Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070029.t1 | XP_003604990.1 | 100 | 155 | 0 | 0 | 13 | 167 | 65 | 219 | 9.60E-61 | 243 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070029.t1 | O48850 | 71.0 | 155 | 45 | 0 | 13 | 167 | 130 | 284 | 1.3e-53 | 210.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070029.t1 | G7JUL3 | 100.0 | 155 | 0 | 0 | 13 | 167 | 65 | 219 | 6.9e-61 | 243.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene070029 | 0.836607 | 8.47E-57 | -1.69E-46 |
| MS.gene04919 | MS.gene070029 | 0.811253 | 7.68E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene070029 | 0.827521 | 1.49E-54 | -1.69E-46 |
| MS.gene049283 | MS.gene070029 | 0.823924 | 1.07E-53 | -1.69E-46 |
| MS.gene049350 | MS.gene070029 | 0.800311 | 1.53E-48 | -1.69E-46 |
| MS.gene049499 | MS.gene070029 | 0.832196 | 1.08E-55 | -1.69E-46 |
| MS.gene049711 | MS.gene070029 | 0.802952 | 4.39E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene070029 | 0.827617 | 1.42E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene070029 | 0.803745 | 3.01E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene070029 | 0.845654 | 3.55E-59 | -1.69E-46 |
| MS.gene051019 | MS.gene070029 | 0.806721 | 7.17E-50 | -1.69E-46 |
| MS.gene051043 | MS.gene070029 | 0.815992 | 6.96E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene070029 | 0.825084 | 5.69E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene070029 | 0.801199 | 1.01E-48 | -1.69E-46 |
| MS.gene051699 | MS.gene070029 | 0.848013 | 8.03E-60 | -1.69E-46 |
| MS.gene052016 | MS.gene070029 | 0.823953 | 1.05E-53 | -1.69E-46 |
| MS.gene052072 | MS.gene070029 | 0.818825 | 1.60E-52 | -1.69E-46 |
| MS.gene052239 | MS.gene070029 | -0.801564 | 8.48E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene070029 | 0.811469 | 6.89E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene070029 | 0.843836 | 1.10E-58 | -1.69E-46 |
| MS.gene052793 | MS.gene070029 | 0.833098 | 6.48E-56 | -1.69E-46 |
| MS.gene053272 | MS.gene070029 | -0.850927 | 1.24E-60 | -1.69E-46 |
| MS.gene054178 | MS.gene070029 | 0.838431 | 2.89E-57 | -1.69E-46 |
| MS.gene054222 | MS.gene070029 | 0.821195 | 4.59E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene070029 | 0.833788 | 4.36E-56 | -1.69E-46 |
| MS.gene054893 | MS.gene070029 | 0.837043 | 6.56E-57 | -1.69E-46 |
| MS.gene055150 | MS.gene070029 | 0.818005 | 2.46E-52 | -1.69E-46 |
| MS.gene055221 | MS.gene070029 | 0.806754 | 7.05E-50 | -1.69E-46 |
| MS.gene055386 | MS.gene070029 | 0.820567 | 6.41E-53 | -1.69E-46 |
| MS.gene056082 | MS.gene070029 | 0.846212 | 2.50E-59 | -1.69E-46 |
| MS.gene056677 | MS.gene070029 | 0.809385 | 1.94E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene070029 | 0.808947 | 2.41E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene070029 | 0.834653 | 2.65E-56 | -1.69E-46 |
| MS.gene057102 | MS.gene070029 | 0.856639 | 2.81E-62 | -1.69E-46 |
| MS.gene057174 | MS.gene070029 | 0.801194 | 1.01E-48 | -1.69E-46 |
| MS.gene058095 | MS.gene070029 | 0.812067 | 5.11E-51 | -1.69E-46 |
