AlfalfaGEDB | MS.gene25859

M. sativa cultivar XinJiangDaYe / MS.gene25859

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25859.t1	XP_003601328.1	80.3	478	45	2	3	432	18	494	4.60E-224	786.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25859.t1	G3FIN8	50.2	472	182	5	5	427	10	477	4.1e-136	486.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25859.t1	G7IEP9	80.3	478	45	2	3	432	18	494	3.3e-224	786.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene25859	0.861064	1.33E-63	-1.69E-46
MS.gene049151	MS.gene25859	0.826713	2.33E-54	-1.69E-46
MS.gene049153	MS.gene25859	0.848802	4.86E-60	-1.69E-46
MS.gene049260	MS.gene25859	0.821203	4.58E-53	-1.69E-46
MS.gene049346	MS.gene25859	0.851598	8.00E-61	-1.69E-46
MS.gene049356	MS.gene25859	0.83588	1.30E-56	-1.69E-46
MS.gene049369	MS.gene25859	0.800958	1.13E-48	-1.69E-46
MS.gene049378	MS.gene25859	0.811633	6.35E-51	-1.69E-46
MS.gene049426	MS.gene25859	0.815098	1.10E-51	-1.69E-46
MS.gene049491	MS.gene25859	0.815468	9.11E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25859.t1	MTR_3g079480	80.335	478	45	2	3	432	18	494	0.0	775
MS.gene25859.t1	MTR_3g479520	72.917	480	81	2	1	432	10	488	0.0	722
MS.gene25859.t1	MTR_3g479490	72.025	479	85	2	1	431	1	478	0.0	711
MS.gene25859.t1	MTR_3g479470	56.813	477	158	2	3	432	10	485	0.0	528
MS.gene25859.t1	MTR_3g479610	70.846	319	44	2	162	432	1	318	2.58e-158	450
MS.gene25859.t1	MTR_5g464810	46.072	471	201	6	6	427	12	478	5.25e-147	427
MS.gene25859.t1	MTR_5g064240	46.072	471	201	6	6	427	12	478	5.25e-147	427
MS.gene25859.t1	MTR_0036s0220	45.763	472	203	6	5	427	11	478	3.30e-143	417
MS.gene25859.t1	MTR_5g464760	44.864	477	208	7	2	427	8	480	2.43e-141	413
MS.gene25859.t1	MTR_3g008010	44.118	476	213	5	2	427	6	478	2.41e-139	408

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25859.t1	AT1G22380	43.158	475	219	4	2	427	9	481	1.23e-139	409
MS.gene25859.t1	AT1G22360	42.495	473	223	4	3	427	7	478	1.12e-136	401
MS.gene25859.t1	AT1G22400	41.561	474	227	4	3	427	10	482	2.79e-134	395
MS.gene25859.t1	AT1G22340	40.756	476	234	2	3	430	10	485	4.22e-134	395
MS.gene25859.t1	AT1G22370	42.283	473	219	4	3	427	10	476	3.05e-129	382
MS.gene25859.t1	AT1G22360	41.866	461	231	5	3	427	7	466	5.05e-128	379
MS.gene25859.t1	AT1G78270	39.248	479	240	4	3	432	10	486	9.85e-119	355
MS.gene25859.t1	AT1G22370	36.842	304	143	3	172	427	4	306	5.95e-58	193
MS.gene25859.t1	AT2G36970	26.955	486	271	12	3	426	7	470	3.07e-53	185
MS.gene25859.t1	AT3G46660	30.453	486	245	16	1	426	6	458	1.15e-52	183

