Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056443.t1 | XP_013446172.1 | 100 | 64 | 0 | 0 | 1 | 64 | 1 | 64 | 1.70E-29 | 137.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056443.t1 | Q93XX8 | 81.2 | 64 | 12 | 0 | 1 | 64 | 1 | 64 | 4.0e-24 | 111.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056443.t1 | A0A072TRQ0 | 100.0 | 64 | 0 | 0 | 1 | 64 | 1 | 64 | 1.2e-29 | 137.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056443 | MS.gene067951 | 0.814639 | 1.39E-51 | -1.69E-46 |
| MS.gene056443 | MS.gene97932 | 0.813337 | 2.69E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99744 | MS.gene056443 | PPI |
| MS.gene056443 | MS.gene033017 | PPI |
| MS.gene056443 | MS.gene067809 | PPI |
| MS.gene029242 | MS.gene056443 | PPI |
| MS.gene68979 | MS.gene056443 | PPI |
| MS.gene056443 | MS.gene98436 | PPI |
| MS.gene056443 | MS.gene046040 | PPI |
| MS.gene056443 | MS.gene057730 | PPI |
| MS.gene064180 | MS.gene056443 | PPI |
| MS.gene056443 | MS.gene038800 | PPI |
| MS.gene056443 | MS.gene45344 | PPI |
| MS.gene056443 | MS.gene028023 | PPI |
| MS.gene056443 | MS.gene001986 | PPI |
| MS.gene056443 | MS.gene003501 | PPI |
| MS.gene95758 | MS.gene056443 | PPI |
| MS.gene31515 | MS.gene056443 | PPI |
| MS.gene056443 | MS.gene000714 | PPI |
| MS.gene059422 | MS.gene056443 | PPI |
| MS.gene056443 | MS.gene41916 | PPI |
| MS.gene08205 | MS.gene056443 | PPI |
| MS.gene056443 | MS.gene72894 | PPI |
| MS.gene90954 | MS.gene056443 | PPI |
| MS.gene056443 | MS.gene044498 | PPI |
| MS.gene056443 | MS.gene90957 | PPI |
| MS.gene056443 | MS.gene52097 | PPI |
| MS.gene037324 | MS.gene056443 | PPI |
| MS.gene51868 | MS.gene056443 | PPI |
| MS.gene056443 | MS.gene054186 | PPI |
| MS.gene056443 | MS.gene056257 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056443.t1 | MTR_8g069770 | 100.000 | 64 | 0 | 0 | 1 | 64 | 1 | 64 | 4.79e-44 | 135 |
| MS.gene056443.t1 | MTR_7g097110 | 85.938 | 64 | 9 | 0 | 1 | 64 | 1 | 64 | 7.70e-36 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056443.t1 | AT2G20490 | 81.250 | 64 | 12 | 0 | 1 | 64 | 1 | 64 | 1.85e-34 | 111 |
| MS.gene056443.t1 | AT2G20490 | 81.250 | 64 | 12 | 0 | 1 | 64 | 1 | 64 | 1.85e-34 | 111 |
| MS.gene056443.t1 | AT2G20490 | 79.688 | 64 | 12 | 1 | 1 | 64 | 1 | 63 | 5.32e-32 | 105 |
Find 16 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGTTACATAAATGATAA+TGG | 0.389907 | 8.2:-33288638 | MS.gene056443:CDS |
| GAAGGAATCACCACTGGGTT+CGG | 0.421070 | 8.2:-33287440 | MS.gene056443:CDS |
