Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58537.t1 | XP_003613500.1 | 94.3 | 228 | 13 | 0 | 1 | 228 | 1 | 228 | 1.10E-120 | 442.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58537.t1 | Q9FUS9 | 56.2 | 219 | 95 | 1 | 1 | 219 | 1 | 218 | 1.4e-63 | 244.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58537.t1 | G7K8A6 | 94.3 | 228 | 13 | 0 | 1 | 228 | 1 | 228 | 8.1e-121 | 442.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene58537 | 0.831039 | 2.09E-55 | -1.69E-46 |
| MS.gene049351 | MS.gene58537 | 0.853727 | 1.97E-61 | -1.69E-46 |
| MS.gene049491 | MS.gene58537 | 0.8095 | 1.83E-50 | -1.69E-46 |
| MS.gene049599 | MS.gene58537 | -0.830868 | 2.30E-55 | -1.69E-46 |
| MS.gene049661 | MS.gene58537 | 0.844752 | 6.22E-59 | -1.69E-46 |
| MS.gene049662 | MS.gene58537 | 0.849973 | 2.29E-60 | -1.69E-46 |
| MS.gene049758 | MS.gene58537 | 0.889849 | 1.67E-73 | -1.69E-46 |
| MS.gene049910 | MS.gene58537 | 0.800787 | 1.22E-48 | -1.69E-46 |
| MS.gene050076 | MS.gene58537 | 0.870013 | 2.01E-66 | -1.69E-46 |
| MS.gene050099 | MS.gene58537 | 0.804452 | 2.15E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene58537 | 0.8735 | 1.40E-67 | -1.69E-46 |
| MS.gene050319 | MS.gene58537 | -0.806864 | 6.69E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene58537 | 0.860582 | 1.87E-63 | -1.69E-46 |
| MS.gene050432 | MS.gene58537 | 0.857505 | 1.56E-62 | -1.69E-46 |
| MS.gene050529 | MS.gene58537 | 0.82415 | 9.43E-54 | -1.69E-46 |
| MS.gene050670 | MS.gene58537 | 0.808946 | 2.41E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene58537 | 0.845162 | 4.82E-59 | -1.69E-46 |
| MS.gene05105 | MS.gene58537 | 0.811194 | 7.91E-51 | -1.69E-46 |
| MS.gene05119 | MS.gene58537 | -0.854105 | 1.54E-61 | -1.69E-46 |
| MS.gene051471 | MS.gene58537 | 0.820338 | 7.23E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene58537 | 0.827602 | 1.43E-54 | -1.69E-46 |
| MS.gene051662 | MS.gene58537 | 0.801294 | 9.64E-49 | -1.69E-46 |
| MS.gene051663 | MS.gene58537 | 0.810972 | 8.83E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene58537 | 0.828206 | 1.02E-54 | -1.69E-46 |
| MS.gene051877 | MS.gene58537 | 0.813682 | 2.26E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene58537 | -0.807873 | 4.09E-50 | -1.69E-46 |
| MS.gene052025 | MS.gene58537 | 0.82854 | 8.49E-55 | -1.69E-46 |
| MS.gene052077 | MS.gene58537 | 0.821419 | 4.08E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene58537 | 0.873246 | 1.71E-67 | -1.69E-46 |
| MS.gene052178 | MS.gene58537 | 0.820405 | 6.98E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene58537 | 0.818295 | 2.11E-52 | -1.69E-46 |
| MS.gene052207 | MS.gene58537 | 0.814333 | 1.63E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene58537 | 0.842443 | 2.58E-58 | -1.69E-46 |
| MS.gene052290 | MS.gene58537 | 0.800254 | 1.57E-48 | -1.69E-46 |
| MS.gene052310 | MS.gene58537 | 0.837418 | 5.26E-57 | -1.69E-46 |
| MS.gene052322 | MS.gene58537 | 0.811459 | 6.93E-51 | -1.69E-46 |
| MS.gene052326 | MS.gene58537 | 0.841894 | 3.60E-58 | -1.69E-46 |
| MS.gene052340 | MS.gene58537 | 0.827448 | 1.56E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene58537 | 0.801134 | 1.04E-48 | -1.69E-46 |
| MS.gene053209 | MS.gene58537 | 0.88701 | 2.08E-72 | -1.69E-46 |
| MS.gene053557 | MS.gene58537 | 0.814007 | 1.92E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene58537 | 0.889858 | 1.66E-73 | -1.69E-46 |
| MS.gene053907 | MS.gene58537 | 0.821239 | 4.49E-53 | -1.69E-46 |
