AlfalfaGEDB | MS.gene062331

M. sativa cultivar XinJiangDaYe / MS.gene062331

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0016829 GO:0016840 GO:0016843 GO:0016844
PFAM: PF01436.24 PF03088.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062331.t1	XP_024638953.1	96.6	319	11	0	55	373	5	323	2.40E-176	628.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062331.t1	Q4V3D9	56.5	345	107	2	72	373	30	374	1.4e-108	394.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062331.t1	G7K3F5	96.6	319	11	0	55	373	5	323	1.7e-176	628.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene062331	0.826976	2.02E-54	-1.69E-46
MS.gene049369	MS.gene062331	0.815214	1.04E-51	-1.69E-46
MS.gene049491	MS.gene062331	0.821408	4.10E-53	-1.69E-46
MS.gene050301	MS.gene062331	0.808556	2.92E-50	-1.69E-46
MS.gene050432	MS.gene062331	0.811572	6.55E-51	-1.69E-46
MS.gene050670	MS.gene062331	0.801955	7.05E-49	-1.69E-46
MS.gene050767	MS.gene062331	0.802577	5.25E-49	-1.69E-46
MS.gene050770	MS.gene062331	0.803463	3.44E-49	-1.69E-46
MS.gene05101	MS.gene062331	0.819293	1.25E-52	-1.69E-46
MS.gene05105	MS.gene062331	0.82069	6.00E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene059296	MS.gene062331	PPI
MS.gene062331	MS.gene061292	PPI
MS.gene062331	MS.gene034366	PPI
MS.gene062331	MS.gene35719	PPI
MS.gene062331	MS.gene61630	PPI
MS.gene66625	MS.gene062331	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062331.t1	MTR_5g091980	96.552	319	11	0	55	373	5	323	0.0	633
MS.gene062331.t1	MTR_7g490350	69.505	364	64	3	57	373	6	369	3.25e-179	502
MS.gene062331.t1	MTR_7g090300	68.407	364	68	3	57	373	6	369	6.46e-176	494
MS.gene062331.t1	MTR_7g490330	74.455	321	78	2	56	373	6	325	9.70e-175	489
MS.gene062331.t1	MTR_2g087780	48.580	352	127	7	73	373	47	395	1.80e-104	313
MS.gene062331.t1	MTR_4g050190	46.439	351	135	7	73	373	44	391	3.34e-97	295
MS.gene062331.t1	MTR_2g099030	45.171	321	125	5	98	368	82	401	2.84e-85	265
MS.gene062331.t1	MTR_7g090320	42.169	332	138	5	95	372	55	386	1.51e-84	262
MS.gene062331.t1	MTR_7g090310	40.922	347	151	6	80	372	39	385	2.02e-84	262
MS.gene062331.t1	MTR_4g112670	40.059	337	170	4	57	371	8	334	1.12e-77	243

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062331.t1	AT3G57030	56.358	346	108	2	71	373	29	374	8.18e-137	395
MS.gene062331.t1	AT5G22020	47.507	341	128	5	81	373	58	395	6.73e-99	299
MS.gene062331.t1	AT5G22020	47.507	341	128	5	81	373	58	395	6.73e-99	299
MS.gene062331.t1	AT5G22020	47.507	341	128	5	81	373	58	395	6.73e-99	299
MS.gene062331.t1	AT1G08470	46.000	350	135	7	74	373	44	389	3.16e-98	297
MS.gene062331.t1	AT3G57010	44.414	367	151	8	52	370	6	367	2.24e-89	274
MS.gene062331.t1	AT2G41290	43.631	369	152	7	60	373	9	376	3.78e-88	271
MS.gene062331.t1	AT3G57020	44.510	337	139	6	78	370	34	366	6.36e-87	268
MS.gene062331.t1	AT2G41300	46.278	309	120	4	105	370	85	390	6.69e-87	268
MS.gene062331.t1	AT3G57020	42.730	337	131	6	78	370	34	352	6.93e-80	249