| GTGCGTCTGAAGAAGCGCTT+TGG | 0.482078 | 8.2:-33286412 | MS.gene056443:CDS |
| TTCCGAGGTGGCTGCTGAGT+TGG | 0.491045 | 8.2:+33286382 | None:intergenic |
| ATGATAAATTCTCAGACCAT+AGG | 0.495274 | 8.2:-33286435 | MS.gene056443:CDS |
| GCTTCTTCAGACGCACCCTA+TGG | 0.540494 | 8.2:+33286419 | None:intergenic |
| TGGTCTGAGAATTTATCATC+GGG | 0.555795 | 8.2:+33286439 | None:intergenic |
| TGATAAATTCTCAGACCATA+GGG | 0.566431 | 8.2:-33286434 | MS.gene056443:CDS |
| ATGGTCTGAGAATTTATCAT+CGG | 0.567138 | 8.2:+33286438 | None:intergenic |
| TGCCAACTCAGCAGCCACCT+CGG | 0.572303 | 8.2:-33286384 | MS.gene056443:CDS |
| TTTCAGAAGGAATCACCACT+GGG | 0.620010 | 8.2:-33287445 | MS.gene056443:intron |
| GACTCTGTTGCCGAACCCAG+TGG | 0.655330 | 8.2:+33287430 | None:intergenic |
| CTATCTCAGTACTTCCGAGG+TGG | 0.658485 | 8.2:+33286370 | None:intergenic |
| GCAACAGAGTCAGCTCACCC+AGG | 0.664796 | 8.2:-33287418 | MS.gene056443:intron |
| TCACTATCTCAGTACTTCCG+AGG | 0.676583 | 8.2:+33286367 | None:intergenic |
| TGACAAAGTTTACACTACCA+AGG | 0.686778 | 8.2:-33288615 | MS.gene056443:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATCTTATAGTTTATA+CGG | - | chr8.2:33286682-33286701 | MS.gene056443:intron | 15.0% |
| !! | ATATATTTCACTACAAAAAA+GGG | + | chr8.2:33287232-33287251 | None:intergenic | 15.0% |
| !!! | ATTATGTAAATGGTTATTTT+AGG | - | chr8.2:33287528-33287547 | MS.gene056443:intron | 15.0% |
| !!! | TAGTGTTTAAAATAGAAATA+GGG | + | chr8.2:33286443-33286462 | None:intergenic | 15.0% |
| !!! | TTATGTAAATGGTTATTTTA+GGG | - | chr8.2:33287529-33287548 | MS.gene056443:intron | 15.0% |
| !!! | TTTTTTTTTTGTCTAAAACT+CGG | + | chr8.2:33286597-33286616 | None:intergenic | 15.0% |
| !! | GATATATTTCACTACAAAAA+AGG | + | chr8.2:33287233-33287252 | None:intergenic | 20.0% |
| !! | TATATTTCACTACAAAAAAG+GGG | + | chr8.2:33287231-33287250 | None:intergenic | 20.0% |
| !! | TGAGTTAAAACTTAAAACTA+AGG | + | chr8.2:33288429-33288448 | None:intergenic | 20.0% |
| !!! | ATCAGTCTATATATTTTACT+TGG | - | chr8.2:33288460-33288479 | MS.gene056443:intron | 20.0% |
| !!! | ATTAGGTCTAATTTTAAAGA+TGG | - | chr8.2:33286882-33286901 | MS.gene056443:intron | 20.0% |
| !!! | GTAGTGTTTAAAATAGAAAT+AGG | + | chr8.2:33286444-33286463 | None:intergenic | 20.0% |
| !!! | TATGTAAATGGTTATTTTAG+GGG | - | chr8.2:33287530-33287549 | MS.gene056443:intron | 20.0% |
| !!! | TTAGGTCTAATTTTAAAGAT+GGG | - | chr8.2:33286883-33286902 | MS.gene056443:intron | 20.0% |