| MS.gene054011 | MS.gene58537 | 0.821218 | 4.54E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene58537 | 0.803292 | 3.74E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene58537 | 0.802675 | 5.01E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene58537 | 0.862656 | 4.34E-64 | -1.69E-46 |
| MS.gene054930 | MS.gene58537 | 0.814562 | 1.45E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene58537 | 0.834098 | 3.65E-56 | -1.69E-46 |
| MS.gene055254 | MS.gene58537 | 0.803293 | 3.74E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene58537 | 0.924055 | 1.17E-89 | -1.69E-46 |
| MS.gene055390 | MS.gene58537 | 0.834089 | 3.67E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene58537 | 0.873183 | 1.79E-67 | -1.69E-46 |
| MS.gene055428 | MS.gene58537 | 0.89946 | 1.94E-77 | -1.69E-46 |
| MS.gene055604 | MS.gene58537 | 0.835388 | 1.73E-56 | -1.69E-46 |
| MS.gene055712 | MS.gene58537 | 0.820872 | 5.45E-53 | -1.69E-46 |
| MS.gene055859 | MS.gene58537 | 0.811545 | 6.64E-51 | -1.69E-46 |
| MS.gene056069 | MS.gene58537 | -0.802866 | 4.58E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene58537 | 0.820861 | 5.48E-53 | -1.69E-46 |
| MS.gene056314 | MS.gene58537 | 0.82954 | 4.86E-55 | -1.69E-46 |
| MS.gene056407 | MS.gene58537 | 0.844714 | 6.37E-59 | -1.69E-46 |
| MS.gene056410 | MS.gene58537 | 0.813113 | 3.02E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene58537 | 0.856915 | 2.33E-62 | -1.69E-46 |
| MS.gene056659 | MS.gene58537 | 0.824255 | 8.91E-54 | -1.69E-46 |
| MS.gene056796 | MS.gene58537 | 0.818043 | 2.41E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene58537 | 0.890277 | 1.14E-73 | -1.69E-46 |
| MS.gene057121 | MS.gene58537 | 0.823943 | 1.06E-53 | -1.69E-46 |
| MS.gene057123 | MS.gene58537 | 0.815173 | 1.06E-51 | -1.69E-46 |
| MS.gene057245 | MS.gene58537 | 0.825747 | 3.96E-54 | -1.69E-46 |
| MS.gene05733 | MS.gene58537 | 0.819317 | 1.24E-52 | -1.69E-46 |
| MS.gene057439 | MS.gene58537 | 0.829831 | 4.13E-55 | -1.69E-46 |
| MS.gene057469 | MS.gene58537 | 0.805409 | 1.35E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene58537 | 0.856401 | 3.30E-62 | -1.69E-46 |
| MS.gene058082 | MS.gene58537 | 0.850458 | 1.68E-60 | -1.69E-46 |
| MS.gene05811 | MS.gene58537 | 0.852178 | 5.47E-61 | -1.69E-46 |
| MS.gene058142 | MS.gene58537 | 0.819896 | 9.13E-53 | -1.69E-46 |
| MS.gene058233 | MS.gene58537 | 0.852182 | 5.46E-61 | -1.69E-46 |
| MS.gene058293 | MS.gene58537 | 0.808394 | 3.16E-50 | -1.69E-46 |
| MS.gene058365 | MS.gene58537 | 0.824589 | 7.44E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene58537 | 0.853952 | 1.70E-61 | -1.69E-46 |
| MS.gene058710 | MS.gene58537 | 0.847331 | 1.24E-59 | -1.69E-46 |
| MS.gene058749 | MS.gene58537 | 0.81427 | 1.68E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene58537 | 0.833466 | 5.25E-56 | -1.69E-46 |
| MS.gene059033 | MS.gene58537 | -0.867116 | 1.73E-65 | -1.69E-46 |
| MS.gene05907 | MS.gene58537 | 0.862081 | 6.52E-64 | -1.69E-46 |
| MS.gene059228 | MS.gene58537 | 0.816323 | 5.87E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene58537 | 0.821906 | 3.15E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene58537 | 0.857015 | 2.18E-62 | -1.69E-46 |
| MS.gene059597 | MS.gene58537 | 0.83091 | 2.25E-55 | -1.69E-46 |
| MS.gene059676 | MS.gene58537 | 0.829486 | 5.01E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene58537 | 0.847311 | 1.25E-59 | -1.69E-46 |
| MS.gene059692 | MS.gene58537 | 0.864569 | 1.11E-64 | -1.69E-46 |
| MS.gene059695 | MS.gene58537 | 0.859332 | 4.45E-63 | -1.69E-46 |
| MS.gene05984 | MS.gene58537 | 0.857512 | 1.55E-62 | -1.69E-46 |