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Find 91 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATAAATACCAACATA+AGG	0.492238	5.1:-73583016	None:intergenic
AACAAGACTCTCCGGCCCAA+CGG	0.631984	5.1:-73580003	None:intergenic
AACGTAGTAGGACCTGCAGG+GGG	0.714485	5.1:+73582117	MS.gene062331:CDS
AAGTATGAAGGGGAGGAACG+TGG	0.583448	5.1:+73580080	MS.gene062331:CDS
AAGTGAATGTCTTATTAAGT+GGG	0.566171	5.1:+73582675	MS.gene062331:CDS
AATATAAGGAGAAATTCAGA+TGG	0.600334	5.1:+73582848	MS.gene062331:CDS
AATCCGTCCATCCGCCACGC+CGG	0.596699	5.1:-73580054	None:intergenic
AATTTCAAGGTCGAACTGTG+TGG	0.674077	5.1:+73581990	MS.gene062331:intron
ACACCGGCGTGGCGGATGGA+CGG	0.542691	5.1:+73580051	MS.gene062331:CDS
ACTCTCCGGCCCAACGGCTC+CGG	0.460954	5.1:-73579997	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTGAGTTAAGTGGCA+TGG	+	chr5.1:73581303-73581322	MS.gene062331:intron	30.0%
AAACATACCCTTATTCTACA+AGG	+	chr5.1:73581625-73581644	MS.gene062331:intron	30.0%
AAAGAAAGAATTTGGAAACG+TGG	-	chr5.1:73580167-73580186	None:intergenic	30.0%
AAATTTCCCCCAAAATTGTT+TGG	+	chr5.1:73580347-73580366	MS.gene062331:intron	30.0%
CAAAATGCAGATAAAGTTGA+TGG	-	chr5.1:73582300-73582319	None:intergenic	30.0%
CTATAAAGTTGAGTGATGAA+GGG	+	chr5.1:73582900-73582919	MS.gene062331:CDS	30.0%
CTGAAAACAGATAGAAGATT+AGG	-	chr5.1:73581727-73581746	None:intergenic	30.0%
GAAAAAGTCAATAACTCAAC+TGG	-	chr5.1:73579744-73579763	None:intergenic	30.0%
GAAATATTAGAAATCGTGGA+AGG	+	chr5.1:73582923-73582942	MS.gene062331:CDS	30.0%
GAATTTCTCCTTATATTGTC+CGG	-	chr5.1:73582845-73582864	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	73578135	73583042	73578135	ID=MS.gene062331
chr5.1	mRNA	73578135	73583042	73578135	ID=MS.gene062331.t1;Parent=MS.gene062331
chr5.1	exon	73578135	73578297	73578135	ID=MS.gene062331.t1.exon1;Parent=MS.gene062331.t1
chr5.1	CDS	73578135	73578297	73578135	ID=cds.MS.gene062331.t1;Parent=MS.gene062331.t1
chr5.1	exon	73579880	73580135	73579880	ID=MS.gene062331.t1.exon2;Parent=MS.gene062331.t1
chr5.1	CDS	73579880	73580135	73579880	ID=cds.MS.gene062331.t1;Parent=MS.gene062331.t1
chr5.1	exon	73581999	73582262	73581999	ID=MS.gene062331.t1.exon3;Parent=MS.gene062331.t1
chr5.1	CDS	73581999	73582262	73581999	ID=cds.MS.gene062331.t1;Parent=MS.gene062331.t1
chr5.1	exon	73582604	73583042	73582604	ID=MS.gene062331.t1.exon4;Parent=MS.gene062331.t1
chr5.1	CDS	73582604	73583042	73582604	ID=cds.MS.gene062331.t1;Parent=MS.gene062331.t1

