AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78818


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78818.t1 MTR_4g022290 87.277 448 50 3 1 446 1 443 0.0 788
MS.gene78818.t1 MTR_4g094828 81.798 456 63 5 1 445 1 447 0.0 753
MS.gene78818.t1 MTR_8g079710 75.442 452 96 9 1 446 1 443 0.0 664
MS.gene78818.t1 MTR_4g094835 54.945 455 181 11 1 444 1 442 1.94e-169 484
MS.gene78818.t1 MTR_4g094842 53.261 460 177 9 1 441 1 441 1.44e-161 464
MS.gene78818.t1 MTR_0190s0020 50.000 456 200 8 1 445 1 439 6.76e-152 439
MS.gene78818.t1 MTR_4g094838 51.556 450 179 10 4 440 1 424 1.78e-148 430
MS.gene78818.t1 MTR_4g022800 50.538 465 184 11 1 445 1 439 2.41e-148 430
MS.gene78818.t1 MTR_3g026310 49.895 477 185 13 1 451 1 449 1.65e-147 428
MS.gene78818.t1 MTR_4g022720 50.655 458 187 11 1 445 1 432 1.26e-146 426
MS.gene78818.t1 MTR_4g022825 50.324 463 186 12 1 445 1 437 2.32e-146 425
MS.gene78818.t1 MTR_4g022670 49.569 464 189 11 1 445 1 438 8.79e-146 424
MS.gene78818.t1 MTR_8g041770 50.219 456 198 11 1 445 1 438 2.44e-145 422
MS.gene78818.t1 MTR_3g088420 49.891 459 187 12 1 445 1 430 8.13e-145 421
MS.gene78818.t1 MTR_7g026860 49.676 463 187 11 1 445 1 435 4.04e-144 419
MS.gene78818.t1 MTR_4g094832 56.316 380 138 9 75 440 57 422 1.61e-138 404
MS.gene78818.t1 MTR_4g022760 44.708 463 169 10 1 445 1 394 1.09e-120 358
MS.gene78818.t1 MTR_6g016815 40.749 454 172 10 1 446 15 379 1.84e-99 303
MS.gene78818.t1 MTR_3g101930 36.444 450 237 13 27 450 26 452 1.92e-80 256
MS.gene78818.t1 MTR_3g101900 35.991 439 241 13 30 450 29 445 1.72e-78 251
MS.gene78818.t1 MTR_3g101960 36.758 438 237 13 25 440 23 442 2.83e-78 251
MS.gene78818.t1 MTR_3g101970 37.176 425 218 14 25 429 23 418 3.79e-78 250
MS.gene78818.t1 MTR_3g102010 36.161 448 248 13 27 453 26 456 4.96e-78 250
MS.gene78818.t1 MTR_3g102020 36.547 446 242 14 25 447 23 450 7.94e-78 249
MS.gene78818.t1 MTR_8g040760 53.425 219 90 4 1 212 1 214 3.36e-72 227
MS.gene78818.t1 MTR_5g081960 32.640 481 247 15 29 452 25 485 1.48e-63 213
MS.gene78818.t1 MTR_4g094825 56.989 186 72 5 24 202 85 269 2.33e-62 207
MS.gene78818.t1 MTR_4g094825 50.000 146 59 4 296 440 251 383 1.01e-35 136
MS.gene78818.t1 MTR_4g015180 33.263 475 244 16 24 440 20 479 5.94e-61 206
MS.gene78818.t1 MTR_7g026850 62.179 156 56 3 30 184 7 160 1.10e-60 196
MS.gene78818.t1 MTR_3g070170 31.209 455 263 12 21 440 23 462 3.75e-59 201
MS.gene78818.t1 MTR_8g040780 41.949 236 119 5 209 441 5 225 9.70e-50 170
MS.gene78818.t1 MTR_6g034495 66.102 118 38 1 72 187 45 162 4.21e-47 160
MS.gene78818.t1 MTR_3g102030 32.267 344 179 13 72 401 17 320 5.04e-43 154
MS.gene78818.t1 MTR_6g045553 28.664 464 267 15 27 449 31 471 3.05e-37 142
MS.gene78818.t1 MTR_7g026770 43.478 184 78 4 148 331 132 289 4.76e-36 135
MS.gene78818.t1 MTR_7g026830 70.732 82 24 0 91 172 16 97 6.29e-35 125
MS.gene78818.t1 MTR_6g034485 41.727 139 63 3 191 325 1 125 2.80e-27 106
MS.gene78818.t1 MTR_8g075610 26.196 397 243 15 61 437 47 413 1.85e-26 111
MS.gene78818.t1 MTR_2g105330 25.845 414 252 17 48 435 39 423 2.12e-24 105
MS.gene78818.t1 MTR_2g064495 25.845 414 252 17 48 435 39 423 2.56e-24 105
MS.gene78818.t1 MTR_4g007540 25.000 416 262 15 48 439 39 428 2.36e-23 102
MS.gene78818.t1 MTR_3g026950 24.886 438 260 19 37 433 28 437 1.02e-21 97.8
