGT+TGG | 0.400020 | 8.2:+403761 | None:intergenic |
| GGAGGAGTTGGAGTTGGAGT+TGG | 0.403011 | 8.2:+403767 | None:intergenic |
| ACCTTCGCTTCCTCAAGATA+TGG | 0.413759 | 8.2:-403718 | MS.gene95062:CDS |
| AGAAGTGACGACCCAGACTT+TGG | 0.415939 | 8.2:+403034 | None:intergenic |
| GAAGTGACGACCCAGACTTT+GGG | 0.421042 | 8.2:+403035 | None:intergenic |
| TACACAAATCAGCTGGGTCT+TGG | 0.424310 | 8.2:-403473 | MS.gene95062:CDS |
| GTGTAGTAGAGGGAGGTTGT+TGG | 0.441657 | 8.2:+403491 | None:intergenic |
| GAGGAAGCGAAGGTTCTGTT+TGG | 0.441688 | 8.2:+403727 | None:intergenic |
| CTGATGCATCTGCTGATACA+TGG | 0.474850 | 8.2:-403199 | MS.gene95062:CDS |
| AAAGAAGAAGGCCGAGAAAG+AGG | 0.474951 | 8.2:-403549 | MS.gene95062:CDS |
| AAGAATATTCCTTGTGATTG+GGG | 0.489548 | 8.2:+403246 | None:intergenic |
| CCTCTACTACACAAATCAGC+TGG | 0.492718 | 8.2:-403480 | MS.gene95062:CDS |
| CACAAATCAGCTGGGTCTTG+GGG | 0.493462 | 8.2:-403471 | MS.gene95062:CDS |
| ATCCGCAAGATCCTCTTTCT+CGG | 0.497073 | 8.2:+403538 | None:intergenic |
| TGTTTGGAGCAGCAAGGCAT+TGG | 0.500774 | 8.2:-402740 | MS.gene95062:CDS |
| GATCACGATAGAGGTCAGTT+TGG | 0.509125 | 8.2:+403513 | None:intergenic |
| GTAGATCAAGGCATCACAAA+AGG | 0.512172 | 8.2:-402467 | MS.gene95062:intron |
| AATCACAAGGAATATTCTTC+CGG | 0.528595 | 8.2:-403242 | MS.gene95062:CDS |
| CCAGCTGATTTGTGTAGTAG+AGG | 0.530779 | 8.2:+403480 | None:intergenic |
| TGAGAAAACAATGTCGATGC+CGG | 0.535047 | 8.2:+403223 | None:intergenic |
| GTTTCAGCTTTAAAGGAGGA+TGG | 0.538423 | 8.2:-403062 | MS.gene95062:CDS |
| CACCTTTAGTATGCTTAGAG+AGG | 0.540405 | 8.2:-403309 | MS.gene95062:CDS |
| AGGTTGTTGGATCACGATAG+AGG | 0.546658 | 8.2:+403504 | None:intergenic |
| GGATGGTTGCCCCAAAGTCT+GGG | 0.556380 | 8.2:-403045 | MS.gene95062:CDS |
| TGCCTTGCTGCTCCAAACAA+AGG | 0.558029 | 8.2:+402744 | None:intergenic |
| GACCTCTCTAAGCATACTAA+AGG | 0.559341 | 8.2:+403307 | None:intergenic |
| ATTGGGGAATCCAGACATCA+TGG | 0.573403 | 8.2:+403262 | None:intergenic |
| CTCTACTACACAAATCAGCT+GGG | 0.575051 | 8.2:-403479 | MS.gene95062:CDS |
| GGCCGAGAAAGAGGATCTTG+CGG | 0.579972 | 8.2:-403540 | MS.gene95062:CDS |
| GGCCTTTGTTTGGAGCAGCA+AGG | 0.582037 | 8.2:-402746 | MS.gene95062:CDS |
| CAGCTGATTTGTGTAGTAGA+GGG | 0.582819 | 8.2:+403481 | None:intergenic |
| TCCATATCTTGAGGAAGCGA+AGG | 0.583867 | 8.2:+403717 | None:intergenic |
| AAGAGATGCTTCAAGAGCAA+AGG | 0.590832 | 8.2:-402438 | MS.gene95062:intron |
| AAGTGACGACCCAGACTTTG+GGG | 0.593977 | 8.2:+403036 | None:intergenic |
| TACCTACCTTCCATATCTTG+AGG | 0.597905 | 8.2:+403708 | None:intergenic |
| ACAAATCAGCTGGGTCTTGG+GGG | 0.604764 | 8.2:-403470 | MS.gene95062:CDS |
| TGTCAACAACAAGCAGCACA+TGG | 0.612468 | 8.2:-403005 | MS.gene95062:CDS |
| GTCTGGATTCCCCAATCACA+AGG | 0.613410 | 8.2:-403255 | MS.gene95062:CDS |