| MS.gene059894 | MS.gene58537 | 0.872041 | 4.31E-67 | -1.69E-46 |
| MS.gene059974 | MS.gene58537 | 0.811209 | 7.85E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene58537 | 0.880809 | 4.04E-70 | -1.69E-46 |
| MS.gene060407 | MS.gene58537 | 0.804089 | 2.55E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene58537 | 0.822419 | 2.39E-53 | -1.69E-46 |
| MS.gene060569 | MS.gene58537 | 0.820182 | 7.85E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene58537 | 0.896699 | 2.87E-76 | -1.69E-46 |
| MS.gene061051 | MS.gene58537 | -0.812505 | 4.10E-51 | -1.69E-46 |
| MS.gene061265 | MS.gene58537 | 0.800738 | 1.25E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58537.t1 | MTR_5g037380 | 94.298 | 228 | 13 | 0 | 1 | 228 | 1 | 228 | 1.90e-160 | 443 |
| MS.gene58537.t1 | MTR_8g061950 | 54.464 | 224 | 98 | 2 | 1 | 222 | 1 | 222 | 1.75e-83 | 248 |
| MS.gene58537.t1 | MTR_7g065740 | 45.249 | 221 | 110 | 4 | 1 | 218 | 1 | 213 | 6.32e-55 | 175 |
| MS.gene58537.t1 | MTR_7g065720 | 43.891 | 221 | 113 | 4 | 1 | 218 | 1 | 213 | 1.31e-54 | 174 |
| MS.gene58537.t1 | MTR_7g065660 | 42.273 | 220 | 117 | 3 | 1 | 218 | 1 | 212 | 9.25e-54 | 172 |
| MS.gene58537.t1 | MTR_7g065600 | 41.818 | 220 | 118 | 3 | 1 | 218 | 1 | 212 | 5.78e-52 | 167 |
| MS.gene58537.t1 | MTR_7g065750 | 43.119 | 218 | 113 | 4 | 1 | 215 | 1 | 210 | 1.35e-51 | 167 |
| MS.gene58537.t1 | MTR_2g070180 | 44.186 | 215 | 111 | 5 | 8 | 222 | 7 | 212 | 2.69e-51 | 166 |
| MS.gene58537.t1 | MTR_2g070110 | 42.601 | 223 | 118 | 4 | 4 | 226 | 3 | 215 | 4.14e-51 | 165 |
| MS.gene58537.t1 | MTR_4g019790 | 40.541 | 222 | 124 | 2 | 5 | 226 | 7 | 220 | 7.84e-51 | 165 |
| MS.gene58537.t1 | MTR_7g065270 | 42.273 | 220 | 117 | 3 | 1 | 218 | 1 | 212 | 1.54e-50 | 164 |
| MS.gene58537.t1 | MTR_2g070150 | 43.396 | 212 | 111 | 4 | 3 | 214 | 2 | 204 | 2.57e-50 | 163 |
| MS.gene58537.t1 | MTR_7g065290 | 41.704 | 223 | 120 | 3 | 1 | 221 | 1 | 215 | 2.83e-50 | 163 |
| MS.gene58537.t1 | MTR_1g115195 | 42.453 | 212 | 117 | 2 | 5 | 216 | 3 | 209 | 2.95e-50 | 163 |
| MS.gene58537.t1 | MTR_2g070070 | 41.256 | 223 | 122 | 4 | 4 | 226 | 3 | 216 | 5.93e-50 | 162 |
| MS.gene58537.t1 | MTR_4g019780 | 40.529 | 227 | 124 | 4 | 1 | 224 | 1 | 219 | 2.52e-49 | 161 |
| MS.gene58537.t1 | MTR_3g099757 | 41.441 | 222 | 122 | 3 | 1 | 222 | 1 | 214 | 5.05e-49 | 160 |
| MS.gene58537.t1 | MTR_7g065590 | 40.909 | 220 | 120 | 3 | 1 | 218 | 1 | 212 | 5.09e-49 | 160 |
| MS.gene58537.t1 | MTR_1g090100 | 40.724 | 221 | 125 | 3 | 6 | 226 | 3 | 217 | 6.05e-49 | 160 |
| MS.gene58537.t1 | MTR_7g065710 | 42.661 | 218 | 112 | 4 | 1 | 218 | 1 | 205 | 9.67e-49 | 159 |
| MS.gene58537.t1 | MTR_2g070130 | 43.182 | 220 | 116 | 5 | 3 | 222 | 2 | 212 | 1.39e-48 | 159 |
| MS.gene58537.t1 | MTR_1g090060 | 40.654 | 214 | 121 | 3 | 5 | 218 | 3 | 210 | 1.74e-48 | 159 |
| MS.gene58537.t1 | MTR_2g070200 | 41.014 | 217 | 119 | 4 | 3 | 218 | 2 | 210 | 2.55e-48 | 158 |
| MS.gene58537.t1 | MTR_7g065265 | 41.818 | 220 | 118 | 3 | 1 | 218 | 1 | 212 | 3.35e-48 | 158 |
| MS.gene58537.t1 | MTR_7g065630 | 39.556 | 225 | 124 | 3 | 2 | 226 | 22 | 234 | 3.41e-48 | 159 |
| MS.gene58537.t1 | MTR_2g070060 | 39.462 | 223 | 126 | 3 | 4 | 226 | 3 | 216 | 4.05e-48 | 157 |
| MS.gene58537.t1 | MTR_6g080440 | 44.059 | 202 | 105 | 3 | 17 | 218 | 15 | 208 | 1.06e-47 | 157 |
| MS.gene58537.t1 | MTR_2g070210 | 42.986 | 221 | 115 | 5 | 4 | 222 | 3 | 214 | 1.08e-47 | 157 |
| MS.gene58537.t1 | MTR_1g090090 | 39.631 | 217 | 119 | 4 | 5 | 218 | 3 | 210 | 1.60e-47 | 156 |
| MS.gene58537.t1 | MTR_1g090070 | 38.667 | 225 | 127 | 5 | 5 | 226 | 9 | 225 | 1.98e-47 | 156 |