| !!! | TTTTCTTTATTTGAGCTTAA+GGG | - | chr8.2:33286517-33286536 | MS.gene056443:intron | 20.0% |
| !!! | TTTTTCTTTATTTGAGCTTA+AGG | - | chr8.2:33286516-33286535 | MS.gene056443:intron | 20.0% |
| ! | AATAGGGATAATTATTACCT+TGG | + | chr8.2:33286427-33286446 | None:intergenic | 25.0% |
| ! | ACCATAAAATGCTATGTATA+TGG | - | chr8.2:33287265-33287284 | MS.gene056443:intron | 25.0% |
| ! | ACGCTTTATCATTATGTAAA+TGG | - | chr8.2:33287518-33287537 | MS.gene056443:intron | 25.0% |
| ! | CAGTGTTACATAAATGATAA+TGG | - | chr8.2:33286384-33286403 | MS.gene056443:CDS | 25.0% |
| ! | CCATTTCAAAGCAAAAAAAT+GGG | - | chr8.2:33287662-33287681 | MS.gene056443:intron | 25.0% |
| ! | CTTATAGTTTATACGGAAAT+AGG | - | chr8.2:33286689-33286708 | MS.gene056443:intron | 25.0% |
| ! | CTTTGATAAAAATACAGGTT+GGG | + | chr8.2:33287895-33287914 | None:intergenic | 25.0% |
| ! | GTAAATTCAGGATAATAAAG+TGG | - | chr8.2:33287626-33287645 | MS.gene056443:intron | 25.0% |
| ! | TAATAAGTGAATCTGTGATT+AGG | - | chr8.2:33286865-33286884 | MS.gene056443:intron | 25.0% |
| ! | TCCATTTCAAAGCAAAAAAA+TGG | - | chr8.2:33287661-33287680 | MS.gene056443:intron | 25.0% |
| ! | TTATTATCCTGAATTTACCT+GGG | + | chr8.2:33287624-33287643 | None:intergenic | 25.0% |
| ! | TTTATTATCCTGAATTTACC+TGG | + | chr8.2:33287625-33287644 | None:intergenic | 25.0% |
| !! | TCCATATACATAGCATTTTA+TGG | + | chr8.2:33287269-33287288 | None:intergenic | 25.0% |
| !!! | AGTATAAGAATTTTGAGACA+TGG | - | chr8.2:33287308-33287327 | MS.gene056443:intron | 25.0% |
| !!! | ATAAAGCGTTTTCTTTTCTT+GGG | + | chr8.2:33287507-33287526 | None:intergenic | 25.0% |
| !!! | ATTTTTTCATGGAGATAAAG+AGG | - | chr8.2:33287176-33287195 | MS.gene056443:intron | 25.0% |
| !!! | GGAAGAAGTATATTTTTTCA+TGG | - | chr8.2:33287165-33287184 | MS.gene056443:intron | 25.0% |
| !!! | GTATAAGAATTTTGAGACAT+GGG | - | chr8.2:33287309-33287328 | MS.gene056443:intron | 25.0% |
| !!! | GTTTTTGGTTTATTGAATTG+TGG | - | chr8.2:33287774-33287793 | MS.gene056443:intron | 25.0% |
| !!! | TTTGCTTCATTTAGAGTTTT+TGG | - | chr8.2:33287759-33287778 | MS.gene056443:intron | 25.0% |
| !!! | TTTTTTCATGGAGATAAAGA+GGG | - | chr8.2:33287177-33287196 | MS.gene056443:intron | 25.0% |
| AACCAAAATCAGTGAAGTAA+TGG | + | chr8.2:33288514-33288533 | None:intergenic | 30.0% | |
| AATCATCTTCACATTTAGTG+TGG | - | chr8.2:33287411-33287430 | MS.gene056443:intron | 30.0% | |
| ATGATAAATTCTCAGACCAT+AGG | - | chr8.2:33288587-33288606 | MS.gene056443:intron | 30.0% | |
| ATGGTCTGAGAATTTATCAT+CGG | + | chr8.2:33288587-33288606 | None:intergenic | 30.0% | |
