Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80293.t1 | XP_003619580.2 | 83.1 | 213 | 35 | 1 | 1 | 212 | 1 | 213 | 8.10E-97 | 363.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80293.t1 | Q41015 | 43.1 | 211 | 106 | 9 | 1 | 202 | 1 | 206 | 9.5e-30 | 131.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80293.t1 | G7KMU9 | 83.1 | 213 | 35 | 1 | 1 | 212 | 1 | 213 | 5.8e-97 | 363.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04925 | MS.gene80293 | 0.817159 | 3.81E-52 | -1.69E-46 |
| MS.gene04926 | MS.gene80293 | 0.801035 | 1.09E-48 | -1.69E-46 |
| MS.gene04932 | MS.gene80293 | 0.850265 | 1.90E-60 | -1.69E-46 |
| MS.gene049549 | MS.gene80293 | 0.871699 | 5.60E-67 | -1.69E-46 |
| MS.gene050133 | MS.gene80293 | 0.825837 | 3.77E-54 | -1.69E-46 |
| MS.gene050720 | MS.gene80293 | 0.821371 | 4.18E-53 | -1.69E-46 |
| MS.gene05104 | MS.gene80293 | 0.814287 | 1.66E-51 | -1.69E-46 |
| MS.gene051131 | MS.gene80293 | 0.825754 | 3.94E-54 | -1.69E-46 |
| MS.gene051158 | MS.gene80293 | 0.804085 | 2.56E-49 | -1.69E-46 |
| MS.gene051439 | MS.gene80293 | 0.812395 | 4.33E-51 | -1.69E-46 |
| MS.gene051552 | MS.gene80293 | 0.806214 | 9.17E-50 | -1.69E-46 |
| MS.gene051996 | MS.gene80293 | 0.838711 | 2.45E-57 | -1.69E-46 |
| MS.gene052134 | MS.gene80293 | -0.831496 | 1.62E-55 | -1.69E-46 |
| MS.gene052135 | MS.gene80293 | -0.819521 | 1.11E-52 | -1.69E-46 |
| MS.gene052136 | MS.gene80293 | -0.808886 | 2.48E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene80293 | 0.858289 | 9.12E-63 | -1.69E-46 |
| MS.gene052212 | MS.gene80293 | 0.813443 | 2.55E-51 | -1.69E-46 |
| MS.gene052223 | MS.gene80293 | 0.828235 | 1.01E-54 | -1.69E-46 |
| MS.gene05240 | MS.gene80293 | 0.869736 | 2.48E-66 | -1.69E-46 |
| MS.gene052414 | MS.gene80293 | -0.801422 | 9.07E-49 | -1.69E-46 |
| MS.gene05244 | MS.gene80293 | 0.827147 | 1.84E-54 | -1.69E-46 |
| MS.gene052505 | MS.gene80293 | -0.809718 | 1.65E-50 | -1.69E-46 |
| MS.gene052606 | MS.gene80293 | 0.817799 | 2.73E-52 | -1.69E-46 |
| MS.gene052702 | MS.gene80293 | 0.80935 | 1.98E-50 | -1.69E-46 |
| MS.gene052705 | MS.gene80293 | 0.823936 | 1.06E-53 | -1.69E-46 |
| MS.gene052706 | MS.gene80293 | 0.80778 | 4.28E-50 | -1.69E-46 |
| MS.gene053403 | MS.gene80293 | 0.810278 | 1.25E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene80293 | 0.844261 | 8.43E-59 | -1.69E-46 |
| MS.gene053479 | MS.gene80293 | -0.802681 | 5.00E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene80293 | 0.809998 | 1.43E-50 | -1.69E-46 |
| MS.gene054102 | MS.gene80293 | -0.807377 | 5.21E-50 | -1.69E-46 |
| MS.gene054120 | MS.gene80293 | 0.81315 | 2.96E-51 | -1.69E-46 |