| MS.gene058159 | MS.gene070029 | 0.830555 | 2.75E-55 | -1.69E-46 |
| MS.gene058279 | MS.gene070029 | 0.813566 | 2.40E-51 | -1.69E-46 |
| MS.gene058781 | MS.gene070029 | 0.816456 | 5.48E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene070029 | 0.803244 | 3.82E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene070029 | 0.826901 | 2.10E-54 | -1.69E-46 |
| MS.gene059778 | MS.gene070029 | 0.802921 | 4.46E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene070029 | -0.870735 | 1.17E-66 | -1.69E-46 |
| MS.gene059965 | MS.gene070029 | 0.800679 | 1.29E-48 | -1.69E-46 |
| MS.gene060512 | MS.gene070029 | 0.802982 | 4.33E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene070029 | 0.818348 | 2.05E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene070029 | 0.814869 | 1.24E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene070029 | 0.814335 | 1.62E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene070029 | 0.827422 | 1.58E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene070029 | 0.8482 | 7.13E-60 | -1.69E-46 |
| MS.gene061160 | MS.gene070029 | 0.850175 | 2.01E-60 | -1.69E-46 |
| MS.gene061188 | MS.gene070029 | 0.831595 | 1.53E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070029.t1 | MTR_4g022570 | 99.359 | 156 | 1 | 0 | 12 | 167 | 64 | 219 | 9.64e-113 | 319 |
| MS.gene070029.t1 | MTR_1g047720 | 76.282 | 156 | 37 | 0 | 12 | 167 | 64 | 219 | 1.40e-91 | 266 |
| MS.gene070029.t1 | MTR_7g058900 | 84.615 | 156 | 24 | 0 | 12 | 167 | 64 | 219 | 1.62e-83 | 245 |
| MS.gene070029.t1 | MTR_2g436870 | 71.795 | 156 | 44 | 0 | 12 | 167 | 64 | 219 | 2.79e-82 | 242 |
| MS.gene070029.t1 | MTR_4g083490 | 80.303 | 132 | 26 | 0 | 12 | 143 | 66 | 197 | 2.63e-77 | 229 |
| MS.gene070029.t1 | MTR_1g047710 | 78.125 | 128 | 28 | 0 | 9 | 136 | 9 | 136 | 7.79e-75 | 220 |
| MS.gene070029.t1 | MTR_2g028790 | 75.758 | 132 | 32 | 0 | 12 | 143 | 68 | 199 | 5.60e-74 | 221 |
| MS.gene070029.t1 | MTR_4g022470 | 92.035 | 113 | 9 | 0 | 7 | 119 | 5 | 117 | 1.44e-72 | 214 |
| MS.gene070029.t1 | MTR_7g058640 | 75.758 | 132 | 32 | 0 | 12 | 143 | 64 | 195 | 2.24e-71 | 214 |
| MS.gene070029.t1 | MTR_7g058640 | 77.778 | 117 | 26 | 0 | 27 | 143 | 1 | 117 | 1.28e-64 | 194 |
| MS.gene070029.t1 | MTR_1g111890 | 52.874 | 174 | 63 | 1 | 13 | 167 | 65 | 238 | 3.82e-63 | 194 |
| MS.gene070029.t1 | MTR_7g058640 | 68.254 | 126 | 38 | 1 | 12 | 137 | 64 | 187 | 1.02e-57 | 179 |
| MS.gene070029.t1 | MTR_4g022550 | 96.825 | 63 | 2 | 0 | 105 | 167 | 9 | 71 | 6.21e-39 | 127 |
| MS.gene070029.t1 | MTR_5g089370 | 40.667 | 150 | 85 | 3 | 16 | 164 | 66 | 212 | 1.41e-33 | 118 |
| MS.gene070029.t1 | MTR_4g115390 | 34.228 | 149 | 96 | 2 | 16 | 164 | 70 | 216 | 1.79e-30 | 110 |
| MS.gene070029.t1 | MTR_4g052550 | 33.548 | 155 | 101 | 2 | 12 | 166 | 62 | 214 | 9.75e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070029.t1 | AT1G04760 | 78.846 | 156 | 33 | 0 | 12 | 167 | 64 | 219 | 1.32e-86 | 253 |
| MS.gene070029.t1 | AT1G04760 | 78.846 | 156 | 33 | 0 | 12 | 167 | 64 | 219 | 1.32e-86 | 253 |
| MS.gene070029.t1 | AT1G04750 | 83.974 | 156 | 25 | 0 | 12 | 167 | 64 | 219 | 1.45e-84 | 248 |
