AlfalfaGEDB | MS.gene58537

M. sativa cultivar XinJiangDaYe / MS.gene58537

KEGG: K00799
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00043.28 PF02798.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58537.t1	XP_003613500.1	94.3	228	13	0	1	228	1	228	1.10E-120	442.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58537.t1	Q9FUS9	56.2	219	95	1	1	219	1	218	1.4e-63	244.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58537.t1	G7K8A6	94.3	228	13	0	1	228	1	228	8.1e-121	442.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049346	MS.gene58537	0.831039	2.09E-55	-1.69E-46
MS.gene049351	MS.gene58537	0.853727	1.97E-61	-1.69E-46
MS.gene049491	MS.gene58537	0.8095	1.83E-50	-1.69E-46
MS.gene049599	MS.gene58537	-0.830868	2.30E-55	-1.69E-46
MS.gene049661	MS.gene58537	0.844752	6.22E-59	-1.69E-46
MS.gene049662	MS.gene58537	0.849973	2.29E-60	-1.69E-46
MS.gene049758	MS.gene58537	0.889849	1.67E-73	-1.69E-46
MS.gene049910	MS.gene58537	0.800787	1.22E-48	-1.69E-46
MS.gene050076	MS.gene58537	0.870013	2.01E-66	-1.69E-46
MS.gene050099	MS.gene58537	0.804452	2.15E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58537.t1	MTR_5g037380	94.298	228	13	0	1	228	1	228	1.90e-160	443
MS.gene58537.t1	MTR_8g061950	54.464	224	98	2	1	222	1	222	1.75e-83	248
MS.gene58537.t1	MTR_7g065740	45.249	221	110	4	1	218	1	213	6.32e-55	175
MS.gene58537.t1	MTR_7g065720	43.891	221	113	4	1	218	1	213	1.31e-54	174
MS.gene58537.t1	MTR_7g065660	42.273	220	117	3	1	218	1	212	9.25e-54	172
MS.gene58537.t1	MTR_7g065600	41.818	220	118	3	1	218	1	212	5.78e-52	167
MS.gene58537.t1	MTR_7g065750	43.119	218	113	4	1	215	1	210	1.35e-51	167
MS.gene58537.t1	MTR_2g070180	44.186	215	111	5	8	222	7	212	2.69e-51	166
MS.gene58537.t1	MTR_2g070110	42.601	223	118	4	4	226	3	215	4.14e-51	165
MS.gene58537.t1	MTR_4g019790	40.541	222	124	2	5	226	7	220	7.84e-51	165

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58537.t1	AT1G10360	56.164	219	95	1	1	219	1	218	1.07e-81	243
MS.gene58537.t1	AT1G10370	54.338	219	99	1	1	219	1	218	8.14e-79	236
MS.gene58537.t1	AT1G59700	51.163	215	103	2	5	218	6	219	4.27e-76	229
MS.gene58537.t1	AT1G59670	48.372	215	109	2	5	218	6	219	6.04e-70	214
MS.gene58537.t1	AT1G27130	48.198	222	110	3	1	219	1	220	4.04e-66	204
MS.gene58537.t1	AT1G27140	47.059	221	111	3	1	217	1	219	1.38e-61	193
MS.gene58537.t1	AT1G69920	45.455	220	116	2	2	219	31	248	1.69e-61	193
MS.gene58537.t1	AT1G69930	45.327	214	115	1	6	219	13	224	1.59e-60	190
MS.gene58537.t1	AT3G09270	40.541	222	124	4	6	226	7	221	4.10e-50	163
MS.gene58537.t1	AT2G29420	38.636	220	125	3	3	221	7	217	3.11e-49	161

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Find 47 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCCAGTTCTCATTCA+TGG	0.351236	5.3:-25649479	MS.gene58537:CDS
AAACTCCAGCTTTGGTGAAA+TGG	0.279993	5.3:-25648190	MS.gene58537:CDS
AACAGCAGCAGCCATAGCTA+CGG	0.594494	5.3:+25648097	None:intergenic
AACTAGCAGAAGTGCTTGTG+AGG	0.644124	5.3:-25648361	MS.gene58537:CDS
AACTCCAGCTTTGGTGAAAT+GGG	0.379925	5.3:-25648189	MS.gene58537:CDS
AATCCAAACCTTTGATTGAA+AGG	0.422743	5.3:+25649570	None:intergenic
ACCAGAAACTGATAAACTTG+TGG	0.558982	5.3:-25648126	MS.gene58537:CDS
AGAGAAATTTACTGGAGAGA+AGG	0.518055	5.3:-25648228	MS.gene58537:CDS
AGCAAATAAACCATTTCGTA+GGG	0.493313	5.3:+25648418	None:intergenic
AGCAGAAGTGCTTGTGAGGT+TGG	0.466597	5.3:-25648357	MS.gene58537:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCCAAACCTTTGATTGAA+AGG	+	chr5.3:25648159-25648178	None:intergenic	30.0%
ACTTTGACATTAGCCAATTT+AGG	+	chr5.3:25648908-25648927	None:intergenic	30.0%
AGCAAATAAACCATTTCGTA+GGG	+	chr5.3:25649311-25649330	None:intergenic	30.0%
AGGGTTAAAGAGAAATTTAC+TGG	-	chr5.3:25649490-25649509	MS.gene58537:CDS	30.0%
ATCCAAACCTTTGATTGAAA+GGG	+	chr5.3:25648158-25648177	None:intergenic	30.0%
ATTCCTTTCAATATGAGTGA+AGG	+	chr5.3:25648652-25648671	None:intergenic	30.0%
CATCACTCAATATGATATAG+TGG	+	chr5.3:25649235-25649254	None:intergenic	30.0%
TTGTGTCTCTCCAAATATAT+TGG	-	chr5.3:25648475-25648494	MS.gene58537:intron	30.0%
AAAATCCCAGTTCTCATTCA+TGG	-	chr5.3:25648247-25648266	MS.gene58537:CDS	35.0%
AAAGTCCCATTGTAACTGTA+GGG	-	chr5.3:25648923-25648942	MS.gene58537:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	25648088	25649660	25648088	ID=MS.gene58537
chr5.3	mRNA	25648088	25649660	25648088	ID=MS.gene58537.t1;Parent=MS.gene58537
chr5.3	exon	25649337	25649660	25649337	ID=MS.gene58537.t1.exon1;Parent=MS.gene58537.t1
chr5.3	CDS	25649337	25649660	25649337	ID=cds.MS.gene58537.t1;Parent=MS.gene58537.t1
chr5.3	exon	25648088	25648450	25648088	ID=MS.gene58537.t1.exon2;Parent=MS.gene58537.t1
chr5.3	CDS	25648088	25648450	25648088	ID=cds.MS.gene58537.t1;Parent=MS.gene58537.t1

