Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064336.t1 | KEH29683.1 | 99.8 | 407 | 1 | 0 | 1 | 407 | 1 | 407 | 1.40E-238 | 835.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064336.t1 | A8MRC7 | 77.1 | 407 | 93 | 0 | 1 | 407 | 1 | 407 | 4.0e-194 | 678.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064336.t1 | A0A072UKR4 | 99.8 | 407 | 1 | 0 | 1 | 407 | 1 | 407 | 1.0e-238 | 835.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene064336 | 0.854885 | 9.13E-62 | -1.69E-46 |
| MS.gene049178 | MS.gene064336 | 0.808172 | 3.53E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene064336 | 0.81955 | 1.09E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene064336 | 0.827337 | 1.65E-54 | -1.69E-46 |
| MS.gene049807 | MS.gene064336 | 0.81968 | 1.02E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene064336 | 0.816624 | 5.02E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene064336 | 0.811469 | 6.89E-51 | -1.69E-46 |
| MS.gene050551 | MS.gene064336 | 0.816039 | 6.79E-52 | -1.69E-46 |
| MS.gene050556 | MS.gene064336 | 0.835818 | 1.34E-56 | -1.69E-46 |
| MS.gene050629 | MS.gene064336 | -0.803972 | 2.70E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene064336 | 0.805837 | 1.10E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene064336 | 0.8204 | 7.00E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene064336 | 0.82979 | 4.23E-55 | -1.69E-46 |
| MS.gene051029 | MS.gene064336 | 0.808893 | 2.48E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene064336 | 0.811536 | 6.67E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene064336 | 0.800374 | 1.49E-48 | -1.69E-46 |
| MS.gene051343 | MS.gene064336 | 0.809141 | 2.19E-50 | -1.69E-46 |
| MS.gene051490 | MS.gene064336 | 0.81505 | 1.13E-51 | -1.69E-46 |
| MS.gene051856 | MS.gene064336 | 0.802702 | 4.95E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene064336 | 0.852282 | 5.11E-61 | -1.69E-46 |
| MS.gene052335 | MS.gene064336 | 0.822889 | 1.86E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene064336 | 0.845995 | 2.87E-59 | -1.69E-46 |
| MS.gene052516 | MS.gene064336 | 0.813432 | 2.57E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene064336 | 0.85816 | 9.97E-63 | -1.69E-46 |
| MS.gene052932 | MS.gene064336 | 0.826695 | 2.36E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene064336 | 0.810781 | 9.72E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene064336 | 0.828426 | 9.05E-55 | -1.69E-46 |
| MS.gene053144 | MS.gene064336 | 0.809548 | 1.79E-50 | -1.69E-46 |
| MS.gene053164 | MS.gene064336 | 0.809285 | 2.04E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene064336 | 0.847716 | 9.70E-60 | -1.69E-46 |
| MS.gene05458 | MS.gene064336 | 0.806802 | 6.89E-50 | -1.69E-46 |
| MS.gene054943 | MS.gene064336 | 0.807828 | 4.18E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene064336 | 0.826961 | 2.03E-54 | -1.69E-46 |
| MS.gene055313 | MS.gene064336 | 0.848772 | 4.95E-60 | -1.69E-46 |
| MS.gene055314 | MS.gene064336 | 0.812489 | 4.13E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene064336 | 0.805607 | 1.23E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene064336 | 0.840926 | 6.48E-58 | -1.69E-46 |
| MS.gene055513 | MS.gene064336 | 0.853836 | 1.84E-61 | -1.69E-46 |
| MS.gene056045 | MS.gene064336 | 0.802661 | 5.05E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene064336 | 0.828567 | 8.37E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene064336 | 0.839634 | 1.41E-57 | -1.69E-46 |
| MS.gene056390 | MS.gene064336 | 0.81587 | 7.41E-52 | -1.69E-46 |
| MS.gene056522 | MS.gene064336 | -0.812265 | 4.62E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene064336 | 0.810024 | 1.42E-50 | -1.69E-46 |
| MS.gene056831 | MS.gene064336 | 0.806087 | 9.75E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene064336 | 0.815124 | 1.09E-51 | -1.69E-46 |
| MS.gene058330 | MS.gene064336 | 0.809872 | 1.53E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene064336 | 0.800451 | 1.43E-48 | -1.69E-46 |
| MS.gene058638 | MS.gene064336 | 0.83641 | 9.51E-57 | -1.69E-46 |
| MS.gene058639 | MS.gene064336 | 0.83985 | 1.24E-57 | -1.69E-46 |
| MS.gene058852 | MS.gene064336 | 0.822972 | 1.78E-53 | -1.69E-46 |
| MS.gene059144 | MS.gene064336 | 0.819088 | 1.40E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene064336 | 0.849807 | 2.55E-60 | -1.69E-46 |
| MS.gene059171 | MS.gene064336 | 0.841145 | 5.67E-58 | -1.69E-46 |
| MS.gene059227 | MS.gene064336 | 0.805538 | 1.27E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene064336 | 0.813241 | 2.83E-51 | -1.69E-46 |
