Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99551.t1 | XP_013445246.1 | 89.7 | 156 | 16 | 0 | 1 | 156 | 1 | 156 | 5.20E-77 | 297 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99551.t1 | Q9SSK5 | 37.3 | 153 | 92 | 4 | 3 | 152 | 7 | 158 | 1.3e-20 | 100.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99551.t1 | I3SJ62 | 89.7 | 156 | 16 | 0 | 1 | 156 | 1 | 156 | 3.8e-77 | 297.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049150 | MS.gene99551 | 0.831956 | 1.24E-55 | -1.69E-46 |
MS.gene049153 | MS.gene99551 | 0.827907 | 1.21E-54 | -1.69E-46 |
MS.gene049260 | MS.gene99551 | 0.840882 | 6.65E-58 | -1.69E-46 |
MS.gene049346 | MS.gene99551 | 0.835713 | 1.43E-56 | -1.69E-46 |
MS.gene049351 | MS.gene99551 | 0.810075 | 1.38E-50 | -1.69E-46 |
MS.gene049356 | MS.gene99551 | 0.812479 | 4.15E-51 | -1.69E-46 |
MS.gene049599 | MS.gene99551 | -0.814186 | 1.75E-51 | -1.69E-46 |
MS.gene049661 | MS.gene99551 | 0.804427 | 2.17E-49 | -1.69E-46 |
MS.gene049758 | MS.gene99551 | 0.866072 | 3.72E-65 | -1.69E-46 |
MS.gene049910 | MS.gene99551 | 0.800344 | 1.51E-48 | -1.69E-46 |
MS.gene050076 | MS.gene99551 | 0.801455 | 8.93E-49 | -1.69E-46 |
MS.gene050128 | MS.gene99551 | 0.807739 | 4.36E-50 | -1.69E-46 |
MS.gene050301 | MS.gene99551 | 0.855129 | 7.76E-62 | -1.69E-46 |
MS.gene050397 | MS.gene99551 | 0.816064 | 6.71E-52 | -1.69E-46 |
MS.gene050432 | MS.gene99551 | 0.833034 | 6.72E-56 | -1.69E-46 |
MS.gene050642 | MS.gene99551 | 0.800147 | 1.65E-48 | -1.69E-46 |
MS.gene050670 | MS.gene99551 | 0.802042 | 6.77E-49 | -1.69E-46 |
MS.gene050787 | MS.gene99551 | 0.804947 | 1.69E-49 | -1.69E-46 |
MS.gene05101 | MS.gene99551 | 0.806434 | 8.24E-50 | -1.69E-46 |
MS.gene05119 | MS.gene99551 | -0.830378 | 3.04E-55 | -1.69E-46 |
MS.gene051360 | MS.gene99551 | 0.82567 | 4.13E-54 | -1.69E-46 |
MS.gene051860 | MS.gene99551 | 0.85263 | 4.07E-61 | -1.69E-46 |
MS.gene052011 | MS.gene99551 | -0.807552 | 4.78E-50 | -1.69E-46 |
MS.gene052025 | MS.gene99551 | 0.833768 | 4.41E-56 | -1.69E-46 |
MS.gene052077 | MS.gene99551 | 0.825042 | 5.82E-54 | -1.69E-46 |
MS.gene052078 | MS.gene99551 | 0.847781 | 9.31E-60 | -1.69E-46 |
MS.gene052178 | MS.gene99551 | 0.807962 | 3.91E-50 | -1.69E-46 |
MS.gene052188 | MS.gene99551 | 0.861902 | 7.40E-64 | -1.69E-46 |
MS.gene052253 | MS.gene99551 | 0.8643 | 1.34E-64 | -1.69E-46 |
MS.gene052255 | MS.gene99551 | 0.818405 | 1.99E-52 | -1.69E-46 |
MS.gene052310 | MS.gene99551 | 0.804728 | 1.88E-49 | -1.69E-46 |
MS.gene052340 | MS.gene99551 | 0.879939 | 8.27E-70 | -1.69E-46 |
MS.gene052485 | MS.gene99551 | 0.832046 | 1.18E-55 | -1.69E-46 |
MS.gene053209 | MS.gene99551 | 0.877551 | 5.74E-69 | -1.69E-46 |
MS.gene053557 | MS.gene99551 | 0.805466 | 1.32E-49 | -1.69E-46 |
MS.gene053836 | MS.gene99551 | 0.876606 | 1.22E-68 | -1.69E-46 |
MS.gene053928 | MS.gene99551 | 0.818207 | 2.21E-52 | -1.69E-46 |
MS.gene054011 | MS.gene99551 | 0.811052 | 8.49E-51 | -1.69E-46 |
MS.gene054123 | MS.gene99551 | 0.803169 | 3.96E-49 | -1.69E-46 |
MS.gene054183 | MS.gene99551 | 0.812779 | 3.57E-51 | -1.69E-46 |
MS.gene054184 | MS.gene99551 | 0.801253 | 9.82E-49 | -1.69E-46 |
MS.gene054349 | MS.gene99551 | 0.817046 | 4.04E-52 | -1.69E-46 |
MS.gene054473 | MS.gene99551 | 0.858403 | 8.44E-63 | -1.69E-46 |
MS.gene054542 | MS.gene99551 | 0.824357 | 8.43E-54 | -1.69E-46 |
MS.gene054930 | MS.gene99551 | 0.847631 | 1.02E-59 | -1.69E-46 |
MS.gene055116 | MS.gene99551 | 0.845607 | 3.66E-59 | -1.69E-46 |
MS.gene055277 | MS.gene99551 | 0.835911 | 1.27E-56 | -1.69E-46 |
MS.gene055390 | MS.gene99551 | 0.805073 | 1.59E-49 | -1.69E-46 |
MS.gene055422 | MS.gene99551 | 0.854493 | 1.19E-61 | -1.69E-46 |
MS.gene055428 | MS.gene99551 | 0.850748 | 1.39E-60 | -1.69E-46 |