MS.gene78818.t1 MTR_5g026320 25.257 487 277 22 3 449 17 456 1.37e-21 97.4
MS.gene78818.t1 MTR_4g097090 24.161 447 255 20 31 429 30 440 4.24e-21 95.9
MS.gene78818.t1 MTR_8g096530 25.779 353 216 13 61 396 59 382 2.91e-20 93.2
MS.gene78818.t1 MTR_3g049150 24.299 428 250 16 48 433 38 433 5.82e-20 92.4
MS.gene78818.t1 MTR_7g027175 23.529 391 274 11 51 435 58 429 1.13e-19 91.3
MS.gene78818.t1 MTR_7g085930 25.721 416 253 15 51 427 49 447 2.57e-19 90.5
MS.gene78818.t1 MTR_7g014200 25.054 459 264 18 29 435 28 458 9.71e-19 89.0
MS.gene78818.t1 MTR_6g015815 23.799 458 259 17 31 437 34 452 6.95e-18 86.3
MS.gene78818.t1 MTR_3g098980 23.876 356 222 12 61 398 66 390 1.06e-17 85.5
MS.gene78818.t1 MTR_7g014330 25.369 406 249 14 31 400 26 413 1.37e-17 85.1
MS.gene78818.t1 MTR_8g012750 25.537 419 243 17 28 396 23 422 2.36e-17 84.7
MS.gene78818.t1 MTR_7g014250 25.061 411 236 16 35 400 30 413 4.28e-17 83.6
MS.gene78818.t1 MTR_1g040175 24.390 369 245 14 36 397 46 387 8.20e-17 82.8
MS.gene78818.t1 MTR_4g013050 23.114 411 229 16 59 439 51 404 8.73e-17 82.4
MS.gene78818.t1 MTR_6g015320 24.433 397 256 15 31 399 29 409 9.27e-17 82.8
MS.gene78818.t1 MTR_7g014160 24.390 451 264 17 31 429 30 455 9.71e-17 82.8
MS.gene78818.t1 MTR_7g086000 25.400 437 242 20 61 447 60 462 9.75e-17 82.8
MS.gene78818.t1 MTR_7g085990 25.659 417 250 18 51 426 45 442 1.44e-16 82.0
MS.gene78818.t1 MTR_7g014230 25.485 412 241 16 31 400 28 415 1.71e-16 82.0
MS.gene78818.t1 MTR_3g028210 24.091 440 273 15 31 430 31 449 2.52e-16 81.3
MS.gene78818.t1 MTR_7g084940 28.090 356 208 16 59 396 67 392 2.85e-16 81.3
MS.gene78818.t1 MTR_6g015830 24.466 421 227 16 31 399 34 415 2.91e-16 81.3
MS.gene78818.t1 MTR_7g014620 22.989 435 264 14 31 429 15 414 2.51e-15 78.2
MS.gene78818.t1 MTR_3g071320 24.750 400 240 15 28 397 23 391 4.14e-15 77.4
MS.gene78818.t1 MTR_7g014610 22.961 466 271 20 34 439 32 469 4.28e-15 77.8
MS.gene78818.t1 MTR_1g081660 24.096 415 230 18 31 404 31 401 5.32e-15 77.4
MS.gene78818.t1 MTR_3g087640 24.222 450 273 17 36 435 31 462 6.80e-15 77.0
MS.gene78818.t1 MTR_3g086020 27.273 418 243 21 30 429 22 396 8.83e-15 76.3
MS.gene78818.t1 MTR_8g079970 24.368 435 257 17 3 408 2 393 9.34e-15 76.3
MS.gene78818.t1 MTR_5g084870 24.887 442 263 19 3 421 2 397 1.17e-14 76.3
MS.gene78818.t1 MTR_7g114470 23.235 439 263 21 32 430 25 429 1.21e-14 76.3
MS.gene78818.t1 MTR_5g090880 24.737 380 211 16 61 397 67 414 3.33e-14 74.7
MS.gene78818.t1 MTR_3g112180 24.882 422 263 18 35 435 38 426 4.06e-14 74.7
MS.gene78818.t1 MTR_2g089755 25.424 413 247 18 31 399 37 432 1.04e-13 73.6
MS.gene78818.t1 MTR_8g079980 23.333 390 238 14 54 421 52 402 2.71e-13 72.0
MS.gene78818.t1 MTR_7g026780 38.739 111 39 5 336 445 26 108 2.57e-12 63.9
MS.gene78818.t1 MTR_2g089650 23.485 396 244 16 45 399 43 420 2.60e-11 65.9
MS.gene78818.t1 MTR_7g084910 25.641 273 162 9 59 312 68 318 4.41e-11 65.1
MS.gene78818.t1 MTR_4g055170 25.606 289 185 10 61 336 69 340 9.17e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78818.t1 AT5G67150 38.411 453 246 12 3 440 4 438 1.96e-96 298
MS.gene78818.t1 AT3G50300 38.675 468 242 15 1 446 1 445 2.45e-90 282
MS.gene78818.t1 AT5G67160 37.736 424 230 10 27 440 25 424 7.14e-86 270