| MS.gene060400 | MS.gene064336 | 0.805914 | 1.06E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene064336 | 0.80383 | 2.89E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene064336 | 0.804824 | 1.79E-49 | -1.69E-46 |
| MS.gene060870 | MS.gene064336 | 0.800777 | 1.23E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene064336 | 0.807342 | 5.30E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene064336 | 0.832311 | 1.02E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene064336 | 0.850362 | 1.78E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064336.t1 | MTR_4g048320 | 99.754 | 407 | 1 | 0 | 1 | 407 | 1 | 407 | 0.0 | 847 |
| MS.gene064336.t1 | MTR_4g048320 | 99.412 | 340 | 2 | 0 | 68 | 407 | 10 | 349 | 0.0 | 707 |
| MS.gene064336.t1 | MTR_2g088270 | 79.607 | 407 | 78 | 2 | 1 | 407 | 1 | 402 | 0.0 | 681 |
| MS.gene064336.t1 | MTR_3g073370 | 63.452 | 394 | 136 | 3 | 15 | 407 | 9 | 395 | 0.0 | 529 |
| MS.gene064336.t1 | MTR_3g073370 | 63.291 | 395 | 136 | 4 | 15 | 407 | 9 | 396 | 0.0 | 525 |
| MS.gene064336.t1 | MTR_4g013305 | 61.750 | 400 | 121 | 4 | 8 | 407 | 11 | 378 | 0.0 | 520 |
| MS.gene064336.t1 | MTR_4g035490 | 54.847 | 392 | 158 | 4 | 16 | 405 | 7 | 381 | 8.22e-162 | 460 |
| MS.gene064336.t1 | MTR_5g009700 | 47.692 | 260 | 128 | 3 | 98 | 356 | 80 | 332 | 3.25e-80 | 250 |
| MS.gene064336.t1 | MTR_5g009700 | 47.431 | 253 | 125 | 3 | 105 | 356 | 1 | 246 | 1.72e-78 | 243 |
| MS.gene064336.t1 | MTR_3g090600 | 48.846 | 260 | 125 | 4 | 98 | 356 | 80 | 332 | 1.83e-78 | 246 |
| MS.gene064336.t1 | MTR_3g090600 | 48.846 | 260 | 123 | 5 | 98 | 356 | 80 | 330 | 4.96e-77 | 242 |
| MS.gene064336.t1 | MTR_1g012800 | 43.893 | 262 | 136 | 5 | 96 | 356 | 85 | 336 | 4.32e-68 | 219 |
| MS.gene064336.t1 | MTR_3g090600 | 48.085 | 235 | 111 | 5 | 98 | 328 | 80 | 307 | 1.71e-62 | 204 |
| MS.gene064336.t1 | MTR_3g090600 | 48.085 | 235 | 109 | 6 | 98 | 328 | 80 | 305 | 3.34e-61 | 200 |
| MS.gene064336.t1 | MTR_8g463930 | 35.849 | 265 | 155 | 7 | 132 | 394 | 77 | 328 | 1.03e-49 | 171 |
| MS.gene064336.t1 | MTR_2g078030 | 35.496 | 262 | 152 | 7 | 135 | 393 | 74 | 321 | 1.90e-49 | 171 |
| MS.gene064336.t1 | MTR_2g078030 | 36.842 | 228 | 134 | 5 | 135 | 360 | 74 | 293 | 1.19e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064336.t1 | AT1G05170 | 77.150 | 407 | 93 | 0 | 1 | 407 | 1 | 407 | 0.0 | 688 |
| MS.gene064336.t1 | AT2G32430 | 75.061 | 409 | 100 | 2 | 1 | 407 | 1 | 409 | 0.0 | 643 |
| MS.gene064336.t1 | AT4G26940 | 72.613 | 398 | 105 | 2 | 10 | 407 | 14 | 407 | 0.0 | 601 |
| MS.gene064336.t1 | AT1G05170 | 74.581 | 358 | 91 | 0 | 1 | 358 | 1 | 358 | 0.0 | 587 |
| MS.gene064336.t1 | AT1G11730 | 60.636 | 409 | 132 | 5 | 1 | 406 | 1 | 383 | 0.0 | 520 |
| MS.gene064336.t1 | AT1G32930 | 60.298 | 403 | 151 | 4 | 6 | 407 | 5 | 399 | 0.0 | 509 |
| MS.gene064336.t1 | AT1G77810 | 59.950 | 397 | 135 | 5 | 11 | 404 | 6 | 381 | 6.53e-177 | 498 |
| MS.gene064336.t1 | AT1G77810 | 59.500 | 400 | 135 | 6 | 11 | 404 | 6 | 384 | 1.32e-174 | 493 |
| MS.gene064336.t1 | AT1G33430 | 59.091 | 396 | 149 | 6 | 16 | 407 | 7 | 393 | 4.33e-164 | 466 |
| MS.gene064336.t1 | AT1G33430 | 57.921 | 404 | 149 | 7 | 16 | 407 | 7 | 401 | 6.78e-161 | 458 |
| MS.gene064336.t1 | AT1G22015 | 53.885 | 399 | 164 | 4 | 15 | 407 | 11 | 395 | 9.26e-156 | 445 |
| MS.gene064336.t1 | AT4G26940 | 66.052 | 271 | 89 | 1 | 10 | 280 | 14 | 281 | 7.32e-124 | 361 |
| MS.gene064336.t1 | AT1G33430 | 56.913 | 311 | 121 | 6 | 16 | 322 | 7 | 308 | 7.29e-111 | 328 |
| MS.gene064336.t1 | AT5G53340 | 45.620 | 274 | 134 | 6 | 98 | 370 | 76 | 335 | 7.20e-78 | 244 |
| MS.gene064336.t1 | AT5G53340 | 46.899 | 258 | 129 | 4 | 98 | 354 | 76 | 326 | 9.65e-78 | 244 |
| MS.gene064336.t1 | AT4G32120 | 45.802 | 262 | 130 | 6 | 96 | 356 | 85 | 335 | 2.82e-70 | 225 |
| MS.gene064336.t1 | AT2G25300 | 43.511 | 262 | 136 | 5 | 96 | 356 | 8 | 258 | 8.61e-69 | 219 |
| MS.gene064336.t1 | AT2G25300 | 43.969 | 257 | 130 | 5 | 101 | 356 | 93 | 336 | 1.04e-67 | 218 |
| MS.gene064336.t1 | AT2G26100 | 37.023 | 262 | 148 | 7 | 135 | 393 | 107 | 354 | 2.60e-51 | 176 |
| MS.gene064336.t1 | AT1G53290 | 34.601 | 263 | 155 | 7 | 135 | 394 | 83 | 331 | 6.19e-48 | 167 |
| MS.gene064336.t1 | AT3G14960 | 34.100 | 261 | 155 | 7 | 135 | 392 | 81 | 327 | 9.16e-48 | 166 |
| MS.gene064336.t1 | AT2G26100 | 37.607 | 234 | 136 | 5 | 135 | 366 | 107 | 332 | 1.99e-46 | 163 |
Find 86 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAGGAGCTTGGTTTAT+TGG | 0.210268 | 4.4:-52743101 | MS.gene064336:CDS |
| TTGCCACTGCTGTGAGCTTA+TGG | 0.241789 | 4.4:-52743814 | MS.gene064336:CDS |
| CATTGGAAGTTTGGCGAGTC+TGG | 0.279395 | 4.4:-52743327 | MS.gene064336:CDS |
| TTTATGGAGTGCTTCTTTCT+AGG | 0.298948 | 4.4:-52742532 | None:intergenic |
