AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99551


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99551.t1 MTR_8g045695 89.744 156 16 0 1 156 1 156 5.44e-103 291
MS.gene99551.t1 MTR_8g045665 89.103 156 17 0 1 156 1 156 1.74e-101 288
MS.gene99551.t1 MTR_8g045735 85.714 154 22 0 1 154 1 154 2.60e-97 277
MS.gene99551.t1 MTR_8g045640 83.974 156 25 0 1 156 1 156 1.24e-95 273
MS.gene99551.t1 MTR_8g045560 82.692 156 27 0 1 156 1 156 1.74e-94 270
MS.gene99551.t1 MTR_8g045520 74.522 157 39 1 1 156 1 157 1.99e-84 245
MS.gene99551.t1 MTR_8g045400 69.427 157 46 2 1 156 1 156 1.41e-77 227
MS.gene99551.t1 MTR_8g045490 67.516 157 49 2 1 156 1 156 1.13e-76 225
MS.gene99551.t1 MTR_8g045570 68.421 152 47 1 1 151 1 152 1.42e-75 222
MS.gene99551.t1 MTR_8g045555 65.132 152 52 1 1 151 1 152 1.20e-72 215
MS.gene99551.t1 MTR_8g045300 62.821 156 57 1 1 155 1 156 1.24e-71 213
MS.gene99551.t1 MTR_1g030810 43.137 153 83 3 1 150 1 152 3.55e-39 130
MS.gene99551.t1 MTR_1g030820 38.562 153 90 3 1 150 1 152 2.25e-37 125
MS.gene99551.t1 MTR_1g030840 38.462 156 87 5 1 148 1 155 9.57e-29 103
MS.gene99551.t1 MTR_8g012550 33.333 150 96 4 6 153 8 155 5.33e-27 99.4
MS.gene99551.t1 MTR_1g031640 39.189 148 80 6 7 151 7 147 2.16e-22 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99551.t1 AT1G70890 37.255 153 92 4 3 152 7 158 3.38e-25 94.7
MS.gene99551.t1 AT5G28010 34.641 153 96 4 3 152 15 166 3.56e-25 95.1
MS.gene99551.t1 AT5G28010 34.641 153 96 4 3 152 15 166 3.56e-25 95.1
MS.gene99551.t1 AT1G70840 34.641 153 96 4 3 152 20 171 4.90e-24 92.4
MS.gene99551.t1 AT1G70830 35.294 153 95 4 3 152 22 173 4.45e-23 89.7
MS.gene99551.t1 AT1G70830 35.065 154 96 4 3 153 22 174 6.92e-23 90.1
MS.gene99551.t1 AT1G70830 35.948 153 94 4 3 152 137 288 1.70e-22 90.9
MS.gene99551.t1 AT1G70830 32.990 97 63 2 59 153 31 127 1.38e-11 61.2
MS.gene99551.t1 AT1G70830 35.065 154 96 4 3 153 22 174 4.43e-22 89.0
MS.gene99551.t1 AT1G70830 35.948 153 94 4 3 152 184 335 6.17e-22 90.1
MS.gene99551.t1 AT1G70830 35.065 154 96 4 3 153 22 174 8.84e-22 89.7
MS.gene99551.t1 AT5G28000 33.333 153 98 4 3 152 13 164 9.99e-22 86.3
MS.gene99551.t1 AT1G70850 36.364 143 87 4 13 152 175 316 4.90e-21 87.4
MS.gene99551.t1 AT1G70850 34.000 150 95 4 3 149 9 157 1.58e-20 85.9
MS.gene99551.t1 AT1G70850 36.364 143 87 4 13 152 175 316 4.90e-21 87.4
MS.gene99551.t1 AT1G70850 34.000 150 95 4 3 149 9 157 1.58e-20 85.9
MS.gene99551.t1 AT1G70850 34.000 150 95 4 3 149 9 157 5.97e-21 85.9
MS.gene99551.t1 AT4G23670 33.117 154 97 5 1 151 1 151 1.61e-19 80.1
MS.gene99551.t1 AT1G70870 42.268 97 54 2 55 150 43 138 3.16e-19 79.0
MS.gene99551.t1 AT1G14930 28.662 157 108 4 1 155 1 155 2.33e-18 77.0
MS.gene99551.t1 AT2G01520 28.758 153 105 4 1 151 1 151 1.21e-17 75.1
MS.gene99551.t1 AT1G70880 31.373 153 101 4 3 152 8 159 2.17e-17 74.7
