Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068014.t1 | XP_003608406.2 | 97.2 | 141 | 4 | 0 | 1 | 141 | 1 | 141 | 5.40E-65 | 256.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068014.t1 | G7JV55 | 97.2 | 141 | 4 | 0 | 1 | 141 | 1 | 141 | 3.9e-65 | 256.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene068014 | -0.804676 | 1.93E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene068014 | -0.82337 | 1.44E-53 | -1.69E-46 |
| MS.gene050026 | MS.gene068014 | -0.825525 | 4.47E-54 | -1.69E-46 |
| MS.gene050029 | MS.gene068014 | -0.822563 | 2.22E-53 | -1.69E-46 |
| MS.gene050750 | MS.gene068014 | -0.814937 | 1.19E-51 | -1.69E-46 |
| MS.gene050759 | MS.gene068014 | -0.807557 | 4.77E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene068014 | -0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene051147 | MS.gene068014 | -0.800073 | 1.71E-48 | -1.69E-46 |
| MS.gene051190 | MS.gene068014 | -0.807487 | 4.93E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene068014 | -0.817229 | 3.68E-52 | -1.69E-46 |
| MS.gene051924 | MS.gene068014 | 0.831012 | 2.12E-55 | -1.69E-46 |
| MS.gene051926 | MS.gene068014 | 0.824274 | 8.82E-54 | -1.69E-46 |
| MS.gene052190 | MS.gene068014 | -0.81444 | 1.54E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene068014 | -0.815505 | 8.93E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene068014 | -0.815729 | 7.96E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene068014 | -0.824023 | 1.01E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene068014 | -0.821463 | 3.98E-53 | -1.69E-46 |
| MS.gene052673 | MS.gene068014 | 0.839287 | 1.73E-57 | -1.69E-46 |
| MS.gene053166 | MS.gene068014 | -0.844043 | 9.65E-59 | -1.69E-46 |
| MS.gene053221 | MS.gene068014 | -0.811252 | 7.68E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene068014 | -0.808802 | 2.59E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene068014 | -0.840372 | 9.05E-58 | -1.69E-46 |
| MS.gene054236 | MS.gene068014 | -0.800305 | 1.53E-48 | -1.69E-46 |
| MS.gene05423 | MS.gene068014 | -0.804702 | 1.90E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene068014 | 0.844989 | 5.37E-59 | -1.69E-46 |
| MS.gene054405 | MS.gene068014 | -0.800926 | 1.15E-48 | -1.69E-46 |
| MS.gene054467 | MS.gene068014 | -0.820604 | 6.28E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene068014 | -0.812137 | 4.93E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene068014 | -0.835335 | 1.78E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene068014 | -0.823958 | 1.05E-53 | -1.69E-46 |
| MS.gene054775 | MS.gene068014 | -0.818497 | 1.90E-52 | -1.69E-46 |