| GAGAAGGTGAAAATGCTTTA+TGG | 0.301896 | 4.4:-52742548 | MS.gene064336:CDS |
| GAACCTGAGCATTGGAAGTT+TGG | 0.307392 | 4.4:-52743336 | MS.gene064336:CDS |
| TCCAATTTAGTTACAAGATC+TGG | 0.320538 | 4.4:-52744942 | MS.gene064336:intron |
| TGGAGTATTCCTGAACAAAA+TGG | 0.340829 | 4.4:-52745133 | MS.gene064336:CDS |
| GAAGTGTAATATCTCAGAAA+TGG | 0.343150 | 4.4:-52746155 | MS.gene064336:CDS |
| ATTGTCATGCGCTTTGTAAT+TGG | 0.344864 | 4.4:-52744400 | MS.gene064336:CDS |
| CTCCTGTTTCAGAAGATATA+AGG | 0.357539 | 4.4:-52744680 | MS.gene064336:CDS |
| CTGGAATGCTCTTCACTAAC+AGG | 0.360031 | 4.4:-52746101 | MS.gene064336:intron |
| TTGTCTTTGCTGACAATTCA+AGG | 0.362315 | 4.4:+52743846 | None:intergenic |
| TTTGTGTTGCTTCATTTGAT+TGG | 0.363073 | 4.4:-52742629 | MS.gene064336:CDS |
| GAAAAGAAGGGACTCGGTTC+GGG | 0.366676 | 4.4:-52744589 | MS.gene064336:CDS |
| TGCCACTGCTGTGAGCTTAT+GGG | 0.367282 | 4.4:-52743813 | MS.gene064336:CDS |
| TACATTGGATGCATGAAATC+TGG | 0.384729 | 4.4:-52743472 | MS.gene064336:CDS |
| GTCCTTATATCTTCTGAAAC+AGG | 0.385267 | 4.4:+52744678 | None:intergenic |
| GGAAAAGAAGGGACTCGGTT+CGG | 0.389458 | 4.4:-52744590 | MS.gene064336:CDS |
| ACTTCCAATGCTCAGGTTCA+TGG | 0.389694 | 4.4:+52743340 | None:intergenic |
| AGACCGACAGCTTCAGAAAC+TGG | 0.394152 | 4.4:-52745103 | MS.gene064336:CDS |
| CTGCTTCAATAGCTCTATCT+AGG | 0.425000 | 4.4:+52744073 | None:intergenic |
| GTACATAGAAGGTGTGGAGA+AGG | 0.442264 | 4.4:-52742564 | MS.gene064336:CDS |
| GGAGCTGCAGTGGAATTTGT+AGG | 0.445573 | 4.4:-52742608 | MS.gene064336:CDS |
| TTAATACTGCCTTTAGCAGC+AGG | 0.450178 | 4.4:-52744611 | MS.gene064336:CDS |
| GATGATGTTCATGTAAATAT+AGG | 0.452270 | 4.4:-52743764 | MS.gene064336:intron |
| GGGACTCGGTTCGGGCTACT+TGG | 0.454841 | 4.4:-52744581 | MS.gene064336:CDS |
| TTTATGCAGAATCATGTTGA+AGG | 0.456059 | 4.4:-52743872 | MS.gene064336:intron |
| TCCTATTGACACATCCTCAT+TGG | 0.456204 | 4.4:+52743115 | None:intergenic |
| CTTTGCTGTGGCACTCCTCC+AGG | 0.460318 | 4.4:-52743047 | MS.gene064336:intron |
| TATGTATGGTGAGGATTTCA+AGG | 0.463369 | 4.4:-52744897 | MS.gene064336:CDS |
| GGATTAAAGAAGTACATAGA+AGG | 0.469286 | 4.4:-52742575 | MS.gene064336:CDS |
| GAATTTGTAGGTCCGCTGAT+AGG | 0.469957 | 4.4:-52742596 | MS.gene064336:CDS |
| CCTTTAGCAGCAGGAAAAGA+AGG | 0.471407 | 4.4:-52744602 | MS.gene064336:CDS |
| AAGTACTTCCGCCATGCCAC+AGG | 0.472843 | 4.4:-52743300 | MS.gene064336:CDS |
| AAGTGTAATATCTCAGAAAT+GGG | 0.475589 | 4.4:-52746154 | MS.gene064336:CDS |
| GGGCAAGAGAAAGTACCTTA+TGG | 0.476193 | 4.4:-52744643 | MS.gene064336:CDS |
| CTGTATTGAATGTAGAGCTT+TGG | 0.481497 | 4.4:-52744775 | MS.gene064336:intron |
| GCATGGAGATTTCTTGAGGC+TGG | 0.488147 | 4.4:-52744040 | MS.gene064336:intron |
| TGTCTCGGTAGTTTCTGTGC+TGG | 0.488168 | 4.4:-52746120 | MS.gene064336:CDS |
| TCGCCAAACTTCCAATGCTC+AGG | 0.496491 | 4.4:+52743333 | None:intergenic |
| GCCAATGAGGATGTGTCAAT+AGG | 0.497688 | 4.4:-52743116 | MS.gene064336:CDS |
| TTCAAATTTAGAGATGGACT+TGG | 0.502922 | 4.4:-52744742 | MS.gene064336:CDS |
| GAGTGCCACAGCAAAGTCTT+CGG | 0.512041 | 4.4:+52743054 | None:intergenic |
| TATTAATACCTACGACCATA+AGG | 0.514517 | 4.4:+52744628 | None:intergenic |
| GATGGACTTGGCTGCTGCGA+GGG | 0.515443 | 4.4:-52744730 | MS.gene064336:CDS |
| GACTATTTCAAATTTAGAGA+TGG | 0.518519 | 4.4:-52744748 | MS.gene064336:CDS |
| TGCGAATGGAAGGCGCAAGC+AGG | 0.529852 | 4.4:-52742657 | MS.gene064336:CDS |
| TCAAAACAACGGATATACAT+TGG | 0.538752 | 4.4:-52743487 | MS.gene064336:CDS |
| CAGCAGGAAAAGAAGGGACT+CGG | 0.538952 | 4.4:-52744595 | MS.gene064336:CDS |
| CGGGCTACTTGGTTGCCACA+AGG | 0.540034 | 4.4:-52744570 | MS.gene064336:intron |
| TATAAGGACGACTGAGTCGA+CGG | 0.542612 | 4.4:-52744664 | MS.gene064336:CDS |
| TCATTTGATTGGAGCTGCAG+TGG | 0.544715 | 4.4:-52742618 | MS.gene064336:CDS |
| AGGATGTGTCAATAGGAGCT+TGG | 0.557584 | 4.4:-52743109 | MS.gene064336:CDS |
| CGCGAAACTAGAGATATGTA+TGG | 0.560067 | 4.4:-52744911 | MS.gene064336:CDS |
| GATACCATGAACCTGAGCAT+TGG | 0.565176 | 4.4:-52743344 | MS.gene064336:CDS |
| AAGAAACTAGAGGAAGAGAA+AGG | 0.565582 | 4.4:-52744424 | MS.gene064336:CDS |
| TTACCAGTTTCTGAAGCTGT+CGG | 0.571354 | 4.4:+52745100 | None:intergenic |
| AGTTACAAGATCTGGAAATG+AGG | 0.572395 | 4.4:-52744934 | MS.gene064336:CDS |
| TAAATTGAATGTAGTTTCCG+AGG | 0.576758 | 4.4:-52745080 | MS.gene064336:CDS |
| TTAACTAGTGCTACATCAGG+AGG | 0.577145 | 4.4:-52744099 | MS.gene064336:intron |
| AGATAGAGCTATTGAAGCAG+AGG | 0.580020 | 4.4:-52744070 | MS.gene064336:CDS |
| CATACAACTGCCCTGTGGCA+TGG | 0.582197 | 4.4:+52743289 | None:intergenic |
| CTTTAGCAGCAGGAAAAGAA+GGG | 0.584908 | 4.4:-52744601 | MS.gene064336:CDS |
| AAAGAAGTACATAGAAGGTG+TGG | 0.587665 | 4.4:-52742570 | MS.gene064336:CDS |