| MS.gene58537.t1 | MTR_7g065640 | 38.636 | 220 | 107 | 4 | 1 | 218 | 1 | 194 | 1.03e-46 | 154 |
| MS.gene58537.t1 | MTR_7g065260 | 43.662 | 213 | 108 | 5 | 1 | 210 | 8 | 211 | 2.95e-46 | 153 |
| MS.gene58537.t1 | MTR_8g087425 | 38.532 | 218 | 126 | 2 | 1 | 218 | 1 | 210 | 3.11e-46 | 153 |
| MS.gene58537.t1 | MTR_7g065230 | 41.509 | 212 | 109 | 5 | 1 | 210 | 1 | 199 | 9.97e-46 | 152 |
| MS.gene58537.t1 | MTR_8g087410 | 37.900 | 219 | 128 | 3 | 1 | 219 | 2 | 212 | 1.16e-45 | 152 |
| MS.gene58537.t1 | MTR_5g040430 | 37.209 | 215 | 131 | 3 | 3 | 216 | 5 | 216 | 1.24e-45 | 151 |
| MS.gene58537.t1 | MTR_2g070140 | 41.951 | 205 | 110 | 4 | 18 | 222 | 1 | 196 | 1.56e-45 | 150 |
| MS.gene58537.t1 | MTR_3g467430 | 40.000 | 220 | 123 | 4 | 1 | 220 | 5 | 215 | 4.07e-45 | 150 |
| MS.gene58537.t1 | MTR_3g467420 | 40.991 | 222 | 116 | 5 | 2 | 220 | 6 | 215 | 6.69e-45 | 149 |
| MS.gene58537.t1 | MTR_7g065680 | 40.541 | 222 | 120 | 3 | 5 | 226 | 7 | 216 | 7.96e-45 | 149 |
| MS.gene58537.t1 | MTR_1g090150 | 40.278 | 216 | 118 | 4 | 5 | 218 | 3 | 209 | 4.68e-44 | 147 |
| MS.gene58537.t1 | MTR_7g065700 | 40.952 | 210 | 112 | 4 | 5 | 214 | 7 | 204 | 1.36e-43 | 146 |
| MS.gene58537.t1 | MTR_4g059730 | 36.818 | 220 | 131 | 4 | 4 | 222 | 3 | 215 | 1.15e-41 | 141 |
| MS.gene58537.t1 | MTR_8g056940 | 41.176 | 221 | 115 | 6 | 3 | 220 | 2 | 210 | 1.41e-41 | 141 |
| MS.gene58537.t1 | MTR_2g070120 | 38.140 | 215 | 124 | 4 | 4 | 218 | 3 | 208 | 3.55e-41 | 140 |
| MS.gene58537.t1 | MTR_5g076900 | 37.156 | 218 | 126 | 5 | 4 | 220 | 5 | 212 | 9.59e-41 | 139 |
| MS.gene58537.t1 | MTR_4g124130 | 38.249 | 217 | 124 | 7 | 4 | 219 | 3 | 210 | 3.74e-38 | 132 |
| MS.gene58537.t1 | MTR_0186s0030 | 47.586 | 145 | 67 | 4 | 3 | 144 | 2 | 140 | 7.68e-32 | 114 |
| MS.gene58537.t1 | MTR_5g037390 | 73.973 | 73 | 19 | 0 | 29 | 101 | 11 | 83 | 1.46e-30 | 108 |
| MS.gene58537.t1 | MTR_2g072120 | 59.091 | 66 | 25 | 1 | 49 | 114 | 2 | 65 | 8.52e-22 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58537.t1 | AT1G10360 | 56.164 | 219 | 95 | 1 | 1 | 219 | 1 | 218 | 1.07e-81 | 243 |
| MS.gene58537.t1 | AT1G10370 | 54.338 | 219 | 99 | 1 | 1 | 219 | 1 | 218 | 8.14e-79 | 236 |
| MS.gene58537.t1 | AT1G59700 | 51.163 | 215 | 103 | 2 | 5 | 218 | 6 | 219 | 4.27e-76 | 229 |
| MS.gene58537.t1 | AT1G59670 | 48.372 | 215 | 109 | 2 | 5 | 218 | 6 | 219 | 6.04e-70 | 214 |
| MS.gene58537.t1 | AT1G27130 | 48.198 | 222 | 110 | 3 | 1 | 219 | 1 | 220 | 4.04e-66 | 204 |
| MS.gene58537.t1 | AT1G27140 | 47.059 | 221 | 111 | 3 | 1 | 217 | 1 | 219 | 1.38e-61 | 193 |
| MS.gene58537.t1 | AT1G69920 | 45.455 | 220 | 116 | 2 | 2 | 219 | 31 | 248 | 1.69e-61 | 193 |
| MS.gene58537.t1 | AT1G69930 | 45.327 | 214 | 115 | 1 | 6 | 219 | 13 | 224 | 1.59e-60 | 190 |
| MS.gene58537.t1 | AT3G09270 | 40.541 | 222 | 124 | 4 | 6 | 226 | 7 | 221 | 4.10e-50 | 163 |
| MS.gene58537.t1 | AT2G29420 | 38.636 | 220 | 125 | 3 | 3 | 221 | 7 | 217 | 3.11e-49 | 161 |
| MS.gene58537.t1 | AT2G29490 | 38.393 | 224 | 129 | 4 | 4 | 226 | 6 | 221 | 3.74e-48 | 158 |
| MS.gene58537.t1 | AT1G78340 | 41.284 | 218 | 115 | 4 | 4 | 219 | 3 | 209 | 1.39e-45 | 151 |
| MS.gene58537.t1 | AT1G78320 | 42.991 | 214 | 113 | 4 | 4 | 217 | 3 | 207 | 2.94e-45 | 150 |
| MS.gene58537.t1 | AT1G78380 | 40.183 | 219 | 122 | 4 | 4 | 222 | 3 | 212 | 7.07e-45 | 149 |
| MS.gene58537.t1 | AT1G78370 | 38.318 | 214 | 119 | 4 | 8 | 219 | 7 | 209 | 1.71e-44 | 148 |
| MS.gene58537.t1 | AT1G17170 | 40.000 | 215 | 119 | 3 | 4 | 218 | 3 | 207 | 1.12e-43 | 146 |