MS.gene78818.t1 AT3G50270 36.283 452 256 10 4 440 6 440 9.48e-86 270
MS.gene78818.t1 AT3G50280 35.635 449 254 11 1 434 1 429 3.53e-82 261
MS.gene78818.t1 AT5G38130 37.273 440 247 12 1 429 21 442 6.57e-82 260
MS.gene78818.t1 AT5G42830 35.581 430 241 13 30 440 29 441 3.38e-75 243
MS.gene78818.t1 AT5G07850 35.648 432 241 11 30 440 30 445 2.03e-73 238
MS.gene78818.t1 AT5G07860 35.499 431 239 10 30 440 30 441 7.81e-72 234
MS.gene78818.t1 AT5G01210 33.626 455 259 12 24 444 20 465 1.09e-65 219
MS.gene78818.t1 AT5G07870 34.889 450 244 14 30 447 30 462 1.35e-65 218
MS.gene78818.t1 AT2G39980 32.143 476 265 12 11 440 9 472 2.31e-65 218
MS.gene78818.t1 AT3G50280 36.102 313 176 7 132 434 1 299 6.93e-55 186
MS.gene78818.t1 AT3G50290 39.716 282 144 7 126 394 1 269 3.19e-51 174
MS.gene78818.t1 AT5G23940 31.066 441 254 13 27 437 21 441 5.73e-46 166
MS.gene78818.t1 AT5G41040 28.165 387 239 15 58 430 66 427 6.71e-26 109
MS.gene78818.t1 AT5G41040 28.165 387 239 15 58 430 82 443 8.75e-26 109
MS.gene78818.t1 AT3G48720 27.119 413 248 18 46 436 42 423 1.15e-22 100
MS.gene78818.t1 AT5G63560 25.450 389 235 14 61 430 61 413 4.59e-21 95.5
MS.gene78818.t1 AT2G19070 25.855 468 263 20 23 437 7 443 2.66e-20 93.6
MS.gene78818.t1 AT3G29590 23.982 442 276 16 31 439 28 442 3.69e-20 93.2
MS.gene78818.t1 AT5G57840 26.392 413 244 18 48 429 39 422 1.13e-18 88.6
MS.gene78818.t1 AT1G24430 25.789 380 229 16 48 409 44 388 1.05e-16 82.4
MS.gene78818.t1 AT3G29670 22.881 472 317 16 4 453 3 449 1.21e-16 82.4
MS.gene78818.t1 AT1G78990 26.005 373 219 16 50 397 56 396 3.76e-16 80.9
MS.gene78818.t1 AT3G26040 27.816 435 235 21 30 429 20 410 6.40e-16 80.1
MS.gene78818.t1 AT3G29635 24.598 435 273 17 28 429 26 438 7.41e-16 80.1
MS.gene78818.t1 AT5G07080 24.500 400 245 16 61 434 70 438 2.15e-15 78.6
MS.gene78818.t1 AT5G39080 23.341 437 275 16 1 399 2 416 4.98e-15 77.4
MS.gene78818.t1 AT5G47950 24.745 392 236 14 56 432 56 403 6.46e-14 73.9
MS.gene78818.t1 AT5G23970 23.058 412 243 15 47 430 38 403 1.26e-13 72.8
MS.gene78818.t1 AT5G61160 24.029 412 241 19 28 397 22 403 1.74e-13 72.8
MS.gene78818.t1 AT3G03480 24.208 442 262 20 32 435 33 439 1.84e-13 72.4
MS.gene78818.t1 AT3G30280 23.907 389 247 16 60 430 61 418 2.43e-13 72.0
MS.gene78818.t1 AT1G31490 24.586 362 215 15 58 397 59 384 2.39e-12 68.9
MS.gene78818.t1 AT5G39050 25.526 333 200 12 124 427 134 447 3.26e-12 68.9
MS.gene78818.t1 AT1G24420 25.000 340 209 12 72 399 76 381 6.11e-12 67.8
MS.gene78818.t1 AT1G24420 25.000 340 209 12 72 399 76 381 6.11e-12 67.8
MS.gene78818.t1 AT1G27620 23.238 383 269 12 61 437 58 421 3.78e-11 65.5
MS.gene78818.t1 AT5G39090 22.637 402 247 14 31 397 28 400 6.59e-11 64.7

Find 93 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTAGAAGAGAATTATTT+TGG 0.198109 4.2:+80644713 MS.gene78818:CDS
TTGTCTTCCTTATGATATTT+TGG 0.223517 4.2:+80645084 MS.gene78818:CDS
ATGGTCTATTTGGTTTGTTT+TGG 0.227446 4.2:-80643961 None:intergenic
CATTCTTGTCCTACAATCTA+TGG 0.234125 4.2:-80644684 None:intergenic
GGATCTCAAATTTCTCAAAT+TGG 0.239669 4.2:+80643905 MS.gene78818:CDS
CTACCTGGCTCCGATATAAA+TGG 0.244929 4.2:-80644890 None:intergenic
GGATATGTAATAATGCAAAA+AGG 0.251454 4.2:+80644755 MS.gene78818:CDS
AGTTTCATCAATAATGCTAT+TGG 0.259414 4.2:+80645142 MS.gene78818:CDS
