Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07164.t1 | XP_013469226.1 | 97 | 602 | 12 | 2 | 1 | 602 | 1 | 596 | 0.00E+00 | 1158.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07164.t1 | O82261 | 70.8 | 617 | 155 | 7 | 1 | 602 | 1 | 607 | 1.6e-244 | 846.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07164.t1 | A0A072VML9 | 97.0 | 602 | 12 | 2 | 1 | 602 | 1 | 596 | 0.0e+00 | 1158.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene07164 | 0.850018 | 2.23E-60 | -1.69E-46 |
| MS.gene049389 | MS.gene07164 | 0.805325 | 1.41E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene07164 | 0.838465 | 2.83E-57 | -1.69E-46 |
| MS.gene049491 | MS.gene07164 | 0.843329 | 1.50E-58 | -1.69E-46 |
| MS.gene049614 | MS.gene07164 | 0.804625 | 1.97E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene07164 | 0.813343 | 2.69E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene07164 | 0.809979 | 1.45E-50 | -1.69E-46 |
| MS.gene050099 | MS.gene07164 | 0.836453 | 9.27E-57 | -1.69E-46 |
| MS.gene050128 | MS.gene07164 | 0.800586 | 1.34E-48 | -1.69E-46 |
| MS.gene050301 | MS.gene07164 | 0.898483 | 5.08E-77 | -1.69E-46 |
| MS.gene050432 | MS.gene07164 | 0.807511 | 4.88E-50 | -1.69E-46 |
| MS.gene050767 | MS.gene07164 | 0.819825 | 9.47E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene07164 | 0.820423 | 6.91E-53 | -1.69E-46 |
| MS.gene050783 | MS.gene07164 | 0.806728 | 7.14E-50 | -1.69E-46 |
| MS.gene050812 | MS.gene07164 | 0.815677 | 8.18E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene07164 | 0.860905 | 1.49E-63 | -1.69E-46 |
| MS.gene051471 | MS.gene07164 | 0.860589 | 1.86E-63 | -1.69E-46 |
| MS.gene051662 | MS.gene07164 | 0.803583 | 3.25E-49 | -1.69E-46 |
| MS.gene051663 | MS.gene07164 | 0.832954 | 7.04E-56 | -1.69E-46 |
| MS.gene052078 | MS.gene07164 | 0.833158 | 6.26E-56 | -1.69E-46 |
| MS.gene052178 | MS.gene07164 | 0.841657 | 4.16E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene07164 | 0.816108 | 6.55E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene07164 | 0.836185 | 1.09E-56 | -1.69E-46 |
| MS.gene052326 | MS.gene07164 | 0.871217 | 8.09E-67 | -1.69E-46 |
| MS.gene052340 | MS.gene07164 | 0.809283 | 2.04E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene07164 | 0.810504 | 1.12E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene07164 | 0.823252 | 1.53E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene07164 | 0.844174 | 8.90E-59 | -1.69E-46 |
| MS.gene054123 | MS.gene07164 | 0.861467 | 1.01E-63 | -1.69E-46 |
| MS.gene054376 | MS.gene07164 | 0.830392 | 3.01E-55 | -1.69E-46 |
| MS.gene05455 | MS.gene07164 | 0.882736 | 8.11E-71 | -1.69E-46 |
| MS.gene054802 | MS.gene07164 | 0.845241 | 4.59E-59 | -1.69E-46 |
| MS.gene054803 | MS.gene07164 | 0.846023 | 2.82E-59 | -1.69E-46 |
| MS.gene054804 | MS.gene07164 | 0.843788 | 1.13E-58 | -1.69E-46 |