| MS.gene070029.t1 | AT2G33120 | 80.864 | 162 | 31 | 0 | 6 | 167 | 66 | 227 | 4.19e-84 | 247 |
| MS.gene070029.t1 | AT2G32670 | 82.692 | 156 | 27 | 0 | 12 | 167 | 129 | 284 | 9.21e-84 | 248 |
| MS.gene070029.t1 | AT2G33120 | 83.333 | 156 | 26 | 0 | 12 | 167 | 64 | 219 | 1.17e-83 | 246 |
| MS.gene070029.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 27 | 167 | 1 | 141 | 5.21e-75 | 221 |
| MS.gene070029.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 27 | 167 | 1 | 141 | 5.21e-75 | 221 |
| MS.gene070029.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 27 | 167 | 1 | 141 | 5.21e-75 | 221 |
| MS.gene070029.t1 | AT3G54300 | 52.273 | 176 | 61 | 2 | 13 | 167 | 65 | 238 | 5.49e-61 | 189 |
| MS.gene070029.t1 | AT3G54300 | 52.273 | 176 | 61 | 2 | 13 | 167 | 65 | 238 | 5.49e-61 | 189 |
| MS.gene070029.t1 | AT3G54300 | 52.273 | 176 | 61 | 2 | 13 | 167 | 65 | 238 | 5.49e-61 | 189 |
| MS.gene070029.t1 | AT2G33110 | 66.026 | 156 | 49 | 1 | 12 | 167 | 64 | 215 | 7.84e-57 | 177 |
| MS.gene070029.t1 | AT4G15780 | 69.565 | 115 | 35 | 0 | 12 | 126 | 65 | 179 | 2.04e-55 | 173 |
| MS.gene070029.t1 | AT2G33110 | 67.677 | 99 | 32 | 0 | 12 | 110 | 64 | 162 | 6.47e-45 | 146 |
| MS.gene070029.t1 | AT5G11150 | 43.791 | 153 | 80 | 5 | 16 | 166 | 67 | 215 | 2.72e-37 | 128 |
| MS.gene070029.t1 | AT5G11150 | 43.709 | 151 | 79 | 5 | 16 | 164 | 67 | 213 | 2.75e-37 | 128 |
| MS.gene070029.t1 | AT2G33120 | 83.696 | 92 | 15 | 0 | 76 | 167 | 46 | 137 | 1.11e-36 | 124 |
| MS.gene070029.t1 | AT5G22360 | 37.419 | 155 | 95 | 2 | 12 | 166 | 63 | 215 | 5.10e-35 | 122 |
| MS.gene070029.t1 | AT4G32150 | 39.597 | 149 | 88 | 2 | 16 | 164 | 66 | 212 | 7.59e-33 | 116 |
| MS.gene070029.t1 | AT2G25340 | 37.333 | 150 | 90 | 3 | 16 | 164 | 66 | 212 | 5.54e-28 | 103 |
| MS.gene070029.t1 | AT3G24890 | 53.191 | 94 | 38 | 2 | 61 | 148 | 14 | 107 | 2.56e-25 | 94.7 |
| MS.gene070029.t1 | AT3G24890 | 54.839 | 62 | 24 | 1 | 61 | 122 | 14 | 71 | 1.63e-15 | 67.8 |
| MS.gene070029.t1 | AT3G24890 | 54.839 | 62 | 24 | 1 | 61 | 122 | 14 | 71 | 1.63e-15 | 67.8 |
| MS.gene070029.t1 | AT3G24890 | 54.839 | 62 | 24 | 1 | 61 | 122 | 14 | 71 | 1.63e-15 | 67.8 |
| MS.gene070029.t1 | AT3G24890 | 54.839 | 62 | 24 | 1 | 61 | 122 | 14 | 71 | 1.63e-15 | 67.8 |
Find 30 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTCTTAACAAAGAATT+TGG | 0.112791 | 4.3:+76043705 | MS.gene070029:CDS |
| GCTCAAGTTTCTGAAGTTAA+AGG | 0.200850 | 4.3:+76043886 | MS.gene070029:CDS |
| GGGAGAGAAGATTGAGGTTT+TGG | 0.250137 | 4.3:+76044165 | MS.gene070029:CDS |
| ACCACATCTTTCTCCTCAAT+TGG | 0.292197 | 4.3:-76044830 | None:intergenic |
| GTTATGTGCAGGTTATTGAT+AGG | 0.320869 | 4.3:+76044143 | MS.gene070029:intron |
| TGCATTTGCTCCTTCAACTT+TGG | 0.326828 | 4.3:-76043814 | None:intergenic |
| ATTTGCAGGCACAAGATTTC+AGG | 0.345983 | 4.3:+76044796 | MS.gene070029:intron |
| ATACGTTCAAGAAAAGCTAT+TGG | 0.353729 | 4.3:-76043627 | None:intergenic |
| GCAAGTTTGCTAACTTCCTC+TGG | 0.381827 | 4.3:-76043853 | None:intergenic |
| TGAAGTTAAAGGAGTTATGA+TGG | 0.406422 | 4.3:+76043897 | MS.gene070029:CDS |