MS.gene99551.t1 AT1G24020 32.258 155 96 4 1 150 1 151 1.16e-16 72.8
MS.gene99551.t1 AT1G24020 32.258 155 96 4 1 150 1 151 1.16e-16 72.8
MS.gene99551.t1 AT1G23130 28.188 149 104 3 3 149 10 157 1.66e-16 72.4
MS.gene99551.t1 AT1G23120 29.787 141 93 4 10 149 10 145 1.91e-16 72.0
MS.gene99551.t1 AT1G23120 29.787 141 93 4 10 149 60 195 4.47e-16 72.0
MS.gene99551.t1 AT1G14940 27.389 157 110 4 1 155 1 155 1.12e-15 70.1
MS.gene99551.t1 AT2G01530 28.105 153 106 4 1 151 1 151 1.54e-15 69.7
MS.gene99551.t1 AT1G35260 30.556 144 95 4 9 149 8 149 2.33e-15 69.3
MS.gene99551.t1 AT4G14060 27.451 153 107 4 1 151 1 151 4.45e-15 68.6
MS.gene99551.t1 AT4G23680 28.758 153 103 5 1 150 1 150 7.24e-15 67.8
MS.gene99551.t1 AT1G14950 26.752 157 111 4 1 155 1 155 1.06e-14 67.8
MS.gene99551.t1 AT1G30990 29.139 151 102 5 1 149 1 148 1.76e-14 67.0
MS.gene99551.t1 AT1G35310 30.935 139 92 4 13 149 12 148 4.11e-14 65.9
MS.gene99551.t1 AT3G26460 27.451 153 108 3 1 151 1 152 3.43e-13 63.5
MS.gene99551.t1 AT1G14960 25.161 155 112 4 1 153 1 153 3.25e-12 60.8
MS.gene99551.t1 AT3G26450 24.183 153 113 3 1 151 1 152 1.40e-11 59.3

Find 35 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTACTTACAAGCTGTT+TGG 0.370047 8.1:+59643473 MS.gene99551:CDS
CACAAACTTTGTGCACTTCG+TGG 0.405990 8.1:-59640559 None:intergenic
ATGGAAGTTCTGCTGTTAGA+TGG 0.407851 8.1:+59643555 MS.gene99551:CDS
AGGAAGTCCATCCAGCCATT+TGG 0.420702 8.1:-59643617 None:intergenic
TGGAGATATTGAAAACTATA+AGG 0.439418 8.1:+59643496 MS.gene99551:CDS
ATCTTCACCTTCATGAAGCT+TGG 0.441586 8.1:-59640597 None:intergenic
GGGAAACTTATCACTGAACT+TGG 0.445682 8.1:+59640488 MS.gene99551:CDS
AAACACTGGACTTATGTCAT+AGG 0.470664 8.1:+59640641 MS.gene99551:CDS
AGGTGAAGATTGGCATCAAA+AGG 0.482747 8.1:+59640610 MS.gene99551:CDS
ATTACTTACAAGCTGTTTGG+TGG 0.484942 8.1:+59643476 MS.gene99551:CDS
TTTCCAAATATGGTGCTCGC+TGG 0.484997 8.1:+59640467 None:intergenic
AGCTTCATGAAGGTGAAGAT+TGG 0.494334 8.1:+59640600 MS.gene99551:CDS
TTCCAAATATGGTGCTCGCT+GGG 0.503897 8.1:+59640468 None:intergenic
TCATCTTGTCAAAGGGGAAA+AGG 0.504175 8.1:+59643667 MS.gene99551:CDS
AAGAGCACTAGAGATATTGA+TGG 0.505384 8.1:+59643644 MS.gene99551:CDS
TTGATGGTCATCTTGTCAAA+GGG 0.506740 8.1:+59643660 MS.gene99551:CDS
AGATTGGCATCAAAAGGATT+CGG 0.511486 8.1:+59640616 MS.gene99551:CDS
ATTGATGGTCATCTTGTCAA+AGG 0.543582 8.1:+59643659 MS.gene99551:CDS
GAACTTGGGATCAAATCACC+TGG 0.553911 8.1:+59640503 MS.gene99551:CDS
TATCTCTAGTGCTCTTGCTA+AGG 0.564297 8.1:-59643637 None:intergenic
ATGTTGATACTCCAAATGGC+TGG 0.578150 8.1:+59643606 MS.gene99551:CDS
GAAGTGCTTAACAAGGCTGA+TGG 0.580204 8.1:+59643536 MS.gene99551:CDS
AACTTGGGATCAAATCACCT+GGG 0.581574 8.1:+59640504 MS.gene99551:CDS
CATCATGCCAAGCTTCATGA+AGG 0.583004 8.1:+59640590 MS.gene99551:CDS