MS.gene05553 | MS.gene99551 | 0.824546 | 7.61E-54 | -1.69E-46 |
MS.gene055604 | MS.gene99551 | 0.850845 | 1.30E-60 | -1.69E-46 |
MS.gene055859 | MS.gene99551 | 0.80519 | 1.50E-49 | -1.69E-46 |
MS.gene056191 | MS.gene99551 | 0.836023 | 1.19E-56 | -1.69E-46 |
MS.gene056407 | MS.gene99551 | 0.823413 | 1.40E-53 | -1.69E-46 |
MS.gene056609 | MS.gene99551 | 0.804418 | 2.18E-49 | -1.69E-46 |
MS.gene056612 | MS.gene99551 | 0.818746 | 1.67E-52 | -1.69E-46 |
MS.gene056659 | MS.gene99551 | 0.838849 | 2.25E-57 | -1.69E-46 |
MS.gene05702 | MS.gene99551 | 0.844278 | 8.35E-59 | -1.69E-46 |
MS.gene057121 | MS.gene99551 | 0.81409 | 1.84E-51 | -1.69E-46 |
MS.gene057124 | MS.gene99551 | 0.816023 | 6.85E-52 | -1.69E-46 |
MS.gene05733 | MS.gene99551 | 0.805158 | 1.53E-49 | -1.69E-46 |
MS.gene057448 | MS.gene99551 | 0.842656 | 2.26E-58 | -1.69E-46 |
MS.gene057449 | MS.gene99551 | 0.829988 | 3.78E-55 | -1.69E-46 |
MS.gene057450 | MS.gene99551 | 0.847874 | 8.77E-60 | -1.69E-46 |
MS.gene057469 | MS.gene99551 | 0.823521 | 1.32E-53 | -1.69E-46 |
MS.gene057749 | MS.gene99551 | 0.863728 | 2.02E-64 | -1.69E-46 |
MS.gene057754 | MS.gene99551 | 0.800082 | 1.70E-48 | -1.69E-46 |
MS.gene057796 | MS.gene99551 | 0.820466 | 6.76E-53 | -1.69E-46 |
MS.gene057823 | MS.gene99551 | 0.849348 | 3.43E-60 | -1.69E-46 |
MS.gene057825 | MS.gene99551 | 0.81655 | 5.22E-52 | -1.69E-46 |
MS.gene058002 | MS.gene99551 | 0.873182 | 1.79E-67 | -1.69E-46 |
MS.gene058082 | MS.gene99551 | 0.824952 | 6.11E-54 | -1.69E-46 |
MS.gene05811 | MS.gene99551 | 0.854651 | 1.07E-61 | -1.69E-46 |
MS.gene058142 | MS.gene99551 | 0.8338 | 4.33E-56 | -1.69E-46 |
MS.gene058365 | MS.gene99551 | 0.819559 | 1.09E-52 | -1.69E-46 |
MS.gene058660 | MS.gene99551 | 0.809032 | 2.31E-50 | -1.69E-46 |
MS.gene058710 | MS.gene99551 | 0.881063 | 3.28E-70 | -1.69E-46 |
MS.gene058749 | MS.gene99551 | 0.823325 | 1.47E-53 | -1.69E-46 |
MS.gene05886 | MS.gene99551 | 0.865002 | 8.10E-65 | -1.69E-46 |
MS.gene058928 | MS.gene99551 | 0.828028 | 1.13E-54 | -1.69E-46 |
MS.gene058949 | MS.gene99551 | 0.828322 | 9.59E-55 | -1.69E-46 |
MS.gene05907 | MS.gene99551 | 0.836038 | 1.18E-56 | -1.69E-46 |
MS.gene059285 | MS.gene99551 | 0.877467 | 6.14E-69 | -1.69E-46 |
MS.gene059420 | MS.gene99551 | 0.842708 | 2.19E-58 | -1.69E-46 |
MS.gene059421 | MS.gene99551 | 0.800651 | 1.30E-48 | -1.69E-46 |
MS.gene059518 | MS.gene99551 | 0.837998 | 3.73E-57 | -1.69E-46 |
MS.gene059597 | MS.gene99551 | 0.843916 | 1.04E-58 | -1.69E-46 |
MS.gene059676 | MS.gene99551 | 0.808762 | 2.64E-50 | -1.69E-46 |
MS.gene059688 | MS.gene99551 | 0.839725 | 1.33E-57 | -1.69E-46 |
MS.gene059692 | MS.gene99551 | 0.853456 | 2.36E-61 | -1.69E-46 |
MS.gene059695 | MS.gene99551 | 0.851317 | 9.60E-61 | -1.69E-46 |
MS.gene05984 | MS.gene99551 | 0.866975 | 1.92E-65 | -1.69E-46 |
MS.gene059894 | MS.gene99551 | 0.855102 | 7.90E-62 | -1.69E-46 |
MS.gene059899 | MS.gene99551 | 0.814711 | 1.34E-51 | -1.69E-46 |
MS.gene059974 | MS.gene99551 | 0.815744 | 7.90E-52 | -1.69E-46 |
MS.gene060247 | MS.gene99551 | 0.803785 | 2.95E-49 | -1.69E-46 |
MS.gene06037 | MS.gene99551 | 0.857186 | 1.94E-62 | -1.69E-46 |
MS.gene060407 | MS.gene99551 | 0.816462 | 5.46E-52 | -1.69E-46 |
MS.gene060495 | MS.gene99551 | 0.80636 | 8.54E-50 | -1.69E-46 |
MS.gene060559 | MS.gene99551 | 0.800967 | 1.12E-48 | -1.69E-46 |
MS.gene061049 | MS.gene99551 | 0.890412 | 1.01E-73 | -1.69E-46 |
MS.gene061051 | MS.gene99551 | -0.823677 | 1.22E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99551.t1 | MTR_8g045695 | 89.744 | 156 | 16 | 0 | 1 | 156 | 1 | 156 | 5.44e-103 | 291 |
MS.gene99551.t1 | MTR_8g045665 | 89.103 | 156 | 17 | 0 | 1 | 156 | 1 | 156 | 1.74e-101 | 288 |