| MS.gene054991 | MS.gene068014 | -0.819365 | 1.21E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene068014 | -0.816811 | 4.56E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene068014 | -0.821819 | 3.30E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene068014 | -0.801426 | 9.05E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene068014 | -0.814087 | 1.84E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene068014 | -0.812213 | 4.75E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene068014 | -0.813978 | 1.95E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene068014 | -0.829308 | 5.53E-55 | -1.69E-46 |
| MS.gene057156 | MS.gene068014 | 0.809867 | 1.53E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene068014 | -0.800297 | 1.54E-48 | -1.69E-46 |
| MS.gene057444 | MS.gene068014 | -0.806647 | 7.43E-50 | -1.69E-46 |
| MS.gene057598 | MS.gene068014 | -0.805796 | 1.12E-49 | -1.69E-46 |
| MS.gene058223 | MS.gene068014 | 0.802813 | 4.69E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene068014 | -0.840805 | 6.97E-58 | -1.69E-46 |
| MS.gene058979 | MS.gene068014 | -0.817646 | 2.96E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene068014 | -0.800249 | 1.57E-48 | -1.69E-46 |
| MS.gene060122 | MS.gene068014 | 0.820767 | 5.76E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene068014 | 0.857709 | 1.36E-62 | -1.69E-46 |
| MS.gene060322 | MS.gene068014 | -0.811555 | 6.60E-51 | -1.69E-46 |
| MS.gene060373 | MS.gene068014 | -0.802061 | 6.71E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene068014 | -0.852864 | 3.49E-61 | -1.69E-46 |
| MS.gene060634 | MS.gene068014 | 0.847123 | 1.41E-59 | -1.69E-46 |
| MS.gene060802 | MS.gene068014 | -0.801458 | 8.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068014.t1 | MTR_4g093770 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 2.87e-100 | 283 |
| MS.gene068014.t1 | MTR_4g093770 | 99.083 | 109 | 1 | 0 | 1 | 109 | 1 | 109 | 5.39e-72 | 211 |
| MS.gene068014.t1 | MTR_2g009710 | 54.167 | 120 | 45 | 3 | 25 | 137 | 47 | 163 | 3.90e-30 | 107 |
| MS.gene068014.t1 | MTR_2g009700 | 51.724 | 87 | 34 | 1 | 50 | 128 | 2 | 88 | 2.69e-19 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068014.t1 | AT5G09570 | 56.944 | 144 | 50 | 3 | 1 | 139 | 1 | 137 | 7.08e-52 | 161 |
| MS.gene068014.t1 | AT5G64400 | 72.043 | 93 | 24 | 1 | 47 | 139 | 52 | 142 | 4.31e-38 | 126 |
| MS.gene068014.t1 | AT5G64400 | 71.429 | 70 | 18 | 1 | 40 | 109 | 1 | 68 | 7.11e-22 | 84.7 |
| MS.gene068014.t1 | AT5G64400 | 71.429 | 63 | 16 | 1 | 47 | 109 | 52 | 112 | 2.20e-17 | 74.3 |