| MS.gene58537.t1 | AT2G29480 | 38.426 | 216 | 118 | 6 | 6 | 217 | 8 | 212 | 4.45e-43 | 145 |
| MS.gene58537.t1 | AT2G29470 | 35.426 | 223 | 134 | 4 | 6 | 226 | 8 | 222 | 8.87e-43 | 144 |
| MS.gene58537.t1 | AT1G17190 | 40.090 | 222 | 124 | 5 | 1 | 222 | 1 | 213 | 9.37e-43 | 144 |
| MS.gene58537.t1 | AT1G17180 | 40.000 | 220 | 117 | 7 | 3 | 219 | 2 | 209 | 1.50e-42 | 144 |
| MS.gene58537.t1 | AT2G29450 | 37.500 | 224 | 132 | 3 | 4 | 226 | 5 | 221 | 3.05e-42 | 143 |
| MS.gene58537.t1 | AT1G78360 | 39.450 | 218 | 118 | 5 | 8 | 222 | 7 | 213 | 2.26e-41 | 140 |
| MS.gene58537.t1 | AT2G29460 | 35.909 | 220 | 124 | 5 | 4 | 218 | 6 | 213 | 3.92e-41 | 140 |
| MS.gene58537.t1 | AT1G53680 | 39.352 | 216 | 122 | 5 | 8 | 222 | 10 | 217 | 1.46e-40 | 139 |
| MS.gene58537.t1 | AT2G29440 | 37.333 | 225 | 132 | 4 | 3 | 226 | 4 | 220 | 1.70e-40 | 138 |
| MS.gene58537.t1 | AT3G43800 | 36.889 | 225 | 131 | 5 | 1 | 222 | 1 | 217 | 2.99e-40 | 138 |
| MS.gene58537.t1 | AT5G62480 | 35.321 | 218 | 134 | 3 | 4 | 217 | 7 | 221 | 3.54e-37 | 130 |
| MS.gene58537.t1 | AT1G74590 | 32.701 | 211 | 139 | 2 | 8 | 218 | 10 | 217 | 1.47e-36 | 128 |
| MS.gene58537.t1 | AT1G78320 | 35.047 | 214 | 103 | 4 | 4 | 217 | 3 | 180 | 1.47e-28 | 107 |
| MS.gene58537.t1 | AT5G62480 | 28.440 | 218 | 122 | 3 | 4 | 217 | 7 | 194 | 1.32e-21 | 89.4 |
| MS.gene58537.t1 | AT5G62480 | 27.982 | 218 | 124 | 3 | 4 | 217 | 7 | 195 | 2.86e-21 | 88.6 |
| MS.gene58537.t1 | AT2G02380 | 41.346 | 104 | 51 | 5 | 6 | 105 | 12 | 109 | 6.82e-11 | 60.5 |
Find 47 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAGCCATTGCTAGATTT+TGG | 0.154404 | 5.3:-25649358 | MS.gene58537:CDS |
| TCCACAAGTTTATCAGTTTC+TGG | 0.176738 | 5.3:+25648125 | None:intergenic |
| TACAAATGACTTAAAGCTTT+TGG | 0.189237 | 5.3:-25649633 | MS.gene58537:CDS |
| GGCTTTGTTGATATTGCTTT+TGG | 0.238595 | 5.3:-25648278 | MS.gene58537:CDS |
| TTGAATATATTGATGAAGTT+TGG | 0.240973 | 5.3:-25649424 | MS.gene58537:CDS |
| AGGGTTAAAGAGAAATTTAC+TGG | 0.266113 | 5.3:-25648236 | MS.gene58537:CDS |
| CTGAAGAAACAAATCACTTT+TGG | 0.266212 | 5.3:+25649520 | None:intergenic |
| AAACTCCAGCTTTGGTGAAA+TGG | 0.279993 | 5.3:-25648190 | MS.gene58537:CDS |
| TGCCCTTTCAATCAAAGGTT+TGG | 0.302670 | 5.3:-25649573 | MS.gene58537:CDS |
| AAAATCCCAGTTCTCATTCA+TGG | 0.351236 | 5.3:-25649479 | MS.gene58537:CDS |
| AACTCCAGCTTTGGTGAAAT+GGG | 0.379925 | 5.3:-25648189 | MS.gene58537:CDS |
| TTATCTCCATGAATGAGAAC+TGG | 0.409182 | 5.3:+25649473 | None:intergenic |
| TGCTGCTGATCCTGCTGTGA+AGG | 0.418005 | 5.3:-25648156 | MS.gene58537:CDS |
| ATTTGTGCCCTCACTGCAAA+TGG | 0.420611 | 5.3:+25649596 | None:intergenic |
| AATCCAAACCTTTGATTGAA+AGG | 0.422743 | 5.3:+25649570 | None:intergenic |
| ATCCAAACCTTTGATTGAAA+GGG | 0.436790 | 5.3:+25649571 | None:intergenic |
| CAAATTGCCCTTTCAATCAA+AGG | 0.440999 | 5.3:-25649578 | MS.gene58537:CDS |
| GCATTTGAAGGAAGGATTGA+GGG | 0.446813 | 5.3:+25649386 | None:intergenic |
| TCAGCCCATTTCACCAAAGC+TGG | 0.450590 | 5.3:+25648185 | None:intergenic |
| CTGTACAATTCCCTACGAAA+TGG | 0.454126 | 5.3:-25648428 | MS.gene58537:CDS |
| GTTCAGTCCATTTGCAGTGA+GGG | 0.459556 | 5.3:-25649603 | MS.gene58537:CDS |
| AGCAGAAGTGCTTGTGAGGT+TGG | 0.466597 | 5.3:-25648357 | MS.gene58537:CDS |
| TATTATTGCAGATTCACAAA+TGG | 0.479491 | 5.3:+25649448 | None:intergenic |
| AGCAAATAAACCATTTCGTA+GGG | 0.493313 | 5.3:+25648418 | None:intergenic |
| ATGCTATTTGAGTTGGTTGA+GGG | 0.498921 | 5.3:-25648255 | MS.gene58537:CDS |
| GAGCAAATAAACCATTTCGT+AGG | 0.505314 | 5.3:+25648417 | None:intergenic |
| AGCATTTGAAGGAAGGATTG+AGG | 0.510266 | 5.3:+25649385 | None:intergenic |