| GAAGCAGAGGACAGAAAGCA+TGG | 0.588213 | 4.4:-52744057 | MS.gene064336:CDS |
| TACTTCTTTAATCCTATCAG+CGG | 0.588432 | 4.4:+52742584 | None:intergenic |
| TTAATGACGTGGAAAAGTAG+AGG | 0.591395 | 4.4:-52746192 | MS.gene064336:CDS |
| AAATTGAATGTAGTTTCCGA+GGG | 0.596196 | 4.4:-52745079 | MS.gene064336:CDS |
| AGAAAGTACCTTATGGTCGT+AGG | 0.607267 | 4.4:-52744636 | MS.gene064336:CDS |
| ATCCCATAAGCTCACAGCAG+TGG | 0.610258 | 4.4:+52743811 | None:intergenic |
| GAAAGCATGGAGATTTCTTG+AGG | 0.614966 | 4.4:-52744044 | MS.gene064336:CDS |
| AACTAGAGATATGTATGGTG+AGG | 0.616447 | 4.4:-52744906 | MS.gene064336:CDS |
| TTGGTTTATTGGACTTGACG+TGG | 0.621784 | 4.4:-52743090 | MS.gene064336:CDS |
| AGATGGACTTGGCTGCTGCG+AGG | 0.622009 | 4.4:-52744731 | MS.gene064336:CDS |
| TGCGCTTTGTAATTGGACAC+AGG | 0.622431 | 4.4:-52744393 | MS.gene064336:intron |
| ATAAGGACGACTGAGTCGAC+GGG | 0.634555 | 4.4:-52744663 | MS.gene064336:CDS |
| AGTACTTCCGCCATGCCACA+GGG | 0.639704 | 4.4:-52743299 | MS.gene064336:CDS |
| TCTTCATAAGTATGCCAATG+AGG | 0.642056 | 4.4:-52743129 | MS.gene064336:CDS |
| ATGTATGGTGAGGATTTCAA+GGG | 0.651553 | 4.4:-52744896 | MS.gene064336:CDS |
| TGACAAAAGAAAGAAACTAG+AGG | 0.651999 | 4.4:-52744434 | MS.gene064336:CDS |
| GTTCAAGAGTCAGTACGAAG+TGG | 0.682952 | 4.4:-52744705 | MS.gene064336:CDS |
| TTAGACACCGATCAAAACAA+CGG | 0.706941 | 4.4:-52743498 | MS.gene064336:CDS |
| ACAACTGCCCTGTGGCATGG+CGG | 0.712956 | 4.4:+52743292 | None:intergenic |
| GATGACCGAAGACTTTGCTG+TGG | 0.746568 | 4.4:-52743059 | MS.gene064336:CDS |
| AATAGCATACAACTGCCCTG+TGG | 0.783392 | 4.4:+52743284 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATATTATTATATTGTT+AGG | + | chr4.4:52745091-52745110 | None:intergenic | 10.0% |
| !! | CATACAAAAATAATAATAAT+TGG | + | chr4.4:52743908-52743927 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTTTGAAGAA+CGG | - | chr4.4:52744551-52744570 | MS.gene064336:intron | 10.0% |
| !! | GTTTATAATTATGAAATAAG+TGG | - | chr4.4:52742764-52742783 | MS.gene064336:intron | 15.0% |
| !!! | AAATTATTCTTTGATTTAGT+AGG | + | chr4.4:52745505-52745524 | None:intergenic | 15.0% |
| !!! | AAATTTTTTGTAATGAATCA+AGG | - | chr4.4:52745296-52745315 | MS.gene064336:intron | 15.0% |
| !!! | AAGTATACATTTTTTATAAC+TGG | + | chr4.4:52744828-52744847 | None:intergenic | 15.0% |
| !!! | GTTTTATGTAATTTTCAATT+TGG | - | chr4.4:52742669-52742688 | MS.gene064336:intron | 15.0% |
| !!! | TAGCTTTTCTTTAAAAAATT+GGG | - | chr4.4:52743062-52743081 | MS.gene064336:CDS | 15.0% |
| !! | AACTATTGAACATATTGTTT+GGG | - | chr4.4:52743502-52743521 | MS.gene064336:CDS | 20.0% |
| !! | AGATATGTTAATATCATAAC+AGG | - | chr4.4:52743563-52743582 | MS.gene064336:intron | 20.0% |
| !! | AGTTAACACTTTCAAATTAT+TGG | - | chr4.4:52746023-52746042 | MS.gene064336:intron | 20.0% |
| !! | ATAAGTTCAAATAAGTCAAT+CGG | + | chr4.4:52745765-52745784 | None:intergenic | 20.0% |
| !! | ATACAAACCTAAAAAGATAA+TGG | + | chr4.4:52745993-52746012 | None:intergenic | 20.0% |
| !! | ATCAAACTAAATCAAATCAA+TGG | - | chr4.4:52745525-52745544 | MS.gene064336:intron | 20.0% |
| !! | CAATAGTTAATCTAATACAA+TGG | + | chr4.4:52743490-52743509 | None:intergenic | 20.0% |
| !! | GATTCAAAATGCTTTAATAA+AGG | - | chr4.4:52744424-52744443 | MS.gene064336:CDS | 20.0% |
| !! | GTTAACACTTTCAAATTATT+GGG | - | chr4.4:52746024-52746043 | MS.gene064336:intron | 20.0% |
| !! | TAACTATTGAACATATTGTT+TGG | - | chr4.4:52743501-52743520 | MS.gene064336:CDS | 20.0% |
| !! | TACAAACCTAAAAAGATAAT+GGG | + | chr4.4:52745992-52746011 | None:intergenic | 20.0% |
| !! | TACATAAAACATAGAAAACA+GGG | + | chr4.4:52742659-52742678 | None:intergenic | 20.0% |
| !! | TATATGTATCATTTAGTAGT+AGG | - | chr4.4:52743327-52743346 | MS.gene064336:CDS | 20.0% |
| !! | TTACATAAAACATAGAAAAC+AGG | + | chr4.4:52742660-52742679 | None:intergenic | 20.0% |
| !!! | CTAGCTTTTCTTTAAAAAAT+TGG | - | chr4.4:52743061-52743080 | MS.gene064336:CDS | 20.0% |
| !!! | CTATTTTATTACTAGTGTTA+CGG | - | chr4.4:52744226-52744245 | MS.gene064336:intron | 20.0% |
| !!! | TACTTTTTTTTAATCAAGCA+AGG | + | chr4.4:52743705-52743724 | None:intergenic | 20.0% |
| !!! | TATACATTTTTTATAACTGG+TGG | + | chr4.4:52744825-52744844 | None:intergenic | 20.0% |
| !!! | TCTTTAAAAAATTGGGTAAA+GGG | - | chr4.4:52743069-52743088 | MS.gene064336:CDS | 20.0% |
| !!! | TTCTTTAAAAAATTGGGTAA+AGG | - | chr4.4:52743068-52743087 | MS.gene064336:CDS | 20.0% |
| ! | AAAAGATGAGAAAAGGAAAA+TGG | + | chr4.4:52744753-52744772 | None:intergenic | 25.0% |
| ! | AAAGATGAGAAAAGGAAAAT+GGG | + | chr4.4:52744752-52744771 | None:intergenic | 25.0% |
| ! | AAGTCATAACTCAACTATAT+TGG | - | chr4.4:52744517-52744536 | MS.gene064336:intron | 25.0% |
