Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85898.t1 | XP_003613952.1 | 97.8 | 231 | 5 | 0 | 1 | 231 | 1 | 231 | 1.90E-120 | 441.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85898.t1 | Q9C4Z7 | 60.3 | 232 | 78 | 6 | 4 | 228 | 5 | 229 | 3.8e-64 | 246.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85898.t1 | G7JWN8 | 97.8 | 231 | 5 | 0 | 1 | 231 | 1 | 231 | 1.4e-120 | 441.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene85898 | 0.830963 | 2.18E-55 | -1.69E-46 |
| MS.gene049151 | MS.gene85898 | 0.82506 | 5.76E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene85898 | 0.818532 | 1.87E-52 | -1.69E-46 |
| MS.gene049233 | MS.gene85898 | 0.800798 | 1.22E-48 | -1.69E-46 |
| MS.gene049260 | MS.gene85898 | 0.847171 | 1.37E-59 | -1.69E-46 |
| MS.gene049297 | MS.gene85898 | 0.817789 | 2.75E-52 | -1.69E-46 |
| MS.gene049346 | MS.gene85898 | 0.814656 | 1.38E-51 | -1.69E-46 |
| MS.gene049351 | MS.gene85898 | 0.801251 | 9.84E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene85898 | 0.820441 | 6.85E-53 | -1.69E-46 |
| MS.gene049599 | MS.gene85898 | -0.821481 | 3.95E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene85898 | 0.902065 | 1.42E-78 | -1.69E-46 |
| MS.gene049915 | MS.gene85898 | 0.833005 | 6.84E-56 | -1.69E-46 |
| MS.gene050099 | MS.gene85898 | 0.81822 | 2.20E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene85898 | 0.837473 | 5.09E-57 | -1.69E-46 |
| MS.gene050226 | MS.gene85898 | 0.821509 | 3.89E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene85898 | 0.823005 | 1.75E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene85898 | 0.80742 | 5.10E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene85898 | 0.867997 | 9.06E-66 | -1.69E-46 |
| MS.gene050330 | MS.gene85898 | -0.822262 | 2.60E-53 | -1.69E-46 |
| MS.gene050516 | MS.gene85898 | 0.80723 | 5.59E-50 | -1.69E-46 |
| MS.gene050558 | MS.gene85898 | 0.842467 | 2.54E-58 | -1.69E-46 |
| MS.gene050623 | MS.gene85898 | -0.831527 | 1.59E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene85898 | 0.832316 | 1.01E-55 | -1.69E-46 |
| MS.gene050721 | MS.gene85898 | 0.801613 | 8.29E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene85898 | 0.816537 | 5.25E-52 | -1.69E-46 |
| MS.gene050763 | MS.gene85898 | 0.818636 | 1.77E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene85898 | 0.800313 | 1.53E-48 | -1.69E-46 |
| MS.gene05119 | MS.gene85898 | -0.820706 | 5.95E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene85898 | 0.827801 | 1.28E-54 | -1.69E-46 |
| MS.gene051663 | MS.gene85898 | 0.860924 | 1.47E-63 | -1.69E-46 |
| MS.gene051860 | MS.gene85898 | 0.866311 | 3.13E-65 | -1.69E-46 |
| MS.gene051983 | MS.gene85898 | 0.836486 | 9.10E-57 | -1.69E-46 |
| MS.gene052025 | MS.gene85898 | 0.811693 | 6.16E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene85898 | 0.824297 | 8.71E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene85898 | 0.832737 | 7.97E-56 | -1.69E-46 |
| MS.gene052115 | MS.gene85898 | 0.820813 | 5.62E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene85898 | 0.828384 | 9.26E-55 | -1.69E-46 |
| MS.gene052178 | MS.gene85898 | 0.838736 | 2.41E-57 | -1.69E-46 |