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Find 93 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTTGATAAAGTCTCT+TGG	0.482925	3.2:-69937336	MS.gene25859:CDS
AAATTAACCATGATGTTAAA+AGG	0.220501	3.2:-69934171	MS.gene25859:CDS
AACAAGTTTAGATTGGATCT+CGG	0.488590	3.2:-69934890	MS.gene25859:CDS
AACACATTTGAAGAATTGGA+AGG	0.580993	3.2:-69934742	MS.gene25859:CDS
AACCCAAACATATATGACAT+TGG	0.565039	3.2:-69934691	MS.gene25859:CDS
AAGTAGAAGCTGTCCAAAGT+TGG	0.540479	3.2:+69937058	None:intergenic
AATCAACACATTTGAAGAAT+TGG	0.298250	3.2:-69934746	MS.gene25859:CDS
AATGAGGCCAGATGTAGTAA+TGG	0.509860	3.2:-69934443	MS.gene25859:CDS
AATGGTACTAATACAACATG+TGG	0.596910	3.2:+69937456	None:intergenic
AATTAACCATGATGTTAAAA+GGG	0.491706	3.2:-69934170	MS.gene25859:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGTTTGATAAAGTCTCT+TGG	-	chr3.2:69934117-69934136	MS.gene25859:CDS	30.0%
AAATGTACACTACCACAAAT+TGG	+	chr3.2:69936262-69936281	None:intergenic	30.0%
AACAAGTTTAGATTGGATCT+CGG	-	chr3.2:69936563-69936582	MS.gene25859:intron	30.0%
AACACATTTGAAGAATTGGA+AGG	-	chr3.2:69936711-69936730	MS.gene25859:intron	30.0%
AACCCAAACATATATGACAT+TGG	-	chr3.2:69936762-69936781	MS.gene25859:intron	30.0%
AAGAAACTAGGTTATACGAA+CGG	+	chr3.2:69936230-69936249	None:intergenic	30.0%
AATGGTACTAATACAACATG+TGG	+	chr3.2:69934000-69934019	None:intergenic	30.0%
ACTTCATCTAGAAAATCTTG+TGG	+	chr3.2:69937056-69937075	None:intergenic	30.0%
AGCTCACCATTTACTAATAA+GGG	+	chr3.2:69935122-69935141	None:intergenic	30.0%
ATACAAGTAACTGGAATATG+AGG	+	chr3.2:69934312-69934331	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	69933985	69937490	69933985	ID=MS.gene25859
chr3.2	mRNA	69933985	69937490	69933985	ID=MS.gene25859.t1;Parent=MS.gene25859
chr3.2	exon	69936995	69937490	69936995	ID=MS.gene25859.t1.exon1;Parent=MS.gene25859.t1
chr3.2	CDS	69936995	69937490	69936995	ID=cds.MS.gene25859.t1;Parent=MS.gene25859.t1
chr3.2	exon	69934373	69934943	69934373	ID=MS.gene25859.t1.exon2;Parent=MS.gene25859.t1
chr3.2	CDS	69934373	69934943	69934373	ID=cds.MS.gene25859.t1;Parent=MS.gene25859.t1
chr3.2	exon	69933985	69934228	69933985	ID=MS.gene25859.t1.exon3;Parent=MS.gene25859.t1
chr3.2	CDS	69933985	69934228	69933985	ID=cds.MS.gene25859.t1;Parent=MS.gene25859.t1