| AACTGAGAACCTTCGCTCTC+AGG | 0.417900 | 4.3:+76044195 | MS.gene070029:CDS |
| CCACATCTTTCTCCTCAATT+GGG | 0.430467 | 4.3:-76044829 | None:intergenic |
| GGCACAAGATTTCAGGCAGC+AGG | 0.435566 | 4.3:+76044803 | MS.gene070029:intron |
| ATTGTTCTTTCTGTGTGTCA+TGG | 0.459510 | 4.3:+76044912 | MS.gene070029:CDS |
| TTATGTGCAGGTTATTGATA+GGG | 0.472672 | 4.3:+76044144 | MS.gene070029:intron |
| AGCTTACTGTGTTGTGGCAG+TGG | 0.485476 | 4.3:+76043584 | MS.gene070029:CDS |
| AAAGTCTTAACAAAGAATTT+GGG | 0.498770 | 4.3:+76043706 | MS.gene070029:CDS |
| TGATAGGGGAGAGAAGATTG+AGG | 0.506422 | 4.3:+76044159 | MS.gene070029:CDS |
| ATGCATTAGACCAAAGTTGA+AGG | 0.514320 | 4.3:+76043804 | MS.gene070029:intron |
| TATGTGCAGGTTATTGATAG+GGG | 0.533979 | 4.3:+76044145 | MS.gene070029:intron |
| TTTAATAAAAGATATGGTGG+AGG | 0.542291 | 4.3:+76043660 | MS.gene070029:CDS |
| GGCAGCAGGGAACCCAATTG+AGG | 0.564168 | 4.3:+76044817 | MS.gene070029:CDS |
| AGAATCTAACCTGAGAGCGA+AGG | 0.618405 | 4.3:-76044204 | None:intergenic |
| GCACAAGATTTCAGGCAGCA+GGG | 0.625497 | 4.3:+76044804 | MS.gene070029:CDS |
| GTTGTGGCAGTGGAGTCTGT+TGG | 0.632770 | 4.3:+76043594 | MS.gene070029:CDS |
| CCCAATTGAGGAGAAAGATG+TGG | 0.650037 | 4.3:+76044829 | MS.gene070029:CDS |
| CATGGAAGACATGAATCCCA+AGG | 0.653108 | 4.3:+76042254 | None:intergenic |
| ATATTGTGTGGAACATCCAG+AGG | 0.668552 | 4.3:+76043837 | MS.gene070029:CDS |
| GGAGCAAATGCAATATTGTG+TGG | 0.673674 | 4.3:+76043825 | MS.gene070029:CDS |
| TATGATGGAAAATATCGACA+AGG | 0.735916 | 4.3:+76043912 | MS.gene070029:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATTATTTTTTTT+TGG | + | chr4.3:76043493-76043512 | MS.gene070029:intron | 0.0% |
| !! | TAAAAATAAAATATGAGTTT+AGG | + | chr4.3:76043268-76043287 | MS.gene070029:intron | 10.0% |
| !! | AAAATCATAAATTTGAAGAT+AGG | - | chr4.3:76043452-76043471 | None:intergenic | 15.0% |
| !! | AAATCATAAATTTGAAGATA+GGG | - | chr4.3:76043451-76043470 | None:intergenic | 15.0% |
| !! | ATAAAATCTTGATACTTTAA+TGG | + | chr4.3:76044646-76044665 | MS.gene070029:intron | 15.0% |
| !! | TAAAATCTTGATACTTTAAT+GGG | + | chr4.3:76044647-76044666 | MS.gene070029:intron | 15.0% |
| !! | TAGATTTAATTAATGCTTAA+TGG | + | chr4.3:76043189-76043208 | MS.gene070029:intron | 15.0% |
| !!! | ATCCAAAACTTTAAAATATT+GGG | - | chr4.3:76044425-76044444 | None:intergenic | 15.0% |
| !!! | GATGATTTTAATAAAAGATA+TGG | + | chr4.3:76043654-76043673 | MS.gene070029:CDS | 15.0% |
| !! | AAAAGTCTTAACAAAGAATT+TGG | + | chr4.3:76043705-76043724 | MS.gene070029:CDS | 20.0% |
| !! | AAAGTCTTAACAAAGAATTT+GGG | + | chr4.3:76043706-76043725 | MS.gene070029:CDS | 20.0% |
| !! | ATCAAAGAAACTTGAAAATT+TGG | + | chr4.3:76042329-76042348 | MS.gene070029:intron | 20.0% |
| !! | CATACAATATTCACAATTAA+TGG | - | chr4.3:76044736-76044755 | None:intergenic | 20.0% |
| !! | TATTATTATAAGTTATGTGC+AGG | + | chr4.3:76044132-76044151 | MS.gene070029:intron | 20.0% |
| !! | TTAATTGTGAATATTGTATG+AGG | + | chr4.3:76044736-76044755 | MS.gene070029:intron | 20.0% |
| !!! | ATCCCAATATTTTAAAGTTT+TGG | + | chr4.3:76044420-76044439 | MS.gene070029:intron | 20.0% |
