AlfalfaGEDB | MS.gene95864

M. sativa cultivar XinJiangDaYe / MS.gene95864

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95864.t1	XP_003631021.1	96.8	402	5	1	67	468	80	473	1.70E-219	771.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95864.t1	Q9LXU9	39.4	350	199	6	104	450	219	558	9.0e-65	249.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95864.t1	G7LCD0	96.8	402	5	1	67	468	80	473	1.2e-219	771.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene95864	0.846277	2.40E-59	-1.69E-46
MS.gene049151	MS.gene95864	0.82695	2.05E-54	-1.69E-46
MS.gene049153	MS.gene95864	0.842548	2.42E-58	-1.69E-46
MS.gene049260	MS.gene95864	0.859319	4.49E-63	-1.69E-46
MS.gene049284	MS.gene95864	0.808581	2.89E-50	-1.69E-46
MS.gene049297	MS.gene95864	0.813987	1.94E-51	-1.69E-46
MS.gene049346	MS.gene95864	0.842159	3.07E-58	-1.69E-46
MS.gene049351	MS.gene95864	0.874588	6.01E-68	-1.69E-46
MS.gene049491	MS.gene95864	0.841793	3.83E-58	-1.69E-46
MS.gene049599	MS.gene95864	-0.821731	3.45E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95864.t1	MTR_8g106210	95.494	466	5	3	3	468	24	473	0.0	911
MS.gene95864.t1	MTR_4g066010	34.198	424	238	9	57	450	172	584	8.74e-74	243
MS.gene95864.t1	MTR_2g098420	34.925	398	230	6	70	443	188	580	5.23e-73	242

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95864.t1	AT1G12330	55.580	457	147	11	23	449	42	472	6.15e-172	493
MS.gene95864.t1	AT5G12900	41.139	316	179	4	138	450	247	558	1.32e-80	260

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Find 63 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGTTGCTATGTTGGGT+TGG	0.545805	4.3:+942779	MS.gene95864:CDS
AAGCTCTTCAAGAAGCTTCA+AGG	0.420955	4.3:+942179	MS.gene95864:CDS
AATACTGCTACTAATGTTGT+TGG	0.374603	4.3:+942298	MS.gene95864:CDS
ACAAAGAAAGCTTGCAAAAG+TGG	0.443973	4.3:-942820	None:intergenic
ACAATGCAACTTAGACACAC+AGG	0.633999	4.3:+942448	MS.gene95864:CDS
ACATGATTCATGGGTTGACT+TGG	0.437332	4.3:+942683	MS.gene95864:CDS
ACCAAACATGGTTAGGATTA+TGG	0.210083	4.3:+942984	MS.gene95864:CDS
ACCATAATCCTAACCATGTT+TGG	0.426702	4.3:-942985	None:intergenic
ACTTGATGGGTTTAAGGTGA+TGG	0.440131	4.3:-943111	None:intergenic
AGCAACAACAAACAAGACAA+AGG	0.670945	4.3:+943081	MS.gene95864:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATACTGCTACTAATGTTGT+TGG	+	chr4.3:942298-942317	MS.gene95864:CDS	30.0%
AGTGAAATTGTTGCTATGTT+GGG	+	chr4.3:942775-942794	MS.gene95864:CDS	30.0%
ATGGATTTGAAAATCCCATT+TGG	-	chr4.3:942034-942053	None:intergenic	30.0%
CAAACAACAATGAAGAACAA+TGG	+	chr4.3:942098-942117	MS.gene95864:CDS	30.0%
CAACTTTGATTCAGTTTACA+TGG	+	chr4.3:942927-942946	MS.gene95864:CDS	30.0%
CAATGAAGAACAATGGAAAA+TGG	+	chr4.3:942105-942124	MS.gene95864:CDS	30.0%
CTTCATTCAACATGATTCAT+GGG	+	chr4.3:942674-942693	MS.gene95864:CDS	30.0%
TAATAGGATATTGAACCCTA+TGG	+	chr4.3:942630-942649	MS.gene95864:CDS	30.0%
TCAGTTTACATGGAAGATAT+GGG	+	chr4.3:942937-942956	MS.gene95864:CDS	30.0%
TGATGATTGATATTGTGCTT+TGG	-	chr4.3:941812-941831	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	941716	943122	941716	ID=MS.gene95864
chr4.3	mRNA	941716	943122	941716	ID=MS.gene95864.t1;Parent=MS.gene95864
chr4.3	exon	941716	943122	941716	ID=MS.gene95864.t1.exon1;Parent=MS.gene95864.t1
chr4.3	CDS	941716	943122	941716	ID=cds.MS.gene95864.t1;Parent=MS.gene95864.t1