| MS.gene054138 | MS.gene80293 | 0.812924 | 3.32E-51 | -1.69E-46 |
| MS.gene054146 | MS.gene80293 | 0.850255 | 1.91E-60 | -1.69E-46 |
| MS.gene054147 | MS.gene80293 | 0.832548 | 8.88E-56 | -1.69E-46 |
| MS.gene054277 | MS.gene80293 | 0.863577 | 2.25E-64 | -1.69E-46 |
| MS.gene054421 | MS.gene80293 | 0.812253 | 4.65E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene80293 | 0.886016 | 4.94E-72 | -1.69E-46 |
| MS.gene054884 | MS.gene80293 | 0.810617 | 1.05E-50 | -1.69E-46 |
| MS.gene055240 | MS.gene80293 | 0.852099 | 5.76E-61 | -1.69E-46 |
| MS.gene055601 | MS.gene80293 | 0.800513 | 1.39E-48 | -1.69E-46 |
| MS.gene056218 | MS.gene80293 | 0.810184 | 1.31E-50 | -1.69E-46 |
| MS.gene056330 | MS.gene80293 | 0.849769 | 2.61E-60 | -1.69E-46 |
| MS.gene056514 | MS.gene80293 | -0.80472 | 1.89E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene80293 | 0.838672 | 2.50E-57 | -1.69E-46 |
| MS.gene056591 | MS.gene80293 | 0.837917 | 3.92E-57 | -1.69E-46 |
| MS.gene056633 | MS.gene80293 | -0.809975 | 1.45E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene80293 | 0.844089 | 9.38E-59 | -1.69E-46 |
| MS.gene056688 | MS.gene80293 | 0.811665 | 6.25E-51 | -1.69E-46 |
| MS.gene056690 | MS.gene80293 | 0.801181 | 1.02E-48 | -1.69E-46 |
| MS.gene056691 | MS.gene80293 | 0.814084 | 1.84E-51 | -1.69E-46 |
| MS.gene056697 | MS.gene80293 | 0.818689 | 1.72E-52 | -1.69E-46 |
| MS.gene056715 | MS.gene80293 | 0.81478 | 1.29E-51 | -1.69E-46 |
| MS.gene056748 | MS.gene80293 | 0.803841 | 2.88E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene80293 | 0.880013 | 7.78E-70 | -1.69E-46 |
| MS.gene056922 | MS.gene80293 | 0.856016 | 4.28E-62 | -1.69E-46 |
| MS.gene056923 | MS.gene80293 | 0.833415 | 5.40E-56 | -1.69E-46 |
| MS.gene056924 | MS.gene80293 | 0.830277 | 3.21E-55 | -1.69E-46 |
| MS.gene056925 | MS.gene80293 | 0.802628 | 5.13E-49 | -1.69E-46 |
| MS.gene057048 | MS.gene80293 | -0.801658 | 8.11E-49 | -1.69E-46 |
| MS.gene057261 | MS.gene80293 | 0.84084 | 6.82E-58 | -1.69E-46 |
| MS.gene057544 | MS.gene80293 | 0.825655 | 4.16E-54 | -1.69E-46 |
| MS.gene057550 | MS.gene80293 | 0.802758 | 4.82E-49 | -1.69E-46 |
| MS.gene057820 | MS.gene80293 | 0.815476 | 9.07E-52 | -1.69E-46 |
| MS.gene058177 | MS.gene80293 | 0.813707 | 2.23E-51 | -1.69E-46 |
| MS.gene058381 | MS.gene80293 | 0.838611 | 2.59E-57 | -1.69E-46 |
| MS.gene058418 | MS.gene80293 | 0.802799 | 4.73E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene80293 | 0.821823 | 3.29E-53 | -1.69E-46 |
| MS.gene058838 | MS.gene80293 | -0.814167 | 1.77E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene80293 | 0.841902 | 3.59E-58 | -1.69E-46 |