| ATTCATCAACAACTGATCTA+TGG | - | chr8.2:33288358-33288377 | MS.gene056443:intron | 30.0% | |
| CTTATTCGTATAAGTTCTCA+AGG | - | chr8.2:33286649-33286668 | MS.gene056443:intron | 30.0% | |
| GCTTTGATAAAAATACAGGT+TGG | + | chr8.2:33287896-33287915 | None:intergenic | 30.0% | |
| TAAATGAAGCAAACACATCA+TGG | + | chr8.2:33287752-33287771 | None:intergenic | 30.0% | |
| TGATAAATTCTCAGACCATA+GGG | - | chr8.2:33288588-33288607 | MS.gene056443:intron | 30.0% | |
| TGTTTGAAAAGTCAAAAGAC+CGG | + | chr8.2:33287961-33287980 | None:intergenic | 30.0% | |
| TTGCAATATAACAGATTCAG+AGG | - | chr8.2:33288263-33288282 | MS.gene056443:intron | 30.0% | |
| TTGGTTTATTGAATTGTGGT+GGG | - | chr8.2:33287778-33287797 | MS.gene056443:intron | 30.0% | |
| ! | GATCAAACTGTTAGCTTAAT+GGG | + | chr8.2:33288018-33288037 | None:intergenic | 30.0% |
| ! | TATTCTTTTGCACTCAGTAT+GGG | + | chr8.2:33288185-33288204 | None:intergenic | 30.0% |
| ! | TGATCAAACTGTTAGCTTAA+TGG | + | chr8.2:33288019-33288038 | None:intergenic | 30.0% |
| ! | TGCAGCTTTGATAAAAATAC+AGG | + | chr8.2:33287900-33287919 | None:intergenic | 30.0% |
| ! | TTATTCTTTTGCACTCAGTA+TGG | + | chr8.2:33288186-33288205 | None:intergenic | 30.0% |
| ! | TTTGGTTTATTGAATTGTGG+TGG | - | chr8.2:33287777-33287796 | MS.gene056443:intron | 30.0% |
| !! | GATAAAGCGTTTTCTTTTCT+TGG | + | chr8.2:33287508-33287527 | None:intergenic | 30.0% |
| !!! | CCCATTTTTTTGCTTTGAAA+TGG | + | chr8.2:33287665-33287684 | None:intergenic | 30.0% |
| !!! | TATGGTTTTGATTTCCACAT+GGG | - | chr8.2:33288376-33288395 | MS.gene056443:intron | 30.0% |
| AAAGCGGAAGCTAAAACAAA+GGG | + | chr8.2:33287469-33287488 | None:intergenic | 35.0% | |
| CAGTTTGATCAATCCTGTTT+AGG | - | chr8.2:33288028-33288047 | MS.gene056443:intron | 35.0% | |
| CATGTAAGTAAGTCCTAAAC+AGG | + | chr8.2:33288044-33288063 | None:intergenic | 35.0% | |
| CGTTGTTACATATGTAGCAT+TGG | + | chr8.2:33287109-33287128 | None:intergenic | 35.0% | |
| CTCATGAACCAGAATAACTT+GGG | + | chr8.2:33286809-33286828 | None:intergenic | 35.0% | |
| GACAGAAAGTGATCATAAAG+CGG | + | chr8.2:33287485-33287504 | None:intergenic | 35.0% | |
| TAAAACTCGGTATACTGCAA+AGG | + | chr8.2:33286584-33286603 | None:intergenic | 35.0% | |
| TAAAGCGGAAGCTAAAACAA+AGG | + | chr8.2:33287470-33287489 | None:intergenic | 35.0% | |
| TATCTGCATTTGCCTTTGAA+AGG | - | chr8.2:33288150-33288169 | MS.gene056443:intron | 35.0% | |
| TCCAATACCATTGAGAAACA+TGG | + | chr8.2:33288338-33288357 | None:intergenic | 35.0% | |