TGATACTCCAAATGGCTGGA+TGG 0.587093 8.1:+59643610 MS.gene99551:CDS
AAAAGGATTCGGTTAAACAC+TGG 0.591334 8.1:+59640627 MS.gene99551:CDS
GAGGATGTTGATACTCCAAA+TGG 0.593330 8.1:+59643602 MS.gene99551:CDS
GGTACACACAAGCAATAAGA+AGG 0.608553 8.1:+59643424 MS.gene99551:CDS
AGTTTGAAGAACTTCTCCCC+AGG 0.610513 8.1:-59640521 None:intergenic
GGAAACTTATCACTGAACTT+GGG 0.624297 8.1:+59640489 MS.gene99551:CDS
CTACATAACAACAGATGGTG+AGG 0.642457 8.1:+59643403 MS.gene99551:intron
CATCTTAGAAGTGCTTAACA+AGG 0.644958 8.1:+59643529 MS.gene99551:CDS
TGATGGTCATCTTGTCAAAG+GGG 0.652198 8.1:+59643661 MS.gene99551:CDS
TGATTATGAGAAGAACAATG+AGG 0.694185 8.1:+59643583 MS.gene99551:CDS
ACTTGGGATCAAATCACCTG+GGG 0.705917 8.1:+59640505 MS.gene99551:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTATAATATTTAAAAA+GGG + chr8.1:59640779-59640798 MS.gene99551:intron 0.0%
!! TTAATTTATAATATTTAAAA+AGG + chr8.1:59640778-59640797 MS.gene99551:intron 0.0%
!! ATAAAAAAAAGATATTGATA+AGG - chr8.1:59642998-59643017 None:intergenic 10.0%
!! ATTATAAATTAAGTGATTAT+AGG - chr8.1:59641648-59641667 None:intergenic 10.0%
!! AAAAAACATCGTTATTAATA+TGG - chr8.1:59641853-59641872 None:intergenic 15.0%
!! GCTAATATAATATTGTAAAT+AGG + chr8.1:59640966-59640985 MS.gene99551:intron 15.0%
!! GCTTTACTTAAAATAATAAT+AGG + chr8.1:59641701-59641720 MS.gene99551:intron 15.0%
!! TCGTTTATTTATTAAATGTA+TGG - chr8.1:59642580-59642599 None:intergenic 15.0%
!!! AAATTGATTTTGAAAGAAAA+TGG + chr8.1:59641354-59641373 MS.gene99551:intron 15.0%
!!! ATAGAAATTCATATTTTTCA+AGG - chr8.1:59642004-59642023 None:intergenic 15.0%
!!! CGTATTTAATATTTTTTTAG+AGG + chr8.1:59643343-59643362 MS.gene99551:intron 15.0%
!!! TGTATATGGTTTTATTTTTA+AGG - chr8.1:59643065-59643084 None:intergenic 15.0%
!!! TTAAAAAAAACACTTTCTTT+TGG - chr8.1:59641395-59641414 None:intergenic 15.0%
!!! TTAAATAGTCTTATACATTA+GGG - chr8.1:59643031-59643050 None:intergenic 15.0%
!!! TTTAAATAGTCTTATACATT+AGG - chr8.1:59643032-59643051 None:intergenic 15.0%
!!! TTTTTTTTTAACTTGTTTAG+TGG - chr8.1:59642027-59642046 None:intergenic 15.0%
!! AAATTAGTTGTACTAGAAAT+GGG - chr8.1:59643124-59643143 None:intergenic 20.0%
!! ATAATATTTAAAAAGGGAAG+AGG + chr8.1:59640785-59640804 MS.gene99551:intron 20.0%
!! ATTAATTTATGTATGGTCTA+GGG + chr8.1:59641946-59641965 MS.gene99551:intron 20.0%
!! TATTAATTTATGTATGGTCT+AGG + chr8.1:59641945-59641964 MS.gene99551:intron 20.0%
!! TGCATATAAGAATATGTATA+TGG - chr8.1:59643079-59643098 None:intergenic 20.0%
!! TTAAACATAACTCTTCATTA+TGG - chr8.1:59641040-59641059 None:intergenic 20.0%
!! TTCGAAATAAAAATCACATA+CGG - chr8.1:59642691-59642710 None:intergenic 20.0%
!!! AACTAGTTTATTTTCTAGAT+AGG - chr8.1:59641176-59641195 None:intergenic 20.0%
!!! ATTGTGATTTTATAACTTCA+AGG - chr8.1:59642879-59642898 None:intergenic 20.0%
!!! CAAAAATATTTGGTTTTTTG+CGG - chr8.1:59642357-59642376 None:intergenic 20.0%