| !!! | CAATATTTTAAAGTTTTGGA+TGG | + | chr4.3:76044424-76044443 | MS.gene070029:intron | 20.0% |
| !!! | CATCCAAAACTTTAAAATAT+TGG | - | chr4.3:76044426-76044445 | None:intergenic | 20.0% |
| !!! | GATTTTAATAAAAGATATGG+TGG | + | chr4.3:76043657-76043676 | MS.gene070029:CDS | 20.0% |
| !!! | TTTTATGAAACTGGAATTAT+TGG | - | chr4.3:76044632-76044651 | None:intergenic | 20.0% |
| ! | AAGAAACTTGAAAATTTGGA+TGG | + | chr4.3:76042333-76042352 | MS.gene070029:intron | 25.0% |
| ! | ATTTGAATTAGAGATGAGTA+TGG | + | chr4.3:76044246-76044265 | MS.gene070029:intron | 25.0% |
| ! | TAATCATGAAACATGTTCAA+CGG | - | chr4.3:76043552-76043571 | None:intergenic | 25.0% |
| ! | TTACTTGCTTAAATGACTTA+TGG | + | chr4.3:76043401-76043420 | MS.gene070029:intron | 25.0% |
| ! | TTTAATAAAAGATATGGTGG+AGG | + | chr4.3:76043660-76043679 | MS.gene070029:CDS | 25.0% |
| !! | AGCTTCAAATGGAAAAATTT+TGG | - | chr4.3:76042679-76042698 | None:intergenic | 25.0% |
| !! | GTATCAAGATTTTATGAAAC+TGG | - | chr4.3:76044641-76044660 | None:intergenic | 25.0% |
| !!! | CAGTCAAGTTTGTTTTATTA+TGG | - | chr4.3:76042705-76042724 | None:intergenic | 25.0% |
| !!! | TTTTAATTGTGATGATGAAG+TGG | + | chr4.3:76043047-76043066 | MS.gene070029:intron | 25.0% |
| AAACATGTTCAACGGTAAAA+AGG | - | chr4.3:76043544-76043563 | None:intergenic | 30.0% | |
| ACAAAAAAAGGATGGCATAT+AGG | + | chr4.3:76042386-76042405 | MS.gene070029:intron | 30.0% | |
| ATACGTTCAAGAAAAGCTAT+TGG | - | chr4.3:76043630-76043649 | None:intergenic | 30.0% | |
| ATTATAGTGTCCAAATCTCT+TGG | + | chr4.3:76044448-76044467 | MS.gene070029:intron | 30.0% | |
| CATAAATTTGAAGATAGGGA+GGG | - | chr4.3:76043447-76043466 | None:intergenic | 30.0% | |
| CTTCTATTCATTGTTCATGT+AGG | - | chr4.3:76042879-76042898 | None:intergenic | 30.0% | |
| GAGGGTAAGTGTTAAAATTA+TGG | - | chr4.3:76043429-76043448 | None:intergenic | 30.0% | |
| GAGTTTCATTTAATATCACG+TGG | + | chr4.3:76044099-76044118 | MS.gene070029:intron | 30.0% | |
| GATTGGAATGTCAATTGAAA+TGG | + | chr4.3:76044768-76044787 | MS.gene070029:intron | 30.0% | |
| GGATTCGACTAAACAAAAAA+AGG | + | chr4.3:76042374-76042393 | MS.gene070029:intron | 30.0% | |
| GTTTGGTATCTATATGTCAT+TGG | + | chr4.3:76044017-76044036 | MS.gene070029:intron | 30.0% | |
| TCATAAATTTGAAGATAGGG+AGG | - | chr4.3:76043448-76043467 | None:intergenic | 30.0% | |
| TCGACTAAACAAAAAAAGGA+TGG | + | chr4.3:76042378-76042397 | MS.gene070029:intron | 30.0% | |
| TGAACATGTTTCATGATTAG+TGG | + | chr4.3:76043553-76043572 | MS.gene070029:intron | 30.0% | |
| TGAAGTTAAAGGAGTTATGA+TGG | + | chr4.3:76043897-76043916 | MS.gene070029:CDS | 30.0% | |
| TGACACTTCATATTGAAGAA+CGG | + | chr4.3:76043995-76044014 | MS.gene070029:intron | 30.0% | |
| TTATGTGCAGGTTATTGATA+GGG | + | chr4.3:76044144-76044163 | MS.gene070029:intron | 30.0% | |
| TTATGTGTTTGTGTATGTCT+CGG | + | chr4.3:76044049-76044068 | MS.gene070029:intron | 30.0% | |
| TTGAAATGGTATTCATTTGC+AGG | + | chr4.3:76044782-76044801 | MS.gene070029:intron | 30.0% | |
| TTGATGAATACAGTCCTATT+GGG | + | chr4.3:76042543-76042562 | MS.gene070029:intron | 30.0% | |