MS.gene99551.t1 | MTR_8g045735 | 85.714 | 154 | 22 | 0 | 1 | 154 | 1 | 154 | 2.60e-97 | 277 |
MS.gene99551.t1 | MTR_8g045640 | 83.974 | 156 | 25 | 0 | 1 | 156 | 1 | 156 | 1.24e-95 | 273 |
MS.gene99551.t1 | MTR_8g045560 | 82.692 | 156 | 27 | 0 | 1 | 156 | 1 | 156 | 1.74e-94 | 270 |
MS.gene99551.t1 | MTR_8g045520 | 74.522 | 157 | 39 | 1 | 1 | 156 | 1 | 157 | 1.99e-84 | 245 |
MS.gene99551.t1 | MTR_8g045400 | 69.427 | 157 | 46 | 2 | 1 | 156 | 1 | 156 | 1.41e-77 | 227 |
MS.gene99551.t1 | MTR_8g045490 | 67.516 | 157 | 49 | 2 | 1 | 156 | 1 | 156 | 1.13e-76 | 225 |
MS.gene99551.t1 | MTR_8g045570 | 68.421 | 152 | 47 | 1 | 1 | 151 | 1 | 152 | 1.42e-75 | 222 |
MS.gene99551.t1 | MTR_8g045555 | 65.132 | 152 | 52 | 1 | 1 | 151 | 1 | 152 | 1.20e-72 | 215 |
MS.gene99551.t1 | MTR_8g045300 | 62.821 | 156 | 57 | 1 | 1 | 155 | 1 | 156 | 1.24e-71 | 213 |
MS.gene99551.t1 | MTR_1g030810 | 43.137 | 153 | 83 | 3 | 1 | 150 | 1 | 152 | 3.55e-39 | 130 |
MS.gene99551.t1 | MTR_1g030820 | 38.562 | 153 | 90 | 3 | 1 | 150 | 1 | 152 | 2.25e-37 | 125 |
MS.gene99551.t1 | MTR_1g030840 | 38.462 | 156 | 87 | 5 | 1 | 148 | 1 | 155 | 9.57e-29 | 103 |
MS.gene99551.t1 | MTR_8g012550 | 33.333 | 150 | 96 | 4 | 6 | 153 | 8 | 155 | 5.33e-27 | 99.4 |
MS.gene99551.t1 | MTR_1g031640 | 39.189 | 148 | 80 | 6 | 7 | 151 | 7 | 147 | 2.16e-22 | 87.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99551.t1 | AT1G70890 | 37.255 | 153 | 92 | 4 | 3 | 152 | 7 | 158 | 3.38e-25 | 94.7 |
MS.gene99551.t1 | AT5G28010 | 34.641 | 153 | 96 | 4 | 3 | 152 | 15 | 166 | 3.56e-25 | 95.1 |
MS.gene99551.t1 | AT5G28010 | 34.641 | 153 | 96 | 4 | 3 | 152 | 15 | 166 | 3.56e-25 | 95.1 |
MS.gene99551.t1 | AT1G70840 | 34.641 | 153 | 96 | 4 | 3 | 152 | 20 | 171 | 4.90e-24 | 92.4 |
MS.gene99551.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 22 | 173 | 4.45e-23 | 89.7 |
MS.gene99551.t1 | AT1G70830 | 35.065 | 154 | 96 | 4 | 3 | 153 | 22 | 174 | 6.92e-23 | 90.1 |
MS.gene99551.t1 | AT1G70830 | 35.948 | 153 | 94 | 4 | 3 | 152 | 137 | 288 | 1.70e-22 | 90.9 |
MS.gene99551.t1 | AT1G70830 | 32.990 | 97 | 63 | 2 | 59 | 153 | 31 | 127 | 1.38e-11 | 61.2 |
MS.gene99551.t1 | AT1G70830 | 35.065 | 154 | 96 | 4 | 3 | 153 | 22 | 174 | 4.43e-22 | 89.0 |
MS.gene99551.t1 | AT1G70830 | 35.948 | 153 | 94 | 4 | 3 | 152 | 184 | 335 | 6.17e-22 | 90.1 |
MS.gene99551.t1 | AT1G70830 | 35.065 | 154 | 96 | 4 | 3 | 153 | 22 | 174 | 8.84e-22 | 89.7 |
MS.gene99551.t1 | AT5G28000 | 33.333 | 153 | 98 | 4 | 3 | 152 | 13 | 164 | 9.99e-22 | 86.3 |
MS.gene99551.t1 | AT1G70850 | 36.364 | 143 | 87 | 4 | 13 | 152 | 175 | 316 | 4.90e-21 | 87.4 |
MS.gene99551.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 1.58e-20 | 85.9 |
MS.gene99551.t1 | AT1G70850 | 36.364 | 143 | 87 | 4 | 13 | 152 | 175 | 316 | 4.90e-21 | 87.4 |
MS.gene99551.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 1.58e-20 | 85.9 |
MS.gene99551.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 5.97e-21 | 85.9 |
MS.gene99551.t1 | AT4G23670 | 33.117 | 154 | 97 | 5 | 1 | 151 | 1 | 151 | 1.61e-19 | 80.1 |
MS.gene99551.t1 | AT1G70870 | 42.268 | 97 | 54 | 2 | 55 | 150 | 43 | 138 | 3.16e-19 | 79.0 |
MS.gene99551.t1 | AT1G14930 | 28.662 | 157 | 108 | 4 | 1 | 155 | 1 | 155 | 2.33e-18 | 77.0 |
MS.gene99551.t1 | AT2G01520 | 28.758 | 153 | 105 | 4 | 1 | 151 | 1 | 151 | 1.21e-17 | 75.1 |
MS.gene99551.t1 | AT1G70880 | 31.373 | 153 | 101 | 4 | 3 | 152 | 8 | 159 | 2.17e-17 | 74.7 |
MS.gene99551.t1 | AT1G24020 | 32.258 | 155 | 96 | 4 | 1 | 150 | 1 | 151 | 1.16e-16 | 72.8 |
MS.gene99551.t1 | AT1G24020 | 32.258 | 155 | 96 | 4 | 1 | 150 | 1 | 151 | 1.16e-16 | 72.8 |
MS.gene99551.t1 | AT1G23130 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 1.66e-16 | 72.4 |