| MS.gene059891 | MS.gene80293 | 0.804473 | 2.12E-49 | -1.69E-46 |
| MS.gene059892 | MS.gene80293 | 0.823354 | 1.45E-53 | -1.69E-46 |
| MS.gene059955 | MS.gene80293 | 0.825767 | 3.92E-54 | -1.69E-46 |
| MS.gene060087 | MS.gene80293 | 0.94815 | 1.67E-106 | -1.69E-46 |
| MS.gene060358 | MS.gene80293 | 0.801945 | 7.09E-49 | -1.69E-46 |
| MS.gene061038 | MS.gene80293 | 0.812771 | 3.58E-51 | -1.69E-46 |
| MS.gene061092 | MS.gene80293 | 0.809456 | 1.88E-50 | -1.69E-46 |
| MS.gene061094 | MS.gene80293 | 0.822352 | 2.48E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80293.t1 | MTR_6g059760 | 83.099 | 213 | 35 | 1 | 1 | 212 | 1 | 213 | 2.34e-126 | 355 |
| MS.gene80293.t1 | MTR_6g059755 | 84.496 | 129 | 19 | 1 | 85 | 212 | 2 | 130 | 1.85e-75 | 223 |
| MS.gene80293.t1 | MTR_6g059650 | 52.511 | 219 | 89 | 9 | 1 | 212 | 1 | 211 | 1.96e-54 | 173 |
| MS.gene80293.t1 | MTR_6g065460 | 45.933 | 209 | 100 | 8 | 1 | 201 | 1 | 204 | 2.67e-45 | 149 |
| MS.gene80293.t1 | MTR_6g044780 | 43.182 | 220 | 114 | 8 | 1 | 212 | 1 | 217 | 9.75e-43 | 144 |
| MS.gene80293.t1 | MTR_6g045097 | 43.182 | 220 | 114 | 8 | 1 | 212 | 1 | 217 | 2.08e-42 | 143 |
| MS.gene80293.t1 | MTR_6g044810 | 42.661 | 218 | 114 | 8 | 1 | 210 | 1 | 215 | 1.18e-41 | 140 |
| MS.gene80293.t1 | MTR_6g059410 | 44.601 | 213 | 99 | 9 | 1 | 207 | 1 | 200 | 1.05e-39 | 135 |
| MS.gene80293.t1 | MTR_6g059530 | 44.860 | 214 | 98 | 10 | 1 | 207 | 1 | 201 | 4.89e-39 | 133 |
| MS.gene80293.t1 | MTR_6g045403 | 41.364 | 220 | 117 | 9 | 1 | 212 | 1 | 216 | 6.25e-39 | 134 |
| MS.gene80293.t1 | MTR_6g045433 | 40.175 | 229 | 113 | 9 | 1 | 212 | 1 | 222 | 2.09e-36 | 127 |
| MS.gene80293.t1 | MTR_6g065460 | 38.647 | 207 | 94 | 7 | 1 | 201 | 1 | 180 | 2.26e-30 | 110 |
| MS.gene80293.t1 | MTR_3g463590 | 39.896 | 193 | 101 | 9 | 25 | 207 | 22 | 209 | 6.41e-30 | 110 |
| MS.gene80293.t1 | MTR_1g057110 | 37.931 | 203 | 103 | 9 | 1 | 199 | 1 | 184 | 6.68e-28 | 104 |
| MS.gene80293.t1 | MTR_6g066190 | 38.914 | 221 | 115 | 12 | 1 | 211 | 1 | 211 | 2.85e-27 | 103 |
| MS.gene80293.t1 | MTR_6g009650 | 38.679 | 212 | 111 | 11 | 1 | 202 | 1 | 203 | 3.27e-25 | 98.2 |
| MS.gene80293.t1 | MTR_6g059730 | 36.538 | 208 | 119 | 7 | 1 | 200 | 1 | 203 | 1.36e-24 | 96.7 |
| MS.gene80293.t1 | MTR_6g009563 | 37.089 | 213 | 114 | 12 | 1 | 202 | 1 | 204 | 1.21e-21 | 88.6 |
| MS.gene80293.t1 | MTR_6g066210 | 35.426 | 223 | 123 | 12 | 1 | 211 | 1 | 214 | 3.49e-21 | 87.8 |
| MS.gene80293.t1 | MTR_6g017225 | 34.722 | 216 | 118 | 11 | 1 | 201 | 1 | 208 | 5.14e-21 | 89.7 |
| MS.gene80293.t1 | MTR_6g059680 | 36.410 | 195 | 107 | 10 | 18 | 200 | 18 | 207 | 1.30e-20 | 86.3 |