| MS.gene055277 | MS.gene07164 | 0.858732 | 6.73E-63 | -1.69E-46 |
| MS.gene055390 | MS.gene07164 | 0.902679 | 7.58E-79 | -1.69E-46 |
| MS.gene055412 | MS.gene07164 | 0.812041 | 5.18E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene07164 | 0.871568 | 6.19E-67 | -1.69E-46 |
| MS.gene055428 | MS.gene07164 | 0.850325 | 1.83E-60 | -1.69E-46 |
| MS.gene055896 | MS.gene07164 | 0.810699 | 1.01E-50 | -1.69E-46 |
| MS.gene055930 | MS.gene07164 | 0.850254 | 1.91E-60 | -1.69E-46 |
| MS.gene056407 | MS.gene07164 | 0.808211 | 3.46E-50 | -1.69E-46 |
| MS.gene056410 | MS.gene07164 | 0.805431 | 1.34E-49 | -1.69E-46 |
| MS.gene056452 | MS.gene07164 | 0.808622 | 2.83E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene07164 | 0.83551 | 1.61E-56 | -1.69E-46 |
| MS.gene056931 | MS.gene07164 | 0.808895 | 2.47E-50 | -1.69E-46 |
| MS.gene056933 | MS.gene07164 | 0.805768 | 1.14E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene07164 | 0.853455 | 2.36E-61 | -1.69E-46 |
| MS.gene05702 | MS.gene07164 | 0.803186 | 3.93E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene07164 | 0.83241 | 9.61E-56 | -1.69E-46 |
| MS.gene057146 | MS.gene07164 | 0.817439 | 3.30E-52 | -1.69E-46 |
| MS.gene057245 | MS.gene07164 | 0.801885 | 7.29E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene07164 | 0.804269 | 2.34E-49 | -1.69E-46 |
| MS.gene057449 | MS.gene07164 | 0.822912 | 1.84E-53 | -1.69E-46 |
| MS.gene057450 | MS.gene07164 | 0.816638 | 4.99E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene07164 | 0.84063 | 7.75E-58 | -1.69E-46 |
| MS.gene05811 | MS.gene07164 | 0.85325 | 2.71E-61 | -1.69E-46 |
| MS.gene058293 | MS.gene07164 | 0.839297 | 1.72E-57 | -1.69E-46 |
| MS.gene05842 | MS.gene07164 | 0.805605 | 1.23E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene07164 | 0.878667 | 2.33E-69 | -1.69E-46 |
| MS.gene058993 | MS.gene07164 | 0.801612 | 8.29E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene07164 | 0.863511 | 2.36E-64 | -1.69E-46 |
| MS.gene059326 | MS.gene07164 | 0.811225 | 7.79E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene07164 | 0.826278 | 2.96E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene07164 | 0.80399 | 2.68E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene07164 | 0.863993 | 1.67E-64 | -1.69E-46 |
| MS.gene05959 | MS.gene07164 | 0.823905 | 1.08E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene07164 | 0.848391 | 6.32E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene07164 | 0.800038 | 1.74E-48 | -1.69E-46 |
| MS.gene059708 | MS.gene07164 | 0.825387 | 4.82E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene07164 | 0.808893 | 2.48E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene07164 | 0.840198 | 1.00E-57 | -1.69E-46 |
| MS.gene059960 | MS.gene07164 | 0.838118 | 3.48E-57 | -1.69E-46 |
| MS.gene060005 | MS.gene07164 | 0.82001 | 8.60E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene07164 | 0.811709 | 6.11E-51 | -1.69E-46 |