| GATGCTATTTGAGTTGGTTG+AGG | 0.515089 | 5.3:-25648256 | MS.gene58537:CDS |
| AGAGAAATTTACTGGAGAGA+AGG | 0.518055 | 5.3:-25648228 | MS.gene58537:CDS |
| GCTGCTGATCCTGCTGTGAA+GGG | 0.518550 | 5.3:-25648155 | MS.gene58537:CDS |
| GGTAGAATTCCCTTCACAGC+AGG | 0.524477 | 5.3:+25648146 | None:intergenic |
| GCTCGATCATAAGCATTTGA+AGG | 0.528885 | 5.3:+25649374 | None:intergenic |
| TAATACCTTGTCATCGATGT+AGG | 0.530847 | 5.3:+25649331 | None:intergenic |
| GATCATAAGCATTTGAAGGA+AGG | 0.533721 | 5.3:+25649378 | None:intergenic |
| GAACAAGAGCAGTGGAGGAA+AGG | 0.556671 | 5.3:-25648324 | MS.gene58537:CDS |
| TATCTCACATTCCTCTACTT+AGG | 0.557566 | 5.3:+25648074 | None:intergenic |
| ACCAGAAACTGATAAACTTG+TGG | 0.558982 | 5.3:-25648126 | MS.gene58537:CDS |
| TATCTCCATGAATGAGAACT+GGG | 0.572303 | 5.3:+25649474 | None:intergenic |
| TGTGGAGTATGCCGTAGCTA+TGG | 0.576174 | 5.3:-25648108 | MS.gene58537:CDS |
| GGTTCAGTCCATTTGCAGTG+AGG | 0.592150 | 5.3:-25649604 | MS.gene58537:CDS |
| AACAGCAGCAGCCATAGCTA+CGG | 0.594494 | 5.3:+25648097 | None:intergenic |
| GTGTTGAACAAGAGCAGTGG+AGG | 0.596176 | 5.3:-25648329 | MS.gene58537:CDS |
| CTGCTGCTGTTCCTAAGTAG+AGG | 0.599097 | 5.3:-25648085 | None:intergenic |
| GGTAGCCCAAAATCTAGCAA+TGG | 0.641759 | 5.3:+25649352 | None:intergenic |
| AACTAGCAGAAGTGCTTGTG+AGG | 0.644124 | 5.3:-25648361 | MS.gene58537:CDS |
| GATGTGTTGAACAAGAGCAG+TGG | 0.649610 | 5.3:-25648332 | MS.gene58537:CDS |
| GGCTACCTACATCGATGACA+AGG | 0.662536 | 5.3:-25649336 | MS.gene58537:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTTTTATTTTTTT+TGG | - | chr5.3:25648498-25648517 | MS.gene58537:intron | 0.0% |
| !! | AAATTAAAAACCAATATATT+TGG | + | chr5.3:25648488-25648507 | None:intergenic | 10.0% |
| !!! | TTTATTATTGTTTTTTTTAC+AGG | - | chr5.3:25648564-25648583 | MS.gene58537:intron | 10.0% |
| !! | ATAAAATCAATTATTCTACA+CGG | - | chr5.3:25648670-25648689 | MS.gene58537:intron | 15.0% |
| !! | CAACCTTTAATTATATTAGA+AGG | + | chr5.3:25648698-25648717 | None:intergenic | 20.0% |
| !! | CTAAAGAATAAATCCTAAAT+TGG | - | chr5.3:25648892-25648911 | MS.gene58537:intron | 20.0% |
| !! | GTACCTTCTAATATAATTAA+AGG | - | chr5.3:25648692-25648711 | MS.gene58537:intron | 20.0% |
| !! | TAAACCAAATATTTGTATTC+TGG | - | chr5.3:25648848-25648867 | MS.gene58537:intron | 20.0% |
| !! | TTGAATATATTGATGAAGTT+TGG | - | chr5.3:25648302-25648321 | MS.gene58537:CDS | 20.0% |
| !!! | ATTTGGTTTAAATGTGTATT+TGG | + | chr5.3:25648838-25648857 | None:intergenic | 20.0% |
| !!! | CAATTTAGGATTTATTCTTT+AGG | + | chr5.3:25648894-25648913 | None:intergenic | 20.0% |
| !!! | TGTGATGAAATTTTAACATA+AGG | - | chr5.3:25649200-25649219 | MS.gene58537:intron | 20.0% |
| ! | AAGACCAGAATACAAATATT+TGG | + | chr5.3:25648855-25648874 | None:intergenic | 25.0% |
| ! | TAAGGTTAGTAAAATGAATG+AGG | + | chr5.3:25648430-25648449 | None:intergenic | 25.0% |
| ! | TAATCCTAAAAATCTCACTA+AGG | + | chr5.3:25648448-25648467 | None:intergenic | 25.0% |
| ! | TATTATTGCAGATTCACAAA+TGG | + | chr5.3:25648281-25648300 | None:intergenic | 25.0% |
| ! | TTTGTATCTTGTAAGAGTAA+AGG | - | chr5.3:25649084-25649103 | MS.gene58537:intron | 25.0% |
| !! | ACAAATGACTTAAAGCTTTT+GGG | - | chr5.3:25648094-25648113 | MS.gene58537:CDS | 25.0% |
| !! | AGTGATGTTAATTCTGTTTT+TGG | - | chr5.3:25649248-25649267 | MS.gene58537:intron | 25.0% |
| !! | TACAAATGACTTAAAGCTTT+TGG | - | chr5.3:25648093-25648112 | MS.gene58537:CDS | 25.0% |
| AATCCAAACCTTTGATTGAA+AGG | + | chr5.3:25648159-25648178 | None:intergenic | 30.0% | |
| ACTTTGACATTAGCCAATTT+AGG | + | chr5.3:25648908-25648927 | None:intergenic | 30.0% | |