| ! | AAGTGTAATATCTCAGAAAT+GGG | - | chr4.4:52742568-52742587 | MS.gene064336:CDS | 25.0% |
| ! | AATTAAGCTGTTTATCCAAA+CGG | - | chr4.4:52745965-52745984 | MS.gene064336:intron | 25.0% |
| ! | AATTCGAAAATTGTAAGCAT+CGG | - | chr4.4:52743670-52743689 | MS.gene064336:intron | 25.0% |
| ! | ACTATTGAACATATTGTTTG+GGG | - | chr4.4:52743503-52743522 | MS.gene064336:CDS | 25.0% |
| ! | ACTTATGACTGATAAATAGA+TGG | + | chr4.4:52744501-52744520 | None:intergenic | 25.0% |
| ! | ATACATATCTATAAACCAGT+AGG | - | chr4.4:52745478-52745497 | MS.gene064336:intron | 25.0% |
| ! | GAAAAAACGTATAATTGATC+TGG | - | chr4.4:52744589-52744608 | MS.gene064336:CDS | 25.0% |
| ! | GACTATTTCAAATTTAGAGA+TGG | - | chr4.4:52743974-52743993 | MS.gene064336:intron | 25.0% |
| ! | GATGATGTTCATGTAAATAT+AGG | - | chr4.4:52744958-52744977 | MS.gene064336:intron | 25.0% |
| ! | GTATTACAAAAGATGAGAAA+AGG | + | chr4.4:52744760-52744779 | None:intergenic | 25.0% |
| ! | GTTAATATCATAACAGGATA+TGG | - | chr4.4:52743569-52743588 | MS.gene064336:intron | 25.0% |
| ! | TAAAGAAAAGCTAGCTATTA+AGG | + | chr4.4:52743055-52743074 | None:intergenic | 25.0% |
| ! | TGAACATATACAAACAAGAT+TGG | + | chr4.4:52745561-52745580 | None:intergenic | 25.0% |
| ! | TGTTTGTATATGTTCATATC+AGG | - | chr4.4:52745565-52745584 | MS.gene064336:intron | 25.0% |
| ! | TTAGTAGTAGGTATAATTCT+TGG | - | chr4.4:52743339-52743358 | MS.gene064336:CDS | 25.0% |
| !! | AAATAAGTGGATTTAGATCT+GGG | - | chr4.4:52742777-52742796 | MS.gene064336:intron | 25.0% |
| !! | CTTTAAAAAATTGGGTAAAG+GGG | - | chr4.4:52743070-52743089 | MS.gene064336:CDS | 25.0% |
| !!! | ATAACTGGAATTTGTTTCTA+AGG | + | chr4.4:52743197-52743216 | None:intergenic | 25.0% |
| !!! | CTTTTGATAACATGGATAAT+AGG | - | chr4.4:52744265-52744284 | MS.gene064336:intron | 25.0% |
| !!! | GATTTGTTCTTTTGATAACA+TGG | - | chr4.4:52744257-52744276 | MS.gene064336:intron | 25.0% |
| !!! | GTTGTTTTTATAAGTTTTGC+TGG | + | chr4.4:52745873-52745892 | None:intergenic | 25.0% |
| !!! | TATTAAAGCATTTTGAATCG+TGG | + | chr4.4:52744423-52744442 | None:intergenic | 25.0% |
| AAACAGTAAGTTATATGCAG+TGG | - | chr4.4:52743859-52743878 | MS.gene064336:CDS | 30.0% | |
| AAACCATAGAAGCAGATATA+TGG | + | chr4.4:52744192-52744211 | None:intergenic | 30.0% | |
| AAATTGAATGTAGTTTCCGA+GGG | - | chr4.4:52743643-52743662 | MS.gene064336:intron | 30.0% | |
| AACCATAGAAGCAGATATAT+GGG | + | chr4.4:52744191-52744210 | None:intergenic | 30.0% | |
| AACCTAAATCATGGTTTGAA+CGG | + | chr4.4:52745737-52745756 | None:intergenic | 30.0% | |
| AAGATGAGAAAAGGAAAATG+GGG | + | chr4.4:52744751-52744770 | None:intergenic | 30.0% | |
| ACACTTTCAAATTATTGGGT+TGG | - | chr4.4:52746028-52746047 | MS.gene064336:intron | 30.0% | |
| ACATTTGCAAGAATGCTTAT+TGG | - | chr4.4:52745797-52745816 | MS.gene064336:intron | 30.0% | |
| ACTGCATATAACTTACTGTT+TGG | + | chr4.4:52743860-52743879 | None:intergenic | 30.0% | |
| AGATCTTGTAACTAAATTGG+AGG | + | chr4.4:52743781-52743800 | None:intergenic | 30.0% | |
| ATTAAGCTGTTTATCCAAAC+GGG | - | chr4.4:52745966-52745985 | MS.gene064336:intron | 30.0% | |
| GAAGTGTAATATCTCAGAAA+TGG | - | chr4.4:52742567-52742586 | MS.gene064336:CDS | 30.0% | |
| GGTGTAAAAAATCTTTACAC+CGG | - | chr4.4:52743414-52743433 | MS.gene064336:intron | 30.0% | |
| TAAATTGAATGTAGTTTCCG+AGG | - | chr4.4:52743642-52743661 | MS.gene064336:intron | 30.0% | |
| TACTTCTTTAATCCTATCAG+CGG | + | chr4.4:52746141-52746160 | None:intergenic | 30.0% | |
| TATGCATAAGCATAACAACT+TGG | - | chr4.4:52745018-52745037 | MS.gene064336:intron | 30.0% | |
| TATTAATACCTACGACCATA+AGG | + | chr4.4:52744097-52744116 | None:intergenic | 30.0% | |
| TCAAAACAACGGATATACAT+TGG | - | chr4.4:52745235-52745254 | MS.gene064336:intron | 30.0% | |
| TCCAATTTAGTTACAAGATC+TGG | - | chr4.4:52743780-52743799 | MS.gene064336:CDS | 30.0% | |
| TCCAGATCTTGTAACTAAAT+TGG | + | chr4.4:52743784-52743803 | None:intergenic | 30.0% | |
| TGACAAAAGAAAGAAACTAG+AGG | - | chr4.4:52744288-52744307 | MS.gene064336:intron | 30.0% | |
| TGACGATTATGATTGATTGA+CGG | - | chr4.4:52743393-52743412 | MS.gene064336:intron | 30.0% | |
| TTCAAGAACAAATATTCACC+TGG | + | chr4.4:52745696-52745715 | None:intergenic | 30.0% | |
| TTTATGCAGAATCATGTTGA+AGG | - | chr4.4:52744850-52744869 | MS.gene064336:intron | 30.0% | |
| ! | AATTTTCGAATTACAACCCT+CGG | + | chr4.4:52743662-52743681 | None:intergenic | 30.0% |
| ! | GAAATAAGTGGATTTAGATC+TGG | - | chr4.4:52742776-52742795 | MS.gene064336:intron | 30.0% |
| ! | GGAAGTAAGTTGAAAACTTA+TGG | + | chr4.4:52745841-52745860 | None:intergenic | 30.0% |
| ! | GGATTAAAGAAGTACATAGA+AGG | - | chr4.4:52746147-52746166 | MS.gene064336:CDS | 30.0% |
| ! | TTATGTTTTCAGATTGCGAA+TGG | - | chr4.4:52746051-52746070 | MS.gene064336:intron | 30.0% |