Gene Sequence

>MS.gene58537

ATGGCTACAAATGACTTAAAGCTTTTGGGTGGTTGGTTCAGTCCATTTGCAGTGAGGGCACAAATTGCCCTTTCAATCAAAGGTTTGGATTATGAGAACATTGTAGAAAACTTGAATTCCAAAAGTGATTTGTTTCTTCAGTCCAACCCTGTTTACAAAAAAATCCCAGTTCTCATTCATGGAGATAAAGCCATTTGTGAATCTGCAATAATAGTTGAATATATTGATGAAGTTTGGAAAAATAATGATACTCCCTCAATCCTTCCTTCAAATGCTTATGATCGAGCCATTGCTAGATTTTGGGCTACCTACATCGATGACAAGGTATTAATTTATTTTCCTCATTCATTTTACTAACCTTAGTGAGATTTTTAGGATTAAATTGTATTGTGTCTCTCCAAATATATTGGTTTTTAATTTTTATTTTTTTTGGTTACAAGTTTTTAATTTTTAAATATCATTTTGCTTTTAATTATTTTATTATTGTTTTTTTTACAGGAATTATTTTATTATTGTTGTTTTGTTTTGATTCCTTTAAAATTTATTTATATAGAAATTGGTCCTTCACTCATATTGAAAGGAATAAAATCAATTATTCTACACGGTACCTTCTAATATAATTAAAGGTTGCACGAGCTAGAACATAACAACATGGATAAAAAAAATGTGTTACATTTGCAACTATGAAAAGAAACAAAAATAAAAAAAATTAGAGAGACTAAAAGCAGAAACGGTATATTTGAAGATCCAAATACACATTTAAACCAAATATTTGTATTCTGGTCTTGAATAGTTGAATATATCCTAAAGAATAAATCCTAAATTGGCTAATGTCAAAGTCCCATTGTAACTGTAGGGGTTAAGTCATGTTTAGTCATTGAAAAATATTCTTCTTTAAGTCCACAAAAATTTATTTATTTTTAGTCATAAGTTTACATAAATATATAATGTGCTTTTAGTCCTAAGAAGATCTGAAACACTTTTTTTTTTTTTTTTTTTGTATCTTGTAAGAGTAAAGGAAATCAGAAGTTGATAAAAATTATTGTTAATATTCATATTTCGCACTTTACAAGTCAATTTTGTGCGGCTCAATTACGATATAAACTATAAAATGTGATGAAATTTTAACATAAGGTATTCATTTCCACTATATCATATTGAGTGATGTTAATTCTGTTTTTGGTGCAATTTTTTGCAATTGGGAGCGTAGCTGTACAATTCCCTACGAAATGGTTTATTTGCTCAAGACATTGAGACAAAGAAGAAACATTTTGATGAACTAGCAGAAGTGCTTGTGAGGTTGGAAGATGTGTTGAACAAGAGCAGTGGAGGAAAGGACTTTTTTGGAGGAGAGAAAATTGGCTTTGTTGATATTGCTTTTGGATGCTATTTGAGTTGGTTGAGGGTTAAAGAGAAATTTACTGGAGAGAAGGCTTTTGATGAAACAAAAACTCCAGCTTTGGTGAAATGGGCTGAAGCTTTTGCTGCTGATCCTGCTGTGAAGGGAATTCTACCAGAAACTGATAAACTTGTGGAGTATGCCGTAGCTATGGCTGCTGCTGTTCCTAAGTAG

Protein sequence

>MS.gene58537.t1

MATNDLKLLGGWFSPFAVRAQIALSIKGLDYENIVENLNSKSDLFLQSNPVYKKIPVLIHGDKAICESAIIVEYIDEVWKNNDTPSILPSNAYDRAIARFWATYIDDKLYNSLRNGLFAQDIETKKKHFDELAEVLVRLEDVLNKSSGGKDFFGGEKIGFVDIAFGCYLSWLRVKEKFTGEKAFDETKTPALVKWAEAFAADPAVKGILPETDKLVEYAVAMAAAVPK