Gene Sequence

>MS.gene95864

ATGCAGATTCAAGAGGAACATGAATTTGATGAATACACCAACAGTGAAAACAGAAGCCAAAGTAGAAGAACAACACCAACAAGTGCTTCAACTCCAAAGCACAATATCAATCATCATCATCCACCAACACCAATCAATATCAACAAAAACACAAAACCAAATCACAAGAAAAAACGTTCTGAAACTGAACTAGAAGATGGTTCTGTTTCATGCAACAAATGCAGACCACATTCTCGTGACAAAATCTTCATCCTTCCCTTTGATCATTCCAACAACAACAGCAGTAACAGCAAGTATTCATCTTTGTTGCAAAGTCCAAATGGGATTTTCAAATCCATTGTTTCAAAGCTAACAAGAAAAAGTCCAATGTCAGCATCAACAACAAACAACAATGAAGAACAATGGAAAATGGCAGTAGCAGAACTTTCTCACAAACTTGTTCATGCCACAAGAAAAAGAGATGAAGCTCTTCAAGAAGCTTCAAGGCTCATGAACTCAATGTCAGAGTTAGAGAAAAAGTTGAACAAGCTTGAAATTTATTGTCACACTTTGAAATCTGGTCTTGAAGAATGTAACAATATTAATACTGCTACTAATGTTGTTGGTTCTTCTAATGTTGTTGCTCAGAAGAATTTTCATCATCATGTTCAAGACAATGACAACGTTGTACAACATTTCTTGGTGGCTGTTTCTGAAGCAAGATCTTCAGTGAGACTTCTAAGTCGTTCTTTAACAATGCAACTTAGACACACAGGAAGCAAAGTGTATGAAAAAGTTTCTTTACTTTTACAACCTTATGATATAAAAATCTCTTTTTCAAAGAATCCAAGAAGTTTGCTTTTTTACTTGGAAGCACTTTTGAACAAGACATTTTTTGAGGATTTTGAGTCAATTGGGTTTCAAAAGAATGCTTGTAATAGGATATTGAACCCTATGGAAAGGTGTGAATCAAGTTTTGCTTCATTCAACATGATTCATGGGTTGACTTGGGATGAAGTTTTGAGCAAAGGGACAAGACATTTTAGTGAAGATTTTAGTAGATTTTGTGATAGAAAAATGAGTGAAATTGTTGCTATGTTGGGTTGGAATAGGGCTTGGTCTGAACCACTTTTGCAAGCTTTCTTTGTTGCTTCAAAGAGTGTTTGGATGGTTCATTTGTTGGCTAATTCAGTTCATCCAAGTTTGCCAATTTTTAGAGTTGATAAAGGAGTCAACTTTGATTCAGTTTACATGGAAGATATGGGTGGGGACAAGTCTTCAAGGTTGGTACCAAACATGGTTAGGATTATGGTTGCTCCTGGTTTTTATGTCTATGGTAGTGCTGTTAAATGTAAGGTTCTTTGCAGGTACTTGACCAATAACCTCAGCAACAACAAACAAGACAAAGGTTTAAACCCATCACCTTAA

Protein sequence

>MS.gene95864.t1

MQIQEEHEFDEYTNSENRSQSRRTTPTSASTPKHNINHHHPPTPININKNTKPNHKKKRSETELEDGSVSCNKCRPHSRDKIFILPFDHSNNNSSNSKYSSLLQSPNGIFKSIVSKLTRKSPMSASTTNNNEEQWKMAVAELSHKLVHATRKRDEALQEASRLMNSMSELEKKLNKLEIYCHTLKSGLEECNNINTATNVVGSSNVVAQKNFHHHVQDNDNVVQHFLVAVSEARSSVRLLSRSLTMQLRHTGSKVYEKVSLLLQPYDIKISFSKNPRSLLFYLEALLNKTFFEDFESIGFQKNACNRILNPMERCESSFASFNMIHGLTWDEVLSKGTRHFSEDFSRFCDRKMSEIVAMLGWNRAWSEPLLQAFFVASKSVWMVHLLANSVHPSLPIFRVDKGVNFDSVYMEDMGGDKSSRLVPNMVRIMVAPGFYVYGSAVKCKVLCRYLTNNLSNNKQDKGLNPSP