| ! | TTCAAATTTAGAGATGGACT+TGG | - | chr4.4:52743980-52743999 | MS.gene064336:intron | 30.0% |
| !! | TTTGTGTTGCTTCATTTGAT+TGG | - | chr4.4:52746093-52746112 | MS.gene064336:intron | 30.0% |
| !! | TTTTTAACTAGTGCTACATC+AGG | - | chr4.4:52744620-52744639 | MS.gene064336:CDS | 30.0% |
| !!! | AAATTTCTCACTTTTGAGAC+AGG | + | chr4.4:52745282-52745301 | None:intergenic | 30.0% |
| !!! | CAATCTTTTTCAGCAACATT+GGG | - | chr4.4:52745190-52745209 | MS.gene064336:intron | 30.0% |
| !!! | TCAATCTTTTTCAGCAACAT+TGG | - | chr4.4:52745189-52745208 | MS.gene064336:intron | 30.0% |
| !!! | TGTATATCCGTTGTTTTGAT+CGG | + | chr4.4:52745234-52745253 | None:intergenic | 30.0% |
| AAAAAATACACTCCACCAAC+CGG | + | chr4.4:52743245-52743264 | None:intergenic | 35.0% | |
| AACTAGAGATATGTATGGTG+AGG | - | chr4.4:52743816-52743835 | MS.gene064336:CDS | 35.0% | |
| AAGAAACTAGAGGAAGAGAA+AGG | - | chr4.4:52744298-52744317 | MS.gene064336:intron | 35.0% | |
| AAGAACAAATATTCACCTGG+AGG | + | chr4.4:52745693-52745712 | None:intergenic | 35.0% | |
| AATCAAGTGGATGGTTATTG+TGG | - | chr4.4:52743526-52743545 | MS.gene064336:intron | 35.0% | |
| ACAGCACATTTGCATTAGTT+TGG | + | chr4.4:52743931-52743950 | None:intergenic | 35.0% | |
| ACCTAAATCATGGTTTGAAC+GGG | + | chr4.4:52745736-52745755 | None:intergenic | 35.0% | |
| AGTTACAAGATCTGGAAATG+AGG | - | chr4.4:52743788-52743807 | MS.gene064336:CDS | 35.0% | |
| ATATTGTTTGGGGAATCAAG+TGG | - | chr4.4:52743513-52743532 | MS.gene064336:CDS | 35.0% | |
| ATCCCATATATCTGCTTCTA+TGG | - | chr4.4:52744186-52744205 | MS.gene064336:intron | 35.0% | |
| ATCTGCCTTCTTCTTTATTC+CGG | - | chr4.4:52743223-52743242 | MS.gene064336:intron | 35.0% | |
| ATGTATGGTGAGGATTTCAA+GGG | - | chr4.4:52743826-52743845 | MS.gene064336:CDS | 35.0% | |
| ATTGTCATGCGCTTTGTAAT+TGG | - | chr4.4:52744322-52744341 | MS.gene064336:intron | 35.0% | |
| CTCCTGTTTCAGAAGATATA+AGG | - | chr4.4:52744042-52744061 | MS.gene064336:CDS | 35.0% | |
| CTGTATTGAATGTAGAGCTT+TGG | - | chr4.4:52743947-52743966 | MS.gene064336:intron | 35.0% | |
| GAGAAGGTGAAAATGCTTTA+TGG | - | chr4.4:52746174-52746193 | MS.gene064336:CDS | 35.0% | |
| GAGCAGGATATTAAGACAAA+AGG | + | chr4.4:52745171-52745190 | None:intergenic | 35.0% | |
| GGATCAAATTATGAACCTTG+TGG | + | chr4.4:52744170-52744189 | None:intergenic | 35.0% | |
| GTAAAAAATCTTTACACCGG+CGG | - | chr4.4:52743417-52743436 | MS.gene064336:intron | 35.0% | |
| GTGTTCTATGAGACTTTGTT+TGG | - | chr4.4:52742691-52742710 | MS.gene064336:intron | 35.0% | |
| TACATTGGATGCATGAAATC+TGG | - | chr4.4:52745250-52745269 | MS.gene064336:intron | 35.0% | |
| TATGTATGGTGAGGATTTCA+AGG | - | chr4.4:52743825-52743844 | MS.gene064336:CDS | 35.0% | |
| TCAATAGGAGCTTGGTTTAT+TGG | - | chr4.4:52745621-52745640 | MS.gene064336:intron | 35.0% | |
| TCTTCATAAGTATGCCAATG+AGG | - | chr4.4:52745593-52745612 | MS.gene064336:intron | 35.0% | |
| TTAGACACCGATCAAAACAA+CGG | - | chr4.4:52745224-52745243 | MS.gene064336:intron | 35.0% | |
| TTGGACTTACGATTACATCA+TGG | + | chr4.4:52743889-52743908 | None:intergenic | 35.0% | |
| TTGTCTTTGCTGACAATTCA+AGG | + | chr4.4:52744879-52744898 | None:intergenic | 35.0% | |
| ! | AAAGAAGTACATAGAAGGTG+TGG | - | chr4.4:52746152-52746171 | MS.gene064336:CDS | 35.0% |
| ! | GTTTGACTTTGTAACCTCAA+CGG | + | chr4.4:52743165-52743184 | None:intergenic | 35.0% |
| ! | TGGAGTATTCCTGAACAAAA+TGG | - | chr4.4:52743589-52743608 | MS.gene064336:intron | 35.0% |
| ! | TGGATTTAGATCTGGGATTA+TGG | - | chr4.4:52742784-52742803 | MS.gene064336:intron | 35.0% |
| ! | TGTTCTTTTCTTGTGTCTGT+TGG | - | chr4.4:52743755-52743774 | MS.gene064336:intron | 35.0% |
| ! | TTTGATTTAGTAGGACCTAC+TGG | + | chr4.4:52745496-52745515 | None:intergenic | 35.0% |
| !! | GACACTGTCATTGCTTTTAA+AGG | - | chr4.4:52744783-52744802 | MS.gene064336:intron | 35.0% |
| !! | GTCCTTATATCTTCTGAAAC+AGG | + | chr4.4:52744047-52744066 | None:intergenic | 35.0% |
| !! | GTTTCTACATCGTGTTTTTG+AGG | - | chr4.4:52744392-52744411 | MS.gene064336:intron | 35.0% |
| !!! | GCTGTTTTTGAAGTAAGAGA+GGG | - | chr4.4:52742945-52742964 | MS.gene064336:intron | 35.0% |
| !!! | TGCTGTTTTTGAAGTAAGAG+AGG | - | chr4.4:52742944-52742963 | MS.gene064336:intron | 35.0% |
| AAGGCAGATCTGCAAATAAC+TGG | + | chr4.4:52743212-52743231 | None:intergenic | 40.0% | |
| ACCAACCGGAATAAAGAAGA+AGG | + | chr4.4:52743231-52743250 | None:intergenic | 40.0% | |
| ACCCGTTCAAACCATGATTT+AGG | - | chr4.4:52745732-52745751 | MS.gene064336:intron | 40.0% | |
| AGATAGAGCTATTGAAGCAG+AGG | - | chr4.4:52744652-52744671 | MS.gene064336:CDS | 40.0% | |
| ATTTAAGTCACATACACCGC+CGG | + | chr4.4:52743436-52743455 | None:intergenic | 40.0% | |