| TCTCATGAACCAGAATAACT+TGG | + | chr8.2:33286810-33286829 | None:intergenic | 35.0% | |
| TGACAAAGTTTACACTACCA+AGG | - | chr8.2:33286407-33286426 | MS.gene056443:CDS | 35.0% | |
| TGGTCTGAGAATTTATCATC+GGG | + | chr8.2:33288586-33288605 | None:intergenic | 35.0% | |
| TGGTTTATTGAATTGTGGTG+GGG | - | chr8.2:33287779-33287798 | MS.gene056443:intron | 35.0% | |
| TTATATTGCAACCGCAGTTA+CGG | + | chr8.2:33288254-33288273 | None:intergenic | 35.0% | |
| TTCAGACAAGCTTGTCAATT+TGG | + | chr8.2:33287387-33287406 | None:intergenic | 35.0% | |
| ! | AGTAAGCTGATAGTGAAACA+GGG | + | chr8.2:33288120-33288139 | None:intergenic | 35.0% |
| ! | CATAGCATTTTATGGTCTCT+TGG | + | chr8.2:33287261-33287280 | None:intergenic | 35.0% |
| ! | TGAGCTTTTGCATAGACTTT+CGG | - | chr8.2:33287924-33287943 | MS.gene056443:intron | 35.0% |
| ! | TGCTTTTGCGTAAGCTATTT+TGG | + | chr8.2:33286739-33286758 | None:intergenic | 35.0% |
| !! | ATTGGATCTATCGGATTAGT+TGG | - | chr8.2:33286557-33286576 | MS.gene056443:intron | 35.0% |
| !!! | AGTTGCTCTTTGTTTTCAGA+AGG | - | chr8.2:33287564-33287583 | MS.gene056443:intron | 35.0% |
| !!! | CACCATTACTTCACTGATTT+TGG | - | chr8.2:33288509-33288528 | MS.gene056443:intron | 35.0% |
| !!! | CTATGGTTTTGATTTCCACA+TGG | - | chr8.2:33288375-33288394 | MS.gene056443:intron | 35.0% |
| AAACAGGACCCAAGTTATTC+TGG | - | chr8.2:33286798-33286817 | MS.gene056443:intron | 40.0% | |
| AAATGCAATTGTGGCCACAT+TGG | - | chr8.2:33288312-33288331 | MS.gene056443:intron | 40.0% | |
| AAGCGGAAGCTAAAACAAAG+GGG | + | chr8.2:33287468-33287487 | None:intergenic | 40.0% | |
| ACATTGGCCATGTTTCTCAA+TGG | - | chr8.2:33288328-33288347 | MS.gene056443:intron | 40.0% | |
| AGAATAACTTGGGTCCTGTT+TGG | + | chr8.2:33286799-33286818 | None:intergenic | 40.0% | |
| ATTCGCTGTCTAACACATGT+TGG | - | chr8.2:33286991-33287010 | MS.gene056443:intron | 40.0% | |
| ATTGAGAAACATGGCCAATG+TGG | + | chr8.2:33288329-33288348 | None:intergenic | 40.0% | |
| CGACATCACAAATGCAATTG+TGG | - | chr8.2:33288303-33288322 | MS.gene056443:intron | 40.0% | |
| CTGCAAATGTGTATCCAAAC+AGG | - | chr8.2:33286782-33286801 | MS.gene056443:intron | 40.0% | |
| CTGTTTCACTATCAGCTTAC+TGG | - | chr8.2:33288119-33288138 | MS.gene056443:intron | 40.0% | |
| GACATACAGAGTGTACAGTT+AGG | + | chr8.2:33287809-33287828 | None:intergenic | 40.0% | |
| GCCATGTTTCTCAATGGTAT+TGG | - | chr8.2:33288334-33288353 | MS.gene056443:intron | 40.0% | |
| GGTTTATTGAATTGTGGTGG+GGG | - | chr8.2:33287780-33287799 | MS.gene056443:intron | 40.0% | |