| MS.gene80293.t1 | MTR_6g059810 | 36.150 | 213 | 103 | 14 | 6 | 198 | 9 | 208 | 5.35e-19 | 82.0 |
| MS.gene80293.t1 | MTR_1g035770 | 34.896 | 192 | 107 | 12 | 11 | 188 | 11 | 198 | 1.85e-14 | 69.7 |
| MS.gene80293.t1 | MTR_7g037410 | 32.558 | 172 | 99 | 8 | 29 | 189 | 27 | 192 | 1.18e-13 | 67.4 |
| MS.gene80293.t1 | MTR_6g078070 | 31.000 | 200 | 123 | 9 | 9 | 198 | 6 | 200 | 3.04e-12 | 63.5 |
| MS.gene80293.t1 | MTR_6g065570 | 44.156 | 77 | 37 | 3 | 15 | 85 | 11 | 87 | 4.66e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGTAAGAAATACTTTATT+TGG | 0.169494 | 6.1:-59726284 | MS.gene80293:CDS |
| GGTATTGGTGGTGGTGTTAA+TGG | 0.238618 | 6.1:-59726018 | MS.gene80293:CDS |
| CCTGGTTTATGTAATAATAT+TGG | 0.276379 | 6.1:-59725907 | MS.gene80293:CDS |
| TCCAAGTGGGTGGTAGTTAA+AGG | 0.301512 | 6.1:-59726063 | MS.gene80293:CDS |
| GGTAAGTAATGTAGGGTTCA+TGG | 0.354211 | 6.1:+59726407 | None:intergenic |
| TATTCAAACTACAGATCTTC+CGG | 0.354335 | 6.1:+59725786 | None:intergenic |
| ACAACTTGAGTAAAGGATAA+TGG | 0.359989 | 6.1:+59726345 | None:intergenic |
| TATTTCTTACTCACAAGAAC+GGG | 0.363139 | 6.1:+59726294 | None:intergenic |
| ATTGAACCATGGGTAGGTAT+TGG | 0.417221 | 6.1:-59726033 | MS.gene80293:CDS |
| TAGAGGGTGGTAAGTAATGT+AGG | 0.427202 | 6.1:+59726399 | None:intergenic |
| AATGGTAAGAGTATTATAGA+TGG | 0.435603 | 6.1:-59726000 | MS.gene80293:CDS |
| ACCTTTAACTACCACCCACT+TGG | 0.461157 | 6.1:+59726062 | None:intergenic |
| TCAATGAATACAACTTCAAA+GGG | 0.470712 | 6.1:+59725829 | None:intergenic |
| ATCAATGAATACAACTTCAA+AGG | 0.473477 | 6.1:+59725828 | None:intergenic |
| GGGCAAAGAGGAAGAAATAG+AGG | 0.480997 | 6.1:+59726382 | None:intergenic |
| TTGGGATAAATGTTAGTGGC+AGG | 0.501980 | 6.1:+59726169 | None:intergenic |
| ACCAGGTGTATCACTGGTGG+TGG | 0.503174 | 6.1:+59725924 | None:intergenic |
| TCTGTTGGGATAAATGTTAG+TGG | 0.504722 | 6.1:+59726165 | None:intergenic |
| TAATGGAAAGTAGGTGGCTA+GGG | 0.507074 | 6.1:+59726362 | None:intergenic |
| GTTGAAGATGCTGCTCGATC+CGG | 0.510209 | 6.1:-59725805 | MS.gene80293:CDS |
| TTTAACTACCACCCACTTGG+AGG | 0.510750 | 6.1:+59726065 | None:intergenic |
| AGTAAAGGATAATGGAAAGT+AGG | 0.512041 | 6.1:+59726353 | None:intergenic |
| CAGTCCACCACCACTTTCAC+CGG | 0.513171 | 6.1:+59726257 | None:intergenic |
| GAACCATGGGTAGGTATTGG+TGG | 0.518436 | 6.1:-59726030 | MS.gene80293:CDS |
| AGGTGGTTTCATTGAACCAT+GGG | 0.524203 | 6.1:-59726043 | MS.gene80293:CDS |
| TTGTTCAACAACTTGAGTAA+AGG | 0.539696 | 6.1:+59726338 | None:intergenic |
| CCACCACCACTTTCACCGGC+TGG | 0.539880 | 6.1:+59726261 | None:intergenic |
| AAATACTTTATTTGGCCAGC+CGG | 0.543561 | 6.1:-59726276 | MS.gene80293:CDS |