Find 40 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATGGCAGGTATGGCTTT+TGG | 0.258248 | 4.3:+20967209 | MS.gene068014:intron |
| GCACCGACTTCAAGCTCTTT+TGG | 0.290138 | 4.3:+20967332 | MS.gene068014:CDS |
| GGCGGTATTCTTAGTGGCAT+TGG | 0.395537 | 4.3:+20967083 | MS.gene068014:CDS |
| CTAGCATATCCATGTAAAAC+TGG | 0.399015 | 4.3:-20968287 | None:intergenic |
| CAGGGCCGTGGATGCTGTTG+TGG | 0.451033 | 4.3:+20967253 | MS.gene068014:CDS |
| ACCATGGCACGCCGTAGCTC+CGG | 0.466038 | 4.3:+20966098 | None:intergenic |
| CCACCACTCTGAGGATTAGC+TGG | 0.472443 | 4.3:-20967059 | None:intergenic |
| AACTACTGCTTCATGTTGAA+TGG | 0.473377 | 4.3:-20967285 | None:intergenic |
| TGCAATGGCACACAGGGCCG+TGG | 0.474780 | 4.3:+20967241 | MS.gene068014:CDS |
| CGTGGTGCAGCACGTGGAGC+TGG | 0.485293 | 4.3:-20966860 | None:intergenic |
| GGTGGCGGCGGTATTCTTAG+TGG | 0.495349 | 4.3:+20967077 | MS.gene068014:CDS |
| GCTGCACCACGTCCTGCTCC+AGG | 0.519152 | 4.3:+20966872 | MS.gene068014:CDS |
| TCCGGAGCTACGGCGTGCCA+TGG | 0.527864 | 4.3:-20966099 | None:intergenic |
| AAAGAGCTTGAAGTCGGTGC+AGG | 0.533911 | 4.3:-20967329 | None:intergenic |
| CTCTGAGGATTAGCTGGAGG+AGG | 0.538286 | 4.3:-20967053 | None:intergenic |
| AGGACCCACAACAGCATCCA+CGG | 0.556091 | 4.3:-20967258 | None:intergenic |
| GCTAATCCTCAGAGTGGTGG+CGG | 0.558257 | 4.3:+20967062 | MS.gene068014:CDS |
| GCAGGACGTGGTGCAGCACG+TGG | 0.561238 | 4.3:-20966866 | None:intergenic |
| TGCATGCAATATTCATTCAA+AGG | 0.562704 | 4.3:+20967361 | MS.gene068014:CDS |
| AGGGCCGTGGATGCTGTTGT+GGG | 0.564421 | 4.3:+20967254 | MS.gene068014:CDS |
| TGGAAGTGCAATGGCACACA+GGG | 0.567260 | 4.3:+20967235 | MS.gene068014:CDS |
| GAACGTTACCTCCGGAGCTA+CGG | 0.573066 | 4.3:-20966109 | None:intergenic |
| CATTAATATATACCTGGAGC+AGG | 0.580772 | 4.3:-20966884 | None:intergenic |
| ACATGAAGCAGTAGTTAATG+AGG | 0.581873 | 4.3:+20967292 | MS.gene068014:CDS |
| AATCCTCAGAGTGGTGGCGG+CGG | 0.582840 | 4.3:+20967065 | MS.gene068014:CDS |
| TATATACCTGGAGCAGGACG+TGG | 0.583895 | 4.3:-20966878 | None:intergenic |
| ATTGGTTCAACCATTGCTCA+AGG | 0.588907 | 4.3:+20967101 | MS.gene068014:CDS |
| CTGGAAGTGCAATGGCACAC+AGG | 0.589957 | 4.3:+20967234 | MS.gene068014:CDS |
| GCTTGACATACCTTGAGCAA+TGG | 0.600932 | 4.3:-20967111 | None:intergenic |
| ATGGCACGCCGTAGCTCCGG+AGG | 0.604368 | 4.3:+20966101 | MS.gene068014:CDS |
| TGCTGATCTCAGTTCCGTAG+TGG | 0.607249 | 4.3:-20968260 | None:intergenic |
| CCAGCTAATCCTCAGAGTGG+TGG | 0.634085 | 4.3:+20967059 | MS.gene068014:CDS |
| CTGCCAAAAGAGCTTGAAGT+CGG | 0.641855 | 4.3:-20967335 | None:intergenic |
| TTGCAGTGCATCAACCACTA+CGG | 0.648457 | 4.3:+20968246 | MS.gene068014:intron |