| MS.gene060559 | MS.gene07164 | 0.820544 | 6.48E-53 | -1.69E-46 |
| MS.gene06090 | MS.gene07164 | 0.826085 | 3.29E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene07164 | 0.821781 | 3.36E-53 | -1.69E-46 |
| MS.gene061051 | MS.gene07164 | -0.811606 | 6.44E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene07164 | 0.829699 | 4.45E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07164 | MS.gene033222 | PPI |
| MS.gene60345 | MS.gene07164 | PPI |
| MS.gene07164 | MS.gene56943 | PPI |
| MS.gene07164 | MS.gene43291 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07164.t1 | MTR_1g088980 | 97.010 | 602 | 12 | 2 | 1 | 602 | 1 | 596 | 0.0 | 1197 |
| MS.gene07164.t1 | MTR_4g106730 | 52.381 | 462 | 215 | 2 | 108 | 564 | 127 | 588 | 4.59e-176 | 512 |
| MS.gene07164.t1 | MTR_6g004110 | 47.186 | 462 | 237 | 4 | 108 | 565 | 80 | 538 | 2.18e-139 | 416 |
| MS.gene07164.t1 | MTR_6g004110 | 47.575 | 433 | 220 | 4 | 137 | 565 | 2 | 431 | 3.83e-129 | 386 |
| MS.gene07164.t1 | MTR_6g007030 | 30.142 | 282 | 173 | 11 | 147 | 418 | 161 | 428 | 7.70e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07164.t1 | AT2G47940 | 70.806 | 620 | 150 | 8 | 1 | 602 | 1 | 607 | 0.0 | 872 |
| MS.gene07164.t1 | AT2G47940 | 71.082 | 619 | 149 | 9 | 1 | 602 | 1 | 606 | 0.0 | 870 |
| MS.gene07164.t1 | AT5G40200 | 52.381 | 462 | 215 | 2 | 108 | 564 | 125 | 586 | 7.78e-171 | 498 |
| MS.gene07164.t1 | AT5G36950 | 41.971 | 548 | 290 | 9 | 28 | 565 | 42 | 571 | 4.28e-131 | 396 |
| MS.gene07164.t1 | AT1G65640 | 40.546 | 476 | 265 | 6 | 91 | 563 | 53 | 513 | 4.51e-116 | 355 |
| MS.gene07164.t1 | AT1G65630 | 40.000 | 505 | 286 | 8 | 80 | 580 | 63 | 554 | 2.66e-113 | 350 |
| MS.gene07164.t1 | AT5G40560 | 40.130 | 461 | 251 | 5 | 106 | 565 | 37 | 473 | 5.54e-103 | 320 |
| MS.gene07164.t1 | AT1G65640 | 42.386 | 394 | 214 | 5 | 91 | 481 | 53 | 436 | 5.58e-100 | 311 |
| MS.gene07164.t1 | AT3G16540 | 34.894 | 470 | 266 | 6 | 104 | 569 | 102 | 535 | 2.70e-85 | 277 |
| MS.gene07164.t1 | AT3G16550 | 34.462 | 502 | 284 | 10 | 74 | 563 | 31 | 499 | 7.88e-84 | 271 |
| MS.gene07164.t1 | AT1G51150 | 41.935 | 155 | 87 | 2 | 109 | 262 | 57 | 209 | 8.13e-36 | 134 |
| MS.gene07164.t1 | AT5G54745 | 36.416 | 173 | 82 | 5 | 109 | 278 | 44 | 191 | 2.42e-25 | 104 |
| MS.gene07164.t1 | AT3G27925 | 27.645 | 293 | 189 | 10 | 136 | 418 | 156 | 435 | 1.03e-14 | 77.0 |
| MS.gene07164.t1 | AT3G27925 | 27.645 | 293 | 189 | 10 | 136 | 418 | 156 | 435 | 1.03e-14 | 77.0 |
| MS.gene07164.t1 | AT5G39830 | 27.612 | 268 | 155 | 12 | 166 | 415 | 197 | 443 | 3.04e-12 | 69.3 |
Find 134 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCATTGGGGTGGCATTTC+AGG | 0.121430 | 1.4:-70891074 | MS.gene07164:intron |
| ATTTACCTGTCCTTTGAAAT+TGG | 0.159675 | 1.4:+70895930 | None:intergenic |
| TCGTGATCAGCTAAAGTTAT+TGG | 0.214540 | 1.4:-70888052 | MS.gene07164:intron |