| ATTTGGCCAGCCGGTGAAAG+TGG | 0.544335 | 6.1:-59726267 | MS.gene80293:CDS |
| CCAGCCGGTGAAAGTGGTGG+TGG | 0.546062 | 6.1:-59726261 | MS.gene80293:CDS |
| ACATAAACCAGGTGTATCAC+TGG | 0.553319 | 6.1:+59725918 | None:intergenic |
| AAAGCTTGCTGTACAACAAG+TGG | 0.555218 | 6.1:+59726210 | None:intergenic |
| ATAATGGAAAGTAGGTGGCT+AGG | 0.557559 | 6.1:+59726361 | None:intergenic |
| CCATGGGTAGGTATTGGTGG+TGG | 0.565594 | 6.1:-59726027 | MS.gene80293:CDS |
| TCAAGTTGTTGAACAAGTGA+AGG | 0.568787 | 6.1:-59726331 | MS.gene80293:CDS |
| AAGGTGGTTTCATTGAACCA+TGG | 0.574110 | 6.1:-59726044 | MS.gene80293:CDS |
| GTATTTCTTACTCACAAGAA+CGG | 0.581176 | 6.1:+59726293 | None:intergenic |
| TTGTTTAAGATTGAGAGAAG+TGG | 0.588206 | 6.1:-59725976 | MS.gene80293:CDS |
| AGAGGGTGGTAAGTAATGTA+GGG | 0.588469 | 6.1:+59726400 | None:intergenic |
| CCAATATTATTACATAAACC+AGG | 0.588965 | 6.1:+59725907 | None:intergenic |
| CCCACCACCAGTGATACACC+TGG | 0.602282 | 6.1:-59725925 | MS.gene80293:CDS |
| GTGAAAGTGGTGGTGGACTG+AGG | 0.603007 | 6.1:-59726254 | MS.gene80293:CDS |
| AGTAGGTGGCTAGGGCAAAG+AGG | 0.612636 | 6.1:+59726370 | None:intergenic |
| GGTTTCATTGAACCATGGGT+AGG | 0.618743 | 6.1:-59726039 | MS.gene80293:CDS |
| AAGTGGGTGGTAGTTAAAGG+TGG | 0.629514 | 6.1:-59726060 | MS.gene80293:CDS |
| AAAGGATAATGGAAAGTAGG+TGG | 0.636765 | 6.1:+59726356 | None:intergenic |
| GGCAAAGAGGAAGAAATAGA+GGG | 0.646580 | 6.1:+59726383 | None:intergenic |
| AAAGAGGAAGAAATAGAGGG+TGG | 0.652446 | 6.1:+59726386 | None:intergenic |
| CCACCACCAATACCTACCCA+TGG | 0.653181 | 6.1:+59726027 | None:intergenic |
| TGGCCAGCCGGTGAAAGTGG+TGG | 0.668540 | 6.1:-59726264 | MS.gene80293:CDS |
| ATTTCTTACTCACAAGAACG+GGG | 0.680212 | 6.1:+59726295 | None:intergenic |
| TGCTGAATCCTCCAAGTGGG+TGG | 0.681258 | 6.1:-59726073 | MS.gene80293:CDS |
| CCAGGTGTATCACTGGTGGT+GGG | 0.686983 | 6.1:+59725925 | None:intergenic |
| TAAACCAGGTGTATCACTGG+TGG | 0.706773 | 6.1:+59725921 | None:intergenic |
| ATGTGCTGAATCCTCCAAGT+GGG | 0.714019 | 6.1:-59726076 | MS.gene80293:CDS |
| AATGTGCTGAATCCTCCAAG+TGG | 0.759346 | 6.1:-59726077 | MS.gene80293:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTTTAGATAATGAAAA+TGG | - | chr6.1:59726311-59726330 | MS.gene80293:CDS | 15.0% |
| !! | TGAGTAAGAAATACTTTATT+TGG | - | chr6.1:59725910-59725929 | MS.gene80293:CDS | 20.0% |
| !!! | AAATCATTGATATTTTCTGT+TGG | + | chr6.1:59726047-59726066 | None:intergenic | 20.0% |
| !!! | AATCATTGATATTTTCTGTT+GGG | + | chr6.1:59726046-59726065 | None:intergenic | 20.0% |
| ! | ATCAATGAATACAACTTCAA+AGG | + | chr6.1:59726369-59726388 | None:intergenic | 25.0% |
| ! | CCAATATTATTACATAAACC+AGG | + | chr6.1:59726290-59726309 | None:intergenic | 25.0% |