| GTCTAACACATGTTGGTATC+AGG | - | chr8.2:33286998-33287017 | MS.gene056443:intron | 40.0% | |
| TGTTGCCACAATATGACTGT+CGG | - | chr8.2:33287144-33287163 | MS.gene056443:intron | 40.0% | |
| TTACCAAGAACACGGTAAGT+GGG | + | chr8.2:33287836-33287855 | None:intergenic | 40.0% | |
| TTCTTCCGACAGTCATATTG+TGG | + | chr8.2:33287152-33287171 | None:intergenic | 40.0% | |
| TTTCAGAAGGAATCACCACT+GGG | - | chr8.2:33287577-33287596 | MS.gene056443:intron | 40.0% | |
| ! | AAAGATGGGTTTGCACTGAT+AGG | - | chr8.2:33286897-33286916 | MS.gene056443:intron | 40.0% |
| ! | AGCTTAAGGGCATGTTTGAA+CGG | - | chr8.2:33286530-33286549 | MS.gene056443:intron | 40.0% |
| ! | AGTTCTGATGTTGCTGTATG+TGG | - | chr8.2:33287722-33287741 | MS.gene056443:intron | 40.0% |
| ! | ATACAGGTTGGGATCATATC+AGG | + | chr8.2:33287884-33287903 | None:intergenic | 40.0% |
| ! | CAGTAAGCTGATAGTGAAAC+AGG | + | chr8.2:33288121-33288140 | None:intergenic | 40.0% |
| ! | TTTTCAGAAGGAATCACCAC+TGG | - | chr8.2:33287576-33287595 | MS.gene056443:intron | 40.0% |
| !! | CAACATTGACTCATGGACAT+TGG | + | chr8.2:33287072-33287091 | None:intergenic | 40.0% |
| !! | GTTATTCTGGTTCATGAGAG+AGG | - | chr8.2:33286811-33286830 | MS.gene056443:intron | 40.0% |
| AACGGTGGGATTGGATCTAT+CGG | - | chr8.2:33286548-33286567 | MS.gene056443:intron | 45.0% | |
| AGCGGAAGCTAAAACAAAGG+GGG | + | chr8.2:33287467-33287486 | None:intergenic | 45.0% | |
| CCATGAGTCAATGTTGTGTC+TGG | - | chr8.2:33287076-33287095 | MS.gene056443:intron | 45.0% | |
| CGAGTGTGTTACCAAGAACA+CGG | + | chr8.2:33287844-33287863 | None:intergenic | 45.0% | |
| GCGAATACGCCTTCATTCTA+AGG | + | chr8.2:33286977-33286996 | None:intergenic | 45.0% | |
| GGGTACTTGCTTCCTTTCAA+AGG | + | chr8.2:33288165-33288184 | None:intergenic | 45.0% | |
| GTTACCAAGAACACGGTAAG+TGG | + | chr8.2:33287837-33287856 | None:intergenic | 45.0% | |
| TACGGTCGTAGAAGGGTTTA+GGG | + | chr8.2:33288236-33288255 | None:intergenic | 45.0% | |
| TTACGGTCGTAGAAGGGTTT+AGG | + | chr8.2:33288237-33288256 | None:intergenic | 45.0% | |
| TTGAGACATGGGCAGAATGT+TGG | - | chr8.2:33287320-33287339 | MS.gene056443:intron | 45.0% | |
| ! | GCACTGACACCTTAGAATGA+AGG | - | chr8.2:33286965-33286984 | MS.gene056443:intron | 45.0% |
| ! | TAAGGGCATGTTTGAACGGT+GGG | - | chr8.2:33286534-33286553 | MS.gene056443:intron | 45.0% |
| ! | TTAAGGGCATGTTTGAACGG+TGG | - | chr8.2:33286533-33286552 | MS.gene056443:intron | 45.0% |
| !! | CCAGACACAACATTGACTCA+TGG | + | chr8.2:33287079-33287098 | None:intergenic | 45.0% |