| GAGCAGTTACATACTCATTG+TGG | 0.664410 | 4.3:-20968334 | None:intergenic |
| CCACTCTGAGGATTAGCTGG+AGG | 0.669248 | 4.3:-20967056 | None:intergenic |
| GATTAGCTGGAGGAGGAGCG+TGG | 0.675718 | 4.3:-20967046 | None:intergenic |
| CCTCCAGCTAATCCTCAGAG+TGG | 0.682091 | 4.3:+20967056 | MS.gene068014:CDS |
| ATACCGCCGCCACCACTCTG+AGG | 0.688047 | 4.3:-20967068 | None:intergenic |
| GCTTCATGTTGAATGGTGCG+AGG | 0.729803 | 4.3:-20967278 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATTGTAACGATAAT+AGG | - | chr4.3:20966172-20966191 | None:intergenic | 15.0% |
| !! | AAATCTTAAATAGTAGTTAT+TGG | + | chr4.3:20967443-20967462 | MS.gene068014:intron | 15.0% |
| !! | AATTATGTTTGTATTCATAT+TGG | + | chr4.3:20967984-20968003 | MS.gene068014:intron | 15.0% |
| !! | ATTCAATCTAAGTATAAATT+AGG | - | chr4.3:20966501-20966520 | None:intergenic | 15.0% |
| !! | TTCAATCTAAGTATAAATTA+GGG | - | chr4.3:20966500-20966519 | None:intergenic | 15.0% |
| !!! | TTATTTTAAATTGCTGTATT+GGG | + | chr4.3:20966441-20966460 | MS.gene068014:intron | 15.0% |
| !!! | TTTATTTTAAATTGCTGTAT+TGG | + | chr4.3:20966440-20966459 | MS.gene068014:intron | 15.0% |
| !!! | TTTTGAAAAATTGTGTATTT+TGG | + | chr4.3:20966267-20966286 | MS.gene068014:intron | 15.0% |
| !! | AAATACAACATAAAACTGAA+AGG | - | chr4.3:20966196-20966215 | None:intergenic | 20.0% |
| !! | AATAAAAGTAAACCATTCAT+CGG | - | chr4.3:20966768-20966787 | None:intergenic | 20.0% |
| !! | AATAAAATAACAGATATCCA+AGG | - | chr4.3:20966426-20966445 | None:intergenic | 20.0% |
| !! | AATACAACATAAAACTGAAA+GGG | - | chr4.3:20966195-20966214 | None:intergenic | 20.0% |
| !! | ATAATTAAGATCATAGTTGT+TGG | - | chr4.3:20967945-20967964 | None:intergenic | 20.0% |
| !! | ATACTACATTAATATATACC+TGG | - | chr4.3:20966893-20966912 | None:intergenic | 20.0% |
| !! | TGGTACTAAATTTCAATTTA+TGG | + | chr4.3:20967193-20967212 | MS.gene068014:intron | 20.0% |
| !! | TTGTCTAAATAAGATATTGT+GGG | + | chr4.3:20966975-20966994 | MS.gene068014:intron | 20.0% |
| !!! | AGTTGAAAACAAATCTTTTA+AGG | - | chr4.3:20967528-20967547 | None:intergenic | 20.0% |
| !!! | TATTTAAGATTTAAACCAAC+AGG | - | chr4.3:20967435-20967454 | None:intergenic | 20.0% |
| !!! | TGAATGAAATTTTCATTTTC+TGG | + | chr4.3:20967168-20967187 | MS.gene068014:intron | 20.0% |
| ! | AAAATTTCTCAATGACAACA+AGG | - | chr4.3:20968181-20968200 | None:intergenic | 25.0% |
| ! | ACACAAAGAAAGAAAACAAT+AGG | - | chr4.3:20966824-20966843 | None:intergenic | 25.0% |
| ! | ACTAAATTTCAATTTATGGC+AGG | + | chr4.3:20967197-20967216 | MS.gene068014:intron | 25.0% |
| ! | CACAAAGAAAGAAAACAATA+GGG | - | chr4.3:20966823-20966842 | None:intergenic | 25.0% |