| CTGATTTGTGTAGTAGAGGG+AGG | 0.619033 | 8.2:+403484 | None:intergenic |
| GTTGATGGTTACAATGTCTG+TGG | 0.627615 | 8.2:-403410 | MS.gene95062:CDS |
| GCGTTAGAAGTGATTCTAGG+AGG | 0.630133 | 8.2:+403749 | None:intergenic |
| TCGCTTCCTCAAGATATGGA+AGG | 0.635284 | 8.2:-403714 | MS.gene95062:intron |
| TTAGGTTTCAGCTTTAAAGG+AGG | 0.636930 | 8.2:-403066 | MS.gene95062:intron |
| GATCAAGGCATCACAAAAGG+AGG | 0.644648 | 8.2:-402464 | MS.gene95062:CDS |
| AACCATCAACAAGCAAAACA+GGG | 0.648456 | 8.2:+403423 | None:intergenic |
| CAGCAAGGCATTGGTAACCG+AGG | 0.676741 | 8.2:-402731 | MS.gene95062:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATTATTATTTATTT+AGG | - | chr8.2:402331-402350 | MS.gene95062:intron | 0.0% |
| !! | AAAATCACAATAGATAAAAC+TGG | + | chr8.2:403704-403723 | None:intergenic | 20.0% |
| !! | AACAAAACGAATATATCTAA+TGG | + | chr8.2:403579-403598 | None:intergenic | 20.0% |
| !! | CATTTGAAAAAAAGAAGAAA+AGG | + | chr8.2:403121-403140 | None:intergenic | 20.0% |
| !!! | TTGAATCTCAAATTTTTGAA+TGG | - | chr8.2:403299-403318 | MS.gene95062:CDS | 20.0% |
| ! | ACCATGTAAAATATCATTGA+AGG | + | chr8.2:403445-403464 | None:intergenic | 25.0% |
| ! | CTTAATGAGTATCTAACTAT+GGG | - | chr8.2:403743-403762 | MS.gene95062:CDS | 25.0% |
| ! | TATTCTTTACTCCTCAATTT+AGG | - | chr8.2:402871-402890 | MS.gene95062:intron | 25.0% |
| ! | TGTAATTGAGATTTATACTC+TGG | - | chr8.2:403174-403193 | MS.gene95062:intron | 25.0% |
| ! | TTAATGAGTATCTAACTATG+GGG | - | chr8.2:403744-403763 | MS.gene95062:CDS | 25.0% |
| !! | AATTTAGGTTTCAGCTTTAA+AGG | - | chr8.2:402886-402905 | MS.gene95062:intron | 25.0% |
| !! | CTCAAAAAACATTTTCTCAA+TGG | - | chr8.2:402581-402600 | MS.gene95062:intron | 25.0% |
| !! | GTCATATTAATGTTTTACCT+CGG | + | chr8.2:403244-403263 | None:intergenic | 25.0% |
| !! | TCCTTCAATGATATTTTACA+TGG | - | chr8.2:403441-403460 | MS.gene95062:CDS | 25.0% |
| !! | TTTTATGATTTTTCGCTGTA+TGG | - | chr8.2:403606-403625 | MS.gene95062:intron | 25.0% |
| !!! | TTCTTCTTTTTTTCAAATGC+TGG | - | chr8.2:403122-403141 | MS.gene95062:intron | 25.0% |
| AAGAATATTCCTTGTGATTG+GGG | + | chr8.2:402712-402731 | None:intergenic | 30.0% | |
| AATCACAAGGAATATTCTTC+CGG | - | chr8.2:402713-402732 | MS.gene95062:intron | 30.0% | |
| CCATAGTTAGATACTCATTA+AGG | + | chr8.2:403745-403764 | None:intergenic | 30.0% | |
| CCTTAATGAGTATCTAACTA+TGG | - | chr8.2:403742-403761 | MS.gene95062:CDS | 30.0% | |
| CTTGCATTGTAATTCTTGAT+GGG | - | chr8.2:403780-403799 | MS.gene95062:CDS | 30.0% | |
| GAAGAATATTCCTTGTGATT+GGG | + | chr8.2:402713-402732 | None:intergenic | 30.0% | |
| GAGAGAACAATAGTTATGAT+TGG | + | chr8.2:403041-403060 | None:intergenic | 30.0% | |
| GTGACAAATTGACAATCATT+TGG | - | chr8.2:403406-403425 | MS.gene95062:CDS | 30.0% | |