| CGCGAAACTAGAGATATGTA+TGG | - | chr4.4:52743811-52743830 | MS.gene064336:CDS | 40.0% | |
| CTTTAGCAGCAGGAAAAGAA+GGG | - | chr4.4:52744121-52744140 | MS.gene064336:intron | 40.0% | |
| GTTGCTGAAAAAGATTGAGC+AGG | + | chr4.4:52745187-52745206 | None:intergenic | 40.0% | |
| TCCTATTGACACATCCTCAT+TGG | + | chr4.4:52745610-52745629 | None:intergenic | 40.0% | |
| TCGGAACAGAACCTAAATCA+TGG | + | chr4.4:52745746-52745765 | None:intergenic | 40.0% | |
| TGAGAAAAGGAAAATGGGGT+AGG | + | chr4.4:52744747-52744766 | None:intergenic | 40.0% | |
| TTAACTAGTGCTACATCAGG+AGG | - | chr4.4:52744623-52744642 | MS.gene064336:CDS | 40.0% | |
| TTAATACTGCCTTTAGCAGC+AGG | - | chr4.4:52744111-52744130 | MS.gene064336:intron | 40.0% | |
| TTCTTACCTTGTTGCACAGA+GGG | - | chr4.4:52745351-52745370 | MS.gene064336:intron | 40.0% | |
| TTCTTCTTTATTCCGGTTGG+TGG | - | chr4.4:52743230-52743249 | MS.gene064336:intron | 40.0% | |
| TTGGTTTATTGGACTTGACG+TGG | - | chr4.4:52745632-52745651 | MS.gene064336:intron | 40.0% | |
| ! | AACGGGCCCATTATCTTTTT+AGG | - | chr4.4:52745983-52746002 | MS.gene064336:intron | 40.0% |
| ! | AAGTTTTGCTGGAGAGCTAA+TGG | + | chr4.4:52745862-52745881 | None:intergenic | 40.0% |
| ! | CTGCTTCAATAGCTCTATCT+AGG | + | chr4.4:52744652-52744671 | None:intergenic | 40.0% |
| ! | CTTGCAAGTCCATTTTGTTC+AGG | + | chr4.4:52743601-52743620 | None:intergenic | 40.0% |
| ! | GAAAGCATGGAGATTTCTTG+AGG | - | chr4.4:52744678-52744697 | MS.gene064336:CDS | 40.0% |
| ! | GTTTTCAGATTGCGAATGGA+AGG | - | chr4.4:52746055-52746074 | MS.gene064336:intron | 40.0% |
| !! | AAAAAGATAATGGGCCCGTT+TGG | + | chr4.4:52745983-52746002 | None:intergenic | 40.0% |
| !! | AGAAAGTACCTTATGGTCGT+AGG | - | chr4.4:52744086-52744105 | MS.gene064336:CDS | 40.0% |
| !! | TTACCAGTTTCTGAAGCTGT+CGG | + | chr4.4:52743625-52743644 | None:intergenic | 40.0% |
| !!! | TGGGCACTTTTTCTTTGTCT+CGG | - | chr4.4:52742587-52742606 | MS.gene064336:CDS | 40.0% |
| AATAGCATACAACTGCCCTG+TGG | + | chr4.4:52745441-52745460 | None:intergenic | 45.0% | |
| AATTTGAACTCCGTCCGTTG+AGG | - | chr4.4:52743148-52743167 | MS.gene064336:intron | 45.0% | |
| ACGGAGTTCAAATTCTCTCG+GGG | + | chr4.4:52743142-52743161 | None:intergenic | 45.0% | |
| ACTTCCAATGCTCAGGTTCA+TGG | + | chr4.4:52745385-52745404 | None:intergenic | 45.0% | |
| AGGATGTGTCAATAGGAGCT+TGG | - | chr4.4:52745613-52745632 | MS.gene064336:intron | 45.0% | |
| CCTTTAGCAGCAGGAAAAGA+AGG | - | chr4.4:52744120-52744139 | MS.gene064336:intron | 45.0% | |
| CTCTGTGCAACAAGGTAAGA+AGG | + | chr4.4:52745352-52745371 | None:intergenic | 45.0% | |
| CTGGAATGCTCTTCACTAAC+AGG | - | chr4.4:52742621-52742640 | MS.gene064336:CDS | 45.0% | |
| CTTCTTACCTTGTTGCACAG+AGG | - | chr4.4:52745350-52745369 | MS.gene064336:intron | 45.0% | |
| GAATTTGTAGGTCCGCTGAT+AGG | - | chr4.4:52746126-52746145 | MS.gene064336:CDS | 45.0% | |
| GACGGAGTTCAAATTCTCTC+GGG | + | chr4.4:52743143-52743162 | None:intergenic | 45.0% | |
| GACTTTGTAACCTCAACGGA+CGG | + | chr4.4:52743161-52743180 | None:intergenic | 45.0% | |
| GATACCATGAACCTGAGCAT+TGG | - | chr4.4:52745378-52745397 | MS.gene064336:intron | 45.0% | |
| GCCAATGAGGATGTGTCAAT+AGG | - | chr4.4:52745606-52745625 | MS.gene064336:intron | 45.0% | |
| GCCTTCTTCTTTATTCCGGT+TGG | - | chr4.4:52743227-52743246 | MS.gene064336:intron | 45.0% | |
| GGACGGAGTTCAAATTCTCT+CGG | + | chr4.4:52743144-52743163 | None:intergenic | 45.0% | |
| GTTCAAGAGTCAGTACGAAG+TGG | - | chr4.4:52744017-52744036 | MS.gene064336:intron | 45.0% | |
| TATAAGGACGACTGAGTCGA+CGG | - | chr4.4:52744058-52744077 | MS.gene064336:CDS | 45.0% | |
| TCATTTGATTGGAGCTGCAG+TGG | - | chr4.4:52746104-52746123 | MS.gene064336:CDS | 45.0% | |
| TCTTACCTTGTTGCACAGAG+GGG | - | chr4.4:52745352-52745371 | MS.gene064336:intron | 45.0% | |
| TGCGCTTTGTAATTGGACAC+AGG | - | chr4.4:52744329-52744348 | MS.gene064336:intron | 45.0% | |
| TGTTTGGGGAATCAAGTGGA+TGG | - | chr4.4:52743517-52743536 | MS.gene064336:CDS | 45.0% | |
| ! | CCTTCTTTTCCTGCTGCTAA+AGG | + | chr4.4:52744123-52744142 | None:intergenic | 45.0% |
| ! | GTACATAGAAGGTGTGGAGA+AGG | - | chr4.4:52746158-52746177 | MS.gene064336:CDS | 45.0% |
| !! | GAACCTGAGCATTGGAAGTT+TGG | - | chr4.4:52745386-52745405 | MS.gene064336:intron | 45.0% |
| !! | GGGCAAGAGAAAGTACCTTA+TGG | - | chr4.4:52744079-52744098 | MS.gene064336:CDS | 45.0% |
| !!! | TCTCACTTTTGAGACAGGAC+AGG | + | chr4.4:52745277-52745296 | None:intergenic | 45.0% |
| AGACCGACAGCTTCAGAAAC+TGG | - | chr4.4:52743619-52743638 | MS.gene064336:intron | 50.0% | |
| ATAAGGACGACTGAGTCGAC+GGG | - | chr4.4:52744059-52744078 | MS.gene064336:CDS | 50.0% | |
| ATCCCATAAGCTCACAGCAG+TGG | + | chr4.4:52744914-52744933 | None:intergenic | 50.0% | |