| TTGGAACTCAAATATCTTCT+CGG | - | chr4.3:76042582-76042601 | None:intergenic | 30.0% | |
| TTTGATGAATACAGTCCTAT+TGG | + | chr4.3:76042542-76042561 | MS.gene070029:intron | 30.0% | |
| ! | AGCTTTTCTTGAACGTATTA+AGG | + | chr4.3:76043632-76043651 | MS.gene070029:CDS | 30.0% |
| ! | AGGAAATTTTCAGTTGATCT+TGG | - | chr4.3:76042859-76042878 | None:intergenic | 30.0% |
| ! | TATGATGGAAAATATCGACA+AGG | + | chr4.3:76043912-76043931 | MS.gene070029:CDS | 30.0% |
| ! | TTGTTATTCCACCTAGTATT+AGG | - | chr4.3:76043153-76043172 | None:intergenic | 30.0% |
| !! | AAGGCTCTTGTTTGATATTT+TGG | - | chr4.3:76042601-76042620 | None:intergenic | 30.0% |
| !! | AAGTGTCAGTGCTATTTATT+TGG | - | chr4.3:76043983-76044002 | None:intergenic | 30.0% |
| !! | ATGGTATTTTGAGCAATGTA+TGG | + | chr4.3:76043109-76043128 | MS.gene070029:intron | 30.0% |
| !! | TGGTATTTTGAGCAATGTAT+GGG | + | chr4.3:76043110-76043129 | MS.gene070029:intron | 30.0% |
| !!! | GATGTTGGTTTTACAAAAAC+AGG | + | chr4.3:76042940-76042959 | MS.gene070029:intron | 30.0% |
| ACTCACACTTGAAACAAACA+AGG | - | chr4.3:76044335-76044354 | None:intergenic | 35.0% | |
| AGAATTGGAACTATGTACCT+TGG | - | chr4.3:76042274-76042293 | None:intergenic | 35.0% | |
| AGGACTGTATTCATCAAAGT+TGG | - | chr4.3:76042540-76042559 | None:intergenic | 35.0% | |
| AGTTGATCTTGGTCGATTAT+GGG | - | chr4.3:76042848-76042867 | None:intergenic | 35.0% | |
| ATGCATTAGACCAAAGTTGA+AGG | + | chr4.3:76043804-76043823 | MS.gene070029:intron | 35.0% | |
| ATGGAAGACAGTGTTATCAA+TGG | + | chr4.3:76042628-76042647 | MS.gene070029:intron | 35.0% | |
| ATTGTTCTTTCTGTGTGTCA+TGG | + | chr4.3:76044912-76044931 | MS.gene070029:CDS | 35.0% | |
| CACCACTAACAGAATTATCA+TGG | + | chr4.3:76042749-76042768 | MS.gene070029:intron | 35.0% | |
| CTCCATGATAATTCTGTTAG+TGG | - | chr4.3:76042754-76042773 | None:intergenic | 35.0% | |
| CTTCATATTGAAGAACGGTT+TGG | + | chr4.3:76044000-76044019 | MS.gene070029:intron | 35.0% | |
| GAAACTGGAATTATTGGACT+TGG | - | chr4.3:76044626-76044645 | None:intergenic | 35.0% | |
| GAATTGGAACTATGTACCTT+GGG | - | chr4.3:76042273-76042292 | None:intergenic | 35.0% | |
| GGACTGTATTCATCAAAGTT+GGG | - | chr4.3:76042539-76042558 | None:intergenic | 35.0% | |
| GTATGAGGATTGTGAATGAT+TGG | + | chr4.3:76044751-76044770 | MS.gene070029:intron | 35.0% | |
| GTTATGTGCAGGTTATTGAT+AGG | + | chr4.3:76044143-76044162 | MS.gene070029:intron | 35.0% | |
| TAATTGTCAGCAGTTGACTA+AGG | + | chr4.3:76043235-76043254 | MS.gene070029:intron | 35.0% | |
| TATGTGCAGGTTATTGATAG+GGG | + | chr4.3:76044145-76044164 | MS.gene070029:intron | 35.0% | |
| TATTATGGCAGAGCTTCAAA+TGG | - | chr4.3:76042690-76042709 | None:intergenic | 35.0% | |
| TCATTCGAAACATGTCTTCA+AGG | - | chr4.3:76042481-76042500 | None:intergenic | 35.0% | |
| TCGAATGAATGAGTTTGAGA+AGG | + | chr4.3:76042493-76042512 | MS.gene070029:intron | 35.0% | |
| TGAGATAGTTACTTGGATGT+TGG | + | chr4.3:76042925-76042944 | MS.gene070029:intron | 35.0% | |
| TGGAAGACAGTGTTATCAAT+GGG | + | chr4.3:76042629-76042648 | MS.gene070029:intron | 35.0% | |