| TATTCATTTGCAAGGTTTAA+AGG | 0.216596 | 1.4:-70888018 | MS.gene07164:CDS |
| CAGTAGAAAGCAAGGAGTTT+TGG | 0.227451 | 1.4:-70892400 | MS.gene07164:CDS |
| TGATGCAAATAATGTATTAA+AGG | 0.283856 | 1.4:-70889185 | MS.gene07164:CDS |
| CAACCACCAGACCAGGAATT+TGG | 0.295454 | 1.4:-70887348 | MS.gene07164:CDS |
| GATGTGGAACCTCTTAAATT+TGG | 0.297774 | 1.4:-70892374 | MS.gene07164:CDS |
| TGGACGTTTGCCAGTTCTTC+AGG | 0.302967 | 1.4:-70892354 | MS.gene07164:intron |
| AGATTGCTATGCTGCTGTTT+TGG | 0.312140 | 1.4:-70887487 | MS.gene07164:CDS |
| CTCCTAGGTTTCCCTTGTCT+TGG | 0.319367 | 1.4:-70889729 | MS.gene07164:intron |
| AGGAGCGTGAAGATTGTATA+GGG | 0.323367 | 1.4:-70888158 | MS.gene07164:CDS |
| TTTACCTGTCCTTTGAAATT+GGG | 0.327411 | 1.4:+70895931 | None:intergenic |
| TCTGAAGATGCTGAGAATAT+TGG | 0.329846 | 1.4:-70890270 | MS.gene07164:CDS |
| ATTCATTTGCAAGGTTTAAA+GGG | 0.357832 | 1.4:-70888017 | MS.gene07164:CDS |
| TTTAAACCCACGAGTTCATT+TGG | 0.374117 | 1.4:-70888466 | MS.gene07164:intron |
| ACTTCTTGTGAATCCACATA+TGG | 0.378731 | 1.4:+70887381 | None:intergenic |
| TCATCTTTGCTGAGAGACTA+TGG | 0.383595 | 1.4:-70887438 | MS.gene07164:CDS |
| AAATGAGATACAACTGTTGA+TGG | 0.387290 | 1.4:+70890237 | None:intergenic |
| TTGTCTTGTGCAGGGTGTAT+TGG | 0.389531 | 1.4:-70889230 | MS.gene07164:intron |
| ACGATCAAGGAGAGTGCATT+GGG | 0.390362 | 1.4:-70891087 | MS.gene07164:CDS |
| CCGGGCTATCACCAAATTCC+TGG | 0.391764 | 1.4:+70887337 | None:intergenic |
| TTTCTCCTCTTCAGCATGCC+AGG | 0.392614 | 1.4:-70887535 | MS.gene07164:intron |
| TGCCAGGGAAGTGAATAATC+TGG | 0.393666 | 1.4:+70894117 | None:intergenic |
| GAAAAGAATGGCAAGTATAC+TGG | 0.395730 | 1.4:-70890201 | MS.gene07164:intron |
| CTTTGCAGTGCGTTTATGAT+TGG | 0.400708 | 1.4:-70893992 | MS.gene07164:intron |
| ACAATGTTATACAGATTTGC+AGG | 0.403240 | 1.4:-70888546 | MS.gene07164:intron |
| TTGGCCACGACGGATTGCTC+TGG | 0.403272 | 1.4:-70887299 | MS.gene07164:CDS |
| CCAACTTCAAAATTTGAAAC+CGG | 0.408738 | 1.4:+70887318 | None:intergenic |
| CTTGAAGACTTAAAAGAAGC+TGG | 0.416711 | 1.4:+70895655 | None:intergenic |
| TTCAAACATGCTCGCAGTGC+AGG | 0.417589 | 1.4:+70889681 | None:intergenic |
| AAGGATTCTGTAACGGTTGT+GGG | 0.434654 | 1.4:-70891530 | MS.gene07164:CDS |
| TCAAAAGAGGAAAGGTCTAC+TGG | 0.436520 | 1.4:-70895691 | MS.gene07164:CDS |
| GAAGGATTCTGTAACGGTTG+TGG | 0.436682 | 1.4:-70891531 | MS.gene07164:intron |
| GTTCCCTTTCATATTGATGA+AGG | 0.442609 | 1.4:-70888352 | MS.gene07164:CDS |
| GAGGAGCGTGAAGATTGTAT+AGG | 0.444272 | 1.4:-70888159 | MS.gene07164:CDS |
| CTATCACCAAATTCCTGGTC+TGG | 0.445177 | 1.4:+70887342 | None:intergenic |
| GGCAAACGTCCAAATTTAAG+AGG | 0.453895 | 1.4:+70892365 | None:intergenic |
| TGCAGTGCGTTTATGATTGG+AGG | 0.459995 | 1.4:-70893989 | MS.gene07164:intron |
| CAAAACACAGATATTTGTCC+TGG | 0.460084 | 1.4:+70887517 | None:intergenic |
| CTAACTGACTACGAAAAGAA+TGG | 0.465774 | 1.4:-70890213 | MS.gene07164:CDS |