| TAAAGCTGAAACCTAAATTG+AGG | + | chr8.2:402885-402904 | None:intergenic | 30.0% | |
| TAGTTACCGTAAAAAGAAGA+AGG | - | chr8.2:402394-402413 | MS.gene95062:intron | 30.0% | |
| TGTCACACTAATCAAAGATT+TGG | + | chr8.2:403392-403411 | None:intergenic | 30.0% | |
| TTGTTAATCTGTGCAAACTA+AGG | - | chr8.2:403062-403081 | MS.gene95062:CDS | 30.0% | |
| ! | TGATACATGGATTGAAAAAG+AGG | - | chr8.2:402769-402788 | MS.gene95062:intron | 30.0% |
| ! | TTATACTCTGGATGTTTTCA+GGG | - | chr8.2:403186-403205 | MS.gene95062:intron | 30.0% |
| ! | TTTATACTCTGGATGTTTTC+AGG | - | chr8.2:403185-403204 | MS.gene95062:intron | 30.0% |
| ! | TTTTTACGGTAACTAGTAGA+AGG | + | chr8.2:402389-402408 | None:intergenic | 30.0% |
| !! | GGTCTTGTTTATTACTTGTT+TGG | - | chr8.2:403462-403481 | MS.gene95062:CDS | 30.0% |
| !! | TTAGTTTGCACAGATTAACA+AGG | + | chr8.2:403063-403082 | None:intergenic | 30.0% |
| AACCATCAACAAGCAAAACA+GGG | + | chr8.2:402535-402554 | None:intergenic | 35.0% | |
| ACATGACCATACAGTTAAAG+AGG | - | chr8.2:403357-403376 | MS.gene95062:CDS | 35.0% | |
| CTTGTTTGGATAGTAGATCA+AGG | - | chr8.2:403476-403495 | MS.gene95062:CDS | 35.0% | |
| GCTTGCATTGTAATTCTTGA+TGG | - | chr8.2:403779-403798 | MS.gene95062:CDS | 35.0% | |
| GGAAGAATATTCCTTGTGAT+TGG | + | chr8.2:402714-402733 | None:intergenic | 35.0% | |
| GTTACAATGTCTGTGGATAT+TGG | - | chr8.2:402552-402571 | MS.gene95062:intron | 35.0% | |
| TAACCATCAACAAGCAAAAC+AGG | + | chr8.2:402536-402555 | None:intergenic | 35.0% | |
| TAAGTTCGTCAATAAGCTTC+TGG | + | chr8.2:402625-402644 | None:intergenic | 35.0% | |
| TCTGAACCTCTTTAACTGTA+TGG | + | chr8.2:403366-403385 | None:intergenic | 35.0% | |
| ! | TATACTCTGGATGTTTTCAG+GGG | - | chr8.2:403187-403206 | MS.gene95062:CDS | 35.0% |
| !! | TTAGGTTTCAGCTTTAAAGG+AGG | - | chr8.2:402889-402908 | MS.gene95062:intron | 35.0% |
| AAGAGATGCTTCAAGAGCAA+AGG | - | chr8.2:403517-403536 | MS.gene95062:CDS | 40.0% | |
| CACCTTTAGTATGCTTAGAG+AGG | - | chr8.2:402646-402665 | MS.gene95062:intron | 40.0% | |
| CTCTACTACACAAATCAGCT+GGG | - | chr8.2:402476-402495 | MS.gene95062:intron | 40.0% | |
| GACCTCTCTAAGCATACTAA+AGG | + | chr8.2:402651-402670 | None:intergenic | 40.0% | |
| GTATTTGATGCCATGATGTC+TGG | - | chr8.2:402683-402702 | MS.gene95062:intron | 40.0% | |
| TACCTACCTTCCATATCTTG+AGG | + | chr8.2:402250-402269 | None:intergenic | 40.0% | |
| TGAGAAAACAATGTCGATGC+CGG | + | chr8.2:402735-402754 | None:intergenic | 40.0% | |
| TGCACAGGCAATTAATACAC+AGG | + | chr8.2:403639-403658 | None:intergenic | 40.0% | |
| TTCCTCAAGATATGGAAGGT+AGG | - | chr8.2:402245-402264 | MS.gene95062:intron | 40.0% | |
| TTGGCGTTAGAAGTGATTCT+AGG | + | chr8.2:402212-402231 | None:intergenic | 40.0% | |
| ! | GTAGATCAAGGCATCACAAA+AGG | - | chr8.2:403488-403507 | MS.gene95062:CDS | 40.0% |