TTTGTTTAAGATGGTCTATT+TGG 0.294119 4.2:-80643971 None:intergenic
ATGGGAAGGTTAACATTGTT+TGG 0.299003 4.2:-80644398 None:intergenic
TATGGAAAAGAAGACCTCTT+TGG 0.321294 4.2:-80643935 None:intergenic
GTTGGACTTCAAAGAAATAT+TGG 0.326500 4.2:+80645010 MS.gene78818:CDS
GTTGAAAACCCCATTTATAT+CGG 0.333565 4.2:+80644880 MS.gene78818:CDS
CATCACCATGATTTGTTGCT+TGG 0.340899 4.2:-80643839 None:intergenic
AAATAATTCTCTTCTAACTT+TGG 0.349532 4.2:-80644710 None:intergenic
GTGTAGACGGCAAGTCATTT+TGG 0.349934 4.2:+80644303 MS.gene78818:CDS
ATGGAAAAGAAGACCTCTTT+GGG 0.360598 4.2:-80643934 None:intergenic
ACGAATGCAGACCTTTCTTC+TGG 0.360777 4.2:-80644656 None:intergenic
TTTGGCATTTCATCAACTCT+TGG 0.368556 4.2:+80644321 MS.gene78818:CDS
TTACGGTAATGACTTTGGTT+GGG 0.373170 4.2:+80644961 MS.gene78818:CDS
TTGGCATTTCATCAACTCTT+GGG 0.376104 4.2:+80644322 MS.gene78818:CDS
ATGGAACATGAGGCGTTGTT+AGG 0.379377 4.2:-80644062 None:intergenic
AGCCTATTGCAGTTAGAAAT+GGG 0.388093 4.2:+80644987 MS.gene78818:CDS
CTTTGTGAAAGGAAACAGTA+TGG 0.391214 4.2:-80644417 None:intergenic
ACCCCATTTCTAACTGCAAT+AGG 0.394232 4.2:-80644989 None:intergenic
TCGTCTTACCCATAGATTGT+AGG 0.400779 4.2:+80644675 MS.gene78818:CDS
AAGCCTATTGCAGTTAGAAA+TGG 0.401535 4.2:+80644986 MS.gene78818:CDS
AACTATTACGGTAATGACTT+TGG 0.405935 4.2:+80644956 MS.gene78818:CDS
TTAATCGACGGTATCTTCAT+TGG 0.408333 4.2:+80644260 MS.gene78818:CDS
AGGAAAGTGTTTGTTTAAGA+TGG 0.419599 4.2:-80643980 None:intergenic
TCACCACGGTTCAACTATTA+CGG 0.422782 4.2:+80644944 MS.gene78818:CDS
GGGAGTGGAATCGGAGCAAC+TGG 0.428061 4.2:+80644734 MS.gene78818:CDS
TACCTGGCTCCGATATAAAT+GGG 0.437060 4.2:-80644889 None:intergenic
AAATTGTTCATTTATCTCCA+TGG 0.445544 4.2:+80643883 MS.gene78818:CDS
ATTACGGTAATGACTTTGGT+TGG 0.447960 4.2:+80644960 MS.gene78818:CDS
TACGGTAATGACTTTGGTTG+GGG 0.461686 4.2:+80644962 MS.gene78818:CDS
ATAGCCTCCAAAATATCATA+AGG 0.481866 4.2:-80645091 None:intergenic
AATTGTTCATTTATCTCCAT+GGG 0.481963 4.2:+80643884 MS.gene78818:CDS
GAATTAATGGAAAGTGGTAT+TGG 0.488797 4.2:+80644779 MS.gene78818:CDS
GGAAACCAACGTTCGAAAGA+AGG 0.490929 4.2:-80644377 None:intergenic
ACAATCCAAGCAACAAATCA+TGG 0.492574 4.2:+80643834 MS.gene78818:CDS
TAAGAATAATGAAGAAACAA+TGG 0.493631 4.2:-80644174 None:intergenic
ACAATGGGAGGAACATACTT+TGG 0.495798 4.2:-80644158 None:intergenic
AAGAATAATGAAGAAACAAT+GGG 0.496513 4.2:-80644173 None:intergenic
TTGAGAAATTTGAGATCCCA+TGG 0.499411 4.2:-80643900 None:intergenic
TGGTATTGGTAAAATTGCTA+TGG 0.503229 4.2:+80644793 MS.gene78818:CDS
ACCAGCGTTGTTACAAATGA+TGG 0.505482 4.2:-80644081 None:intergenic
GGTAGAGTTATTGTGCTTGG+TGG 0.507052 4.2:+80645031 MS.gene78818:CDS
GAATTTGTTCCTTTGTAAAG+TGG 0.513443 4.2:-80644484 None:intergenic
AACTTCTTTCCACCACTCGC+TGG 0.516081 4.2:+80644011 MS.gene78818:CDS
AACTAGAATCCATGGACATA+GGG 0.518441 4.2:-80645123 None:intergenic
CATACTGTTTCCTTTCACAA+AGG 0.523300 4.2:+80644418 MS.gene78818:CDS
AAAGGGGAATTAATGGAAAG+TGG 0.523850 4.2:+80644773 MS.gene78818:CDS
TAATGAGTGATATTGAATCT+TGG 0.525795 4.2:+80644858 MS.gene78818:CDS
TACTTATAATTAAACGCCAA+AGG 0.529613 4.2:-80644619 None:intergenic
ATTGGTAGAGTTATTGTGCT+TGG 0.531528 4.2:+80645028 MS.gene78818:CDS
AAACTAGAATCCATGGACAT+AGG 0.534361 4.2:-80645124 None:intergenic
AAAATCTTAAACCAGAAGAA+AGG 0.538946 4.2:+80644645 MS.gene78818:CDS
ACCCCATTTATATCGGAGCC+AGG 0.547815 4.2:+80644887 MS.gene78818:CDS
ATTGATGAAACTAGAATCCA+TGG 0.549335 4.2:-80645131 None:intergenic
AGATTACTTGATGATCTACC+TGG 0.550288 4.2:-80644905 None:intergenic
AGGAAACGACCCTATGTCCA+TGG 0.554536 4.2:+80645114 MS.gene78818:CDS
ATCAAAATCTCATCATGAGA+AGG 0.558207 4.2:+80644835 MS.gene78818:CDS
TGGTTGAAGTATGTCGGCAA+TGG 0.566982 4.2:-80644138 None:intergenic
ATTGCAGTTAGAAATGGGGT+TGG 0.568648 4.2:+80644992 MS.gene78818:CDS
ATACTTTGGTTGAAGTATGT+CGG 0.572459 4.2:-80644144 None:intergenic
AAAAGAAGACCTCTTTGGGT+TGG 0.572933 4.2:-80643930 None:intergenic
CAAGCAACAAATCATGGTGA+TGG 0.574475 4.2:+80643840 MS.gene78818:CDS
GTGCTTGGTGGTGCAGAAGA+AGG 0.576706 4.2:+80645043 MS.gene78818:CDS
ATTCTTGTCCTACAATCTAT+GGG 0.578627 4.2:-80644683 None:intergenic
TGAAAGGAAACAGTATGGGA+AGG 0.580780 4.2:-80644412 None:intergenic
TGGTGGAAAGAAGTTAAGTG+TGG 0.592664 4.2:-80644003 None:intergenic
GTTACTTGTACTGCAAGTAG+TGG 0.602193 4.2:-80644233 None:intergenic
TCGAATCTTCCACTTTACAA+AGG 0.603894 4.2:+80644475 MS.gene78818:CDS
AAGTACCTTCTTTCGAACGT+TGG 0.604822 4.2:+80644372 MS.gene78818:CDS
TTTGTGAAAGGAAACAGTAT+GGG 0.604933 4.2:-80644416 None:intergenic
ATTAACCATGTGTGTGTAGA+CGG 0.608212 4.2:+80644290 MS.gene78818:CDS
GCCTATTGCAGTTAGAAATG+GGG 0.609427 4.2:+80644988 MS.gene78818:CDS
TCCATCATTTGTAACAACGC+TGG 0.618527 4.2:+80644080 MS.gene78818:CDS
ACAAATCATGGTGATGGTGA+TGG 0.619825 4.2:+80643846 MS.gene78818:CDS
ACAAGACGACCAGCGAGTGG+TGG 0.630223 4.2:-80644020 None:intergenic
GTTACAAATGATGGAACATG+AGG 0.636643 4.2:-80644072 None:intergenic
AATTGCTATGGAAATGAACA+AGG 0.638167 4.2:+80644805 MS.gene78818:CDS
AAATTGGCACCAACCCAAAG+AGG 0.639346 4.2:+80643921 MS.gene78818:CDS
ACCTGGCTCCGATATAAATG+GGG 0.662922 4.2:-80644888 None:intergenic
TGGAAAGAAGTTAAGTGTGG+AGG 0.665000 4.2:-80644000 None:intergenic
CAAGTAACAGAGTTAATCGA+CGG 0.676652 4.2:+80644248 MS.gene78818:CDS
AACGATGTGAAAAGCTACGA+AGG 0.679578 4.2:+80644200 MS.gene78818:CDS
AATAATGAAGAAACAATGGG+AGG 0.681867 4.2:-80644170 None:intergenic
ACTTGCCGTCTACACACACA+TGG 0.683354 4.2:-80644295 None:intergenic
ATTACAAGACGACCAGCGAG+TGG 0.695572 4.2:-80644023 None:intergenic
TGATAGCAAGCAGTTCACCA+CGG 0.696229 4.2:+80644930 MS.gene78818:CDS
TTACCGTAATAGTTGAACCG+TGG 0.734430 4.2:-80644947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTCTCTTCTAACTT+TGG - chr4.2:80644713-80644732 None:intergenic 20.0%
!! AAGAATAATGAAGAAACAAT+GGG - chr4.2:80644176-80644195 None:intergenic 20.0%
!! ATATGTAATAATGCAAAAAG+GGG + chr4.2:80644757-80644776 MS.gene78818:CDS 20.0%
!! GATATGTAATAATGCAAAAA+GGG + chr4.2:80644756-80644775 MS.gene78818:CDS 20.0%
!! TAAGAATAATGAAGAAACAA+TGG - chr4.2:80644177-80644196 None:intergenic 20.0%
!!! AAGTTAGAAGAGAATTATTT+TGG + chr4.2:80644713-80644732 MS.gene78818:CDS 20.0%
!!! AGTTAGAAGAGAATTATTTT+GGG + chr4.2:80644714-80644733 MS.gene78818:CDS 20.0%
! AAAATCTTAAACCAGAAGAA+AGG + chr4.2:80644645-80644664 MS.gene78818:CDS 25.0%
! AAATTGTTCATTTATCTCCA+TGG + chr4.2:80643883-80643902 MS.gene78818:CDS 25.0%
! AATTGTTCATTTATCTCCAT+GGG + chr4.2:80643884-80643903 MS.gene78818:CDS 25.0%
! AGTTTCATCAATAATGCTAT+TGG + chr4.2:80645142-80645161 MS.gene78818:CDS 25.0%