MS.gene99551.t1 | AT1G23120 | 29.787 | 141 | 93 | 4 | 10 | 149 | 10 | 145 | 1.91e-16 | 72.0 |
MS.gene99551.t1 | AT1G23120 | 29.787 | 141 | 93 | 4 | 10 | 149 | 60 | 195 | 4.47e-16 | 72.0 |
MS.gene99551.t1 | AT1G14940 | 27.389 | 157 | 110 | 4 | 1 | 155 | 1 | 155 | 1.12e-15 | 70.1 |
MS.gene99551.t1 | AT2G01530 | 28.105 | 153 | 106 | 4 | 1 | 151 | 1 | 151 | 1.54e-15 | 69.7 |
MS.gene99551.t1 | AT1G35260 | 30.556 | 144 | 95 | 4 | 9 | 149 | 8 | 149 | 2.33e-15 | 69.3 |
MS.gene99551.t1 | AT4G14060 | 27.451 | 153 | 107 | 4 | 1 | 151 | 1 | 151 | 4.45e-15 | 68.6 |
MS.gene99551.t1 | AT4G23680 | 28.758 | 153 | 103 | 5 | 1 | 150 | 1 | 150 | 7.24e-15 | 67.8 |
MS.gene99551.t1 | AT1G14950 | 26.752 | 157 | 111 | 4 | 1 | 155 | 1 | 155 | 1.06e-14 | 67.8 |
MS.gene99551.t1 | AT1G30990 | 29.139 | 151 | 102 | 5 | 1 | 149 | 1 | 148 | 1.76e-14 | 67.0 |
MS.gene99551.t1 | AT1G35310 | 30.935 | 139 | 92 | 4 | 13 | 149 | 12 | 148 | 4.11e-14 | 65.9 |
MS.gene99551.t1 | AT3G26460 | 27.451 | 153 | 108 | 3 | 1 | 151 | 1 | 152 | 3.43e-13 | 63.5 |
MS.gene99551.t1 | AT1G14960 | 25.161 | 155 | 112 | 4 | 1 | 153 | 1 | 153 | 3.25e-12 | 60.8 |
MS.gene99551.t1 | AT3G26450 | 24.183 | 153 | 113 | 3 | 1 | 151 | 1 | 152 | 1.40e-11 | 59.3 |
Find 35 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAATTACTTACAAGCTGTT+TGG | 0.370047 | 8.1:+59643473 | MS.gene99551:CDS |
CACAAACTTTGTGCACTTCG+TGG | 0.405990 | 8.1:-59640559 | None:intergenic |
ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8.1:+59643555 | MS.gene99551:CDS |
AGGAAGTCCATCCAGCCATT+TGG | 0.420702 | 8.1:-59643617 | None:intergenic |
TGGAGATATTGAAAACTATA+AGG | 0.439418 | 8.1:+59643496 | MS.gene99551:CDS |
ATCTTCACCTTCATGAAGCT+TGG | 0.441586 | 8.1:-59640597 | None:intergenic |
GGGAAACTTATCACTGAACT+TGG | 0.445682 | 8.1:+59640488 | MS.gene99551:CDS |
AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.1:+59640641 | MS.gene99551:CDS |
AGGTGAAGATTGGCATCAAA+AGG | 0.482747 | 8.1:+59640610 | MS.gene99551:CDS |
ATTACTTACAAGCTGTTTGG+TGG | 0.484942 | 8.1:+59643476 | MS.gene99551:CDS |
TTTCCAAATATGGTGCTCGC+TGG | 0.484997 | 8.1:+59640467 | None:intergenic |
AGCTTCATGAAGGTGAAGAT+TGG | 0.494334 | 8.1:+59640600 | MS.gene99551:CDS |
TTCCAAATATGGTGCTCGCT+GGG | 0.503897 | 8.1:+59640468 | None:intergenic |
TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8.1:+59643667 | MS.gene99551:CDS |
AAGAGCACTAGAGATATTGA+TGG | 0.505384 | 8.1:+59643644 | MS.gene99551:CDS |
TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8.1:+59643660 | MS.gene99551:CDS |
AGATTGGCATCAAAAGGATT+CGG | 0.511486 | 8.1:+59640616 | MS.gene99551:CDS |
ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8.1:+59643659 | MS.gene99551:CDS |
GAACTTGGGATCAAATCACC+TGG | 0.553911 | 8.1:+59640503 | MS.gene99551:CDS |
TATCTCTAGTGCTCTTGCTA+AGG | 0.564297 | 8.1:-59643637 | None:intergenic |
ATGTTGATACTCCAAATGGC+TGG | 0.578150 | 8.1:+59643606 | MS.gene99551:CDS |
GAAGTGCTTAACAAGGCTGA+TGG | 0.580204 | 8.1:+59643536 | MS.gene99551:CDS |
AACTTGGGATCAAATCACCT+GGG | 0.581574 | 8.1:+59640504 | MS.gene99551:CDS |
CATCATGCCAAGCTTCATGA+AGG | 0.583004 | 8.1:+59640590 | MS.gene99551:CDS |
TGATACTCCAAATGGCTGGA+TGG | 0.587093 | 8.1:+59643610 | MS.gene99551:CDS |
AAAAGGATTCGGTTAAACAC+TGG | 0.591334 | 8.1:+59640627 | MS.gene99551:CDS |
GAGGATGTTGATACTCCAAA+TGG | 0.593330 | 8.1:+59643602 | MS.gene99551:CDS |
GGTACACACAAGCAATAAGA+AGG | 0.608553 | 8.1:+59643424 | MS.gene99551:CDS |
AGTTTGAAGAACTTCTCCCC+AGG | 0.610513 | 8.1:-59640521 | None:intergenic |
GGAAACTTATCACTGAACTT+GGG | 0.624297 | 8.1:+59640489 | MS.gene99551:CDS |
CTACATAACAACAGATGGTG+AGG | 0.642457 | 8.1:+59643403 | MS.gene99551:intron |