| ! | TATTGCATCTCAAGTTGCAC+AGG | + | chr8.2:403654-403673 | None:intergenic | 40.0% |
| ! | TCTCGGCCTTCTTCTTTTTA+CGG | + | chr8.2:402403-402422 | None:intergenic | 40.0% |
| ! | TTATGGCAGAACTTTTCTGC+AGG | + | chr8.2:403808-403827 | None:intergenic | 40.0% |
| !! | ATACTCTGGATGTTTTCAGG+GGG | - | chr8.2:403188-403207 | MS.gene95062:CDS | 40.0% |
| !! | CAGCTGATTTGTGTAGTAGA+GGG | + | chr8.2:402477-402496 | None:intergenic | 40.0% |
| !! | GTTGATGGTTACAATGTCTG+TGG | - | chr8.2:402545-402564 | MS.gene95062:intron | 40.0% |
| !! | GTTTCAGCTTTAAAGGAGGA+TGG | - | chr8.2:402893-402912 | MS.gene95062:intron | 40.0% |
| !!! | GAGTGCTGGATTTTCGTTTT+TGG | + | chr8.2:402361-402380 | None:intergenic | 40.0% |
| AAAGAAGAAGGCCGAGAAAG+AGG | - | chr8.2:402406-402425 | MS.gene95062:intron | 45.0% | |
| ACACAAATCAGCTGGGTCTT+GGG | - | chr8.2:402483-402502 | MS.gene95062:intron | 45.0% | |
| ACCTTCGCTTCCTCAAGATA+TGG | - | chr8.2:402237-402256 | MS.gene95062:intron | 45.0% | |
| AGGTTGTTGGATCACGATAG+AGG | + | chr8.2:402454-402473 | None:intergenic | 45.0% | |
| ATCCGCAAGATCCTCTTTCT+CGG | + | chr8.2:402420-402439 | None:intergenic | 45.0% | |
| ATTGGGGAATCCAGACATCA+TGG | + | chr8.2:402696-402715 | None:intergenic | 45.0% | |
| CCTCTACTACACAAATCAGC+TGG | - | chr8.2:402475-402494 | MS.gene95062:intron | 45.0% | |
| CGGTAACTAGTAGAAGGTCT+TGG | + | chr8.2:402383-402402 | None:intergenic | 45.0% | |
| CTGATGCATCTGCTGATACA+TGG | - | chr8.2:402756-402775 | MS.gene95062:intron | 45.0% | |
| GATCACGATAGAGGTCAGTT+TGG | + | chr8.2:402445-402464 | None:intergenic | 45.0% | |
| GCGTTAGAAGTGATTCTAGG+AGG | + | chr8.2:402209-402228 | None:intergenic | 45.0% | |
| TACACAAATCAGCTGGGTCT+TGG | - | chr8.2:402482-402501 | MS.gene95062:intron | 45.0% | |
| TCCATATCTTGAGGAAGCGA+AGG | + | chr8.2:402241-402260 | None:intergenic | 45.0% | |
| TCGCTTCCTCAAGATATGGA+AGG | - | chr8.2:402241-402260 | MS.gene95062:intron | 45.0% | |
| TGTCAACAACAAGCAGCACA+TGG | - | chr8.2:402950-402969 | MS.gene95062:intron | 45.0% | |
| ! | ATTCTAGGAGGAGTTGGAGT+TGG | + | chr8.2:402197-402216 | None:intergenic | 45.0% |
| ! | CTGATTTGTGTAGTAGAGGG+AGG | + | chr8.2:402474-402493 | None:intergenic | 45.0% |
| ! | GAAGTGATTCTAGGAGGAGT+TGG | + | chr8.2:402203-402222 | None:intergenic | 45.0% |
| ! | GATCAAGGCATCACAAAAGG+AGG | - | chr8.2:403491-403510 | MS.gene95062:CDS | 45.0% |
| !! | CCAGCTGATTTGTGTAGTAG+AGG | + | chr8.2:402478-402497 | None:intergenic | 45.0% |
| !! | GTCCCTGTTTTGCTTGTTGA+TGG | - | chr8.2:402530-402549 | MS.gene95062:intron | 45.0% |
| !! | ATAAATTAAATAAATAAGTA+AGG | + | chr8.2:402273-402292 | None:intergenic | 5.0% |
| AAGTGACGACCCAGACTTTG+GGG | + | chr8.2:402922-402941 | None:intergenic | 50.0% | |
| ACAAATCAGCTGGGTCTTGG+GGG | - | chr8.2:402485-402504 | MS.gene95062:intron | 50.0% | |