Gene Sequence

>MS.gene062331

ATGATTAGGTCTAAAGAGACAGCGGTTATTGCGTCTTTCATCGATGTTGTCCTTCTTGAAGAGCTGTGTGAGAAAGTGGTAGCAGTGCCTATGAGAGATGTTATCCTTCTTGAAGAGCCGTGCGAGGAAGTGGTAGCAGACTCACTTCCTTTGAGAGATTTTGGTAAGTCCATAGTGGTGACGAACCCTAACTTGTCAAATTTTAATGCAAATGTTATTCATGATATGCAAGTTTTAGGGATTATCAGTGCTCCTACTGCAGTCCAACAAGCTATGAATTTCTTAAGTGATTCCTGGGCTAATATGTCTCAGAATGAAGAGATCGATGATTTGGCTGATCATCAATTTCAATTGGTGGTTCCAAGAAAAAAGAAAAAGTCAAAGCCGGTGACTAAGGCTAGCAAAGGGTTCAAGTTGGTTCTTCCAACCGAGCGCCTCGCTAGTTTTTAAGGGATAGTGGTCCCTCTTGCTTTTAGTTCGCTCTATCTCTTTTGATCTTACTTTTTGCTGTTTCTTGGAGGGTTTCGGTTTATGTCTCCCCATTTTTGTACTTTTATCTTTCTTTTAATATAATTTTAGGGTGAAACAGCAGGAGACCCCTCTGCTCCCCATAATCTTTTGCTTAAAAAAAAAAATTAAGTAAATTTTATATTCTTGAAAAAAAAGTAAAGTAAAAATAGGTTAATTTTTCCTAACAAATATATTTTTGAAATGGAAAGTAGTCGAAAAAAAAAACTACTGGTTACCAGACCAGAAAATGAGACACCACAAAAACTAGGAAAACTTGAGACACCTTAATAGATGCTCATTGAAAATCCATATCAACAAAAAGCTATCTTCTGCGCGATGCTGCTTCCCAAAAAAACAACCAATTTCATCATTATTGATACAATGAACAACAAGGTCGATCGGCCTAATATATTTGTAGGTCTAAAGCCAATTTTAAATTAAGGTCTTTTAAGTATGTTGACAGATAAACATAAAAATTAAAAACACTAAATATGCAATTTTATTTGAGGCATGTCGAACACTAAATGTAAATAAAACTCTCGATGAGTGTTTGAACATTGATTCATCAAGTAGAGAGTGTAATTTCTTGTGTTAGATTCAACCTCATTAGCACTTTAAACAAAAAATTCAGTTTAATTAATAATATACGTTGAAAATAATATTTAATATAGACATTATTTACCAATTGTAAAACCTTGAAATAAAAAAATAGTATTGAATTCTAATGTAAATATAAATTACTACAAGTCTAAAACTCTCCATTTAACTACGCGTGCACAACTGTTTAAAGAATTTGACTTGCAGAAATATATTTAAAGCAAATAAGATTTAGGACCTAATTAATACGAGATCTAAAAATTTGGAGGCCTAAAACCCGTGTTTTAGTGGCAGACCACTTCGACCAGCCCCTAAACAACCACCTTCAAATCAGACTCAAACAAACAAAATTCCACCGTTTAGTCTGCTTCAAATTTTTAGCAAAATCATACATCCAAACACAATTATCATCCCTTCTCAATCATGCACCACCTACAAGCTCTTGACGATTTTCATTTACATTGGTATTAACGAATTCCACGTTTTTTCAAATATGGATCCAGTTGAGTTATTGACTTTTTCTCAGTAGGACCCTGGTGGAGCACCCTCGTGAATGCATGCATGTTAAATATTAATAACTCTAAGGTATTGACTTCAAACAACATTTTCTCTTTCATTTGTAAATATGAACTTCAAAGACAGCATCCATGCTGCAACTTTTCTTGCACTCTTCTCTTGCATCTTTGCACTCTTTTCATCGGTTCCTATTTCTGGATCAAAGGACAGTCTCCAGGCTGATCGGTTACTCCATGTCACCGGAGCCGTTGGGCCGGAGAGTCTTGTTTTTGATAGTCACGGCGAAGGACCATACACCGGCGTGGCGGATGGACGGATTTTGAAGTATGAAGGGGAGGAACGTGGTTGGACTGAATTTGCTGTCACTAGTTCCAATAGGTAATAGAAATATGCACATTTGGTGTTTCCACGTTTCCAAATTCTTTCTTTATTGGTATTCTTTTTTTGGTACAATTTAATTTTGGTTTGATTCCACGTTTCCAAATTCTTCCTTTATTGGTATTCTTCTTTTGGTACAATTTAATTTTATTTACTTTTAATTTAGATTATTAGTGACTAGGGAGTAGGGAGACTTAAAATTTCCCCCAAAAAATTTCCCCCAAAATTGTTTGGATATAGGAAATTGTTTGGATATAGTAATATAAAATTGTTTGGATATAGTAATATAAAATTTCAATTTAATTTTATCCAAACAATTTTTTTAAAATTGATTACAATTTAAATTGATTACAATTTAAATTTCCCCCAATTTTTTTTATAACTAGATTATTGACTCAAAATTTCCCCCAAAAAAATTGATTACAATGAAATTTTATATTACTATATCCAAACAATTTTTTTATAACTGAAAGCAATTTAATTGAACCATTTGAATTTCCTAGAACTTTAAATTATTAAAAAAAAAAATTGGAATTATCTCATTCAAACACCTCTAAGATTGGATGTTTTGAGGGAATTCAAATCCTTCTAGCTAAATTTCATTGTTTGGATGATTAATTTAGTAAATTTTCAAAACGATTAAATTTATGATGTATTTTTCAAATTTTGCAAGTTGGGCACCCATATTTATAAATATTAAAATGTTCTAATTGACCCCTATAAATTATTCAAGAAGTGCAAGTTGGCTCCTAAAATTTTTAAAATTCCAAATTAACCCTCAATTTTTTCAAAATTTGCAGTTTGGTCCTTACTTTTCAATTTTCAAATTTGACCTTTTTTTTTTTTACAAAAGTAGTAAAAAAATGTTAACAATGAAATCTAGTATACCTCTATCCAAACAAATTATTTATAAAGAAAAAAAGACAATGTAATTGAATCATTTGAATTGGTTAAACTTCTAAATTATCTAATATTTTCAATTAAGTCATTAAACATACTCTAAAAAGTTAGGGTCAATGGTCCACAAGTTATAGATCAAGTGACAATCATGCCAAAATTGCTAGATCGGACATTGTAACCGGAGTTTCAACCCCAACGGCTCCTCCATTTAAGCGTGTGATTTTTCAATGACTATTGACTAGTGTCTTTTCATCTATCTACCTCAAAAAAAATTGAGTTAAGTGGCATGGTTTTGCATGATAGCAGTATAAAAGACTTAGACGTTGTTTGGATAAACAATTTGATTAAGCGCTTATAACACAAACACTTATCATATGTGTTTCTGCATACGTTATTTCCACAACAAAAGATTAAATGAAATTAAATTGTTTCCATATAAATTATAAATCATTTTCTTAAGCTATTATGTTGCGCTTGCGAAAATAAGCTAAAAATAGCTTGGGAAACATGTCCTAAGTTGTTTTTCAAAGCTCTCCCAAACAGTATCGCTAGGGTTTATGTAAGTGGATAAACTTAAATAAGTCAATTTAAACATACCCTTATTCTACAAGGCAAGCAAACAAGAAAGTGAATCTCTACCTTTTGTTTCAAACGGTTTCATCATTGTTTGAGAATGCAAGCAAGGAGACCTAATCTTCTATCTGTTTTCAGACATTGATACACTTGCAAATTGTGCAAGAATGTTTCACTTACTAGTTGTTCTAGTAAATATTTCGATGAAATAATGATAAACAATCTCAGTTTAATTTTTTTCATGGTACTTTAGTTTTAATAGCTACTTTTTTGTCCGAGGATATGTACAACAAGGTTATACACTAATTGTTGTATTTGAATGTCATGTAAGTCATACTTATATTTGCATTTTCTTATGAATTTAATGAGATTAGTTGTATGAATTTCAAGGTCGAACTGTGTGGTTCCATTCGCACCAGAGTTAGAGGATATTTGTGGGAGGCCACTAGGACTAAGATTTGATAAGAAAAATGGAGATTTGTACATTGTTGATGCCTACCTTGGCCTTAACGTAGTAGGACCTGCAGGGGGTTTGGCCACACAGTTAGCAACAGAAGCTGAAGGCACACCCTTTCGCTTCAACAATGACATGGACATTAGTGAAGATGAAGATGTGATTTACTTCACTGATTCAAGCACAGTCTATCAGAGAAGGTAAGTTCAACACTAAACAATACCTTATTTTCTACCATCAACTTTATCTGCATTTTGTTAAACAACATTGCTATTGATTATGAACAATTTTTTTACGAAATACAAATGAAATGATTAATACTTTGTTTTTGGGCAAAGTTTGATTTGTTCACTTGAGTTCAGATAGGGAGATGGTGGCTTTGAGGAAGCGAAGTAAAGAGAAAAATCTTAACCATTTTTTATAGTGATTGTGTAGATAAGAATAAATGAATCCTTACAATTAATATTTTTTTTTTTAATTTTGAAATATTTTAACAATATAAATTAAATTTGATCTATATGTTGGTCACTTTTGTTTGTAGGCAAATTCCGCTTTTACTTCTTAGCGGAGACAAAACTGGAAGGTTAATGAAATACGACAAGTCAACGAGAGAAGTGAATGTCTTATTAAGTGGGCTTAATTATCCCAACGGTGTTTGTTTAAGCAAAGACGGTTTATTTCTTCTAGTAGGTGAAACTTCGACTTTCCGGATTCTTCGACTTTGGCTTCATGGCCCTAATGCTGGCCAAGTCAATATTTTTGCTGTTCTTCCAGGTTATCCGGACAATATAAGGAGAAATTCAGATGGGCAGTTTTGGGTTGCTTTGCATAATGCAGCTATAAAGTTGAGTGATGAAGGGGAAATATTAGAAATCGTGGAAGGAAAGACCATGAGATATGTCAGTGAAGCGGATGAAAAAGATGGAAAACTTTTGATTGGATCGGTGTTAATGCCTTATGTTGGTATTTATAGTTTATGA

Protein sequence

>MS.gene062331.t1

MIRSKETAVIASFIDVVLLEELCEKVVAVPMRDVILLEEPCEEVVADSLPLRDFDSIHAATFLALFSCIFALFSSVPISGSKDSLQADRLLHVTGAVGPESLVFDSHGEGPYTGVADGRILKYEGEERGWTEFAVTSSNRSNCVVPFAPELEDICGRPLGLRFDKKNGDLYIVDAYLGLNVVGPAGGLATQLATEAEGTPFRFNNDMDISEDEDVIYFTDSSTVYQRRQIPLLLLSGDKTGRLMKYDKSTREVNVLLSGLNYPNGVCLSKDGLFLLVGETSTFRILRLWLHGPNAGQVNIFAVLPGYPDNIRRNSDGQFWVALHNAAIKLSDEGEILEIVEGKTMRYVSEADEKDGKLLIGSVLMPYVGIYSL