| AGCAAATAAACCATTTCGTA+GGG | + | chr5.3:25649311-25649330 | None:intergenic | 30.0% | |
| AGGGTTAAAGAGAAATTTAC+TGG | - | chr5.3:25649490-25649509 | MS.gene58537:CDS | 30.0% | |
| ATCCAAACCTTTGATTGAAA+GGG | + | chr5.3:25648158-25648177 | None:intergenic | 30.0% | |
| ATTCCTTTCAATATGAGTGA+AGG | + | chr5.3:25648652-25648671 | None:intergenic | 30.0% | |
| CATCACTCAATATGATATAG+TGG | + | chr5.3:25649235-25649254 | None:intergenic | 30.0% | |
| TTGTGTCTCTCCAAATATAT+TGG | - | chr5.3:25648475-25648494 | MS.gene58537:intron | 30.0% | |
| ! | AAAGTGTTTCAGATCTTCTT+AGG | + | chr5.3:25649051-25649070 | None:intergenic | 30.0% |
| ! | CTAACCTTAGTGAGATTTTT+AGG | - | chr5.3:25648441-25648460 | MS.gene58537:intron | 30.0% |
| ! | CTGAAGAAACAAATCACTTT+TGG | + | chr5.3:25648209-25648228 | None:intergenic | 30.0% |
| ! | CTTTACAAGTCAATTTTGTG+CGG | - | chr5.3:25649152-25649171 | MS.gene58537:intron | 30.0% |
| !!! | ACTGGGATTTTTTTGTAAAC+AGG | + | chr5.3:25648238-25648257 | None:intergenic | 30.0% |
| !!! | CTGGGATTTTTTTGTAAACA+GGG | + | chr5.3:25648237-25648256 | None:intergenic | 30.0% |
| !!! | GATTTTTTTGTAAACAGGGT+TGG | + | chr5.3:25648233-25648252 | None:intergenic | 30.0% |
| !!! | TGGTGCAATTTTTTGCAATT+GGG | - | chr5.3:25649268-25649287 | MS.gene58537:intron | 30.0% |
| !!! | TTGGTGCAATTTTTTGCAAT+TGG | - | chr5.3:25649267-25649286 | MS.gene58537:intron | 30.0% |
| !!! | TTTTTTGGAGGAGAGAAAAT+TGG | - | chr5.3:25649427-25649446 | MS.gene58537:CDS | 30.0% |
| AAAATCCCAGTTCTCATTCA+TGG | - | chr5.3:25648247-25648266 | MS.gene58537:CDS | 35.0% | |
| AAAGTCCCATTGTAACTGTA+GGG | - | chr5.3:25648923-25648942 | MS.gene58537:intron | 35.0% | |
| ACCAGAAACTGATAAACTTG+TGG | - | chr5.3:25649600-25649619 | MS.gene58537:CDS | 35.0% | |
| AGAGAAATTTACTGGAGAGA+AGG | - | chr5.3:25649498-25649517 | MS.gene58537:CDS | 35.0% | |
| AGAGAGACTAAAAGCAGAAA+CGG | - | chr5.3:25648799-25648818 | MS.gene58537:intron | 35.0% | |
| CAAATTGCCCTTTCAATCAA+AGG | - | chr5.3:25648148-25648167 | MS.gene58537:CDS | 35.0% | |
| GAGCAAATAAACCATTTCGT+AGG | + | chr5.3:25649312-25649331 | None:intergenic | 35.0% | |
| GATCATAAGCATTTGAAGGA+AGG | + | chr5.3:25648351-25648370 | None:intergenic | 35.0% | |
| TAATACCTTGTCATCGATGT+AGG | + | chr5.3:25648398-25648417 | None:intergenic | 35.0% | |
| TATCTCCATGAATGAGAACT+GGG | + | chr5.3:25648255-25648274 | None:intergenic | 35.0% | |
| TCCACAAGTTTATCAGTTTC+TGG | + | chr5.3:25649604-25649623 | None:intergenic | 35.0% | |
| TGAAACAAAAACTCCAGCTT+TGG | - | chr5.3:25649528-25649547 | MS.gene58537:CDS | 35.0% | |
| TTAACCCCTACAGTTACAAT+GGG | + | chr5.3:25648931-25648950 | None:intergenic | 35.0% | |
| TTATCTCCATGAATGAGAAC+TGG | + | chr5.3:25648256-25648275 | None:intergenic | 35.0% | |
| ! | AATGACTTAAAGCTTTTGGG+TGG | - | chr5.3:25648097-25648116 | MS.gene58537:CDS | 35.0% |
| !! | ATGCTATTTGAGTTGGTTGA+GGG | - | chr5.3:25649471-25649490 | MS.gene58537:CDS | 35.0% |
| !! | CTTTTGGATGCTATTTGAGT+TGG | - | chr5.3:25649464-25649483 | MS.gene58537:CDS | 35.0% |
| !!! | GGCTTTGTTGATATTGCTTT+TGG | - | chr5.3:25649448-25649467 | MS.gene58537:CDS | 35.0% |
| AAGTCCCATTGTAACTGTAG+GGG | - | chr5.3:25648924-25648943 | MS.gene58537:intron | 40.0% | |
| AGCATTTGAAGGAAGGATTG+AGG | + | chr5.3:25648344-25648363 | None:intergenic | 40.0% | |
| CAAAGTCCCATTGTAACTGT+AGG | - | chr5.3:25648922-25648941 | MS.gene58537:intron | 40.0% | |
| CGAGCTAGAACATAACAACA+TGG | - | chr5.3:25648720-25648739 | MS.gene58537:intron | 40.0% | |
| CTGTACAATTCCCTACGAAA+TGG | - | chr5.3:25649298-25649317 | MS.gene58537:intron | 40.0% | |