! GGATATGTAATAATGCAAAA+AGG + chr4.2:80644755-80644774 MS.gene78818:CDS 25.0%
! TAATGAGTGATATTGAATCT+TGG + chr4.2:80644858-80644877 MS.gene78818:CDS 25.0%
! TACTTATAATTAAACGCCAA+AGG - chr4.2:80644622-80644641 None:intergenic 25.0%
!! TTGTCTTCCTTATGATATTT+TGG + chr4.2:80645084-80645103 MS.gene78818:CDS 25.0%
!! TTTGTTTAAGATGGTCTATT+TGG - chr4.2:80643974-80643993 None:intergenic 25.0%
AACTATTACGGTAATGACTT+TGG + chr4.2:80644956-80644975 MS.gene78818:CDS 30.0%
AATAATGAAGAAACAATGGG+AGG - chr4.2:80644173-80644192 None:intergenic 30.0%
AATGCAAAAAGGGGAATTAA+TGG + chr4.2:80644766-80644785 MS.gene78818:CDS 30.0%
AATTGCTATGGAAATGAACA+AGG + chr4.2:80644805-80644824 MS.gene78818:CDS 30.0%
ATACTTTGGTTGAAGTATGT+CGG - chr4.2:80644147-80644166 None:intergenic 30.0%
ATAGCCTCCAAAATATCATA+AGG - chr4.2:80645094-80645113 None:intergenic 30.0%
ATCAAAATCTCATCATGAGA+AGG + chr4.2:80644835-80644854 MS.gene78818:CDS 30.0%
ATTCTTGTCCTACAATCTAT+GGG - chr4.2:80644686-80644705 None:intergenic 30.0%
ATTGATGAAACTAGAATCCA+TGG - chr4.2:80645134-80645153 None:intergenic 30.0%
GAATTAATGGAAAGTGGTAT+TGG + chr4.2:80644779-80644798 MS.gene78818:CDS 30.0%
GGATCTCAAATTTCTCAAAT+TGG + chr4.2:80643905-80643924 MS.gene78818:CDS 30.0%
GTTGAAAACCCCATTTATAT+CGG + chr4.2:80644880-80644899 MS.gene78818:CDS 30.0%
GTTGGACTTCAAAGAAATAT+TGG + chr4.2:80645010-80645029 MS.gene78818:CDS 30.0%
TTTGTGAAAGGAAACAGTAT+GGG - chr4.2:80644419-80644438 None:intergenic 30.0%
! GAATTTGTTCCTTTGTAAAG+TGG - chr4.2:80644487-80644506 None:intergenic 30.0%
!! AGGAAAGTGTTTGTTTAAGA+TGG - chr4.2:80643983-80644002 None:intergenic 30.0%
!! TATGATATTTTGGAGGCTAT+AGG + chr4.2:80645094-80645113 MS.gene78818:CDS 30.0%
!! TCTTCCTTATGATATTTTGG+AGG + chr4.2:80645087-80645106 MS.gene78818:CDS 30.0%
!! TGGTATTGGTAAAATTGCTA+TGG + chr4.2:80644793-80644812 MS.gene78818:CDS 30.0%
!!! AATTATTTTGGGAGTGGAAT+CGG + chr4.2:80644725-80644744 MS.gene78818:CDS 30.0%
!!! ATGGTCTATTTGGTTTGTTT+TGG - chr4.2:80643964-80643983 None:intergenic 30.0%
!!! TGGTCTATTTGGTTTGTTTT+GGG - chr4.2:80643963-80643982 None:intergenic 30.0%
!!! TTTGGTTTGTTTTGGGTTTA+TGG - chr4.2:80643956-80643975 None:intergenic 30.0%
AAACTAGAATCCATGGACAT+AGG - chr4.2:80645127-80645146 None:intergenic 35.0%
AAAGGGGAATTAATGGAAAG+TGG + chr4.2:80644773-80644792 MS.gene78818:CDS 35.0%
AACTAGAATCCATGGACATA+GGG - chr4.2:80645126-80645145 None:intergenic 35.0%
AAGCCTATTGCAGTTAGAAA+TGG + chr4.2:80644986-80645005 MS.gene78818:CDS 35.0%
ACAATCCAAGCAACAAATCA+TGG + chr4.2:80643834-80643853 MS.gene78818:CDS 35.0%
AGCCTATTGCAGTTAGAAAT+GGG + chr4.2:80644987-80645006 MS.gene78818:CDS 35.0%
ATGGAAAAGAAGACCTCTTT+GGG - chr4.2:80643937-80643956 None:intergenic 35.0%
ATGGGAAGGTTAACATTGTT+TGG - chr4.2:80644401-80644420 None:intergenic 35.0%
ATTAACCATGTGTGTGTAGA+CGG + chr4.2:80644290-80644309 MS.gene78818:CDS 35.0%
ATTACGGTAATGACTTTGGT+TGG + chr4.2:80644960-80644979 MS.gene78818:CDS 35.0%
ATTGGTAGAGTTATTGTGCT+TGG + chr4.2:80645028-80645047 MS.gene78818:CDS 35.0%
CAAGTAACAGAGTTAATCGA+CGG + chr4.2:80644248-80644267 MS.gene78818:CDS 35.0%
CATACTGTTTCCTTTCACAA+AGG + chr4.2:80644418-80644437 MS.gene78818:CDS 35.0%
CATTCTTGTCCTACAATCTA+TGG - chr4.2:80644687-80644706 None:intergenic 35.0%
CTTTGTGAAAGGAAACAGTA+TGG - chr4.2:80644420-80644439 None:intergenic 35.0%