!!! TAATATTTACTTTTACGGTT+TGG - chr8.1:59642453-59642472 None:intergenic 20.0%
!!! TATTAAATACGTTTTCTCAA+AGG - chr8.1:59643334-59643353 None:intergenic 20.0%
!!! TGACTATTCTAAAAATTAGT+CGG - chr8.1:59642652-59642671 None:intergenic 20.0%
! AAAATTACTTACAAGCTGTT+TGG + chr8.1:59643473-59643492 MS.gene99551:CDS 25.0%
! CAAACACATCCAAAAATATT+TGG - chr8.1:59642367-59642386 None:intergenic 25.0%
! CAAATTAGTTGTACTAGAAA+TGG - chr8.1:59643125-59643144 None:intergenic 25.0%
! TACATATGTAAAACGAATTG+AGG - chr8.1:59640876-59640895 None:intergenic 25.0%
! TGGAGATATTGAAAACTATA+AGG + chr8.1:59643496-59643515 MS.gene99551:CDS 25.0%
! TTAACATTCTTACTTCTTGT+TGG - chr8.1:59641776-59641795 None:intergenic 25.0%
! TTTGCAGTATTATTTCAGAT+CGG - chr8.1:59642314-59642333 None:intergenic 25.0%
!! ACTTTTGTAAAAAGTTAACG+AGG + chr8.1:59643271-59643290 MS.gene99551:intron 25.0%
!! CGCAAAAAACCAAATATTTT+TGG + chr8.1:59642355-59642374 MS.gene99551:intron 25.0%
!! TTTTGCGGTTTTCAATTTTT+TGG - chr8.1:59642342-59642361 None:intergenic 25.0%
!!! CAAATATTTTTGGATGTGTT+TGG + chr8.1:59642365-59642384 MS.gene99551:intron 25.0%
!!! GATACTTCAATGTTTTGAAT+TGG + chr8.1:59642061-59642080 MS.gene99551:intron 25.0%
!!! GTTTTGAATTGGATATGATT+GGG + chr8.1:59642072-59642091 MS.gene99551:intron 25.0%
!!! TGTTTTGAATTGGATATGAT+TGG + chr8.1:59642071-59642090 MS.gene99551:intron 25.0%
!!! TTCTTTTGGACCATTTTTTT+GGG - chr8.1:59641381-59641400 None:intergenic 25.0%
!!! TTTCTTTTGGACCATTTTTT+TGG - chr8.1:59641382-59641401 None:intergenic 25.0%
AAAACGTAAACTCGTAAACA+CGG + chr8.1:59641413-59641432 MS.gene99551:intron 30.0%
AAACTATTCAACCTCAACTA+GGG - chr8.1:59642761-59642780 None:intergenic 30.0%
AACATAACTCTTCATTATGG+TGG - chr8.1:59641037-59641056 None:intergenic 30.0%
AGAAAATGGACCCAAAAAAA+TGG + chr8.1:59641368-59641387 MS.gene99551:intron 30.0%
ATTGAAAACACTTTATCGTC+TGG - chr8.1:59641284-59641303 None:intergenic 30.0%
GGAGACGTATATAATTTACA+AGG + chr8.1:59641679-59641698 MS.gene99551:intron 30.0%
TGATTATGAGAAGAACAATG+AGG + chr8.1:59643583-59643602 MS.gene99551:CDS 30.0%
TGTACTAGAAATGGGTATAT+TGG - chr8.1:59643116-59643135 None:intergenic 30.0%
TTAATGTCGAAGTAAGTTCA+AGG - chr8.1:59641325-59641344 None:intergenic 30.0%
TTCAAGGTGAATAAGTAAGT+GGG - chr8.1:59641988-59642007 None:intergenic 30.0%
TTTCAAGGTGAATAAGTAAG+TGG - chr8.1:59641989-59642008 None:intergenic 30.0%
TTTGTAAAAACCGTTAGGAT+CGG + chr8.1:59642395-59642414 MS.gene99551:intron 30.0%
! CTAGTACAACTAATTTGTCT+TGG + chr8.1:59643128-59643147 MS.gene99551:intron 30.0%
! GCAAGTAAAAAGAAAAGTGT+TGG - chr8.1:59643237-59643256 None:intergenic 30.0%
!! GTACTCTAAAATTTCACTTC+TGG + chr8.1:59642209-59642228 MS.gene99551:intron 30.0%
!! GTTGTTTTGTAAAAACCGTT+AGG + chr8.1:59642390-59642409 MS.gene99551:intron 30.0%