| MS.gene052188 | MS.gene85898 | 0.847169 | 1.37E-59 | -1.69E-46 |
| MS.gene052207 | MS.gene85898 | 0.848761 | 4.99E-60 | -1.69E-46 |
| MS.gene052253 | MS.gene85898 | 0.80305 | 4.19E-49 | -1.69E-46 |
| MS.gene052255 | MS.gene85898 | 0.802705 | 4.94E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene85898 | 0.833382 | 5.51E-56 | -1.69E-46 |
| MS.gene052376 | MS.gene85898 | 0.801763 | 7.72E-49 | -1.69E-46 |
| MS.gene052600 | MS.gene85898 | 0.805643 | 1.21E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene85898 | 0.822216 | 2.67E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene85898 | 0.807375 | 5.21E-50 | -1.69E-46 |
| MS.gene053559 | MS.gene85898 | 0.809863 | 1.53E-50 | -1.69E-46 |
| MS.gene053630 | MS.gene85898 | 0.801666 | 8.08E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene85898 | 0.90431 | 1.40E-79 | -1.69E-46 |
| MS.gene053907 | MS.gene85898 | 0.801565 | 8.48E-49 | -1.69E-46 |
| MS.gene053928 | MS.gene85898 | 0.821148 | 4.71E-53 | -1.69E-46 |
| MS.gene054011 | MS.gene85898 | 0.807419 | 5.10E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene85898 | 0.802721 | 4.90E-49 | -1.69E-46 |
| MS.gene054184 | MS.gene85898 | 0.820711 | 5.94E-53 | -1.69E-46 |
| MS.gene054185 | MS.gene85898 | 0.81944 | 1.16E-52 | -1.69E-46 |
| MS.gene054379 | MS.gene85898 | 0.812716 | 3.69E-51 | -1.69E-46 |
| MS.gene054473 | MS.gene85898 | 0.862939 | 3.55E-64 | -1.69E-46 |
| MS.gene054542 | MS.gene85898 | 0.857921 | 1.17E-62 | -1.69E-46 |
| MS.gene054667 | MS.gene85898 | 0.809752 | 1.62E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene85898 | 0.869979 | 2.06E-66 | -1.69E-46 |
| MS.gene054942 | MS.gene85898 | 0.823068 | 1.69E-53 | -1.69E-46 |
| MS.gene054983 | MS.gene85898 | 0.81884 | 1.59E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene85898 | 0.80012 | 1.67E-48 | -1.69E-46 |
| MS.gene055133 | MS.gene85898 | 0.81485 | 1.25E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene85898 | 0.82184 | 3.26E-53 | -1.69E-46 |
| MS.gene055390 | MS.gene85898 | 0.820661 | 6.10E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene85898 | 0.869118 | 3.93E-66 | -1.69E-46 |
| MS.gene055428 | MS.gene85898 | 0.846222 | 2.49E-59 | -1.69E-46 |
| MS.gene055604 | MS.gene85898 | 0.856228 | 3.71E-62 | -1.69E-46 |
| MS.gene055712 | MS.gene85898 | 0.839294 | 1.73E-57 | -1.69E-46 |
| MS.gene055859 | MS.gene85898 | 0.836823 | 7.47E-57 | -1.69E-46 |
| MS.gene056069 | MS.gene85898 | -0.830693 | 2.54E-55 | -1.69E-46 |
| MS.gene056314 | MS.gene85898 | 0.807287 | 5.44E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene85898 | 0.803629 | 3.18E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene85898 | 0.800337 | 1.51E-48 | -1.69E-46 |
| MS.gene056612 | MS.gene85898 | 0.840107 | 1.06E-57 | -1.69E-46 |
| MS.gene056875 | MS.gene85898 | 0.832708 | 8.10E-56 | -1.69E-46 |
| MS.gene056902 | MS.gene85898 | 0.807293 | 5.43E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene85898 | 0.823884 | 1.09E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene85898 | 0.802169 | 6.37E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene85898 | 0.844037 | 9.69E-59 | -1.69E-46 |
| MS.gene057245 | MS.gene85898 | 0.810998 | 8.72E-51 | -1.69E-46 |