| CAGAGACAATTCACAAGCAC+TGG | 0.471481 | 1.4:-70894090 | MS.gene07164:CDS |
| ACATTATTTGCATCAGAAGT+TGG | 0.472154 | 1.4:+70889193 | None:intergenic |
| ATAAAGTACCTGCTGATCCT+TGG | 0.472858 | 1.4:+70895606 | None:intergenic |
| TCAATCAATGGTTCTGAAAG+AGG | 0.483299 | 1.4:+70888289 | None:intergenic |
| GTGGATTCACAAGAAGTAGA+AGG | 0.488586 | 1.4:-70887375 | MS.gene07164:CDS |
| GCAGGCGATACTGCAGAACT+TGG | 0.490654 | 1.4:-70888528 | MS.gene07164:CDS |
| AATTCTGACCCCAATTTCAA+AGG | 0.495015 | 1.4:-70895940 | MS.gene07164:CDS |
| TAAATCACAACCAACGGCTC+TGG | 0.496717 | 1.4:+70892433 | None:intergenic |
| CATGGATCGTCTGAGTTGTT+AGG | 0.502207 | 1.4:-70891353 | MS.gene07164:CDS |
| ACGGTTGTGGGATATCCTCT+TGG | 0.503638 | 1.4:-70891518 | MS.gene07164:CDS |
| CTGACCTTCATCAATATGAA+AGG | 0.505131 | 1.4:+70888348 | None:intergenic |
| TTACCTGTCCTTTGAAATTG+GGG | 0.507312 | 1.4:+70895932 | None:intergenic |
| CAAATTCCTGGTCTGGTGGT+TGG | 0.509803 | 1.4:+70887349 | None:intergenic |
| TGACCCCAATTTCAAAGGAC+AGG | 0.510011 | 1.4:-70895935 | MS.gene07164:intron |
| AATGCAACATACTCAATCAA+TGG | 0.517559 | 1.4:+70888277 | None:intergenic |
| CCAGGAATTTGGTGATAGCC+CGG | 0.517798 | 1.4:-70887337 | MS.gene07164:CDS |
| CCTTCCTACTTAATTATCGC+CGG | 0.518490 | 1.4:-70888325 | MS.gene07164:CDS |
| CTCCAGATTATTCACTTCCC+TGG | 0.520748 | 1.4:-70894119 | MS.gene07164:CDS |
| ATTCTCTCATTTGAGCGGAA+TGG | 0.521849 | 1.4:+70889020 | None:intergenic |
| GGTCCAGCGTTCAACGATCA+AGG | 0.523810 | 1.4:-70891100 | MS.gene07164:CDS |
| CAGGTTACATCATATGCTCA+TGG | 0.532853 | 1.4:-70891371 | MS.gene07164:CDS |
| TTTGCTTTCAGTAGAAAGCA+AGG | 0.533581 | 1.4:-70892408 | MS.gene07164:CDS |
| AGGTGACCAACCACCAGACC+AGG | 0.533734 | 1.4:-70887355 | MS.gene07164:CDS |
| TGGCCACGACGGATTGCTCT+GGG | 0.534074 | 1.4:-70887298 | MS.gene07164:CDS |
| AGAAGATAACACAGAGAACA+TGG | 0.534825 | 1.4:+70896056 | None:intergenic |
| TGAAGATATGAGCAATCAGC+AGG | 0.534944 | 1.4:-70887773 | MS.gene07164:intron |
| AACGATCAAGGAGAGTGCAT+TGG | 0.536494 | 1.4:-70891088 | MS.gene07164:CDS |
| AGGTTAAAGTCAAGAGAAGA+GGG | 0.538556 | 1.4:-70893497 | MS.gene07164:CDS |
| ACAGATTGTAATTCTCTCAC+AGG | 0.543311 | 1.4:-70887992 | MS.gene07164:intron |
| GCTGCAATGAATAGAAATGA+AGG | 0.544707 | 1.4:+70895978 | None:intergenic |
| TCACCAAATTCCTGGTCTGG+TGG | 0.545587 | 1.4:+70887345 | None:intergenic |
| TTGCAGATTATAAAATTCAA+CGG | 0.548933 | 1.4:-70887676 | MS.gene07164:intron |
| CAATGAGATGAGCAAGATGA+TGG | 0.549452 | 1.4:+70887635 | None:intergenic |
| GACACAATTTCAGTGACAAA+GGG | 0.549526 | 1.4:-70891491 | MS.gene07164:CDS |
| TTGGGGTCAGAATTAGAAGA+AGG | 0.554085 | 1.4:+70895949 | None:intergenic |
| ATTGACGCAGCAATAAATCC+TGG | 0.554445 | 1.4:-70891323 | MS.gene07164:intron |
| GTTGATGTTTCAGAATTCGT+TGG | 0.555603 | 1.4:-70895722 | MS.gene07164:intron |
| AGATCAGAAGATCTTTCAGA+TGG | 0.557002 | 1.4:+70887411 | None:intergenic |