| CAGCAGGAAAAGAAGGGACT+CGG | - | chr4.4:52744127-52744146 | MS.gene064336:intron | 50.0% | |
| CATTGGAAGTTTGGCGAGTC+TGG | - | chr4.4:52745395-52745414 | MS.gene064336:intron | 50.0% | |
| GAAGCAGAGGACAGAAAGCA+TGG | - | chr4.4:52744665-52744684 | MS.gene064336:CDS | 50.0% | |
| GAGTGCCACAGCAAAGTCTT+CGG | + | chr4.4:52745671-52745690 | None:intergenic | 50.0% | |
| GATGACCGAAGACTTTGCTG+TGG | - | chr4.4:52745663-52745682 | MS.gene064336:intron | 50.0% | |
| GCATGGAGATTTCTTGAGGC+TGG | - | chr4.4:52744682-52744701 | MS.gene064336:CDS | 50.0% | |
| GGAGCTGCAGTGGAATTTGT+AGG | - | chr4.4:52746114-52746133 | MS.gene064336:CDS | 50.0% | |
| TCGCCAAACTTCCAATGCTC+AGG | + | chr4.4:52745392-52745411 | None:intergenic | 50.0% | |
| TCTTACCCCTCTGTGCAACA+AGG | + | chr4.4:52745360-52745379 | None:intergenic | 50.0% | |
| TGCCACTGCTGTGAGCTTAT+GGG | - | chr4.4:52744909-52744928 | MS.gene064336:CDS | 50.0% | |
| TGTCTCGGTAGTTTCTGTGC+TGG | - | chr4.4:52742602-52742621 | MS.gene064336:CDS | 50.0% | |
| TTGCCACTGCTGTGAGCTTA+TGG | - | chr4.4:52744908-52744927 | MS.gene064336:CDS | 50.0% | |
| ! | GAAAAGAAGGGACTCGGTTC+GGG | - | chr4.4:52744133-52744152 | MS.gene064336:intron | 50.0% |
| ! | GGAAAAGAAGGGACTCGGTT+CGG | - | chr4.4:52744132-52744151 | MS.gene064336:intron | 50.0% |
| AAGTACTTCCGCCATGCCAC+AGG | - | chr4.4:52745422-52745441 | MS.gene064336:intron | 55.0% | |
| AGTACTTCCGCCATGCCACA+GGG | - | chr4.4:52745423-52745442 | MS.gene064336:intron | 55.0% | |
| CATACAACTGCCCTGTGGCA+TGG | + | chr4.4:52745436-52745455 | None:intergenic | 55.0% | |
| ACAACTGCCCTGTGGCATGG+CGG | + | chr4.4:52745433-52745452 | None:intergenic | 60.0% | |
| CGGGCTACTTGGTTGCCACA+AGG | - | chr4.4:52744152-52744171 | MS.gene064336:intron | 60.0% | |
| ! | AGATGGACTTGGCTGCTGCG+AGG | - | chr4.4:52743991-52744010 | MS.gene064336:intron | 60.0% |
| ! | CTTTGCTGTGGCACTCCTCC+AGG | - | chr4.4:52745675-52745694 | MS.gene064336:intron | 60.0% |
| ! | GATGGACTTGGCTGCTGCGA+GGG | - | chr4.4:52743992-52744011 | MS.gene064336:intron | 60.0% |
| ! | TGCGAATGGAAGGCGCAAGC+AGG | - | chr4.4:52746065-52746084 | MS.gene064336:intron | 60.0% |
| !! | GGGACTCGGTTCGGGCTACT+TGG | - | chr4.4:52744141-52744160 | MS.gene064336:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 52742533 | 52746211 | 52742533 | ID=MS.gene064336 |
| chr4.4 | mRNA | 52742533 | 52746211 | 52742533 | ID=MS.gene064336.t1;Parent=MS.gene064336 |
| chr4.4 | exon | 52746102 | 52746211 | 52746102 | ID=MS.gene064336.t1.exon1;Parent=MS.gene064336.t1 |
| chr4.4 | CDS | 52746102 | 52746211 | 52746102 | ID=cds.MS.gene064336.t1;Parent=MS.gene064336.t1 |
| chr4.4 | exon | 52745063 | 52745159 | 52745063 | ID=MS.gene064336.t1.exon2;Parent=MS.gene064336.t1 |
| chr4.4 | CDS | 52745063 | 52745159 | 52745063 | ID=cds.MS.gene064336.t1;Parent=MS.gene064336.t1 |
| chr4.4 | exon | 52744881 | 52744954 | 52744881 | ID=MS.gene064336.t1.exon3;Parent=MS.gene064336.t1 |
| chr4.4 | CDS | 52744881 | 52744954 | 52744881 | ID=cds.MS.gene064336.t1;Parent=MS.gene064336.t1 |
| chr4.4 | exon | 52744571 | 52744782 | 52744571 | ID=MS.gene064336.t1.exon4;Parent=MS.gene064336.t1 |
| chr4.4 | CDS | 52744571 | 52744782 | 52744571 | ID=cds.MS.gene064336.t1;Parent=MS.gene064336.t1 |
| chr4.4 | exon | 52744394 | 52744457 | 52744394 | ID=MS.gene064336.t1.exon5;Parent=MS.gene064336.t1 |
| chr4.4 | CDS | 52744394 | 52744457 | 52744394 | ID=cds.MS.gene064336.t1;Parent=MS.gene064336.t1 |
| chr4.4 | exon | 52744041 | 52744113 | 52744041 | ID=MS.gene064336.t1.exon6;Parent=MS.gene064336.t1 |
| chr4.4 | CDS | 52744041 | 52744113 | 52744041 | ID=cds.MS.gene064336.t1;Parent=MS.gene064336.t1 |
| chr4.4 | exon | 52743765 | 52743885 | 52743765 | ID=MS.gene064336.t1.exon7;Parent=MS.gene064336.t1 |
| chr4.4 | CDS | 52743765 | 52743885 | 52743765 | ID=cds.MS.gene064336.t1;Parent=MS.gene064336.t1 |
| chr4.4 | exon | 52743454 | 52743541 | 52743454 | ID=MS.gene064336.t1.exon8;Parent=MS.gene064336.t1 |
| chr4.4 | CDS | 52743454 | 52743541 | 52743454 | ID=cds.MS.gene064336.t1;Parent=MS.gene064336.t1 |
| chr4.4 | exon | 52743249 | 52743374 | 52743249 | ID=MS.gene064336.t1.exon9;Parent=MS.gene064336.t1 |
| chr4.4 | CDS | 52743249 | 52743374 | 52743249 | ID=cds.MS.gene064336.t1;Parent=MS.gene064336.t1 |
| chr4.4 | exon | 52743048 | 52743157 | 52743048 | ID=MS.gene064336.t1.exon10;Parent=MS.gene064336.t1 |
| chr4.4 | CDS | 52743048 | 52743157 | 52743048 | ID=cds.MS.gene064336.t1;Parent=MS.gene064336.t1 |
| chr4.4 | exon | 52742533 | 52742681 | 52742533 | ID=MS.gene064336.t1.exon11;Parent=MS.gene064336.t1 |
| chr4.4 | CDS | 52742533 | 52742681 | 52742533 | ID=cds.MS.gene064336.t1;Parent=MS.gene064336.t1 |
| Gene Sequence |
| Protein sequence |