!!! AACTTGTGAACTTGCTTTTT+TGG - chr8.1:59641135-59641154 None:intergenic 30.0%
!!! ACTCGTTTTTTTGGTGAAAT+CGG - chr8.1:59641492-59641511 None:intergenic 30.0%
!!! GCTTTTTTGGATGGTTTTTT+TGG - chr8.1:59641122-59641141 None:intergenic 30.0%
!!! TTTACTTTTACGGTTTGGTT+CGG - chr8.1:59642448-59642467 None:intergenic 30.0%
!!! TTTTGGATGGTTTTTTTGGA+TGG - chr8.1:59641118-59641137 None:intergenic 30.0%
AAACACTGGACTTATGTCAT+AGG + chr8.1:59640641-59640660 MS.gene99551:CDS 35.0%
AAATCACATACGGATCAGTT+CGG - chr8.1:59642681-59642700 None:intergenic 35.0%
AATAAGTAAGTGGGGTGTAT+GGG - chr8.1:59641979-59641998 None:intergenic 35.0%
ACATTCTTACTTCTTGTTGG+TGG - chr8.1:59641773-59641792 None:intergenic 35.0%
AGATTGGCATCAAAAGGATT+CGG + chr8.1:59640616-59640635 MS.gene99551:CDS 35.0%
AGTTAACACGTGTTAAACTC+GGG - chr8.1:59641448-59641467 None:intergenic 35.0%
ATTACTTACAAGCTGTTTGG+TGG + chr8.1:59643476-59643495 MS.gene99551:CDS 35.0%
CACTAGATAAGATCACGTTA+TGG + chr8.1:59640816-59640835 MS.gene99551:intron 35.0%
CGAGTTGTAAAACCTTACTT+GGG - chr8.1:59640845-59640864 None:intergenic 35.0%
GAAACTATTCAACCTCAACT+AGG - chr8.1:59642762-59642781 None:intergenic 35.0%
GAGTTAACACGTGTTAAACT+CGG - chr8.1:59641449-59641468 None:intergenic 35.0%
GAGTTTAACACGTGTTAACT+CGG + chr8.1:59641448-59641467 MS.gene99551:intron 35.0%
GAGTTTAGGTGTATCTTGAA+GGG + chr8.1:59642094-59642113 MS.gene99551:intron 35.0%
GGAAACTTATCACTGAACTT+GGG + chr8.1:59640489-59640508 MS.gene99551:CDS 35.0%
GGAGTAGAATTTGATGAAGT+GGG - chr8.1:59641263-59641282 None:intergenic 35.0%
GTAAGTTCAAGGCATGTATT+TGG - chr8.1:59641314-59641333 None:intergenic 35.0%
TCAAAAACGTGTTAACTCGA+AGG - chr8.1:59641518-59641537 None:intergenic 35.0%
TCAAGGTGAATAAGTAAGTG+GGG - chr8.1:59641987-59642006 None:intergenic 35.0%
TGGAGTAGAATTTGATGAAG+TGG - chr8.1:59641264-59641283 None:intergenic 35.0%
TTGGATATGATTGGGAGTTT+AGG + chr8.1:59642080-59642099 MS.gene99551:intron 35.0%
TTTGATGAAGTGGGAGATTA+AGG - chr8.1:59641254-59641273 None:intergenic 35.0%
! AAAAGGATTCGGTTAAACAC+TGG + chr8.1:59640627-59640646 MS.gene99551:CDS 35.0%
! ACGAGTTAACACTTGATTTG+TGG + chr8.1:59641567-59641586 MS.gene99551:intron 35.0%
! ATTGATGGTCATCTTGTCAA+AGG + chr8.1:59643659-59643678 MS.gene99551:CDS 35.0%
! TCGAGTTGTAAAACCTTACT+TGG - chr8.1:59640846-59640865 None:intergenic 35.0%
! TGAGTTTAACTCAGTTGGTA+GGG + chr8.1:59641909-59641928 MS.gene99551:intron 35.0%
! TTCAACATGGGTTGAGTTTA+GGG + chr8.1:59642273-59642292 MS.gene99551:intron 35.0%
! TTGATGGTCATCTTGTCAAA+GGG + chr8.1:59643660-59643679 MS.gene99551:CDS 35.0%
!! AAGAGCACTAGAGATATTGA+TGG + chr8.1:59643644-59643663 MS.gene99551:CDS 35.0%
!! ATTATAGGTTCTAAACCCAG+AGG - chr8.1:59641633-59641652 None:intergenic 35.0%
!! CATCTTAGAAGTGCTTAACA+AGG + chr8.1:59643529-59643548 MS.gene99551:CDS 35.0%