| MS.gene057260 | MS.gene85898 | 0.820002 | 8.63E-53 | -1.69E-46 |
| MS.gene057439 | MS.gene85898 | 0.856304 | 3.52E-62 | -1.69E-46 |
| MS.gene057448 | MS.gene85898 | 0.831951 | 1.25E-55 | -1.69E-46 |
| MS.gene057449 | MS.gene85898 | 0.810748 | 9.88E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene85898 | 0.83465 | 2.65E-56 | -1.69E-46 |
| MS.gene057469 | MS.gene85898 | 0.843531 | 1.32E-58 | -1.69E-46 |
| MS.gene057750 | MS.gene85898 | 0.800389 | 1.47E-48 | -1.69E-46 |
| MS.gene057754 | MS.gene85898 | 0.826287 | 2.95E-54 | -1.69E-46 |
| MS.gene057796 | MS.gene85898 | 0.804503 | 2.09E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene85898 | 0.866857 | 2.10E-65 | -1.69E-46 |
| MS.gene058082 | MS.gene85898 | 0.83075 | 2.46E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene85898 | 0.887554 | 1.29E-72 | -1.69E-46 |
| MS.gene058139 | MS.gene85898 | 0.802542 | 5.34E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene85898 | 0.846209 | 2.51E-59 | -1.69E-46 |
| MS.gene058182 | MS.gene85898 | 0.835311 | 1.81E-56 | -1.69E-46 |
| MS.gene058236 | MS.gene85898 | 0.810679 | 1.02E-50 | -1.69E-46 |
| MS.gene058399 | MS.gene85898 | 0.804677 | 1.93E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene85898 | 0.846051 | 2.77E-59 | -1.69E-46 |
| MS.gene058749 | MS.gene85898 | 0.85665 | 2.79E-62 | -1.69E-46 |
| MS.gene058833 | MS.gene85898 | 0.830478 | 2.87E-55 | -1.69E-46 |
| MS.gene058845 | MS.gene85898 | 0.855539 | 5.90E-62 | -1.69E-46 |
| MS.gene05907 | MS.gene85898 | 0.852127 | 5.66E-61 | -1.69E-46 |
| MS.gene059285 | MS.gene85898 | 0.840103 | 1.06E-57 | -1.69E-46 |
| MS.gene059294 | MS.gene85898 | 0.801031 | 1.09E-48 | -1.69E-46 |
| MS.gene059421 | MS.gene85898 | 0.805245 | 1.47E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene85898 | 0.874259 | 7.77E-68 | -1.69E-46 |
| MS.gene059597 | MS.gene85898 | 0.815772 | 7.79E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene85898 | 0.802921 | 4.46E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene85898 | 0.810192 | 1.30E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene85898 | 0.803776 | 2.97E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene85898 | 0.879217 | 1.49E-69 | -1.69E-46 |
| MS.gene059894 | MS.gene85898 | 0.836378 | 9.69E-57 | -1.69E-46 |
| MS.gene059899 | MS.gene85898 | 0.858724 | 6.77E-63 | -1.69E-46 |
| MS.gene060084 | MS.gene85898 | 0.814152 | 1.78E-51 | -1.69E-46 |
| MS.gene060165 | MS.gene85898 | 0.810163 | 1.32E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene85898 | 0.854682 | 1.05E-61 | -1.69E-46 |
| MS.gene060476 | MS.gene85898 | 0.825473 | 4.60E-54 | -1.69E-46 |
| MS.gene060495 | MS.gene85898 | 0.828099 | 1.08E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene85898 | 0.864537 | 1.13E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85898.t1 | MTR_5g043020 | 97.835 | 231 | 5 | 0 | 1 | 231 | 1 | 231 | 7.32e-169 | 464 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85898.t1 | AT1G69390 | 60.345 | 232 | 78 | 6 | 4 | 228 | 5 | 229 | 4.12e-88 | 260 |
Find 42 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCACCACTTGATATTC+TGG | 0.244756 | 5.3:+30672897 | None:intergenic |
| CTATCAACAATGGCGATTTC+CGG | 0.270969 | 5.3:-30675019 | None:intergenic |