| ! | GCAAAGCAAAAAATATCTAA+AGG | - | chr4.3:20966400-20966419 | None:intergenic | 25.0% |
| ! | GCTAAAATAACTACGAAAAA+TGG | - | chr4.3:20966326-20966345 | None:intergenic | 25.0% |
| ! | GTTATAGTTTAGTAGGTTAT+TGG | + | chr4.3:20966619-20966638 | MS.gene068014:intron | 25.0% |
| ! | GTTGTCTAAATAAGATATTG+TGG | + | chr4.3:20966974-20966993 | MS.gene068014:intron | 25.0% |
| ! | TAATGTTATGATAATAGCTC+TGG | + | chr4.3:20966595-20966614 | MS.gene068014:intron | 25.0% |
| ! | TACTGTAAAATCTTTCAAAG+TGG | - | chr4.3:20967831-20967850 | None:intergenic | 25.0% |
| ! | TGTCTAAATAAGATATTGTG+GGG | + | chr4.3:20966976-20966995 | MS.gene068014:intron | 25.0% |
| ! | TGTGTATTCAATACTTGATA+TGG | + | chr4.3:20966548-20966567 | MS.gene068014:intron | 25.0% |
| !! | ATTGTTTTCTTTCTTTGTGT+AGG | + | chr4.3:20966824-20966843 | MS.gene068014:intron | 25.0% |
| !! | CAATATCTTATTTAGACAAC+AGG | - | chr4.3:20966974-20966993 | None:intergenic | 25.0% |
| !!! | CAAAGTGAAATTTTGATTGT+TGG | + | chr4.3:20966683-20966702 | MS.gene068014:intron | 25.0% |
| !!! | CTGTTTCTTTTCTTTTTGTA+AGG | + | chr4.3:20967916-20967935 | MS.gene068014:intron | 25.0% |
| !!! | GAAATTTTCATTTTCTGGTT+TGG | + | chr4.3:20967173-20967192 | MS.gene068014:intron | 25.0% |
| !!! | GATTTGTTTTCAACTTTGAA+AGG | + | chr4.3:20967533-20967552 | MS.gene068014:intron | 25.0% |
| !!! | TCTTCTAATGTTTTGAAAAC+CGG | + | chr4.3:20967573-20967592 | MS.gene068014:intron | 25.0% |
| !!! | TTTCGTGTTTTTTTTAGCAA+AGG | - | chr4.3:20966931-20966950 | None:intergenic | 25.0% |
| AAACCTGCAAATACTATAAC+AGG | + | chr4.3:20967733-20967752 | MS.gene068014:intron | 30.0% | |
| ATTTCAATTTATGGCAGGTA+TGG | + | chr4.3:20967202-20967221 | MS.gene068014:intron | 30.0% | |
| GATTCATAACTTCCCAAAAT+CGG | - | chr4.3:20966361-20966380 | None:intergenic | 30.0% | |
| TACTGTAAAGTCTTTCAAAC+TGG | - | chr4.3:20967690-20967709 | None:intergenic | 30.0% | |
| TAGGAAAACAACATACATCT+TGG | - | chr4.3:20967391-20967410 | None:intergenic | 30.0% | |
| TGCATGCAATATTCATTCAA+AGG | + | chr4.3:20967361-20967380 | MS.gene068014:CDS | 30.0% | |
| TTATTGCTTGAAATTCCTGT+TGG | + | chr4.3:20967417-20967436 | MS.gene068014:intron | 30.0% | |
| ! | TAATTCTCTTCTCCGATTTT+GGG | + | chr4.3:20966346-20966365 | MS.gene068014:intron | 30.0% |
| ! | TCATTTAAGATCATTGCTGT+TGG | - | chr4.3:20967800-20967819 | None:intergenic | 30.0% |
| ! | TTCGCATACTATCTTTTCTA+GGG | + | chr4.3:20966215-20966234 | MS.gene068014:intron | 30.0% |
| ! | TTTCGCATACTATCTTTTCT+AGG | + | chr4.3:20966214-20966233 | MS.gene068014:intron | 30.0% |
| !! | ATAACAATAAAAGAAGCACC+AGG | - | chr4.3:20966796-20966815 | None:intergenic | 30.0% |