TATGGAAAAGAAGACCTCTT+TGG - chr4.2:80643938-80643957 None:intergenic 35.0%
TCGAATCTTCCACTTTACAA+AGG + chr4.2:80644475-80644494 MS.gene78818:CDS 35.0%
TTAATCGACGGTATCTTCAT+TGG + chr4.2:80644260-80644279 MS.gene78818:CDS 35.0%
TTACGGTAATGACTTTGGTT+GGG + chr4.2:80644961-80644980 MS.gene78818:CDS 35.0%
TTGGCATTTCATCAACTCTT+GGG + chr4.2:80644322-80644341 MS.gene78818:CDS 35.0%
TTTGGCATTTCATCAACTCT+TGG + chr4.2:80644321-80644340 MS.gene78818:CDS 35.0%
! AGATTACTTGATGATCTACC+TGG - chr4.2:80644908-80644927 None:intergenic 35.0%
! GTTACAAATGATGGAACATG+AGG - chr4.2:80644075-80644094 None:intergenic 35.0%
! TTGAGAAATTTGAGATCCCA+TGG - chr4.2:80643903-80643922 None:intergenic 35.0%
! TTTTGTGCATCCTTTGTGAA+AGG - chr4.2:80644431-80644450 None:intergenic 35.0%
!!! AGGTACTTTTGTTGGCTTAT+TGG - chr4.2:80644360-80644379 None:intergenic 35.0%
!!! GAAGAGAATTATTTTGGGAG+TGG + chr4.2:80644719-80644738 MS.gene78818:CDS 35.0%
!!! TCGAAAGAAGGTACTTTTGT+TGG - chr4.2:80644368-80644387 None:intergenic 35.0%
AAAAGAAGACCTCTTTGGGT+TGG - chr4.2:80643933-80643952 None:intergenic 40.0%
AACGATGTGAAAAGCTACGA+AGG + chr4.2:80644200-80644219 MS.gene78818:CDS 40.0%
AAGTACCTTCTTTCGAACGT+TGG + chr4.2:80644372-80644391 MS.gene78818:CDS 40.0%
ACAATGGGAGGAACATACTT+TGG - chr4.2:80644161-80644180 None:intergenic 40.0%
ACCAGCGTTGTTACAAATGA+TGG - chr4.2:80644084-80644103 None:intergenic 40.0%
ACCCCATTTCTAACTGCAAT+AGG - chr4.2:80644992-80645011 None:intergenic 40.0%
ATTGCAGTTAGAAATGGGGT+TGG + chr4.2:80644992-80645011 MS.gene78818:CDS 40.0%
CAAGCAACAAATCATGGTGA+TGG + chr4.2:80643840-80643859 MS.gene78818:CDS 40.0%
GCCTATTGCAGTTAGAAATG+GGG + chr4.2:80644988-80645007 MS.gene78818:CDS 40.0%
GTTACTTGTACTGCAAGTAG+TGG - chr4.2:80644236-80644255 None:intergenic 40.0%
TACCTGGCTCCGATATAAAT+GGG - chr4.2:80644892-80644911 None:intergenic 40.0%
TACGGTAATGACTTTGGTTG+GGG + chr4.2:80644962-80644981 MS.gene78818:CDS 40.0%
TCACCACGGTTCAACTATTA+CGG + chr4.2:80644944-80644963 MS.gene78818:CDS 40.0%
TCCATCATTTGTAACAACGC+TGG + chr4.2:80644080-80644099 MS.gene78818:CDS 40.0%
TCGTCTTACCCATAGATTGT+AGG + chr4.2:80644675-80644694 MS.gene78818:CDS 40.0%
TGAAAGGAAACAGTATGGGA+AGG - chr4.2:80644415-80644434 None:intergenic 40.0%
TGGAAAGAAGTTAAGTGTGG+AGG - chr4.2:80644003-80644022 None:intergenic 40.0%
TGGTGGAAAGAAGTTAAGTG+TGG - chr4.2:80644006-80644025 None:intergenic 40.0%
TTACCGTAATAGTTGAACCG+TGG - chr4.2:80644950-80644969 None:intergenic 40.0%
!! AAGCGCTTTTAAGTCACCTT+TGG + chr4.2:80644603-80644622 MS.gene78818:CDS 40.0%
!! AATGGTAGTGTTTTCAGCTG+TGG - chr4.2:80644123-80644142 None:intergenic 40.0%
!! ACAAATCATGGTGATGGTGA+TGG + chr4.2:80643846-80643865 MS.gene78818:CDS 40.0%
!! CATCACCATGATTTGTTGCT+TGG - chr4.2:80643842-80643861 None:intergenic 40.0%
AAATTGGCACCAACCCAAAG+AGG + chr4.2:80643921-80643940 MS.gene78818:CDS 45.0%
ACCTGGCTCCGATATAAATG+GGG - chr4.2:80644891-80644910 None:intergenic 45.0%
ACGAATGCAGACCTTTCTTC+TGG - chr4.2:80644659-80644678 None:intergenic 45.0%
CTACCTGGCTCCGATATAAA+TGG - chr4.2:80644893-80644912 None:intergenic 45.0%
GGAAACCAACGTTCGAAAGA+AGG - chr4.2:80644380-80644399 None:intergenic 45.0%
GGTAGAGTTATTGTGCTTGG+TGG + chr4.2:80645031-80645050 MS.gene78818:CDS 45.0%