| GGAGAAAGTTCTCAGCTTCT+TGG | 0.278127 | 5.3:+30673222 | None:intergenic |
| AAGGACACTGGAGATATTTC+AGG | 0.278153 | 5.3:-30672846 | MS.gene85898:CDS |
| TTTCTTTGAGCGCTTAAATT+TGG | 0.280736 | 5.3:-30673180 | MS.gene85898:CDS |
| AATGGAGGGTCCTGCATATC+TGG | 0.296453 | 5.3:-30673356 | MS.gene85898:CDS |
| TATCAAGTGGTGGATGAAAC+TGG | 0.298342 | 5.3:-30672891 | MS.gene85898:CDS |
| AATAACAAATATTGAGTATA+AGG | 0.315113 | 5.3:-30672865 | MS.gene85898:CDS |
| GTTGTCATGGTGGAACGTTT+TGG | 0.358148 | 5.3:+30673326 | None:intergenic |
| GTCTCTGCAGATACAGATAT+TGG | 0.363379 | 5.3:-30672960 | MS.gene85898:CDS |
| GGGCACTGTAACAGAGTAAA+TGG | 0.390263 | 5.3:+30672935 | None:intergenic |
| CAAAATCAAGACATTTCATC+CGG | 0.406142 | 5.3:+30672792 | None:intergenic |
| AATCATCTTCAGACGTTGCT+TGG | 0.438839 | 5.3:+30673100 | None:intergenic |
| AAAGAGGTGGTTGGAAGGAG+AGG | 0.466613 | 5.3:+30674953 | None:intergenic |
| TTCTGGTTTAACCCGCCGTA+CGG | 0.471214 | 5.3:+30672914 | None:intergenic |
| GAAGAAAAGAGGTGGTTGGA+AGG | 0.472988 | 5.3:+30674948 | None:intergenic |
| GGAGGAAGAAAAGAGGTGGT+TGG | 0.485305 | 5.3:+30674944 | None:intergenic |
| AGAGGATGTGAGCGATGGAG+TGG | 0.486682 | 5.3:+30674971 | None:intergenic |
| TTCATTGTTTCTTAAATGGA+GGG | 0.495949 | 5.3:-30673370 | MS.gene85898:CDS |
| TGGGGTGAATCCAGATATGC+AGG | 0.499751 | 5.3:+30673346 | None:intergenic |
| CTAAGAAAAGCTCCGTTGCT+AGG | 0.515407 | 5.3:-30673127 | MS.gene85898:CDS |
| TTTCATTGTTTCTTAAATGG+AGG | 0.517610 | 5.3:-30673371 | MS.gene85898:CDS |
| TTGAGCGCTTAAATTTGGCT+TGG | 0.521054 | 5.3:-30673175 | MS.gene85898:CDS |
| TCTGGTTTAACCCGCCGTAC+GGG | 0.523775 | 5.3:+30672915 | None:intergenic |
| GAAGGAGAGGATGTGAGCGA+TGG | 0.527839 | 5.3:+30674966 | None:intergenic |
| TGCAGTGACTCTAATGTCGC+CGG | 0.551915 | 5.3:+30675000 | None:intergenic |
| TGTTACAGTGCCCGTACGGC+GGG | 0.561780 | 5.3:-30672925 | MS.gene85898:CDS |
| ATTGCTTCGTACAGTTGTCA+TGG | 0.565206 | 5.3:+30673313 | None:intergenic |
| ATCAAGTGGTGGATGAAACT+GGG | 0.583073 | 5.3:-30672890 | MS.gene85898:CDS |
| AAAAGGAACGATACCTTTGG+AGG | 0.585564 | 5.3:+30674926 | None:intergenic |
| AATATTGAGTATAAGGACAC+TGG | 0.585790 | 5.3:-30672858 | MS.gene85898:CDS |
| AACTCATATTAACAGCATCA+AGG | 0.588920 | 5.3:+30673201 | None:intergenic |
| ACTCTGTTACAGTGCCCGTA+CGG | 0.591809 | 5.3:-30672929 | MS.gene85898:CDS |
| TACCTTTGGAGGAAGAAAAG+AGG | 0.614181 | 5.3:+30674937 | None:intergenic |
| CTGTTACAGTGCCCGTACGG+CGG | 0.640114 | 5.3:-30672926 | MS.gene85898:CDS |
| TTGCTTGGCAATCCTAGCAA+CGG | 0.640673 | 5.3:+30673115 | None:intergenic |
| TAAACCAGAATATCAAGTGG+TGG | 0.645335 | 5.3:-30672901 | MS.gene85898:CDS |
| GCTTCGTACAGTTGTCATGG+TGG | 0.658571 | 5.3:+30673316 | None:intergenic |
| CTTTGGAGGAAGAAAAGAGG+TGG | 0.662965 | 5.3:+30674940 | None:intergenic |
| GGTTAAACCAGAATATCAAG+TGG | 0.711520 | 5.3:-30672904 | MS.gene85898:CDS |
| ACTGTACGAAGCAATATGCG+TGG | 0.726540 | 5.3:-30673305 | MS.gene85898:CDS |
| TCGATGTGAAGTAAGTGATG+AGG | 0.741244 | 5.3:-30673066 | MS.gene85898:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAAATATTGAGTATA+AGG | - | chr5.3:30674942-30674961 | MS.gene85898:CDS | 15.0% |
| !! | ATAAATATAAGCTTAAAACA+TGG | + | chr5.3:30673390-30673409 | None:intergenic | 15.0% |