| TCACATACCAAATGAACTCG+TGG | 0.559012 | 1.4:+70888459 | None:intergenic |
| CAACTTCAAAATTTGAAACC+GGG | 0.559204 | 1.4:+70887319 | None:intergenic |
| AGGCACGTTATTCATTTGCA+AGG | 0.560334 | 1.4:-70888026 | MS.gene07164:CDS |
| TTCATTTGCAAGGTTTAAAG+GGG | 0.564937 | 1.4:-70888016 | MS.gene07164:CDS |
| GTTGTGGGATATCCTCTTGG+AGG | 0.566876 | 1.4:-70891515 | MS.gene07164:CDS |
| TGACCTTCATCAATATGAAA+GGG | 0.569231 | 1.4:+70888349 | None:intergenic |
| GGTAGACTCCAAGGATCAGC+AGG | 0.572458 | 1.4:-70895614 | MS.gene07164:intron |
| GGACTTTGTGGTAGACTCCA+AGG | 0.572501 | 1.4:-70895623 | MS.gene07164:CDS |
| GTTGGAGCTCTCATCAAAAG+AGG | 0.572525 | 1.4:-70895704 | MS.gene07164:CDS |
| TAACATGAAGGATTCTGTAA+CGG | 0.574213 | 1.4:-70891537 | MS.gene07164:intron |
| TGACTCGAAATACGTGGCTA+AGG | 0.576089 | 1.4:-70893472 | MS.gene07164:intron |
| CAGGTTAAAGTCAAGAGAAG+AGG | 0.577823 | 1.4:-70893498 | MS.gene07164:CDS |
| AGCTTTGATGATATACGTGT+TGG | 0.579456 | 1.4:-70889059 | MS.gene07164:CDS |
| TTTGAAACTACAGTCTAATG+AGG | 0.579854 | 1.4:-70889664 | MS.gene07164:intron |
| TTGACTAATGAGGTAGTGGA+AGG | 0.582383 | 1.4:+70888995 | None:intergenic |
| TCACCTTCACAACAGCATTG+AGG | 0.583189 | 1.4:+70894652 | None:intergenic |
| TTTCCTCAATGCTGTTGTGA+AGG | 0.584051 | 1.4:-70894655 | MS.gene07164:intron |
| GAAATGAAGGGTCTCTGTGT+AGG | 0.590316 | 1.4:+70895991 | None:intergenic |
| AGACACAATTTCAGTGACAA+AGG | 0.591490 | 1.4:-70891492 | MS.gene07164:CDS |
| CACATACCAAATGAACTCGT+GGG | 0.593146 | 1.4:+70888460 | None:intergenic |
| TAAGCCGGCGATAATTAAGT+AGG | 0.594318 | 1.4:+70888321 | None:intergenic |
| ATTAACCAACGCACATTGTG+TGG | 0.595162 | 1.4:-70893957 | MS.gene07164:CDS |
| TGCAAATAATGTATTAAAGG+AGG | 0.597855 | 1.4:-70889182 | MS.gene07164:intron |
| AAGGTCTACTGGAGGGAATG+TGG | 0.599448 | 1.4:-70895680 | MS.gene07164:CDS |
| AGCTCTCATCAAAAGAGGAA+AGG | 0.599990 | 1.4:-70895699 | MS.gene07164:CDS |
| AAGAGGAAAGGTCTACTGGA+GGG | 0.601207 | 1.4:-70895687 | MS.gene07164:CDS |
| GGGAGTTGTATCTCGTGTAG+AGG | 0.602074 | 1.4:-70891471 | MS.gene07164:intron |
| TGTATAAGTACTCCAAGACA+AGG | 0.607018 | 1.4:+70889717 | None:intergenic |
| GCAGAACTTGGTATCGTCAG+AGG | 0.610230 | 1.4:-70888516 | MS.gene07164:CDS |
| TTGGCAAATGAACTCAACAT+AGG | 0.610340 | 1.4:-70887799 | MS.gene07164:CDS |
| GACAATTCACAAGCACTGGA+AGG | 0.615528 | 1.4:-70894086 | MS.gene07164:intron |
| AAGAGGTGTGAACACTAAGC+CGG | 0.615681 | 1.4:+70888306 | None:intergenic |
| TCTCCTTGATCGTTGAACGC+TGG | 0.617669 | 1.4:+70891097 | None:intergenic |
| TCAGCTAAAGTTATTGGCAA+AGG | 0.620725 | 1.4:-70888046 | MS.gene07164:intron |
| CAAAGCTAAATCACAACCAA+CGG | 0.623701 | 1.4:+70892427 | None:intergenic |
| ATGCTCCACACAATGTGCGT+TGG | 0.628709 | 1.4:+70893952 | None:intergenic |
| GATATACGTGTTGGATGTGA+AGG | 0.631547 | 1.4:-70889050 | MS.gene07164:CDS |
| AGGCAATTCTCTCATTTGAG+CGG | 0.634537 | 1.4:+70889015 | None:intergenic |