| ! | CCTGGTTTATGTAATAATAT+TGG | - | chr6.1:59726287-59726306 | MS.gene80293:CDS | 25.0% |
| ! | TCAATGAATACAACTTCAAA+GGG | + | chr6.1:59726368-59726387 | None:intergenic | 25.0% |
| !!! | AATGGTAAGAGTATTATAGA+TGG | - | chr6.1:59726194-59726213 | MS.gene80293:CDS | 25.0% |
| ACAACTTGAGTAAAGGATAA+TGG | + | chr6.1:59725852-59725871 | None:intergenic | 30.0% | |
| GAACAAGTGAAGGATAAAAA+TGG | - | chr6.1:59725873-59725892 | MS.gene80293:CDS | 30.0% | |
| GTATTTCTTACTCACAAGAA+CGG | + | chr6.1:59725904-59725923 | None:intergenic | 30.0% | |
| TATTTCTTACTCACAAGAAC+GGG | + | chr6.1:59725903-59725922 | None:intergenic | 30.0% | |
| TTGTTCAACAACTTGAGTAA+AGG | + | chr6.1:59725859-59725878 | None:intergenic | 30.0% | |
| ! | TTGTTTAAGATTGAGAGAAG+TGG | - | chr6.1:59726218-59726237 | MS.gene80293:CDS | 30.0% |
| !! | AGTAAAGGATAATGGAAAGT+AGG | + | chr6.1:59725844-59725863 | None:intergenic | 30.0% |
| !!! | ATTGAGAGAAGTGGTTTTTT+TGG | - | chr6.1:59726227-59726246 | MS.gene80293:CDS | 30.0% |
| ATTTCTTACTCACAAGAACG+GGG | + | chr6.1:59725902-59725921 | None:intergenic | 35.0% | |
| TCTGTTGGGATAAATGTTAG+TGG | + | chr6.1:59726032-59726051 | None:intergenic | 35.0% | |
| ! | AAATACTTTATTTGGCCAGC+CGG | - | chr6.1:59725918-59725937 | MS.gene80293:CDS | 35.0% |
| ! | TCAAGTTGTTGAACAAGTGA+AGG | - | chr6.1:59725863-59725882 | MS.gene80293:CDS | 35.0% |
| !! | AAAGGATAATGGAAAGTAGG+TGG | + | chr6.1:59725841-59725860 | None:intergenic | 35.0% |
| !! | TGTACAGCAAGCTTTTTCTA+AGG | - | chr6.1:59725992-59726011 | MS.gene80293:CDS | 35.0% |
| AAAGAGGAAGAAATAGAGGG+TGG | + | chr6.1:59725811-59725830 | None:intergenic | 40.0% | |
| AAGGTGGTTTCATTGAACCA+TGG | - | chr6.1:59726150-59726169 | MS.gene80293:CDS | 40.0% | |
| ACATAAACCAGGTGTATCAC+TGG | + | chr6.1:59726279-59726298 | None:intergenic | 40.0% | |
| AGAGGGTGGTAAGTAATGTA+GGG | + | chr6.1:59725797-59725816 | None:intergenic | 40.0% | |
| AGGTGGTTTCATTGAACCAT+GGG | - | chr6.1:59726151-59726170 | MS.gene80293:CDS | 40.0% | |
| ATTGAACCATGGGTAGGTAT+TGG | - | chr6.1:59726161-59726180 | MS.gene80293:CDS | 40.0% | |
| GGCAAAGAGGAAGAAATAGA+GGG | + | chr6.1:59725814-59725833 | None:intergenic | 40.0% | |
| TAATGGAAAGTAGGTGGCTA+GGG | + | chr6.1:59725835-59725854 | None:intergenic | 40.0% | |
| TAGAGGGTGGTAAGTAATGT+AGG | + | chr6.1:59725798-59725817 | None:intergenic | 40.0% | |
| TTGGGATAAATGTTAGTGGC+AGG | + | chr6.1:59726028-59726047 | None:intergenic | 40.0% | |
| ! | ATAATGGAAAGTAGGTGGCT+AGG | + | chr6.1:59725836-59725855 | None:intergenic | 40.0% |
| !! | AAAGCTTGCTGTACAACAAG+TGG | + | chr6.1:59725987-59726006 | None:intergenic | 40.0% |