CATCTTAGAAGTGCTTAACA+AGG | 0.644958 | 8.1:+59643529 | MS.gene99551:CDS |
TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8.1:+59643661 | MS.gene99551:CDS |
TGATTATGAGAAGAACAATG+AGG | 0.694185 | 8.1:+59643583 | MS.gene99551:CDS |
ACTTGGGATCAAATCACCTG+GGG | 0.705917 | 8.1:+59640505 | MS.gene99551:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTTATAATATTTAAAAA+GGG | + | chr8.1:59640779-59640798 | MS.gene99551:intron | 0.0% |
!! | TTAATTTATAATATTTAAAA+AGG | + | chr8.1:59640778-59640797 | MS.gene99551:intron | 0.0% |
!! | ATAAAAAAAAGATATTGATA+AGG | - | chr8.1:59642998-59643017 | None:intergenic | 10.0% |
!! | ATTATAAATTAAGTGATTAT+AGG | - | chr8.1:59641648-59641667 | None:intergenic | 10.0% |
!! | AAAAAACATCGTTATTAATA+TGG | - | chr8.1:59641853-59641872 | None:intergenic | 15.0% |
!! | GCTAATATAATATTGTAAAT+AGG | + | chr8.1:59640966-59640985 | MS.gene99551:intron | 15.0% |
!! | GCTTTACTTAAAATAATAAT+AGG | + | chr8.1:59641701-59641720 | MS.gene99551:intron | 15.0% |
!! | TCGTTTATTTATTAAATGTA+TGG | - | chr8.1:59642580-59642599 | None:intergenic | 15.0% |
!!! | AAATTGATTTTGAAAGAAAA+TGG | + | chr8.1:59641354-59641373 | MS.gene99551:intron | 15.0% |
!!! | ATAGAAATTCATATTTTTCA+AGG | - | chr8.1:59642004-59642023 | None:intergenic | 15.0% |
!!! | CGTATTTAATATTTTTTTAG+AGG | + | chr8.1:59643343-59643362 | MS.gene99551:intron | 15.0% |
!!! | TGTATATGGTTTTATTTTTA+AGG | - | chr8.1:59643065-59643084 | None:intergenic | 15.0% |
!!! | TTAAAAAAAACACTTTCTTT+TGG | - | chr8.1:59641395-59641414 | None:intergenic | 15.0% |
!!! | TTAAATAGTCTTATACATTA+GGG | - | chr8.1:59643031-59643050 | None:intergenic | 15.0% |
!!! | TTTAAATAGTCTTATACATT+AGG | - | chr8.1:59643032-59643051 | None:intergenic | 15.0% |
!!! | TTTTTTTTTAACTTGTTTAG+TGG | - | chr8.1:59642027-59642046 | None:intergenic | 15.0% |
!! | AAATTAGTTGTACTAGAAAT+GGG | - | chr8.1:59643124-59643143 | None:intergenic | 20.0% |
!! | ATAATATTTAAAAAGGGAAG+AGG | + | chr8.1:59640785-59640804 | MS.gene99551:intron | 20.0% |
!! | ATTAATTTATGTATGGTCTA+GGG | + | chr8.1:59641946-59641965 | MS.gene99551:intron | 20.0% |
!! | TATTAATTTATGTATGGTCT+AGG | + | chr8.1:59641945-59641964 | MS.gene99551:intron | 20.0% |
!! | TGCATATAAGAATATGTATA+TGG | - | chr8.1:59643079-59643098 | None:intergenic | 20.0% |
!! | TTAAACATAACTCTTCATTA+TGG | - | chr8.1:59641040-59641059 | None:intergenic | 20.0% |
!! | TTCGAAATAAAAATCACATA+CGG | - | chr8.1:59642691-59642710 | None:intergenic | 20.0% |
!!! | AACTAGTTTATTTTCTAGAT+AGG | - | chr8.1:59641176-59641195 | None:intergenic | 20.0% |
!!! | ATTGTGATTTTATAACTTCA+AGG | - | chr8.1:59642879-59642898 | None:intergenic | 20.0% |
!!! | CAAAAATATTTGGTTTTTTG+CGG | - | chr8.1:59642357-59642376 | None:intergenic | 20.0% |
!!! | TAATATTTACTTTTACGGTT+TGG | - | chr8.1:59642453-59642472 | None:intergenic | 20.0% |
!!! | TATTAAATACGTTTTCTCAA+AGG | - | chr8.1:59643334-59643353 | None:intergenic | 20.0% |
!!! | TGACTATTCTAAAAATTAGT+CGG | - | chr8.1:59642652-59642671 | None:intergenic | 20.0% |
! | AAAATTACTTACAAGCTGTT+TGG | + | chr8.1:59643473-59643492 | MS.gene99551:CDS | 25.0% |
! | CAAACACATCCAAAAATATT+TGG | - | chr8.1:59642367-59642386 | None:intergenic | 25.0% |
! | CAAATTAGTTGTACTAGAAA+TGG | - | chr8.1:59643125-59643144 | None:intergenic | 25.0% |
! | TACATATGTAAAACGAATTG+AGG | - | chr8.1:59640876-59640895 | None:intergenic | 25.0% |
! | TGGAGATATTGAAAACTATA+AGG | + | chr8.1:59643496-59643515 | MS.gene99551:CDS | 25.0% |
! | TTAACATTCTTACTTCTTGT+TGG | - | chr8.1:59641776-59641795 | None:intergenic | 25.0% |
! | TTTGCAGTATTATTTCAGAT+CGG | - | chr8.1:59642314-59642333 | None:intergenic | 25.0% |
!! | ACTTTTGTAAAAAGTTAACG+AGG | + | chr8.1:59643271-59643290 | MS.gene99551:intron | 25.0% |