| CTTAACCCCTACAGTTACAA+TGG | + | chr5.3:25648932-25648951 | None:intergenic | 40.0% | |
| GCATTTGAAGGAAGGATTGA+GGG | + | chr5.3:25648343-25648362 | None:intergenic | 40.0% | |
| GCTCGATCATAAGCATTTGA+AGG | + | chr5.3:25648355-25648374 | None:intergenic | 40.0% | |
| GGTCCTTCACTCATATTGAA+AGG | - | chr5.3:25648646-25648665 | MS.gene58537:intron | 40.0% | |
| TGCCCTTTCAATCAAAGGTT+TGG | - | chr5.3:25648153-25648172 | MS.gene58537:CDS | 40.0% | |
| ! | AAACTCCAGCTTTGGTGAAA+TGG | - | chr5.3:25649536-25649555 | MS.gene58537:CDS | 40.0% |
| ! | AACTCCAGCTTTGGTGAAAT+GGG | - | chr5.3:25649537-25649556 | MS.gene58537:CDS | 40.0% |
| ! | ATCGAGCCATTGCTAGATTT+TGG | - | chr5.3:25648368-25648387 | MS.gene58537:CDS | 40.0% |
| ! | TCGAGCCATTGCTAGATTTT+GGG | - | chr5.3:25648369-25648388 | MS.gene58537:CDS | 40.0% |
| !! | ACTTAAAGCTTTTGGGTGGT+TGG | - | chr5.3:25648101-25648120 | MS.gene58537:CDS | 40.0% |
| !! | GATGCTATTTGAGTTGGTTG+AGG | - | chr5.3:25649470-25649489 | MS.gene58537:CDS | 40.0% |
| !!! | AGTGGAGGAAAGGACTTTTT+TGG | - | chr5.3:25649412-25649431 | MS.gene58537:CDS | 40.0% |
| ATTTGTGCCCTCACTGCAAA+TGG | + | chr5.3:25648133-25648152 | None:intergenic | 45.0% | |
| GATGTGTTGAACAAGAGCAG+TGG | - | chr5.3:25649394-25649413 | MS.gene58537:CDS | 45.0% | |
| GGTAGCCCAAAATCTAGCAA+TGG | + | chr5.3:25648377-25648396 | None:intergenic | 45.0% | |
| GTTCAGTCCATTTGCAGTGA+GGG | - | chr5.3:25648123-25648142 | MS.gene58537:CDS | 45.0% | |
| !! | AACTAGCAGAAGTGCTTGTG+AGG | - | chr5.3:25649365-25649384 | MS.gene58537:CDS | 45.0% |
| !!! | GGAGGAAAGGACTTTTTTGG+AGG | - | chr5.3:25649415-25649434 | MS.gene58537:CDS | 45.0% |
| !! | AAATTTATTTATATAGAAAT+TGG | - | chr5.3:25648625-25648644 | MS.gene58537:intron | 5.0% |
| !!! | TAAAAATAAATAAATTTTTG+TGG | + | chr5.3:25648991-25649010 | None:intergenic | 5.0% |
| !!! | TCTATATAAATAAATTTTAA+AGG | + | chr5.3:25648622-25648641 | None:intergenic | 5.0% |
| AACAGCAGCAGCCATAGCTA+CGG | + | chr5.3:25649632-25649651 | None:intergenic | 50.0% | |
| GAACAAGAGCAGTGGAGGAA+AGG | - | chr5.3:25649402-25649421 | MS.gene58537:CDS | 50.0% | |
| GGCTACCTACATCGATGACA+AGG | - | chr5.3:25648390-25648409 | MS.gene58537:CDS | 50.0% | |
| GGTAGAATTCCCTTCACAGC+AGG | + | chr5.3:25649583-25649602 | None:intergenic | 50.0% | |
| GGTTCAGTCCATTTGCAGTG+AGG | - | chr5.3:25648122-25648141 | MS.gene58537:CDS | 50.0% | |
| GTGTTGAACAAGAGCAGTGG+AGG | - | chr5.3:25649397-25649416 | MS.gene58537:CDS | 50.0% | |
| TCAGCCCATTTCACCAAAGC+TGG | + | chr5.3:25649544-25649563 | None:intergenic | 50.0% | |
| TGTGGAGTATGCCGTAGCTA+TGG | - | chr5.3:25649618-25649637 | MS.gene58537:CDS | 50.0% | |
| !! | AGCAGAAGTGCTTGTGAGGT+TGG | - | chr5.3:25649369-25649388 | MS.gene58537:CDS | 50.0% |
| GCTGCTGATCCTGCTGTGAA+GGG | - | chr5.3:25649571-25649590 | MS.gene58537:CDS | 55.0% | |
| TGCTGCTGATCCTGCTGTGA+AGG | - | chr5.3:25649570-25649589 | MS.gene58537:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 25648088 | 25649660 | 25648088 | ID=MS.gene58537 |
| chr5.3 | mRNA | 25648088 | 25649660 | 25648088 | ID=MS.gene58537.t1;Parent=MS.gene58537 |
| chr5.3 | exon | 25649337 | 25649660 | 25649337 | ID=MS.gene58537.t1.exon1;Parent=MS.gene58537.t1 |
| chr5.3 | CDS | 25649337 | 25649660 | 25649337 | ID=cds.MS.gene58537.t1;Parent=MS.gene58537.t1 |
| chr5.3 | exon | 25648088 | 25648450 | 25648088 | ID=MS.gene58537.t1.exon2;Parent=MS.gene58537.t1 |
| chr5.3 | CDS | 25648088 | 25648450 | 25648088 | ID=cds.MS.gene58537.t1;Parent=MS.gene58537.t1 |
| Gene Sequence |
| Protein sequence |