| AAGTGGGTGGTAGTTAAAGG+TGG | - | chr6.1:59726134-59726153 | MS.gene80293:CDS | 45.0% | |
| AATGTGCTGAATCCTCCAAG+TGG | - | chr6.1:59726117-59726136 | MS.gene80293:CDS | 45.0% | |
| ACCTTTAACTACCACCCACT+TGG | + | chr6.1:59726135-59726154 | None:intergenic | 45.0% | |
| ATGTGCTGAATCCTCCAAGT+GGG | - | chr6.1:59726118-59726137 | MS.gene80293:CDS | 45.0% | |
| GGGCAAAGAGGAAGAAATAG+AGG | + | chr6.1:59725815-59725834 | None:intergenic | 45.0% | |
| GGTTTCATTGAACCATGGGT+AGG | - | chr6.1:59726155-59726174 | MS.gene80293:CDS | 45.0% | |
| TAAACCAGGTGTATCACTGG+TGG | + | chr6.1:59726276-59726295 | None:intergenic | 45.0% | |
| TCCAAGTGGGTGGTAGTTAA+AGG | - | chr6.1:59726131-59726150 | MS.gene80293:CDS | 45.0% | |
| TTTAACTACCACCCACTTGG+AGG | + | chr6.1:59726132-59726151 | None:intergenic | 45.0% | |
| !! | GGTATTGGTGGTGGTGTTAA+TGG | - | chr6.1:59726176-59726195 | MS.gene80293:CDS | 45.0% |
| GTTGAAGATGCTGCTCGATC+CGG | - | chr6.1:59726389-59726408 | MS.gene80293:CDS | 50.0% | |
| !! | GAACCATGGGTAGGTATTGG+TGG | - | chr6.1:59726164-59726183 | MS.gene80293:CDS | 50.0% |
| ACCAGGTGTATCACTGGTGG+TGG | + | chr6.1:59726273-59726292 | None:intergenic | 55.0% | |
| AGTAGGTGGCTAGGGCAAAG+AGG | + | chr6.1:59725827-59725846 | None:intergenic | 55.0% | |
| ATTTGGCCAGCCGGTGAAAG+TGG | - | chr6.1:59725927-59725946 | MS.gene80293:CDS | 55.0% | |
| CAGTCCACCACCACTTTCAC+CGG | + | chr6.1:59725940-59725959 | None:intergenic | 55.0% | |
| CCACCACCAATACCTACCCA+TGG | + | chr6.1:59726170-59726189 | None:intergenic | 55.0% | |
| CCAGGTGTATCACTGGTGGT+GGG | + | chr6.1:59726272-59726291 | None:intergenic | 55.0% | |
| TGCTGAATCCTCCAAGTGGG+TGG | - | chr6.1:59726121-59726140 | MS.gene80293:CDS | 55.0% | |
| !! | CCATGGGTAGGTATTGGTGG+TGG | - | chr6.1:59726167-59726186 | MS.gene80293:CDS | 55.0% |
| !! | GTGAAAGTGGTGGTGGACTG+AGG | - | chr6.1:59725940-59725959 | MS.gene80293:CDS | 55.0% |
| CCCACCACCAGTGATACACC+TGG | - | chr6.1:59726269-59726288 | MS.gene80293:CDS | 60.0% | |
| CCACCACCACTTTCACCGGC+TGG | + | chr6.1:59725936-59725955 | None:intergenic | 65.0% | |
| CCAGCCGGTGAAAGTGGTGG+TGG | - | chr6.1:59725933-59725952 | MS.gene80293:CDS | 65.0% | |
| TGGCCAGCCGGTGAAAGTGG+TGG | - | chr6.1:59725930-59725949 | MS.gene80293:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 59725789 | 59726427 | 59725789 | ID=MS.gene80293 |
| chr6.1 | mRNA | 59725789 | 59726427 | 59725789 | ID=MS.gene80293.t1;Parent=MS.gene80293 |
| chr6.1 | exon | 59725789 | 59726427 | 59725789 | ID=MS.gene80293.t1.exon1;Parent=MS.gene80293.t1 |
| chr6.1 | CDS | 59725789 | 59726427 | 59725789 | ID=cds.MS.gene80293.t1;Parent=MS.gene80293.t1 |
| Gene Sequence |
| Protein sequence |