!! | CGCAAAAAACCAAATATTTT+TGG | + | chr8.1:59642355-59642374 | MS.gene99551:intron | 25.0% |
!! | TTTTGCGGTTTTCAATTTTT+TGG | - | chr8.1:59642342-59642361 | None:intergenic | 25.0% |
!!! | CAAATATTTTTGGATGTGTT+TGG | + | chr8.1:59642365-59642384 | MS.gene99551:intron | 25.0% |
!!! | GATACTTCAATGTTTTGAAT+TGG | + | chr8.1:59642061-59642080 | MS.gene99551:intron | 25.0% |
!!! | GTTTTGAATTGGATATGATT+GGG | + | chr8.1:59642072-59642091 | MS.gene99551:intron | 25.0% |
!!! | TGTTTTGAATTGGATATGAT+TGG | + | chr8.1:59642071-59642090 | MS.gene99551:intron | 25.0% |
!!! | TTCTTTTGGACCATTTTTTT+GGG | - | chr8.1:59641381-59641400 | None:intergenic | 25.0% |
!!! | TTTCTTTTGGACCATTTTTT+TGG | - | chr8.1:59641382-59641401 | None:intergenic | 25.0% |
AAAACGTAAACTCGTAAACA+CGG | + | chr8.1:59641413-59641432 | MS.gene99551:intron | 30.0% | |
AAACTATTCAACCTCAACTA+GGG | - | chr8.1:59642761-59642780 | None:intergenic | 30.0% | |
AACATAACTCTTCATTATGG+TGG | - | chr8.1:59641037-59641056 | None:intergenic | 30.0% | |
AGAAAATGGACCCAAAAAAA+TGG | + | chr8.1:59641368-59641387 | MS.gene99551:intron | 30.0% | |
ATTGAAAACACTTTATCGTC+TGG | - | chr8.1:59641284-59641303 | None:intergenic | 30.0% | |
GGAGACGTATATAATTTACA+AGG | + | chr8.1:59641679-59641698 | MS.gene99551:intron | 30.0% | |
TGATTATGAGAAGAACAATG+AGG | + | chr8.1:59643583-59643602 | MS.gene99551:CDS | 30.0% | |
TGTACTAGAAATGGGTATAT+TGG | - | chr8.1:59643116-59643135 | None:intergenic | 30.0% | |
TTAATGTCGAAGTAAGTTCA+AGG | - | chr8.1:59641325-59641344 | None:intergenic | 30.0% | |
TTCAAGGTGAATAAGTAAGT+GGG | - | chr8.1:59641988-59642007 | None:intergenic | 30.0% | |
TTTCAAGGTGAATAAGTAAG+TGG | - | chr8.1:59641989-59642008 | None:intergenic | 30.0% | |
TTTGTAAAAACCGTTAGGAT+CGG | + | chr8.1:59642395-59642414 | MS.gene99551:intron | 30.0% | |
! | CTAGTACAACTAATTTGTCT+TGG | + | chr8.1:59643128-59643147 | MS.gene99551:intron | 30.0% |
! | GCAAGTAAAAAGAAAAGTGT+TGG | - | chr8.1:59643237-59643256 | None:intergenic | 30.0% |
!! | GTACTCTAAAATTTCACTTC+TGG | + | chr8.1:59642209-59642228 | MS.gene99551:intron | 30.0% |
!! | GTTGTTTTGTAAAAACCGTT+AGG | + | chr8.1:59642390-59642409 | MS.gene99551:intron | 30.0% |
!!! | AACTTGTGAACTTGCTTTTT+TGG | - | chr8.1:59641135-59641154 | None:intergenic | 30.0% |
!!! | ACTCGTTTTTTTGGTGAAAT+CGG | - | chr8.1:59641492-59641511 | None:intergenic | 30.0% |
!!! | GCTTTTTTGGATGGTTTTTT+TGG | - | chr8.1:59641122-59641141 | None:intergenic | 30.0% |
!!! | TTTACTTTTACGGTTTGGTT+CGG | - | chr8.1:59642448-59642467 | None:intergenic | 30.0% |
!!! | TTTTGGATGGTTTTTTTGGA+TGG | - | chr8.1:59641118-59641137 | None:intergenic | 30.0% |
AAACACTGGACTTATGTCAT+AGG | + | chr8.1:59640641-59640660 | MS.gene99551:CDS | 35.0% | |
AAATCACATACGGATCAGTT+CGG | - | chr8.1:59642681-59642700 | None:intergenic | 35.0% | |
AATAAGTAAGTGGGGTGTAT+GGG | - | chr8.1:59641979-59641998 | None:intergenic | 35.0% | |
ACATTCTTACTTCTTGTTGG+TGG | - | chr8.1:59641773-59641792 | None:intergenic | 35.0% | |
AGATTGGCATCAAAAGGATT+CGG | + | chr8.1:59640616-59640635 | MS.gene99551:CDS | 35.0% | |
AGTTAACACGTGTTAAACTC+GGG | - | chr8.1:59641448-59641467 | None:intergenic | 35.0% | |
ATTACTTACAAGCTGTTTGG+TGG | + | chr8.1:59643476-59643495 | MS.gene99551:CDS | 35.0% | |
CACTAGATAAGATCACGTTA+TGG | + | chr8.1:59640816-59640835 | MS.gene99551:intron | 35.0% | |
CGAGTTGTAAAACCTTACTT+GGG | - | chr8.1:59640845-59640864 | None:intergenic | 35.0% | |
GAAACTATTCAACCTCAACT+AGG | - | chr8.1:59642762-59642781 | None:intergenic | 35.0% | |
GAGTTAACACGTGTTAAACT+CGG | - | chr8.1:59641449-59641468 | None:intergenic | 35.0% | |
GAGTTTAACACGTGTTAACT+CGG | + | chr8.1:59641448-59641467 | MS.gene99551:intron | 35.0% | |