| !!! | ATTTTTTGCTTTGCATTCCT+TGG | + | chr4.3:20966406-20966425 | MS.gene068014:intron | 30.0% |
| !!! | CTTTTCTAGGGTTTTCTTTT+CGG | + | chr4.3:20966227-20966246 | MS.gene068014:intron | 30.0% |
| !!! | GTGAAATTTTGATTGTTGGT+TGG | + | chr4.3:20966687-20966706 | MS.gene068014:intron | 30.0% |
| !!! | TAAATGTTGCTTTTGCGTAT+TGG | + | chr4.3:20967138-20967157 | MS.gene068014:intron | 30.0% |
| !!! | TGTATGTTGTTTTCCTAGTT+CGG | + | chr4.3:20967394-20967413 | MS.gene068014:intron | 30.0% |
| AACTACTGCTTCATGTTGAA+TGG | - | chr4.3:20967288-20967307 | None:intergenic | 35.0% | |
| ACATGAAGCAGTAGTTAATG+AGG | + | chr4.3:20967292-20967311 | MS.gene068014:CDS | 35.0% | |
| CATTAATATATACCTGGAGC+AGG | - | chr4.3:20966887-20966906 | None:intergenic | 35.0% | |
| CTAGCATATCCATGTAAAAC+TGG | - | chr4.3:20968290-20968309 | None:intergenic | 35.0% | |
| GTTAACAGTCCCAATAACAA+AGG | - | chr4.3:20968056-20968075 | None:intergenic | 35.0% | |
| TTTCAAGCAATAACCGAACT+AGG | - | chr4.3:20967410-20967429 | None:intergenic | 35.0% | |
| ! | CTAATTCTCTTCTCCGATTT+TGG | + | chr4.3:20966345-20966364 | MS.gene068014:intron | 35.0% |
| ! | TATGACCTTGCCTTTGTTAT+TGG | + | chr4.3:20968043-20968062 | MS.gene068014:intron | 35.0% |
| ! | TTTGAGATCATCATAGCTGT+TGG | - | chr4.3:20967656-20967675 | None:intergenic | 35.0% |
| !! | ATGACCTTGCCTTTGTTATT+GGG | + | chr4.3:20968044-20968063 | MS.gene068014:intron | 35.0% |
| !! | CTCTGGAGTTATAGTTTAGT+AGG | + | chr4.3:20966612-20966631 | MS.gene068014:intron | 35.0% |
| !! | GATTTGTTGATGCATGTGTT+TGG | + | chr4.3:20966570-20966589 | MS.gene068014:intron | 35.0% |
| !! | GTTGGTTGGTTTGATCAATA+TGG | + | chr4.3:20966701-20966720 | MS.gene068014:intron | 35.0% |
| !! | GTTTACTTTTATTCTCTGCC+TGG | + | chr4.3:20966775-20966794 | MS.gene068014:intron | 35.0% |
| !! | TGTATTGGGTTGTTTTGTTG+TGG | + | chr4.3:20966455-20966474 | MS.gene068014:intron | 35.0% |
| AAACCAACAGACGCTATAAC+AGG | + | chr4.3:20967874-20967893 | MS.gene068014:intron | 40.0% | |
| AAACCGGCAAACACTATAAC+AGG | + | chr4.3:20967589-20967608 | MS.gene068014:intron | 40.0% | |
| ACAGGCTGCTAACATTGATA+TGG | + | chr4.3:20967751-20967770 | MS.gene068014:intron | 40.0% | |
| ATCTCAAGTGAACCGATGAA+TGG | + | chr4.3:20966753-20966772 | MS.gene068014:intron | 40.0% | |
| CAGCCTGTTATAGTATTTGC+AGG | - | chr4.3:20967739-20967758 | None:intergenic | 40.0% | |
| ! | ATTGGTTCAACCATTGCTCA+AGG | + | chr4.3:20967101-20967120 | MS.gene068014:CDS | 40.0% |
| ! | GCTGTTGGTTGTCTTTCAAA+AGG | - | chr4.3:20967641-20967660 | None:intergenic | 40.0% |
| ! | TCCAGAGTTCTTTTTGCACT+CGG | - | chr4.3:20968313-20968332 | None:intergenic | 40.0% |