| !! | ATTTATGTATGTATTTAGTT+TGG | - | chr5.3:30673123-30673142 | MS.gene85898:CDS | 15.0% |
| !!! | AAACATATCATATTTTATGA+GGG | - | chr5.3:30673992-30674011 | MS.gene85898:intron | 15.0% |
| !!! | ATGTTTTAAGCTTATATTTA+TGG | - | chr5.3:30673389-30673408 | MS.gene85898:intron | 15.0% |
| !!! | TGTAGTTTTTGTTAAAATTT+TGG | - | chr5.3:30673462-30673481 | MS.gene85898:intron | 15.0% |
| !!! | TTTAAGTTAATTATATGTGT+CGG | - | chr5.3:30673238-30673257 | MS.gene85898:CDS | 15.0% |
| !!! | TTTTCTTTTTTCTCTAATTA+GGG | - | chr5.3:30672900-30672919 | MS.gene85898:CDS | 15.0% |
| !!! | TTTTGTTACTGTTTTAATAA+TGG | - | chr5.3:30673044-30673063 | MS.gene85898:CDS | 15.0% |
| !! | AAAGTAGAAGTTATTGAATT+GGG | + | chr5.3:30673869-30673888 | None:intergenic | 20.0% |
| !! | CTAATTAGAGAAAAAAGAAA+AGG | + | chr5.3:30672901-30672920 | None:intergenic | 20.0% |
| !! | GTTTGAGTAATAAAAATGAA+GGG | - | chr5.3:30673601-30673620 | MS.gene85898:intron | 20.0% |
| !! | TGTTTGAGTAATAAAAATGA+AGG | - | chr5.3:30673600-30673619 | MS.gene85898:intron | 20.0% |
| !! | TTTGAGTAATAAAAATGAAG+GGG | - | chr5.3:30673602-30673621 | MS.gene85898:intron | 20.0% |
| !!! | AACATATCATATTTTATGAG+GGG | - | chr5.3:30673993-30674012 | MS.gene85898:intron | 20.0% |
| !!! | AACATGTGATATAATTTTCA+AGG | + | chr5.3:30673584-30673603 | None:intergenic | 20.0% |
| !!! | AACATTTTGTAAATCTTGTA+AGG | + | chr5.3:30674372-30674391 | None:intergenic | 20.0% |
| !!! | ATATTTAATTTAGATGCTTG+TGG | - | chr5.3:30674294-30674313 | MS.gene85898:intron | 20.0% |
| !!! | CAAACATATCATATTTTATG+AGG | - | chr5.3:30673991-30674010 | MS.gene85898:intron | 20.0% |
| !!! | CTTTGTTATAGATGTATTTT+CGG | - | chr5.3:30673547-30673566 | MS.gene85898:intron | 20.0% |
| !!! | CTTTTCTTTTTTCTCTAATT+AGG | - | chr5.3:30672899-30672918 | MS.gene85898:CDS | 20.0% |
| !!! | GATTTTCATTGTTTCTTAAA+TGG | - | chr5.3:30674433-30674452 | MS.gene85898:intron | 20.0% |
| !!! | TAGATTTGATTTTTATGTTC+CGG | - | chr5.3:30674996-30675015 | MS.gene85898:CDS | 20.0% |
| !!! | TATTTTCTCTTGCAAATTAA+CGG | - | chr5.3:30672952-30672971 | MS.gene85898:CDS | 20.0% |
| !!! | TTTTAACAAAAACTACACTT+TGG | + | chr5.3:30673459-30673478 | None:intergenic | 20.0% |
| !!! | TTTTGTTAAAATTTTGGTAG+CGG | - | chr5.3:30673468-30673487 | MS.gene85898:intron | 20.0% |
| ! | AAATACACCTATACATGATA+AGG | - | chr5.3:30673906-30673925 | MS.gene85898:intron | 25.0% |
| ! | AACACATATTTCCAATCAAA+TGG | + | chr5.3:30674097-30674116 | None:intergenic | 25.0% |
| ! | AATCCAAACTTGTACTAAAA+CGG | - | chr5.3:30673517-30673536 | MS.gene85898:intron | 25.0% |
| ! | CAAAGTAGAAGTTATTGAAT+TGG | + | chr5.3:30673870-30673889 | None:intergenic | 25.0% |
| ! | CAGAACAATTAAGATTAACA+AGG | + | chr5.3:30674402-30674421 | None:intergenic | 25.0% |
| ! | GAGTTTGAAGAAATTATTGT+GGG | - | chr5.3:30673413-30673432 | MS.gene85898:intron | 25.0% |
| ! | GTATTATCCTTATCATGTAT+AGG | + | chr5.3:30673916-30673935 | None:intergenic | 25.0% |
| ! | TCACTATGTCCAATAATAAT+TGG | - | chr5.3:30673705-30673724 | MS.gene85898:intron | 25.0% |
| ! | TGAGTTTGAAGAAATTATTG+TGG | - | chr5.3:30673412-30673431 | MS.gene85898:intron | 25.0% |
| !! | AACTGACTTTGATGAAAAAT+TGG | + | chr5.3:30674563-30674582 | None:intergenic | 25.0% |