GAGTTTAGGTGTATCTTGAA+GGG | + | chr8.1:59642094-59642113 | MS.gene99551:intron | 35.0% | |
GGAAACTTATCACTGAACTT+GGG | + | chr8.1:59640489-59640508 | MS.gene99551:CDS | 35.0% | |
GGAGTAGAATTTGATGAAGT+GGG | - | chr8.1:59641263-59641282 | None:intergenic | 35.0% | |
GTAAGTTCAAGGCATGTATT+TGG | - | chr8.1:59641314-59641333 | None:intergenic | 35.0% | |
TCAAAAACGTGTTAACTCGA+AGG | - | chr8.1:59641518-59641537 | None:intergenic | 35.0% | |
TCAAGGTGAATAAGTAAGTG+GGG | - | chr8.1:59641987-59642006 | None:intergenic | 35.0% | |
TGGAGTAGAATTTGATGAAG+TGG | - | chr8.1:59641264-59641283 | None:intergenic | 35.0% | |
TTGGATATGATTGGGAGTTT+AGG | + | chr8.1:59642080-59642099 | MS.gene99551:intron | 35.0% | |
TTTGATGAAGTGGGAGATTA+AGG | - | chr8.1:59641254-59641273 | None:intergenic | 35.0% | |
! | AAAAGGATTCGGTTAAACAC+TGG | + | chr8.1:59640627-59640646 | MS.gene99551:CDS | 35.0% |
! | ACGAGTTAACACTTGATTTG+TGG | + | chr8.1:59641567-59641586 | MS.gene99551:intron | 35.0% |
! | ATTGATGGTCATCTTGTCAA+AGG | + | chr8.1:59643659-59643678 | MS.gene99551:CDS | 35.0% |
! | TCGAGTTGTAAAACCTTACT+TGG | - | chr8.1:59640846-59640865 | None:intergenic | 35.0% |
! | TGAGTTTAACTCAGTTGGTA+GGG | + | chr8.1:59641909-59641928 | MS.gene99551:intron | 35.0% |
! | TTCAACATGGGTTGAGTTTA+GGG | + | chr8.1:59642273-59642292 | MS.gene99551:intron | 35.0% |
! | TTGATGGTCATCTTGTCAAA+GGG | + | chr8.1:59643660-59643679 | MS.gene99551:CDS | 35.0% |
!! | AAGAGCACTAGAGATATTGA+TGG | + | chr8.1:59643644-59643663 | MS.gene99551:CDS | 35.0% |
!! | ATTATAGGTTCTAAACCCAG+AGG | - | chr8.1:59641633-59641652 | None:intergenic | 35.0% |
!! | CATCTTAGAAGTGCTTAACA+AGG | + | chr8.1:59643529-59643548 | MS.gene99551:CDS | 35.0% |
!! | GTACTCTAAAATTTCACTGC+TGG | + | chr8.1:59642127-59642146 | MS.gene99551:intron | 35.0% |
!! | TTATAGGTTCTAAACCCAGA+GGG | - | chr8.1:59641632-59641651 | None:intergenic | 35.0% |
!!! | CGAAGGTAAACTCGTTTTTT+TGG | - | chr8.1:59641501-59641520 | None:intergenic | 35.0% |
!!! | TGTGAACTTGCTTTTTTGGA+TGG | - | chr8.1:59641131-59641150 | None:intergenic | 35.0% |
AACTTGGGATCAAATCACCT+GGG | + | chr8.1:59640504-59640523 | MS.gene99551:CDS | 40.0% | |
AGCTTCATGAAGGTGAAGAT+TGG | + | chr8.1:59640600-59640619 | MS.gene99551:CDS | 40.0% | |
AGGTGAAGATTGGCATCAAA+AGG | + | chr8.1:59640610-59640629 | MS.gene99551:CDS | 40.0% | |
ATAAGTAAGTGGGGTGTATG+GGG | - | chr8.1:59641978-59641997 | None:intergenic | 40.0% | |
ATCTTCACCTTCATGAAGCT+TGG | - | chr8.1:59640600-59640619 | None:intergenic | 40.0% | |
ATGGAAGTTCTGCTGTTAGA+TGG | + | chr8.1:59643555-59643574 | MS.gene99551:CDS | 40.0% | |
ATGTTGATACTCCAAATGGC+TGG | + | chr8.1:59643606-59643625 | MS.gene99551:CDS | 40.0% | |
CACCATCTGTTGTTATGTAG+AGG | - | chr8.1:59643403-59643422 | None:intergenic | 40.0% | |
CTACATAACAACAGATGGTG+AGG | + | chr8.1:59643403-59643422 | MS.gene99551:intron | 40.0% | |
CTCTGTGAGTTTAACTCAGT+TGG | + | chr8.1:59641904-59641923 | MS.gene99551:intron | 40.0% | |
CTCTTGTCTGAGTTCAACAT+GGG | + | chr8.1:59642261-59642280 | MS.gene99551:intron | 40.0% | |
GAAATTCGATCCGATCCTAA+CGG | - | chr8.1:59642408-59642427 | None:intergenic | 40.0% | |
GAATAAGTAAGTGGGGTGTA+TGG | - | chr8.1:59641980-59641999 | None:intergenic | 40.0% | |
GAGGATGTTGATACTCCAAA+TGG | + | chr8.1:59643602-59643621 | MS.gene99551:CDS | 40.0% | |
GGAGTTTAGGTGTATCTTGA+AGG | + | chr8.1:59642093-59642112 | MS.gene99551:intron | 40.0% | |
GGGAAACTTATCACTGAACT+TGG | + | chr8.1:59640488-59640507 | MS.gene99551:CDS | 40.0% | |
GGTACACACAAGCAATAAGA+AGG | + | chr8.1:59643424-59643443 | MS.gene99551:CDS | 40.0% | |
GTGAGTTTAACTCAGTTGGT+AGG | + | chr8.1:59641908-59641927 | MS.gene99551:intron | 40.0% | |
