AlfalfaGEDB | MS.gene96276

M. sativa cultivar XinJiangDaYe / MS.gene96276

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96276.t1	XP_003593873.1	98.1	429	6	1	1	427	81	509	2.30E-191	678.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96276.t1	F4IHY7	63.9	429	127	3	1	427	91	493	7.8e-140	498.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96276.t1	G7IP39	98.1	429	6	1	1	427	81	509	1.6e-191	678.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene96276	0.850186	2.00E-60	-1.69E-46
MS.gene049151	MS.gene96276	0.834397	3.07E-56	-1.69E-46
MS.gene049153	MS.gene96276	0.854365	1.29E-61	-1.69E-46
MS.gene049260	MS.gene96276	0.841882	3.63E-58	-1.69E-46
MS.gene049284	MS.gene96276	0.821106	4.82E-53	-1.69E-46
MS.gene049297	MS.gene96276	0.854224	1.42E-61	-1.69E-46
MS.gene04933	MS.gene96276	0.804814	1.80E-49	-1.69E-46
MS.gene049346	MS.gene96276	0.840273	9.60E-58	-1.69E-46
MS.gene049351	MS.gene96276	0.886694	2.74E-72	-1.69E-46
MS.gene049356	MS.gene96276	0.8055	1.30E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96276.t1	MTR_2g018740	97.448	431	5	2	1	427	81	509	0.0	841

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96276.t1	AT2G34640	67.366	429	112	5	1	427	91	493	0.0	538

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Find 127 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAACCTCCTTCAGAAA+AGG	0.478180	2.2:-65746648	None:intergenic
AAACATTTCAATTAGTTGAG+TGG	0.546235	2.2:-65745095	None:intergenic
AAACTAACCGTTTCAGTGTC+AGG	0.440574	2.2:-65744211	None:intergenic
AAACTGCTCTTTACCGAGCC+AGG	0.506007	2.2:+65744579	MS.gene96276:CDS
AAAGGCAGCATATTTGGTGT+TGG	0.523847	2.2:-65746630	None:intergenic
AACAATGGTCCAGATGGCAA+AGG	0.635970	2.2:+65744182	MS.gene96276:CDS
AACGATTCTCCCATCGGAGT+AGG	0.619729	2.2:-65743824	None:intergenic
AACTCCTCAGAATCTTCTTG+AGG	0.576814	2.2:-65743986	None:intergenic
AACTCTTCCTCCTACTACCA+GGG	0.587983	2.2:-65743871	None:intergenic
AAGGAACTGTTGAGCAAGTC+AGG	0.349440	2.2:+65743789	MS.gene96276:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATATCATGTGCTCTT+GGG	-	chr2.2:65747459-65747478	None:intergenic	30.0%
AAAATAACCTCCTTCAGAAA+AGG	-	chr2.2:65746651-65746670	None:intergenic	30.0%
AAGAAACTCAATAGAAAGGT+TGG	+	chr2.2:65744736-65744755	MS.gene96276:intron	30.0%
AAGTTTAAGCAGTTAGAGAA+GGG	+	chr2.2:65745380-65745399	MS.gene96276:intron	30.0%
AATTGCGTACTATTCAGAAT+GGG	+	chr2.2:65745000-65745019	MS.gene96276:CDS	30.0%
ACCTTTCTTCCTTATAAAGA+TGG	-	chr2.2:65744607-65744626	None:intergenic	30.0%
ACTATCAACAATGTGAGAAA+AGG	-	chr2.2:65744448-65744467	None:intergenic	30.0%
AGAACACTATTATGAAGTTC+AGG	-	chr2.2:65748593-65748612	None:intergenic	30.0%
AGACTGATAAACAACATAGT+CGG	-	chr2.2:65744017-65744036	None:intergenic	30.0%
AGCATGGAAAAATCATTTCA+AGG	+	chr2.2:65747628-65747647	MS.gene96276:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	65743713	65748990	65743713	ID=MS.gene96276
chr2.2	mRNA	65743713	65748990	65743713	ID=MS.gene96276.t1;Parent=MS.gene96276
chr2.2	exon	65743713	65744225	65743713	ID=MS.gene96276.t1.exon1;Parent=MS.gene96276.t1
chr2.2	CDS	65743713	65744225	65743713	ID=cds.MS.gene96276.t1;Parent=MS.gene96276.t1
chr2.2	exon	65744512	65744624	65744512	ID=MS.gene96276.t1.exon2;Parent=MS.gene96276.t1
chr2.2	CDS	65744512	65744624	65744512	ID=cds.MS.gene96276.t1;Parent=MS.gene96276.t1
chr2.2	exon	65744961	65745220	65744961	ID=MS.gene96276.t1.exon3;Parent=MS.gene96276.t1
chr2.2	CDS	65744961	65745220	65744961	ID=cds.MS.gene96276.t1;Parent=MS.gene96276.t1
chr2.2	exon	65746541	65746662	65746541	ID=MS.gene96276.t1.exon4;Parent=MS.gene96276.t1
chr2.2	CDS	65746541	65746662	65746541	ID=cds.MS.gene96276.t1;Parent=MS.gene96276.t1
chr2.2	exon	65747630	65747698	65747630	ID=MS.gene96276.t1.exon5;Parent=MS.gene96276.t1
chr2.2	CDS	65747630	65747698	65747630	ID=cds.MS.gene96276.t1;Parent=MS.gene96276.t1
chr2.2	exon	65748650	65748703	65748650	ID=MS.gene96276.t1.exon6;Parent=MS.gene96276.t1
chr2.2	CDS	65748650	65748703	65748650	ID=cds.MS.gene96276.t1;Parent=MS.gene96276.t1
chr2.2	exon	65748841	65748990	65748841	ID=MS.gene96276.t1.exon7;Parent=MS.gene96276.t1
chr2.2	CDS	65748841	65748990	65748841	ID=cds.MS.gene96276.t1;Parent=MS.gene96276.t1