!! GTACTCTAAAATTTCACTGC+TGG + chr8.1:59642127-59642146 MS.gene99551:intron 35.0%
!! TTATAGGTTCTAAACCCAGA+GGG - chr8.1:59641632-59641651 None:intergenic 35.0%
!!! CGAAGGTAAACTCGTTTTTT+TGG - chr8.1:59641501-59641520 None:intergenic 35.0%
!!! TGTGAACTTGCTTTTTTGGA+TGG - chr8.1:59641131-59641150 None:intergenic 35.0%
AACTTGGGATCAAATCACCT+GGG + chr8.1:59640504-59640523 MS.gene99551:CDS 40.0%
AGCTTCATGAAGGTGAAGAT+TGG + chr8.1:59640600-59640619 MS.gene99551:CDS 40.0%
AGGTGAAGATTGGCATCAAA+AGG + chr8.1:59640610-59640629 MS.gene99551:CDS 40.0%
ATAAGTAAGTGGGGTGTATG+GGG - chr8.1:59641978-59641997 None:intergenic 40.0%
ATCTTCACCTTCATGAAGCT+TGG - chr8.1:59640600-59640619 None:intergenic 40.0%
ATGGAAGTTCTGCTGTTAGA+TGG + chr8.1:59643555-59643574 MS.gene99551:CDS 40.0%
ATGTTGATACTCCAAATGGC+TGG + chr8.1:59643606-59643625 MS.gene99551:CDS 40.0%
CACCATCTGTTGTTATGTAG+AGG - chr8.1:59643403-59643422 None:intergenic 40.0%
CTACATAACAACAGATGGTG+AGG + chr8.1:59643403-59643422 MS.gene99551:intron 40.0%
CTCTGTGAGTTTAACTCAGT+TGG + chr8.1:59641904-59641923 MS.gene99551:intron 40.0%
CTCTTGTCTGAGTTCAACAT+GGG + chr8.1:59642261-59642280 MS.gene99551:intron 40.0%
GAAATTCGATCCGATCCTAA+CGG - chr8.1:59642408-59642427 None:intergenic 40.0%
GAATAAGTAAGTGGGGTGTA+TGG - chr8.1:59641980-59641999 None:intergenic 40.0%
GAGGATGTTGATACTCCAAA+TGG + chr8.1:59643602-59643621 MS.gene99551:CDS 40.0%
GGAGTTTAGGTGTATCTTGA+AGG + chr8.1:59642093-59642112 MS.gene99551:intron 40.0%
GGGAAACTTATCACTGAACT+TGG + chr8.1:59640488-59640507 MS.gene99551:CDS 40.0%
GGTACACACAAGCAATAAGA+AGG + chr8.1:59643424-59643443 MS.gene99551:CDS 40.0%
GTGAGTTTAACTCAGTTGGT+AGG + chr8.1:59641908-59641927 MS.gene99551:intron 40.0%
TATCTCTAGTGCTCTTGCTA+AGG - chr8.1:59643640-59643659 None:intergenic 40.0%
TCATCTTGTCAAAGGGGAAA+AGG + chr8.1:59643667-59643686 MS.gene99551:CDS 40.0%
TGATGGTCATCTTGTCAAAG+GGG + chr8.1:59643661-59643680 MS.gene99551:CDS 40.0%
TGCCTCTACATAACAACAGA+TGG + chr8.1:59643398-59643417 MS.gene99551:intron 40.0%
! CAAAACCGATTCAAACCACA+TGG + chr8.1:59642729-59642748 MS.gene99551:intron 40.0%
! GTTCAACATGGGTTGAGTTT+AGG + chr8.1:59642272-59642291 MS.gene99551:intron 40.0%
!! AAAGTGTTGGAGCAACAAAG+TGG - chr8.1:59643224-59643243 None:intergenic 40.0%
!! CTGCTGGTGATGTTTTGAAT+TGG + chr8.1:59642143-59642162 MS.gene99551:intron 40.0%
!! GACTCTGATGGGTTAAACTT+GGG - chr8.1:59641602-59641621 None:intergenic 40.0%
!! TGACTCTGATGGGTTAAACT+TGG - chr8.1:59641603-59641622 None:intergenic 40.0%
ACATACGGATCAGTTCGGTT+TGG - chr8.1:59642676-59642695 None:intergenic 45.0%
ACGTTATGGAGTCCCAAGTA+AGG + chr8.1:59640830-59640849 MS.gene99551:intron 45.0%
ACTTGGGATCAAATCACCTG+GGG + chr8.1:59640505-59640524 MS.gene99551:CDS 45.0%
AGGGTTTGTCTGACTCTGAT+GGG - chr8.1:59641613-59641632 None:intergenic 45.0%