TGATAGCAAGCAGTTCACCA+CGG + chr4.2:80644930-80644949 MS.gene78818:CDS 45.0%
TGGTTGAAGTATGTCGGCAA+TGG - chr4.2:80644141-80644160 None:intergenic 45.0%
! GTGTAGACGGCAAGTCATTT+TGG + chr4.2:80644303-80644322 MS.gene78818:CDS 45.0%
!! ATGGAACATGAGGCGTTGTT+AGG - chr4.2:80644065-80644084 None:intergenic 45.0%
AACTTCTTTCCACCACTCGC+TGG + chr4.2:80644011-80644030 MS.gene78818:CDS 50.0%
ACCCCATTTATATCGGAGCC+AGG + chr4.2:80644887-80644906 MS.gene78818:CDS 50.0%
ACTTGCCGTCTACACACACA+TGG - chr4.2:80644298-80644317 None:intergenic 50.0%
AGGAAACGACCCTATGTCCA+TGG + chr4.2:80645114-80645133 MS.gene78818:CDS 50.0%
ATTACAAGACGACCAGCGAG+TGG - chr4.2:80644026-80644045 None:intergenic 50.0%
! TAGTGTTTTCAGCTGTGGCG+TGG - chr4.2:80644118-80644137 None:intergenic 50.0%
!! GTGCTTGGTGGTGCAGAAGA+AGG + chr4.2:80645043-80645062 MS.gene78818:CDS 55.0%
ACAAGACGACCAGCGAGTGG+TGG - chr4.2:80644023-80644042 None:intergenic 60.0%
GGGAGTGGAATCGGAGCAAC+TGG + chr4.2:80644734-80644753 MS.gene78818:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 80643804 80645177 80643804 ID=MS.gene78818
chr4.2 mRNA 80643804 80645177 80643804 ID=MS.gene78818.t1;Parent=MS.gene78818
chr4.2 exon 80643804 80645177 80643804 ID=MS.gene78818.t1.exon1;Parent=MS.gene78818.t1
chr4.2 CDS 80643804 80645177 80643804 ID=cds.MS.gene78818.t1;Parent=MS.gene78818.t1
Gene Sequence

>MS.gene78818

ATGACAGAGATTCAACTTATCTCAACTTCTACAATCCAAGCAACAAATCATGGTGATGGTGATGGCAACTCAACTCACAAAATTGTTCATTTATCTCCATGGGATCTCAAATTTCTCAAATTGGCACCAACCCAAAGAGGTCTTCTTTTCCATAAACCCAAAACAAACCAAATAGACCATCTTAAACAAACACTTTCCTCCACACTTAACTTCTTTCCACCACTCGCTGGTCGTCTTGTAATAACACAACACGACGAACCTAACAACGCCTCATGTTCCATCATTTGTAACAACGCTGGTGCATTGTTTGTCCACGCCACAGCTGAAAACACTACCATTGCCGACATACTTCAACCAAAGTATGTTCCTCCCATTGTTTCTTCATTATTCTTACTCAACGATGTGAAAAGCTACGAAGGCACGTCACAACCACTACTTGCAGTACAAGTAACAGAGTTAATCGACGGTATCTTCATTGGTTTTGCAATTAACCATGTGTGTGTAGACGGCAAGTCATTTTGGCATTTCATCAACTCTTGGGCTGAAATCTCTTCCAATAAGCCAACAAAAGTACCTTCTTTCGAACGTTGGTTTCCAAACAATGTTAACCTTCCCATACTGTTTCCTTTCACAAAGGATGCACAAAATCAACAATGTGAAGTTTCGTCTAATCGAATCTTCCACTTTACAAAGGAACAAATTCTGCAACTCAAATCAAAAGCTAATACAGAAATTAGTAGTAGTAGTTGTAGTAGTAGTAGTAATAGTAATGATAAAATAATAACGATATCTTCATTGCAAGCGCTTTTAAGTCACCTTTGGCGTTTAATTATAAGTAAACAAAATCTTAAACCAGAAGAAAGGTCTGCATTCGTCTTACCCATAGATTGTAGGACAAGAATGTGTCCAAAGTTAGAAGAGAATTATTTTGGGAGTGGAATCGGAGCAACTGGATATGTAATAATGCAAAAAGGGGAATTAATGGAAAGTGGTATTGGTAAAATTGCTATGGAAATGAACAAGGAGATTTCATCAAAATCTCATCATGAGAAGGTAATGAGTGATATTGAATCTTGGTTGAAAACCCCATTTATATCGGAGCCAGGTAGATCATCAAGTAATCTTTTGATAGCAAGCAGTTCACCACGGTTCAACTATTACGGTAATGACTTTGGTTGGGGTAAGCCTATTGCAGTTAGAAATGGGGTTGGACTTCAAAGAAATATTGGTAGAGTTATTGTGCTTGGTGGTGCAGAAGAAGGTAGTATTGATATTGAAGTTTGTCTTCCTTATGATATTTTGGAGGCTATAGGAAACGACCCTATGTCCATGGATTCTAGTTTCATCAATAATGCTATTGGAACAAATGCTTGA

Protein sequence

>MS.gene78818.t1

MTEIQLISTSTIQATNHGDGDGNSTHKIVHLSPWDLKFLKLAPTQRGLLFHKPKTNQIDHLKQTLSSTLNFFPPLAGRLVITQHDEPNNASCSIICNNAGALFVHATAENTTIADILQPKYVPPIVSSLFLLNDVKSYEGTSQPLLAVQVTELIDGIFIGFAINHVCVDGKSFWHFINSWAEISSNKPTKVPSFERWFPNNVNLPILFPFTKDAQNQQCEVSSNRIFHFTKEQILQLKSKANTEISSSSCSSSSNSNDKIITISSLQALLSHLWRLIISKQNLKPEERSAFVLPIDCRTRMCPKLEENYFGSGIGATGYVIMQKGELMESGIGKIAMEMNKEISSKSHHEKVMSDIESWLKTPFISEPGRSSSNLLIASSSPRFNYYGNDFGWGKPIAVRNGVGLQRNIGRVIVLGGAEEGSIDIEVCLPYDILEAIGNDPMSMDSSFINNAIGTNA