| !! | CCTTTTTGATATTCAGTATA+GGG | - | chr5.3:30674227-30674246 | MS.gene85898:intron | 25.0% |
| !! | CTTTTTGATATTCAGTATAG+GGG | - | chr5.3:30674228-30674247 | MS.gene85898:intron | 25.0% |
| !! | GACAAATTTCTTTTGCAAAT+AGG | + | chr5.3:30673731-30673750 | None:intergenic | 25.0% |
| !! | GACTACAGTAATTGAAATTT+TGG | - | chr5.3:30673345-30673364 | MS.gene85898:CDS | 25.0% |
| !! | TATTTTCTCCAATTTCTCTA+AGG | + | chr5.3:30674142-30674161 | None:intergenic | 25.0% |
| !! | TTCATTGTTTCTTAAATGGA+GGG | - | chr5.3:30674437-30674456 | MS.gene85898:intron | 25.0% |
| !! | TTTCATTGTTTCTTAAATGG+AGG | - | chr5.3:30674436-30674455 | MS.gene85898:intron | 25.0% |
| !!! | AATTTCAAGTTCAGAAATGT+TGG | - | chr5.3:30673099-30673118 | MS.gene85898:CDS | 25.0% |
| !!! | CTTTGAAACAAACTTATTCT+GGG | + | chr5.3:30673753-30673772 | None:intergenic | 25.0% |
| !!! | TTGAAAGCGTCAATTATTTT+AGG | + | chr5.3:30673781-30673800 | None:intergenic | 25.0% |
| AACTCATATTAACAGCATCA+AGG | + | chr5.3:30674609-30674628 | None:intergenic | 30.0% | |
| AATATTGAGTATAAGGACAC+TGG | - | chr5.3:30674949-30674968 | MS.gene85898:CDS | 30.0% | |
| ACATAGTGAGTAATGAATTG+TGG | + | chr5.3:30673694-30673713 | None:intergenic | 30.0% | |
| CCCTATACTGAATATCAAAA+AGG | + | chr5.3:30674230-30674249 | None:intergenic | 30.0% | |
| GCAAATAGGCCAATTATTAT+TGG | + | chr5.3:30673717-30673736 | None:intergenic | 30.0% | |
| GTAATAAAAATGAAGGGGAA+CGG | - | chr5.3:30673607-30673626 | MS.gene85898:intron | 30.0% | |
| TAACTTCTACTTTGCATCAA+CGG | - | chr5.3:30673876-30673895 | MS.gene85898:intron | 30.0% | |
| TAATAAAAATGAAGGGGAAC+GGG | - | chr5.3:30673608-30673627 | MS.gene85898:intron | 30.0% | |
| TCCAATCAAATGGAATAAAG+TGG | + | chr5.3:30674087-30674106 | None:intergenic | 30.0% | |
| TCCACTTTATTCCATTTGAT+TGG | - | chr5.3:30674083-30674102 | MS.gene85898:intron | 30.0% | |
| TCTTAATTGTTCTGTCTAAC+AGG | - | chr5.3:30674408-30674427 | MS.gene85898:intron | 30.0% | |
| TGTTATTGTCTACACTCTAT+AGG | - | chr5.3:30673656-30673675 | MS.gene85898:intron | 30.0% | |
| TTTCTTTGAGCGCTTAAATT+TGG | - | chr5.3:30674627-30674646 | MS.gene85898:intron | 30.0% | |
| ! | ACAAATACTCCTTTTGGATT+AGG | + | chr5.3:30673303-30673322 | None:intergenic | 30.0% |
| ! | ATTGACGCTTTCAATTTTGA+AGG | - | chr5.3:30673787-30673806 | MS.gene85898:intron | 30.0% |
| ! | CCAGAATAAGTTTGTTTCAA+AGG | - | chr5.3:30673751-30673770 | MS.gene85898:intron | 30.0% |
| ! | GCCTTTTTGATATTCAGTAT+AGG | - | chr5.3:30674226-30674245 | MS.gene85898:intron | 30.0% |
| ! | TTAAGCACAAATACTCCTTT+TGG | + | chr5.3:30673309-30673328 | None:intergenic | 30.0% |
| ! | TTTTGTTGATCTGTGTGAAA+TGG | - | chr5.3:30673967-30673986 | MS.gene85898:intron | 30.0% |
| !! | CCTTTGAAACAAACTTATTC+TGG | + | chr5.3:30673754-30673773 | None:intergenic | 30.0% |
| AAGAAAAGGAACGATACCTT+TGG | + | chr5.3:30672887-30672906 | None:intergenic | 35.0% | |
| AATAAAAATGAAGGGGAACG+GGG | - | chr5.3:30673609-30673628 | MS.gene85898:intron | 35.0% | |
| AGAAGTTATTGAATTGGGAG+TGG | + | chr5.3:30673864-30673883 | None:intergenic | 35.0% | |
| ATGAAAAATTGGAACCTCCA+AGG | + | chr5.3:30674552-30674571 | None:intergenic | 35.0% | |