| !! | TATATGCATCGACTCCCATG+TGG | + | chr8.2:33288393-33288412 | None:intergenic | 45.0% |
| ACTTTCGGTACCACTATCGC+CGG | - | chr8.2:33287939-33287958 | MS.gene056443:intron | 50.0% | |
| AGTCAAAAGACCGGCGATAG+TGG | + | chr8.2:33287952-33287971 | None:intergenic | 50.0% | |
| CAGCTCACCCAGGTAAATTC+AGG | - | chr8.2:33287614-33287633 | MS.gene056443:intron | 50.0% | |
| GAACCCACTTACCGTGTTCT+TGG | - | chr8.2:33287830-33287849 | MS.gene056443:intron | 50.0% | |
| GAAGGAATCACCACTGGGTT+CGG | - | chr8.2:33287582-33287601 | MS.gene056443:intron | 50.0% | |
| GCATGTTTGAACGGTGGGAT+TGG | - | chr8.2:33286539-33286558 | MS.gene056443:intron | 50.0% | |
| TGGTATCAGGCACAAACACG+TGG | - | chr8.2:33287011-33287030 | MS.gene056443:intron | 50.0% | |
| ! | CTAAGGTGTCAGTGCTACGT+AGG | + | chr8.2:33286960-33286979 | None:intergenic | 50.0% |
| ACCGCAGTTACGGTCGTAGA+AGG | + | chr8.2:33288244-33288263 | None:intergenic | 55.0% | |
| CCCTTCTACGACCGTAACTG+CGG | - | chr8.2:33288240-33288259 | MS.gene056443:intron | 55.0% | |
| CCGCAGTTACGGTCGTAGAA+GGG | + | chr8.2:33288243-33288262 | None:intergenic | 55.0% | |
| GCTTCTTCAGACGCACCCTA+TGG | + | chr8.2:33288606-33288625 | None:intergenic | 55.0% | |
| !! | GTGCGTCTGAAGAAGCGCTT+TGG | - | chr8.2:33288610-33288629 | MS.gene056443:intron | 55.0% |
| GACTCTGTTGCCGAACCCAG+TGG | + | chr8.2:33287595-33287614 | None:intergenic | 60.0% | |
| GCAACAGAGTCAGCTCACCC+AGG | - | chr8.2:33287604-33287623 | MS.gene056443:intron | 60.0% | |
| TGCCAACTCAGCAGCCACCT+CGG | - | chr8.2:33288638-33288657 | MS.gene056443:CDS | 60.0% | |
| TTCCGAGGTGGCTGCTGAGT+TGG | + | chr8.2:33288643-33288662 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 33286375 | 33288669 | 33286375 | ID=MS.gene056443 |
| chr8.2 | mRNA | 33286375 | 33288669 | 33286375 | ID=MS.gene056443.t1;Parent=MS.gene056443 |
| chr8.2 | exon | 33288616 | 33288669 | 33288616 | ID=MS.gene056443.t1.exon1;Parent=MS.gene056443.t1 |
| chr8.2 | CDS | 33288616 | 33288669 | 33288616 | ID=cds.MS.gene056443.t1;Parent=MS.gene056443.t1 |
| chr8.2 | exon | 33287419 | 33287461 | 33287419 | ID=MS.gene056443.t1.exon2;Parent=MS.gene056443.t1 |
| chr8.2 | CDS | 33287419 | 33287461 | 33287419 | ID=cds.MS.gene056443.t1;Parent=MS.gene056443.t1 |
| chr8.2 | exon | 33286375 | 33286472 | 33286375 | ID=MS.gene056443.t1.exon3;Parent=MS.gene056443.t1 |
| chr8.2 | CDS | 33286375 | 33286472 | 33286375 | ID=cds.MS.gene056443.t1;Parent=MS.gene056443.t1 |
| Gene Sequence |
| Protein sequence |