| ! | TTATGGCAGGTATGGCTTTT+GGG | + | chr4.3:20967210-20967229 | MS.gene068014:intron | 40.0% |
| ! | TTTATGGCAGGTATGGCTTT+TGG | + | chr4.3:20967209-20967228 | MS.gene068014:intron | 40.0% |
| !! | ATTGGGTTGTTTTGTTGTGG+AGG | + | chr4.3:20966458-20966477 | MS.gene068014:intron | 40.0% |
| !! | TTCATCGGTTCACTTGAGAT+CGG | - | chr4.3:20966753-20966772 | None:intergenic | 40.0% |
| ACAGGCTGCTAACATTGCTA+TGG | + | chr4.3:20967607-20967626 | MS.gene068014:intron | 45.0% | |
| CAGCCTGTTATAGTGTTTGC+CGG | - | chr4.3:20967595-20967614 | None:intergenic | 45.0% | |
| CAGTCCCAATAACAAAGGCA+AGG | - | chr4.3:20968051-20968070 | None:intergenic | 45.0% | |
| CTGCCAAAAGAGCTTGAAGT+CGG | - | chr4.3:20967338-20967357 | None:intergenic | 45.0% | |
| GCTTGACATACCTTGAGCAA+TGG | - | chr4.3:20967114-20967133 | None:intergenic | 45.0% | |
| TGAGATGAGAACGTTACCTC+CGG | - | chr4.3:20966120-20966139 | None:intergenic | 45.0% | |
| TTGCAGTGCATCAACCACTA+CGG | + | chr4.3:20968246-20968265 | MS.gene068014:intron | 45.0% | |
| ! | CAGCAAGTGCCAGTTTTACA+TGG | + | chr4.3:20968278-20968297 | MS.gene068014:CDS | 45.0% |
| ! | GCTGTTGGTTGCATTTCAGA+AGG | - | chr4.3:20967785-20967804 | None:intergenic | 45.0% |
| !!! | TTTTGGGACTGGAAGTGCAA+TGG | + | chr4.3:20967226-20967245 | MS.gene068014:CDS | 45.0% |
| AAAGAGCTTGAAGTCGGTGC+AGG | - | chr4.3:20967332-20967351 | None:intergenic | 50.0% | |
| CAGCCTGTTATAGCGTCTGT+TGG | - | chr4.3:20967880-20967899 | None:intergenic | 50.0% | |
| GCCGAGTGCAAAAAGAACTC+TGG | + | chr4.3:20968309-20968328 | MS.gene068014:CDS | 50.0% | |
| GCTTCATGTTGAATGGTGCG+AGG | - | chr4.3:20967281-20967300 | None:intergenic | 50.0% | |
| GGCGGTATTCTTAGTGGCAT+TGG | + | chr4.3:20967083-20967102 | MS.gene068014:CDS | 50.0% | |
| TATATACCTGGAGCAGGACG+TGG | - | chr4.3:20966881-20966900 | None:intergenic | 50.0% | |
| TGCTGATCTCAGTTCCGTAG+TGG | - | chr4.3:20968263-20968282 | None:intergenic | 50.0% | |
| ! | TGGAAGTGCAATGGCACACA+GGG | + | chr4.3:20967235-20967254 | MS.gene068014:CDS | 50.0% |
| !!! | GCACCGACTTCAAGCTCTTT+TGG | + | chr4.3:20967332-20967351 | MS.gene068014:CDS | 50.0% |
| AGGACCCACAACAGCATCCA+CGG | - | chr4.3:20967261-20967280 | None:intergenic | 55.0% | |
| CCAGCTAATCCTCAGAGTGG+TGG | + | chr4.3:20967059-20967078 | MS.gene068014:CDS | 55.0% | |
| CCTCCAGCTAATCCTCAGAG+TGG | + | chr4.3:20967056-20967075 | MS.gene068014:CDS | 55.0% | |
| GAACGTTACCTCCGGAGCTA+CGG | - | chr4.3:20966112-20966131 | None:intergenic | 55.0% | |
| GCTAATCCTCAGAGTGGTGG+CGG | + | chr4.3:20967062-20967081 | MS.gene068014:CDS | 55.0% | |
| ! | CCACCACTCTGAGGATTAGC+TGG | - | chr4.3:20967062-20967081 | None:intergenic | 55.0% |