| CACTAATACTTTGGTCTAGA+GGG | + | chr5.3:30674046-30674065 | None:intergenic | 35.0% | |
| GGTTAAACCAGAATATCAAG+TGG | - | chr5.3:30674903-30674922 | MS.gene85898:intron | 35.0% | |
| TAAACCAGAATATCAAGTGG+TGG | - | chr5.3:30674906-30674925 | MS.gene85898:intron | 35.0% | |
| TATGCACTCCACTAATACTT+TGG | + | chr5.3:30674055-30674074 | None:intergenic | 35.0% | |
| TATTATCAATGTCAGCGTTC+TGG | + | chr5.3:30673199-30673218 | None:intergenic | 35.0% | |
| TTAATTTAGATGCTTGTGGC+TGG | - | chr5.3:30674298-30674317 | MS.gene85898:intron | 35.0% | |
| ! | TTTCTCCAATTTCTCTAAGG+CGG | + | chr5.3:30674139-30674158 | None:intergenic | 35.0% |
| ! | TTTTCTTAGACACTGCTGAT+GGG | + | chr5.3:30674669-30674688 | None:intergenic | 35.0% |
| AAAAGGAACGATACCTTTGG+AGG | + | chr5.3:30672884-30672903 | None:intergenic | 40.0% | |
| AAGGACACTGGAGATATTTC+AGG | - | chr5.3:30674961-30674980 | MS.gene85898:CDS | 40.0% | |
| AATCATCTTCAGACGTTGCT+TGG | + | chr5.3:30674710-30674729 | None:intergenic | 40.0% | |
| AGCAACTGATCAGCATAGAA+TGG | + | chr5.3:30674181-30674200 | None:intergenic | 40.0% | |
| ATTGCTTCGTACAGTTGTCA+TGG | + | chr5.3:30674497-30674516 | None:intergenic | 40.0% | |
| CCAAACTTGTACTAAAACGG+CGG | - | chr5.3:30673520-30673539 | MS.gene85898:intron | 40.0% | |
| CCACTAATACTTTGGTCTAG+AGG | + | chr5.3:30674047-30674066 | None:intergenic | 40.0% | |
| GTCTCTGCAGATACAGATAT+TGG | - | chr5.3:30674847-30674866 | MS.gene85898:intron | 40.0% | |
| TCATCCACCACTTGATATTC+TGG | + | chr5.3:30674913-30674932 | None:intergenic | 40.0% | |
| TCGATGTGAAGTAAGTGATG+AGG | - | chr5.3:30674741-30674760 | MS.gene85898:intron | 40.0% | |
| TGCTGATCAGTTGCTAAAAG+AGG | - | chr5.3:30674186-30674205 | MS.gene85898:intron | 40.0% | |
| TTGAGCGCTTAAATTTGGCT+TGG | - | chr5.3:30674632-30674651 | MS.gene85898:intron | 40.0% | |
| ! | CCTCTAGACCAAAGTATTAG+TGG | - | chr5.3:30674044-30674063 | MS.gene85898:intron | 40.0% |
| ! | CTTTTCTTAGACACTGCTGA+TGG | + | chr5.3:30674670-30674689 | None:intergenic | 40.0% |
| ! | TACCTTTGGAGGAAGAAAAG+AGG | + | chr5.3:30672873-30672892 | None:intergenic | 40.0% |
| !! | ATCAAGTGGTGGATGAAACT+GGG | - | chr5.3:30674917-30674936 | MS.gene85898:intron | 40.0% |
| !! | TATCAAGTGGTGGATGAAAC+TGG | - | chr5.3:30674916-30674935 | MS.gene85898:intron | 40.0% |
| !! | TTCTCCAATTTCTCTAAGGC+GGG | + | chr5.3:30674138-30674157 | None:intergenic | 40.0% |
| !! | TTGTCATGGTGGAACGTTTT+GGG | + | chr5.3:30674483-30674502 | None:intergenic | 40.0% |
| !!! | GCAAATTAACGGTGCTGTTT+TGG | - | chr5.3:30672963-30672982 | MS.gene85898:CDS | 40.0% |
| ACTCAATACGTATCCGACAC+CGG | - | chr5.3:30673273-30673292 | MS.gene85898:CDS | 45.0% | |
| ACTGTACGAAGCAATATGCG+TGG | - | chr5.3:30674502-30674521 | MS.gene85898:intron | 45.0% | |
| AGTTCCCGCCTTAGAGAAAT+TGG | - | chr5.3:30674131-30674150 | MS.gene85898:intron | 45.0% | |
| CTAAGAAAAGCTCCGTTGCT+AGG | - | chr5.3:30674680-30674699 | MS.gene85898:intron | 45.0% | |
| GAAGAAAAGAGGTGGTTGGA+AGG | + | chr5.3:30672862-30672881 | None:intergenic | 45.0% | |
| GGAGAAAGTTCTCAGCTTCT+TGG | + | chr5.3:30674588-30674607 | None:intergenic | 45.0% | |
| TGAAGCAACAACTCAGACAC+CGG | - | chr5.3:30673170-30673189 | MS.gene85898:CDS | 45.0% | |
| TTGCTTGGCAATCCTAGCAA+CGG | + | chr5.3:30674695-30674714 | None:intergenic | 45.0% | |