Gene Sequence

>MS.gene25859

ATGGACCAAAAGCCACATGTTGTATTAGTACCATTTCCAGCACAAGGTCATGTGAACCCTTTCATGCAACTAGCCAAACTCCTACGTTGCAACGGTTTTCACATAACCTTTGTGAACACTGAATTCAACCACAAACGTTTGATAAAGTCTCTTGGAGCTGACTTTGTTAAGGGTCTACCTGATTTTCAATTTGAGACCATACCTGATGGTTTACCAGAATCAGATAAAGATGCAACACAGGATGTTCTAACGTTGTGGGATGCAACTAGAAAATTTTTTTATGCTCCTTTCAAAGAGCTCGTGATTAAGCTCAACACTTCATCACCTCATATTCCAGTTACTTGTATAATTGCTGATGGCAATTATGACTTTGCTGGAAGAGTGGCTAAGGATTTGGGCATTCGAGAGATCCAACTTTGGACAGCTTCTACTTGTGGGTTTGTGGGGTATTTGCAATTCGAGGAGCTTGTCAAAAGAGGAATTCTTCCATTCAAAGGTAAATTAAACCGATTTTTTTTTCTCTATGTTTCGTAACAAGTTTTTTTTTTATTAAATATAATGTTTTAAAATTATCCTATTTATAATATATTTTTTTTAGGCAAAAGAGAAACTATATTAAATAAAAAGAAAGAAATACAAAGATTGAGGGACATGATACCTGACCCAGGAAAACTCAAACGAGAATACGACGTATCGTGGTTTTGCAGACGTTAAATTTTGCAACTTCAATTAATTCGTGATGAAATTAGTATATGATCCACTTATGACTATTATAATTAAAAAAAATAACTTTTTAGATATATTAAATAACATATATTTATAATATATAATATAGATCAGATATATCAATTATTTAATAAATTTAAAAAATAATCTTTTTTGTTTATAACATTGATTGTAAGAAGTATTGTGCAGCAGATTCATACTCAACGTACAATCTTCGATGCTATGTCATTTTATAATTCAATTATGTTAAATTTACTTAAAATTTTAAAAAAAAATTCTTCTAAAGAGTATTGGTATCTAACTAATCTCAAAAGTACCTAAGAATGTTCCAAAAATAATTTATTTATATTTTCTTTCACTTATAATCTAATGAGATGAAGTACTTAAATAACATGAAAAAAATTCACACCCTTATTAGTAAATGGTGAGCTAATAAATGGGATAGACACTGGAACTAGCCAAATGAGTCAACAAGTAGTTCAAATCTTCCTTAAAAAAAAAGTAGTTCAAATCGGATTCTTTGTGGTCAATGTTTTTATACATTCATAAAATTCATGGTCATTGAGTCGCACGGTCGAAAATTCAATACATATTTTTATTTATATTTTAATAAAAAAATGTTGAATTTAAAATATAATTTGTCTAATCTTGATTCAACAATTTCAATTATTGTTTTCTTTTGTCTTAACCCCTTTCGGTTTGTAGAAGAATGTGGTTTTGTTAATCCATAATTCTACATAAAATAAGTAAAATTTAATAAATAATTTTTCATTTAAAAATCGAACTCTATTCTTCTAAATAATTATTTTTTATTGGAGATCAATATCATTTAAAGATAGTAACTTAATTAACAATCACAATTATATTAAGAAAAATGATAACAATTGTATATCCAATATATTAAAACATGAAAAAACAACTTTTTCTACATAAATTTTATCAATTGTTTTCAATTTTAAATCTTTAGTAAGTGTCCGTGTCCTAGAGACATAACACTTGACGGATGCCAATCATGGACCCTAGACATAGTTGTCACTTGCCAAGGTACCAACAAAAATGTAGTGGCCACAGAACATGTCTTCTAAATCCAAGAAGTAGCTAAACTAAACTATTGCTCACATACTTCTCCATCGGATGAATCATAACGTTGCTTCATATAAGTATTTTATTAAACAAATGAAAATGACATTAGCACAGAGGCATATTCTAATCATATCTAATCATATTCTTTTTTTTTTTGACAAAATATCTAATCATATTCTAATCGTTAATGCGATATGTGCACTATTTACGTAATATATTCTAATCATTTTTTTCACTGTAATATGAAGATAAATGATTGATATATTAGATGTTGTTAGATTTATTTCGATAAATATTTTTAAAATATTAAATTTTTAATGCGATATGAATATTTAGGTATCTACCTTTATTTCTTTATTTTAGTATACTTTAATTAGTTCATAGAAAAAATATATATTCTATTTTTGGCGCTTGATAGGATAAGTTTTTAAATCCGTTCGTATAACCTAGTTTCTTTTGTTAGAGCCAATTTGTGGTAGTGTACATTTTCTTTATTAAAACAACAAAATATACAATTTATTAATATTGAATTTAATTTGCATACACCGTCAGCGTGGATAGTTTTTAAACTGTAAATTAATTATAATTGTCAAATTATTAAAAATGTTTGATTTTTTATCATAATCACTTCTAAATTCACACACATGATCGATTGTAGACATCGTTTCGCTTATAAAAAACTATTATTTCATAATCATATTTTGAAACTTGAGTAACTTACTTTTGTAAAATTATTAGATGAAAATTTTATTGCGGATGGCACTTTGGAAACAAGTTTAGATTGGATCTCGGGAATGAAAGATATTAGACTAAAAGACCTTCCAAGCTTCATAAGAATCACAGATCTTAATGATGTAATGTTTAATTTCCAAGGTTCTAAAGCACAAAATTGTTTAAGATCATCAATGATTATAATCAACACATTTGAAGAATTGGAAGGTGAAGCACTTGACACCCTTAGGGCCAAAAACCCAAACATATATGACATTGGTCCACTTCACATGCTTGGTAGGCACTTTCCTGAGATGGAACATGGTTTTACGGCAAGTGGTTCGAGTTTATGGAAATCTGACATAGAATGCATAACATGGTTGAATAGATGGAAACCTTGCTCAGTCCTATATGTTAATTATGGAAGTGTAACTGTTATGACTGATCACCACTTGAAAGAATTTGCATGGGGAATAGCAAATAGTAAGTTACCGTTTTTATGGATAATGAGGCCAGATGTAGTAATGGGTGAAGAAACTTCATCTTTGCCACAAGATTTTCTAGATGAAGTTAAGGATAGAGGATACATAACTAGTTGGTGCATGCAAGACCAAGTTCTTGATCATCCATCAGTTGGAGGGTTCCTGACTCATTGTGGTTGGAATTCTACACTTGAAACTATTTCAGCAGGTGTGCCTACTATTTGTTGGCCTTTCTTTGGTGAGCAACAAACAAATTGTAGGTATTTATGCAACAACACTTGGAAAATAGGGATGGAAATTAACCATGATGTTAAAAGGGAAGAGATAACCAAACTTGTGATGGAAATGATGGAAGGAGAAAAAGGAAAAGAGATGAGACAAAACTGCTTGGAGTGGAAGAAGAAAGCTACAGATGCTACTAATGTTGGAGGATCATCATACAATAATTTCTATAATTTAATTAAAGAGCTTCTTCATCACAATGCTATTTCAGTTATATTATAA

Protein sequence

>MS.gene25859.t1

MDQKPHVVLVPFPAQGHVNPFMQLAKLLRCNGFHITFVNTEFNHKRLIKSLGADFVKGLPDFQFETIPDGLPESDKDATQDVLTLWDATRKFFYAPFKELVIKLNTSSPHIPVTCIIADGNYDFAGRVAKDLGIREIQLWTASTCGFVGYLQFEELVKRGILPFKDENFIADGTLETSLDWISGMKDIRLKDLPSFIRITDLNDVMFNFQGSKAQNCLRSSMIIINTFEELEGEALDTLRAKNPNIYDIGPLHMLGRHFPEMEHGFTASGSSLWKSDIECITWLNRWKPCSVLYVNYGSVTVMTDHHLKEFAWGIANSKLPFLWIMRPDVVMGEETSSLPQDFLDEVKDRGYITSWYLCNNTWKIGMEINHDVKREEITKLVMEMMEGEKGKEMRQNCLEWKKKATDATNVGGSSYNNFYNLIKELLHHNAISVIL