| ! | CTGGAAGTGCAATGGCACAC+AGG | + | chr4.3:20967234-20967253 | MS.gene068014:CDS | 55.0% |
| !! | CCACTCTGAGGATTAGCTGG+AGG | - | chr4.3:20967059-20967078 | None:intergenic | 55.0% |
| !! | CTCTGAGGATTAGCTGGAGG+AGG | - | chr4.3:20967056-20967075 | None:intergenic | 55.0% |
| !!! | GCAGGTATGGCTTTTGGGAC+TGG | + | chr4.3:20967215-20967234 | MS.gene068014:intron | 55.0% |
| AGGGCCGTGGATGCTGTTGT+GGG | + | chr4.3:20967254-20967273 | MS.gene068014:CDS | 60.0% | |
| ! | GATTAGCTGGAGGAGGAGCG+TGG | - | chr4.3:20967049-20967068 | None:intergenic | 60.0% |
| ! | GGTGGCGGCGGTATTCTTAG+TGG | + | chr4.3:20967077-20967096 | MS.gene068014:CDS | 60.0% |
| !! | AATCCTCAGAGTGGTGGCGG+CGG | + | chr4.3:20967065-20967084 | MS.gene068014:CDS | 60.0% |
| ATACCGCCGCCACCACTCTG+AGG | - | chr4.3:20967071-20967090 | None:intergenic | 65.0% | |
| CAGGGCCGTGGATGCTGTTG+TGG | + | chr4.3:20967253-20967272 | MS.gene068014:CDS | 65.0% | |
| TGCAATGGCACACAGGGCCG+TGG | + | chr4.3:20967241-20967260 | MS.gene068014:CDS | 65.0% | |
| ATGGCACGCCGTAGCTCCGG+AGG | + | chr4.3:20966101-20966120 | MS.gene068014:CDS | 70.0% | |
| CGTGGTGCAGCACGTGGAGC+TGG | - | chr4.3:20966863-20966882 | None:intergenic | 70.0% | |
| GCAGGACGTGGTGCAGCACG+TGG | - | chr4.3:20966869-20966888 | None:intergenic | 70.0% | |
| GCTGCACCACGTCCTGCTCC+AGG | + | chr4.3:20966872-20966891 | MS.gene068014:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 20966101 | 20968350 | 20966101 | ID=MS.gene068014 |
| chr4.3 | mRNA | 20966101 | 20968350 | 20966101 | ID=MS.gene068014.t1;Parent=MS.gene068014 |
| chr4.3 | exon | 20966101 | 20966122 | 20966101 | ID=MS.gene068014.t1.exon1;Parent=MS.gene068014.t1 |
| chr4.3 | CDS | 20966101 | 20966122 | 20966101 | ID=cds.MS.gene068014.t1;Parent=MS.gene068014.t1 |
| chr4.3 | exon | 20966846 | 20966893 | 20966846 | ID=MS.gene068014.t1.exon2;Parent=MS.gene068014.t1 |
| chr4.3 | CDS | 20966846 | 20966893 | 20966846 | ID=cds.MS.gene068014.t1;Parent=MS.gene068014.t1 |
| chr4.3 | exon | 20967042 | 20967122 | 20967042 | ID=MS.gene068014.t1.exon3;Parent=MS.gene068014.t1 |
| chr4.3 | CDS | 20967042 | 20967122 | 20967042 | ID=cds.MS.gene068014.t1;Parent=MS.gene068014.t1 |
| chr4.3 | exon | 20967219 | 20967394 | 20967219 | ID=MS.gene068014.t1.exon4;Parent=MS.gene068014.t1 |
| chr4.3 | CDS | 20967219 | 20967394 | 20967219 | ID=cds.MS.gene068014.t1;Parent=MS.gene068014.t1 |
| chr4.3 | exon | 20968252 | 20968350 | 20968252 | ID=MS.gene068014.t1.exon5;Parent=MS.gene068014.t1 |
| chr4.3 | CDS | 20968252 | 20968350 | 20968252 | ID=cds.MS.gene068014.t1;Parent=MS.gene068014.t1 |
| Gene Sequence |
| Protein sequence |