TATCTCTAGTGCTCTTGCTA+AGG | - | chr8.1:59643640-59643659 | None:intergenic | 40.0% | |
TCATCTTGTCAAAGGGGAAA+AGG | + | chr8.1:59643667-59643686 | MS.gene99551:CDS | 40.0% | |
TGATGGTCATCTTGTCAAAG+GGG | + | chr8.1:59643661-59643680 | MS.gene99551:CDS | 40.0% | |
TGCCTCTACATAACAACAGA+TGG | + | chr8.1:59643398-59643417 | MS.gene99551:intron | 40.0% | |
! | CAAAACCGATTCAAACCACA+TGG | + | chr8.1:59642729-59642748 | MS.gene99551:intron | 40.0% |
! | GTTCAACATGGGTTGAGTTT+AGG | + | chr8.1:59642272-59642291 | MS.gene99551:intron | 40.0% |
!! | AAAGTGTTGGAGCAACAAAG+TGG | - | chr8.1:59643224-59643243 | None:intergenic | 40.0% |
!! | CTGCTGGTGATGTTTTGAAT+TGG | + | chr8.1:59642143-59642162 | MS.gene99551:intron | 40.0% |
!! | GACTCTGATGGGTTAAACTT+GGG | - | chr8.1:59641602-59641621 | None:intergenic | 40.0% |
!! | TGACTCTGATGGGTTAAACT+TGG | - | chr8.1:59641603-59641622 | None:intergenic | 40.0% |
ACATACGGATCAGTTCGGTT+TGG | - | chr8.1:59642676-59642695 | None:intergenic | 45.0% | |
ACGTTATGGAGTCCCAAGTA+AGG | + | chr8.1:59640830-59640849 | MS.gene99551:intron | 45.0% | |
ACTTGGGATCAAATCACCTG+GGG | + | chr8.1:59640505-59640524 | MS.gene99551:CDS | 45.0% | |
AGGGTTTGTCTGACTCTGAT+GGG | - | chr8.1:59641613-59641632 | None:intergenic | 45.0% | |
AGTTTGAAGAACTTCTCCCC+AGG | - | chr8.1:59640524-59640543 | None:intergenic | 45.0% | |
CACAAACTTTGTGCACTTCG+TGG | - | chr8.1:59640562-59640581 | None:intergenic | 45.0% | |
CATCATGCCAAGCTTCATGA+AGG | + | chr8.1:59640590-59640609 | MS.gene99551:CDS | 45.0% | |
GAACTTGGGATCAAATCACC+TGG | + | chr8.1:59640503-59640522 | MS.gene99551:CDS | 45.0% | |
GCTCTTGTCTGAGTTCAACA+TGG | + | chr8.1:59642260-59642279 | MS.gene99551:intron | 45.0% | |
GTGTCAAGACTCAAGATGTG+AGG | - | chr8.1:59642915-59642934 | None:intergenic | 45.0% | |
GTTCGCCATGTGGTTTGAAT+CGG | - | chr8.1:59642737-59642756 | None:intergenic | 45.0% | |
TGATACTCCAAATGGCTGGA+TGG | + | chr8.1:59643610-59643629 | MS.gene99551:CDS | 45.0% | |
! | GAAGTGCTTAACAAGGCTGA+TGG | + | chr8.1:59643536-59643555 | MS.gene99551:CDS | 45.0% |
!! | AATTTATAATATTTAGAAAA+GGG | + | chr8.1:59641658-59641677 | MS.gene99551:intron | 5.0% |
!! | ATAATTTATTAATTTATGTA+TGG | + | chr8.1:59641939-59641958 | MS.gene99551:intron | 5.0% |
!! | TAATTTATAATATTTAGAAA+AGG | + | chr8.1:59641657-59641676 | MS.gene99551:intron | 5.0% |
!!! | ATTATTAATATTTACTTTTA+CGG | - | chr8.1:59642458-59642477 | None:intergenic | 5.0% |
!!! | TTTTTTTTTGTTTTTTTAAT+GGG | - | chr8.1:59642797-59642816 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTGTTTTTTTAA+TGG | - | chr8.1:59642798-59642817 | None:intergenic | 5.0% |
AGGAAGTCCATCCAGCCATT+TGG | - | chr8.1:59643620-59643639 | None:intergenic | 50.0% | |
CAGAGTCAGACAAACCCTCT+GGG | + | chr8.1:59641615-59641634 | MS.gene99551:intron | 50.0% | |
GAGGGTTTGTCTGACTCTGA+TGG | - | chr8.1:59641614-59641633 | None:intergenic | 50.0% | |
TCAGAGTCAGACAAACCCTC+TGG | + | chr8.1:59641614-59641633 | MS.gene99551:intron | 50.0% | |
CATGGCGAACACCCTAGTTG+AGG | + | chr8.1:59642747-59642766 | MS.gene99551:intron | 55.0% | |
! | CAACTAGGGTGTTCGCCATG+TGG | - | chr8.1:59642747-59642766 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 59640476 | 59643700 | 59640476 | ID=MS.gene99551 |
chr8.1 | mRNA | 59640476 | 59643700 | 59640476 | ID=MS.gene99551.t1;Parent=MS.gene99551 |
chr8.1 | exon | 59640476 | 59640662 | 59640476 | ID=MS.gene99551.t1.exon1;Parent=MS.gene99551.t1 |
chr8.1 | CDS | 59640476 | 59640662 | 59640476 | ID=cds.MS.gene99551.t1;Parent=MS.gene99551.t1 |
chr8.1 | exon | 59643417 | 59643700 | 59643417 | ID=MS.gene99551.t1.exon2;Parent=MS.gene99551.t1 |
chr8.1 | CDS | 59643417 | 59643700 | 59643417 | ID=cds.MS.gene99551.t1;Parent=MS.gene99551.t1 |
Gene Sequence |
Protein sequence |