| ! | CACCTCTTTTCTTCCTCCAA+AGG | - | chr5.3:30672868-30672887 | MS.gene85898:CDS | 45.0% |
| ! | CTTTGGAGGAAGAAAAGAGG+TGG | + | chr5.3:30672870-30672889 | None:intergenic | 45.0% |
| ! | GCGTGCTCTATCAGATTTTG+TGG | - | chr5.3:30674792-30674811 | MS.gene85898:intron | 45.0% |
| ! | GGGCACTGTAACAGAGTAAA+TGG | + | chr5.3:30674875-30674894 | None:intergenic | 45.0% |
| !! | CCGCCGTTTTAGTACAAGTT+TGG | + | chr5.3:30673523-30673542 | None:intergenic | 45.0% |
| !! | GTTGTCATGGTGGAACGTTT+TGG | + | chr5.3:30674484-30674503 | None:intergenic | 45.0% |
| !! | TCCTTTTGGATTAGGCTGTC+CGG | + | chr5.3:30673295-30673314 | None:intergenic | 45.0% |
| !! | TGTCATGGTGGAACGTTTTG+GGG | + | chr5.3:30674482-30674501 | None:intergenic | 45.0% |
| !!! | AAGCCTGTTTTTGCAGTCCT+TGG | - | chr5.3:30674532-30674551 | MS.gene85898:intron | 45.0% |
| !! | TTAATATTAATTTATAGAAA+TGG | + | chr5.3:30673832-30673851 | None:intergenic | 5.0% |
| AAAGAGGTGGTTGGAAGGAG+AGG | + | chr5.3:30672857-30672876 | None:intergenic | 50.0% | |
| AATGGAGGGTCCTGCATATC+TGG | - | chr5.3:30674451-30674470 | MS.gene85898:intron | 50.0% | |
| AATGTCAGCGTTCTGGTGTC+CGG | + | chr5.3:30673192-30673211 | None:intergenic | 50.0% | |
| ACCGGACAGCCTAATCCAAA+AGG | - | chr5.3:30673291-30673310 | MS.gene85898:CDS | 50.0% | |
| ACTCTGTTACAGTGCCCGTA+CGG | - | chr5.3:30674878-30674897 | MS.gene85898:intron | 50.0% | |
| CCTCCAAGGACTGCAAAAAC+AGG | + | chr5.3:30674538-30674557 | None:intergenic | 50.0% | |
| GCTTCGTACAGTTGTCATGG+TGG | + | chr5.3:30674494-30674513 | None:intergenic | 50.0% | |
| GGAGGAAGAAAAGAGGTGGT+TGG | + | chr5.3:30672866-30672885 | None:intergenic | 50.0% | |
| TGCAGTGACTCTAATGTCGC+CGG | + | chr5.3:30672810-30672829 | None:intergenic | 50.0% | |
| TGGGGTGAATCCAGATATGC+AGG | + | chr5.3:30674464-30674483 | None:intergenic | 50.0% | |
| !! | TTCTGGTTTAACCCGCCGTA+CGG | + | chr5.3:30674896-30674915 | None:intergenic | 50.0% |
| !!! | CCTGTTTTTGCAGTCCTTGG+AGG | - | chr5.3:30674535-30674554 | MS.gene85898:intron | 50.0% |
| AGAGGATGTGAGCGATGGAG+TGG | + | chr5.3:30672839-30672858 | None:intergenic | 55.0% | |
| GAAGGAGAGGATGTGAGCGA+TGG | + | chr5.3:30672844-30672863 | None:intergenic | 55.0% | |
| ! | TCTGGTTTAACCCGCCGTAC+GGG | + | chr5.3:30674895-30674914 | None:intergenic | 55.0% |
| ! | TGGATTAGGCTGTCCGGTGT+CGG | + | chr5.3:30673289-30673308 | None:intergenic | 55.0% |
| CTGTTACAGTGCCCGTACGG+CGG | - | chr5.3:30674881-30674900 | MS.gene85898:intron | 60.0% | |
| TGTTACAGTGCCCGTACGGC+GGG | - | chr5.3:30674882-30674901 | MS.gene85898:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 30672797 | 30675032 | 30672797 | ID=MS.gene85898 |
| chr5.3 | mRNA | 30672797 | 30675032 | 30672797 | ID=MS.gene85898.t1;Parent=MS.gene85898 |
| chr5.3 | exon | 30674940 | 30675032 | 30674940 | ID=MS.gene85898.t1.exon1;Parent=MS.gene85898.t1 |
| chr5.3 | CDS | 30674940 | 30675032 | 30674940 | ID=cds.MS.gene85898.t1;Parent=MS.gene85898.t1 |
| chr5.3 | exon | 30672797 | 30673399 | 30672797 | ID=MS.gene85898.t1.exon2;Parent=MS.gene85898.t1 |
| chr5.3 | CDS | 30672797 | 30673399 | 30672797 | ID=cds.MS.gene85898.t1;Parent=MS.gene85898.t1 |
| Gene Sequence |
| Protein sequence |