| TGGCATTCTTTGATTGTTGA+AGG | + | chr4.3:76042353-76042372 | MS.gene070029:intron | 35.0% | |
| TTCCAAACTTGCCTAATACT+AGG | + | chr4.3:76043139-76043158 | MS.gene070029:intron | 35.0% | |
| ! | CAACATCTGAGATAGTTACT+TGG | + | chr4.3:76042918-76042937 | MS.gene070029:intron | 35.0% |
| ! | TTGTTTGTTTCAAGTGTGAG+TGG | + | chr4.3:76044334-76044353 | MS.gene070029:intron | 35.0% |
| !! | GCTCAAGTTTCTGAAGTTAA+AGG | + | chr4.3:76043886-76043905 | MS.gene070029:CDS | 35.0% |
| !!! | AAAATTTTGGTTTTCAGCCG+TGG | - | chr4.3:76042666-76042685 | None:intergenic | 35.0% |
| AATCTCACATTAGATCCTCG+TGG | - | chr4.3:76042298-76042317 | None:intergenic | 40.0% | |
| ACCACATCTTTCTCCTCAAT+TGG | - | chr4.3:76044833-76044852 | None:intergenic | 40.0% | |
| ATAGTTCCAATTCTACCACG+AGG | + | chr4.3:76042280-76042299 | MS.gene070029:intron | 40.0% | |
| ATATTGTGTGGAACATCCAG+AGG | + | chr4.3:76043837-76043856 | MS.gene070029:CDS | 40.0% | |
| ATCTTGGTCGATTATGGGTT+AGG | - | chr4.3:76042843-76042862 | None:intergenic | 40.0% | |
| ATTTGCAGGCACAAGATTTC+AGG | + | chr4.3:76044796-76044815 | MS.gene070029:intron | 40.0% | |
| CAAACTTGCCTAATACTAGG+TGG | + | chr4.3:76043142-76043161 | MS.gene070029:intron | 40.0% | |
| CACCTAGTATTAGGCAAGTT+TGG | - | chr4.3:76043144-76043163 | None:intergenic | 40.0% | |
| CAGTTGATCTTGGTCGATTA+TGG | - | chr4.3:76042849-76042868 | None:intergenic | 40.0% | |
| CCACATCTTTCTCCTCAATT+GGG | - | chr4.3:76044832-76044851 | None:intergenic | 40.0% | |
| GAAGACAGTGTTATCAATGG+GGG | + | chr4.3:76042631-76042650 | MS.gene070029:intron | 40.0% | |
| GGAAGACAGTGTTATCAATG+GGG | + | chr4.3:76042630-76042649 | MS.gene070029:intron | 40.0% | |
| GGAGCAAATGCAATATTGTG+TGG | + | chr4.3:76043825-76043844 | MS.gene070029:CDS | 40.0% | |
| TAAGAGCAAGCCAATGATTC+AGG | - | chr4.3:76044478-76044497 | None:intergenic | 40.0% | |
| TGCATTTGCTCCTTCAACTT+TGG | - | chr4.3:76043817-76043836 | None:intergenic | 40.0% | |
| TTAATGCCACCATCCAACAA+TGG | - | chr4.3:76043084-76043103 | None:intergenic | 40.0% | |
| TTAGATCCTCGTGGTAGAAT+TGG | - | chr4.3:76042289-76042308 | None:intergenic | 40.0% | |
| TTGATGCCTTAGAGATCACT+GGG | + | chr4.3:76044521-76044540 | MS.gene070029:intron | 40.0% | |
| ! | TTTTGCAGCTTACTGTGTTG+TGG | + | chr4.3:76043578-76043597 | MS.gene070029:CDS | 40.0% |
| !! | AGAGAAGATTGAGGTTTTGG+TGG | + | chr4.3:76044168-76044187 | MS.gene070029:CDS | 40.0% |
| AACAAGAGCCTTCGAATGCA+TGG | + | chr4.3:76042609-76042628 | MS.gene070029:intron | 45.0% | |
| ACAGTGTTATCAATGGGGGA+TGG | + | chr4.3:76042635-76042654 | MS.gene070029:intron | 45.0% | |
| ACTGTCTTCCATGCATTCGA+AGG | - | chr4.3:76042620-76042639 | None:intergenic | 45.0% | |
| AGAATCTAACCTGAGAGCGA+AGG | - | chr4.3:76044207-76044226 | None:intergenic | 45.0% | |
| CAGAGAATGAAACGCTCACA+AGG | - | chr4.3:76042780-76042799 | None:intergenic | 45.0% | |
| CCCAATTGAGGAGAAAGATG+TGG | + | chr4.3:76044829-76044848 | MS.gene070029:CDS | 45.0% | |
| GTTGATGCCTTAGAGATCAC+TGG | + | chr4.3:76044520-76044539 | MS.gene070029:intron | 45.0% | |
| TCGAATCCCAGTGATCTCTA+AGG | - | chr4.3:76044530-76044549 | None:intergenic | 45.0% | |