AGTTTGAAGAACTTCTCCCC+AGG - chr8.1:59640524-59640543 None:intergenic 45.0%
CACAAACTTTGTGCACTTCG+TGG - chr8.1:59640562-59640581 None:intergenic 45.0%
CATCATGCCAAGCTTCATGA+AGG + chr8.1:59640590-59640609 MS.gene99551:CDS 45.0%
GAACTTGGGATCAAATCACC+TGG + chr8.1:59640503-59640522 MS.gene99551:CDS 45.0%
GCTCTTGTCTGAGTTCAACA+TGG + chr8.1:59642260-59642279 MS.gene99551:intron 45.0%
GTGTCAAGACTCAAGATGTG+AGG - chr8.1:59642915-59642934 None:intergenic 45.0%
GTTCGCCATGTGGTTTGAAT+CGG - chr8.1:59642737-59642756 None:intergenic 45.0%
TGATACTCCAAATGGCTGGA+TGG + chr8.1:59643610-59643629 MS.gene99551:CDS 45.0%
! GAAGTGCTTAACAAGGCTGA+TGG + chr8.1:59643536-59643555 MS.gene99551:CDS 45.0%
!! AATTTATAATATTTAGAAAA+GGG + chr8.1:59641658-59641677 MS.gene99551:intron 5.0%
!! ATAATTTATTAATTTATGTA+TGG + chr8.1:59641939-59641958 MS.gene99551:intron 5.0%
!! TAATTTATAATATTTAGAAA+AGG + chr8.1:59641657-59641676 MS.gene99551:intron 5.0%
!!! ATTATTAATATTTACTTTTA+CGG - chr8.1:59642458-59642477 None:intergenic 5.0%
!!! TTTTTTTTTGTTTTTTTAAT+GGG - chr8.1:59642797-59642816 None:intergenic 5.0%
!!! TTTTTTTTTTGTTTTTTTAA+TGG - chr8.1:59642798-59642817 None:intergenic 5.0%
AGGAAGTCCATCCAGCCATT+TGG - chr8.1:59643620-59643639 None:intergenic 50.0%
CAGAGTCAGACAAACCCTCT+GGG + chr8.1:59641615-59641634 MS.gene99551:intron 50.0%
GAGGGTTTGTCTGACTCTGA+TGG - chr8.1:59641614-59641633 None:intergenic 50.0%
TCAGAGTCAGACAAACCCTC+TGG + chr8.1:59641614-59641633 MS.gene99551:intron 50.0%
CATGGCGAACACCCTAGTTG+AGG + chr8.1:59642747-59642766 MS.gene99551:intron 55.0%
! CAACTAGGGTGTTCGCCATG+TGG - chr8.1:59642747-59642766 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 59640476 59643700 59640476 ID=MS.gene99551
chr8.1 mRNA 59640476 59643700 59640476 ID=MS.gene99551.t1;Parent=MS.gene99551
chr8.1 exon 59640476 59640662 59640476 ID=MS.gene99551.t1.exon1;Parent=MS.gene99551.t1
chr8.1 CDS 59640476 59640662 59640476 ID=cds.MS.gene99551.t1;Parent=MS.gene99551.t1
chr8.1 exon 59643417 59643700 59643417 ID=MS.gene99551.t1.exon2;Parent=MS.gene99551.t1
chr8.1 CDS 59643417 59643700 59643417 ID=cds.MS.gene99551.t1;Parent=MS.gene99551.t1
Gene Sequence

>MS.gene99551

ATGGTGCTCGCTGGGAAACTTATCACTGAACTTGGGATCAAATCACCTGGGGAGAAGTTCTTCAAACTATTTTCATCAGAACTCCACGAAGTGCACAAAGTTTGTGAAAGAGTTCATCATGCCAAGCTTCATGAAGGTGAAGATTGGCATCAAAAGGATTCGGTTAAACACTGGACTTATGTCATAGGTAATAATAATTGTGTTTCTAATTCAATTGATCTGATAACTAGATTATCAGCTTATTTCATTTGAAAAAGTTTTCATCTTTAAATTTTTTATTTTTAATATTTTATAATGACGACTTAATTTATAATATTTAAAAAGGGAAGAGGTATAAAGTCACTAGATAAGATCACGTTATGGAGTCCCAAGTAAGGTTTTACAACTCGAGAGTTTACCTCAATTCGTTTTACATATGTAAAATCGATCGAATCGTAAACTCGATAAAATTAAAATTATATAAAATTTATTATATACATGACATGTGTAAGCTAATATAATATTGTAAATAGGTCTAGTGCAAAATATGACTGTATTATGAAGACAAAGTATACATAACCACCATAATGAAGAGTTATGTTTAACTTAACATCAAAATACAAAATTAACTTGCAAAATCACAAGTTTTATAAGACTAAACCATCCAAAAAAACCATCCAAAAAAGCAAGTTCACAAGTTTCTAAAGTTTTTAATATACCTATCTAGAAAATAAACTAGTTAATTTCTTCAAAAGTTGAATCTTTCTAAAGTTTCATAACATCATTATTATCAGTGCCTTAATCTCCCACTTCATCAAATTCTACTCCAGACGATAAAGTGTTTTCAATATTAGAACCAAATACATGCCTTGAACTTACTTCGACATTAATTTCAGTAAAAATTGATTTTGAAAGAAAATGGACCCAAAAAAATGGTCCAAAAGAAAGTGTTTTTTTTAAAACGTAAACTCGTAAACACGGTCAAGTTTACCCGAGTTTAACACGTGTTAACTCGGTCAAACACGTCAAACATTCCGATTTCACCAAAAAAACGAGTTTACCTTCGAGTTAACACGTTTTTGACACTTAAAAACGTAAACTCGAATGAGTCTACGAGTTAACACTTGATTTGTGGAAAACTGATCCCAAGTTTAACCCATCAGAGTCAGACAAACCCTCTGGGTTTAGAACCTATAATCACTTAATTTATAATATTTAGAAAAGGGAGACGTATATAATTTACAAGGCTTTACTTAAAATAATAATAGGACATGCTTGTTCAATAAAATTTGATGATTTAGAAGAAGAAAAAGATCCACCAACAAGAAGTAAGAATGTTAAATATTTGAAATGCGCAAAATGAAATAAAAAAATAGAATAAGAAACACTATTACGCCATATTAATAACGATGTTTTTTATTCTTAAGAAGTTATTAATAACGACGATAACTCTGTGAGTTTAACTCAGTTGGTAGGGACAATACATAATTTATTAATTTATGTATGGTCTAGGGTTCGAACCCCATACACCCCACTTACTTATTCACCTTGAAAAATATGAATTTCTATCCACTAAACAAGTTAAAAAAAAATAATTAATAACGATGATACTTCAATGTTTTGAATTGGATATGATTGGGAGTTTAGGTGTATCTTGAAGGGTTGTCTTGACGTACTCTAAAATTTCACTGCTGGTGATGTTTTGAATTGGATATGATTGGGAGTTTAGGTGTATCTTGAAGGGTTGTCTTGACGTACTCTAAAATTTCACTTCTGGTGCAATAAATTTGCAATTTAATTTCATTGCTCTTGTCTGAGTTCAACATGGGTTGAGTTTAGGGATGTTCAAATTCAAACCGATCTGAAATAATACTGCAAATCGATCCAAAAAATTGAAAACCGCAAAAAACCAAATATTTTTGGATGTGTTTGGATGTTGTTTTGTAAAAACCGTTAGGATCGGATCGAATTTCTTATCACTTGTTTACAACCGAACCAAACCGTAAAAGTAAATATTAATAATAATTTATTGTTTTATTAATATTATAAATTGCATTATTATGTTACTTGTTGATTTTTAATCTTATATATTGCACTAACTTAATCTAGTACTATTATTACTCCATACATTTAATAAATAAACGACAATTTTCATACTGTATAATTTTAATTTTTTAATATATTTTACGTCAAACCGACTAATTTTTAGAATAGTCATCCAAACCGAACTGATCCGTATGTGATTTTTATTTCGAATCGAATAACATCTTATCTCAAAACCGATTCAAACCACATGGCGAACACCCTAGTTGAGGTTGAATAGTTTCAATATATTTTTACCCATTAAAAAAACAAAAAAAAAAAAAACAGTGACAAAAATAGTCATTTTACAACTGTATTAAGTGAGATTTAAACTTTGTTCCTTGAAGTTATAAAATCACAATATTATCTTGATAACCTCACATCTTGAGTCTTGACACAAAAATATGCATTAATATAATTGAAAATAATAAAATAATTTATTTTTTAAAATAATGAATCCTTATCAATATCTTTTTTTTATACTTTTTCGTCCCTAATGTATAAGACTATTTAAAAAAAAATTGTCCTTAAAAATAAAACCATATACATATTCTTATATGCATTTATTACTTTTTTCCAATATACCCATTTCTAGTACAACTAATTTGTCTTGGTATGTAAAAAGTTAACATTAAATATATATTTAATTAAAAGTAATCTAGTAATAGTCACACACATTTGAAACCACTTTGTTGCTCCAACACTTTTCTTTTTACTTGCAATCTTTATAAAGTACTTTTGTAAAAAGTTAACGAGGTAGTAATTTTTTTTGTGAAACTATTATTTTTTATATTCCTTTGAGAAAACGTATTTAATATTTTTTTAGAGGTAAAAACGTATTTTATTGCTATTGATATTAATTGCCTCTACATAACAACAGATGGTGAGGTACACACAAGCAATAAGAAGGTTGAAGAAGTTGATGAGCAAAACAAAAAAATTACTTACAAGCTGTTTGGTGGAGATATTGAAAACTATAAGGTCTTTAAGCTCATCTTAGAAGTGCTTAACAAGGCTGATGGAAGTTCTGCTGTTAGATGGACTATTGATTATGAGAAGAACAATGAGGATGTTGATACTCCAAATGGCTGGATGGACTTCCTTAGCAAGAGCACTAGAGATATTGATGGTCATCTTGTCAAAGGGGAAAAGGTAGCTCTATAA

Protein sequence

>MS.gene99551.t1

MVLAGKLITELGIKSPGEKFFKLFSSELHEVHKVCERVHHAKLHEGEDWHQKDSVKHWTYVIDGEVHTSNKKVEEVDEQNKKITYKLFGGDIENYKVFKLILEVLNKADGSSAVRWTIDYEKNNEDVDTPNGWMDFLSKSTRDIDGHLVKGEKVAL