| AGAAGTGACGACCCAGACTT+TGG | + | chr8.2:402924-402943 | None:intergenic | 50.0% | |
| AGTAGAAGGTCTTGGAGTGC+TGG | + | chr8.2:402375-402394 | None:intergenic | 50.0% | |
| CACAAATCAGCTGGGTCTTG+GGG | - | chr8.2:402484-402503 | MS.gene95062:intron | 50.0% | |
| GAAGTGACGACCCAGACTTT+GGG | + | chr8.2:402923-402942 | None:intergenic | 50.0% | |
| GAGGAAGCGAAGGTTCTGTT+TGG | + | chr8.2:402231-402250 | None:intergenic | 50.0% | |
| GTCTGGATTCCCCAATCACA+AGG | - | chr8.2:402700-402719 | MS.gene95062:intron | 50.0% | |
| GTGTAGTAGAGGGAGGTTGT+TGG | + | chr8.2:402467-402486 | None:intergenic | 50.0% | |
| TGCCTTGCTGCTCCAAACAA+AGG | + | chr8.2:403214-403233 | None:intergenic | 50.0% | |
| ! | TGTTTGGAGCAGCAAGGCAT+TGG | - | chr8.2:403215-403234 | MS.gene95062:CDS | 50.0% |
| !! | GTTTTCAGGGGGCCTTTGTT+TGG | - | chr8.2:403199-403218 | MS.gene95062:CDS | 50.0% |
| AGGATGGTTGCCCCAAAGTC+TGG | - | chr8.2:402909-402928 | MS.gene95062:intron | 55.0% | |
| GGAGGAGTTGGAGTTGGAGT+TGG | + | chr8.2:402191-402210 | None:intergenic | 55.0% | |
| GGATGGTTGCCCCAAAGTCT+GGG | - | chr8.2:402910-402929 | MS.gene95062:intron | 55.0% | |
| GGCCGAGAAAGAGGATCTTG+CGG | - | chr8.2:402415-402434 | MS.gene95062:intron | 55.0% | |
| ! | GGCCTTTGTTTGGAGCAGCA+AGG | - | chr8.2:403209-403228 | MS.gene95062:CDS | 55.0% |
| !! | CAGCAAGGCATTGGTAACCG+AGG | - | chr8.2:403224-403243 | MS.gene95062:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 402150 | 403827 | 402150 | ID=MS.gene95062 |
| chr8.2 | mRNA | 402150 | 403827 | 402150 | ID=MS.gene95062.t1;Parent=MS.gene95062 |
| chr8.2 | exon | 403715 | 403827 | 403715 | ID=MS.gene95062.t1.exon1;Parent=MS.gene95062.t1 |
| chr8.2 | CDS | 403715 | 403827 | 403715 | ID=cds.MS.gene95062.t1;Parent=MS.gene95062.t1 |
| chr8.2 | exon | 403187 | 403580 | 403187 | ID=MS.gene95062.t1.exon2;Parent=MS.gene95062.t1 |
| chr8.2 | CDS | 403187 | 403580 | 403187 | ID=cds.MS.gene95062.t1;Parent=MS.gene95062.t1 |
| chr8.2 | exon | 403001 | 403084 | 403001 | ID=MS.gene95062.t1.exon3;Parent=MS.gene95062.t1 |
| chr8.2 | CDS | 403001 | 403084 | 403001 | ID=cds.MS.gene95062.t1;Parent=MS.gene95062.t1 |
| chr8.2 | exon | 402732 | 402770 | 402732 | ID=MS.gene95062.t1.exon4;Parent=MS.gene95062.t1 |
| chr8.2 | CDS | 402732 | 402770 | 402732 | ID=cds.MS.gene95062.t1;Parent=MS.gene95062.t1 |
| chr8.2 | exon | 402439 | 402485 | 402439 | ID=MS.gene95062.t1.exon5;Parent=MS.gene95062.t1 |
| chr8.2 | CDS | 402439 | 402485 | 402439 | ID=cds.MS.gene95062.t1;Parent=MS.gene95062.t1 |
| chr8.2 | exon | 402150 | 402165 | 402150 | ID=MS.gene95062.t1.exon6;Parent=MS.gene95062.t1 |
| chr8.2 | CDS | 402150 | 402165 | 402150 | ID=cds.MS.gene95062.t1;Parent=MS.gene95062.t1 |
| Gene Sequence |
| Protein sequence |