Gene Sequence

>MS.gene96276

ATGGACTCCACCTCTGGTCAGCTTGAGCCGGCCTCGGGTGCTAGAGCAAGTATTCCTGAAGTTGAGTATTGGCCTGAAGGAACTGTTGAGCAAGTCAGGGCTGCTAGGGCGCCTACTCCGATGGGAGAATCGTTAGGTTCTCCGTCATATGGTAGTAACCCTGGTAGTAGGAGGAAGAGTTATAGAACTTCGGTTTCTGGTTCTTCCTCCGAGGGTAATGTTGAGGGGAATGTTGAATTGGATGACCCTGGTTTTCCTGAGGTTTTGGTTGAACCTCAAGAAGATTCTGAGGAGTTCACGTCCGACTATGTTGTTTATCAGTCTGAGCCTGAGGAAGAAGAGACTGAGTACAAACTTGATAAGAAATTTGGAGCTCCTCATCCATTTATTGATCCGAAAATTAAAAAGCCGATAGAAGGAACACTTACGAGTGAGGAACTGTGGTGGAATTGGAGAAAGCCGGAGAAAGAACAATGGTCCAGATGGCAAAGGAGAAGACCTGACACTGAAACGGTTAGTTTGCATTAAATTGTCTTGGAAAAGTTTTTTGATGTTGTAATTACAATGTGTGTGCTTGTGTCTGTGTATGCATTTGCCGGTTTTGTGCTTTATGATTGAGTTTTTTATACCTAAAAATTTATTCACCTTTACAAGGTTATGCATTATTTAAATGGTCGTGTGGCCAGTTCATAAGTCCTTTCTTTAGTAACATTACCATATCGACAATCAAAGCCTTTTCTCACATTGTTGATAGTGAAGTCTTACACCTTGTGTCTGAATTTCTCTATAATATTTTCAGGTTTTCCTGAAAGCCATGGCAGAAACTGGACAAGTGAAGCTTTATGGTGAAGAGCCAACGTTAACAGAAACTGCTCTTTACCGAGCCAGGCGCCATCTTTATAAGGAAGAAAGGTATTGCCGACTTTTATGCTCACAACATAGTTCTGATTAGAATTAAGAAAGTGGTGTTTTCTGTAGTGAATCTTAATGCAAAACATATAAGAATTAAGAAATACTGCAAACAAGAAACTCAATAGAAAGGTTGGACAGTAGTTTCTTGAAGAATGAGTAAATTCGTTAAAGGCTAAAGAATAACCTTAATTCTAGTATTACTTGATGTGATTAAAATCATAAATTAAGGAGAGTAAGCTGATAAAGTTTACCACAATATGCCATGGGAACTTGTTATAAGGAGAGTTACTTGAAAAAATTTACTTGGAAAATGTTGAAAATTTCCGATTTTTGCAGGCTTGAGGCTGAGCAAGAGAAACTGGAAAGGATTGGTCCAATTGCGTACTATTCAGAATGGGTAAAGGCATGGAAGAGAGACACATCTCGTGAAGCTATTCAGAAGCACTTCGAAGAGACTGGTGAAGATGAAACCACTCAACTAATTGAAATGTTTTCCCACCAAACTGACCGAGAGTATCGTGTAATGATGGGGACTGATGTTCGCATCCGAAGGGATCCTTTGGCAATGAGAATGAGGGAGGATCAGATAAAGCAAAGTATTGACTTTGAAAATTAATATTTGCTTGTCATGTCTTCGTTTTTATTTTATTTCAGTCATCTTGTTATCTATCCTTTCATCTTCCTTTTTAGGATTCTATGACCATTCAACTGTATTTAGCATTGTTTGCCAAACAACCTCTTGACCCTACACCTAGAAGTTTAAGCAGTTAGAGAAGGGCATGAGAATAAGTTGTCTATCTAAGACATACTCCTATACACATGAAAGTCTACTAGGTATAATTGTGAGATCCCTATTGCTTAGTTGATAGTCAACTTGATAGGGACTTGGGTATTATGGGTGCCCAGTGGAGTATTTAAGTGGTTTGATTCTTCCCCTTTGGTAGCTAGCTTTTAAGGGCGGGTTTTCTAAGTATTTAGATACTTAGCAATTGCAATTAGAACTGGTTGTCGGCGGCTCGGAAAGGATTACCTGCGGAGGGGCAGATTGGAAATGGCCGAGTAAAGCGTCGTAGAATGCCAGTCGCTGAGATGTCGGCTCTCAATGGCAGTGCTATGTTAGGGACTTGGATATTATAGGGTGCCCAAGTCCCCCATCTAGTAATATGCTCAGTGGAGTACTTAAGTTTCCTGGTTCTTCCCCCTTTATAGTTAGTTTTTAAGGGTGGGTTCTCCATGTGCTTAGATACTTATCACAACTCTGCTCTGTCCAATATTTAATGTAGTTATGGTTTTTTTCCTTCTAGTAAATAACATTACTGTGTGTTTATAAGTATTACTGTGCTCTTATTAGGACTCAATTTGTCCGTATATAAAAAAAAAGGAATGAAAAAATATATGAAGACACATAACTGAAAGAATAATATTAACTTCCATATGCCTTTTTTTTCAGAGAAAAAACAAATTTTATTGAATTTTGTCTTGGGAACCTTAATATTGTCCTGGAAATGGCCGAGTTTTGTCCTGGAAAATATATGCAGAAACAAGCAGAATGTATTTCTGAGTTGTCCTGTTAATATTAACAGGACAACTCAGACTAATATATGAAGAGTTTTGGGGCTGATTGGAAATGGCCGAGTTTTGTCCTGGAGAATATATGAAGAAACATACTGAAAGAATAATATTAACAATCATATATTTAGTTTTGTCCTGGAAAACTCAGACTAACATTTTACCTTGATATTTTATTTAATGTTATCTACTTTTACCTCTAAGTATCTTTCTTAAACCACTCACTATTTGCACTAATGACTTCATGCTTTATGCGTTGACATCTTATGTTCAAATACTTGGCCACTCTAGATTCTAAATAATCTTAATCCAGAATAGCAATTGTTAAATTTCCCTTCTTTCTGCAGTATGGGGTGGAGATCCAGTTTATCCAACTGTGAACTATATTCAAGATCCAGATGAAGTGATTGACTACCGAGGGGCAGATTTTCATGAACCAACACCAAATATGCTGCCTTTTCTGAAGGAGGTTATTTTCTATATGCTCGTCTTATTTGTTTTCTATCATATGTTGCTTTCTGAAAATTTCGATTGCTAAAGGGACTACATTGTTATAATTAAGATCTTTACATAAAATAAATATGGAACATATCTTCAGGATGGAGTGCTCAAACGATATTTGAGATAAATATATCACTCTATGATTGATGTGCTGGAATATCAAGCATAGGTCGGTTTGGATTGATAGATTTGAGCTTATCTACTGGCTTAGGCACCTGTCGGACTGCTTGAGAGCTTATGGAAACATTCTTTTCAGCTTATTTCCATATTTTAAAAAATTTGACTTTATTTTATCTTTTGATATAGAAATAGCTTGTACACAAGCACCTATGTGACAAATGCTTATGCAATAAGCGCTTAATTAAGTTGTTTATCCTACAAGACACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATGAACTATCCTCTGTCCAAAATATAAGTTAGCTGTGGTCATTGATAATTACTTTTACAATCCTCTAAATTTAATTATTATGATATCATATAGTTCCTTGTTCTAGCTTCTTAGGTATCTTGTCTGACTTTTTTCACTAACTAAAAAAATTAAAAAAGTAAACGATAATTCTCCTCATTGCTTTATAAGTAAAGACTAGAGATGGAATATTAGCTGTTAAATTGATTTGCATTCAAATATTTTCAAGTTATCTGCTGCTTGTTACACTTACATCGATAAGGATGCTCCCAAGAGCACATGATATGTTTTCAAATATATGATTTTTTTTCTTTCCTTCTCTGTTGTTTGTTGAAATTATCAATTTTCAGACATGATGCATAATCCAATATTTTTATGAAATATGTGGTTATTTATTCGTTGCTAGCTAGTACTGAACTTCTTTTCCATTATATATGATCAGCATGGAAAAATCATTTCAAGGGAGGAGCTAGAAAAAATTCTGGAAAAGCAAAAGACTGAACAAGTTGAGGTAAGGAAGTACTGTAATAAGTATGAAATTCATAATAATGATAGTGAAGATATGGAACGAATGAATTATTTTGCAAATAGATGACTTGCTTGTTGGAAATTGTTTAATTTTTAAAAAAATCTATTGTTGAGCTTTGTATGGTTCACCAGCTCGGGTGTCAGAAAGTGAAATACAGACATTATATATGGTTTGGAACATTGATTGACTTTCGTTTCATTATATATGGTTCTGAACATTGAATGACTTTCGTTTCATTTTATGACTCGGTCTCTTCAATCGGGTTAACTTATAATTGAAAATCTGGATGTAAACAAAAATTGTAGATACAATTATAAATTCAAATGCAGAAAAGTGTGTAGTAGAACCAGTAAATGGTGAAGAAGCATTTTAAGGTTGATAGAATTTCGCACACTGAAAATGTGCAAAGGAAGTGAGAGTTCGATAGTAAGTAGAGAGTTGAGAGAAAGTGAAAATGATTTCATTGATTATGTTAAGGGATGAATACAACCTCATATAGCGACTTACCGTTCTAAGTTCTAACGAATCGAGTGTTCTAACTTCTAAGATCTAACAGATTGGATAACTAAAATACCTCAATGAATTCCAGAATGTGCTGACACGGCACATTTTCTTGTGCATAAAAGTATTCCAACTTTTTATAATAACTTCACCTAGCTATACTCTAATAAAAGTAAATACTATATGATAAGATTAAGCTTTCTCTTTATCAACCGACCTGTCATTCAATCCTTAATATTTTGTTACCACAGTATAGACATGTGACCATTTTCGACCTCATCAAAAGCTGTATCATGTTTATATTAAGTCGTTAACAACCAATTTTTTGTGGAATTATTACTTGGCATGATTGCTTGACCGTTGATTATTTTACCTGAACTTCATAATAGTGTTCTTTAGTTTGATAACCTTTTATTATTTGCAATATGGCAGGTGACAGACATCGATGAAGCTATGGCTAAAGCAGTCGATATTGGTGAAAATGATGTGAGCTTCGATTCACCATCTTTTTACTTTTCTAACTTAACAAGAGCAACTTCGCATGTCGTTGTCTGGCGAGTTCCATTCCAAAATGGTTGATTTTGAGTAACATTTCCTGTTTCATTTCTTACTTTATTGACCAGGATGAAGAGGATAGTGATGTTGATGTTGAAGAGGTAGTAGGAGAGGAAGAGGTAGAGGCAGAGGGAGATGAAGAGGAAGAGGAAGACGAATCAAAGATTAATCGTAATTGGAGTGTTTTGAAAACTACTCCCCAGCTTCGCAAATCAAAG

Protein sequence

>MS.gene96276.t1

MDSTSGQLEPASGARASIPEVEYWPEGTVEQVRAARAPTPMGESLGSPSYGSNPGSRRKSYRTSVSGSSSEGNVEGNVELDDPGFPEVLVEPQEDSEEFTSDYVVYQSEPEEEETEYKLDKKFGAPHPFIDPKIKKPIEGTLTSEELWWNWRKPEKEQWSRWQRRRPDTETVFLKAMAETGQVKLYGEEPTLTETALYRARRHLYKEERLEAEQEKLERIGPIAYYSEWVKAWKRDTSREAIQKHFEETGEDETTQLIEMFSHQTDREYRVMMGTDVRIRRDPLAMRMREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGADFHEPTPNMLPFLKEHGKIISREELEKILEKQKTEQVEVTDIDEAMAKAVDIGENDDEEDSDVDVEEVVGEEEVEAEGDEEEEEDESKINRNWSVLKTTPQLRKSK