| TCTTGGTCGTCCTGAATCAT+TGG | + | chr4.3:76044465-76044484 | MS.gene070029:intron | 45.0% | |
| TGATAGGGGAGAGAAGATTG+AGG | + | chr4.3:76044159-76044178 | MS.gene070029:CDS | 45.0% | |
| TTCAGGACGACCAAGAGATT+TGG | - | chr4.3:76044461-76044480 | None:intergenic | 45.0% | |
| ! | GATGGTGGCATTAATCGTGA+TGG | + | chr4.3:76043090-76043109 | MS.gene070029:intron | 45.0% |
| ! | GGGAGAGAAGATTGAGGTTT+TGG | + | chr4.3:76044165-76044184 | MS.gene070029:CDS | 45.0% |
| ! | TCCTATTGGGTGACTAGCTA+AGG | + | chr4.3:76042556-76042575 | MS.gene070029:intron | 45.0% |
| !! | GCAAGTTTGCTAACTTCCTC+TGG | - | chr4.3:76043856-76043875 | None:intergenic | 45.0% |
| AACTGAGAACCTTCGCTCTC+AGG | + | chr4.3:76044195-76044214 | MS.gene070029:CDS | 50.0% | |
| AGCTTACTGTGTTGTGGCAG+TGG | + | chr4.3:76043584-76043603 | MS.gene070029:CDS | 50.0% | |
| CATCCAACAATGGAAGCGGA+CGG | - | chr4.3:76043074-76043093 | None:intergenic | 50.0% | |
| CCACCATCCAACAATGGAAG+CGG | - | chr4.3:76043078-76043097 | None:intergenic | 50.0% | |
| GCACAAGATTTCAGGCAGCA+GGG | + | chr4.3:76044804-76044823 | MS.gene070029:CDS | 50.0% | |
| GCCTTAGCTAGTCACCCAAT+AGG | - | chr4.3:76042560-76042579 | None:intergenic | 50.0% | |
| CCGCTTCCATTGTTGGATGG+TGG | + | chr4.3:76043075-76043094 | MS.gene070029:intron | 55.0% | |
| CGTCCGCTTCCATTGTTGGA+TGG | + | chr4.3:76043072-76043091 | MS.gene070029:intron | 55.0% | |
| GGCACAAGATTTCAGGCAGC+AGG | + | chr4.3:76044803-76044822 | MS.gene070029:intron | 55.0% | |
| GTTGTGGCAGTGGAGTCTGT+TGG | + | chr4.3:76043594-76043613 | MS.gene070029:CDS | 55.0% | |
| GGACCGTCCGCTTCCATTGT+TGG | + | chr4.3:76043068-76043087 | MS.gene070029:intron | 60.0% | |
| GGCAGCAGGGAACCCAATTG+AGG | + | chr4.3:76044817-76044836 | MS.gene070029:CDS | 60.0% | |
| AATGGGGGATGGCTGCGCCA+CGG | + | chr4.3:76042646-76042665 | MS.gene070029:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 76042255 | 76044947 | 76042255 | ID=MS.gene070029 |
| chr4.3 | mRNA | 76042255 | 76044947 | 76042255 | ID=MS.gene070029.t1;Parent=MS.gene070029 |
| chr4.3 | exon | 76042255 | 76042275 | 76042255 | ID=MS.gene070029.t1.exon1;Parent=MS.gene070029.t1 |
| chr4.3 | CDS | 76042255 | 76042275 | 76042255 | ID=cds.MS.gene070029.t1;Parent=MS.gene070029.t1 |
| chr4.3 | exon | 76043573 | 76043727 | 76043573 | ID=MS.gene070029.t1.exon2;Parent=MS.gene070029.t1 |
| chr4.3 | CDS | 76043573 | 76043727 | 76043573 | ID=cds.MS.gene070029.t1;Parent=MS.gene070029.t1 |
| chr4.3 | exon | 76043813 | 76043933 | 76043813 | ID=MS.gene070029.t1.exon3;Parent=MS.gene070029.t1 |
| chr4.3 | CDS | 76043813 | 76043933 | 76043813 | ID=cds.MS.gene070029.t1;Parent=MS.gene070029.t1 |
| chr4.3 | exon | 76044154 | 76044216 | 76044154 | ID=MS.gene070029.t1.exon4;Parent=MS.gene070029.t1 |
| chr4.3 | CDS | 76044154 | 76044216 | 76044154 | ID=cds.MS.gene070029.t1;Parent=MS.gene070029.t1 |
| chr4.3 | exon | 76044804 | 76044947 | 76044804 | ID=MS.gene070029.t1.exon5;Parent=MS.gene070029.t1 |
| chr4.3 | CDS | 76044804 | 76044947 | 76044804 | ID=cds.MS.gene070029.t1;Parent=MS.gene070029.t1 |
| Gene Sequence |
| Protein sequence |