| CCGGCGATAATTAAGTAGGA+AGG | 0.640604 | 1.4:+70888325 | None:intergenic |
| GAAATTGTGTCTCCTCCAAG+AGG | 0.643687 | 1.4:+70891503 | None:intergenic |
| CTGCAATGAATAGAAATGAA+GGG | 0.646164 | 1.4:+70895979 | None:intergenic |
| GGAGCGTGAAGATTGTATAG+GGG | 0.646515 | 1.4:-70888157 | MS.gene07164:intron |
| ACGTGTTGGATGTGAAGGAA+CGG | 0.646805 | 1.4:-70889045 | MS.gene07164:CDS |
| AAAGAGGAAAGGTCTACTGG+AGG | 0.649604 | 1.4:-70895688 | MS.gene07164:CDS |
| TCAAGGAGAGTGCATTGGGG+TGG | 0.650646 | 1.4:-70891083 | MS.gene07164:CDS |
| CAGAATTAGAAGAAGGAGTG+CGG | 0.665220 | 1.4:+70895956 | None:intergenic |
| GTATAAGTACTCCAAGACAA+GGG | 0.666945 | 1.4:+70889718 | None:intergenic |
| TTGTGTGGAGCATGATACAC+AGG | 0.667470 | 1.4:-70893942 | MS.gene07164:intron |
| GAACTTGGTATCGTCAGAGG+CGG | 0.672790 | 1.4:-70888513 | MS.gene07164:CDS |
| GAGTGTGTCTACGTGAGTAG+CGG | 0.691186 | 1.4:+70896019 | None:intergenic |
| ATGCCCAGAGCAATCCGTCG+TGG | 0.693119 | 1.4:+70887295 | None:intergenic |
| CGATCAAGGAGAGTGCATTG+GGG | 0.714890 | 1.4:-70891086 | MS.gene07164:CDS |
| AGGGGATGACTCGAAATACG+TGG | 0.717580 | 1.4:-70893478 | MS.gene07164:CDS |
| GGTTAAAGTCAAGAGAAGAG+GGG | 0.719322 | 1.4:-70893496 | MS.gene07164:CDS |
| TGAGTAGCGGAATTTGACAG+TGG | 0.725425 | 1.4:+70896032 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 70887293 | 70896106 | 70887293 | ID=MS.gene07164 |
| chr1.4 | mRNA | 70887293 | 70896106 | 70887293 | ID=MS.gene07164.t1;Parent=MS.gene07164 |
| chr1.4 | exon | 70895936 | 70896106 | 70895936 | ID=MS.gene07164.t1.exon1;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70895936 | 70896106 | 70895936 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70895615 | 70895731 | 70895615 | ID=MS.gene07164.t1.exon2;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70895615 | 70895731 | 70895615 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70894656 | 70894706 | 70894656 | ID=MS.gene07164.t1.exon3;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70894656 | 70894706 | 70894656 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70894087 | 70894160 | 70894087 | ID=MS.gene07164.t1.exon4;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70894087 | 70894160 | 70894087 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70893943 | 70894006 | 70893943 | ID=MS.gene07164.t1.exon5;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70893943 | 70894006 | 70893943 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70893473 | 70893517 | 70893473 | ID=MS.gene07164.t1.exon6;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70893473 | 70893517 | 70893473 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70892355 | 70892462 | 70892355 | ID=MS.gene07164.t1.exon7;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70892355 | 70892462 | 70892355 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70891472 | 70891549 | 70891472 | ID=MS.gene07164.t1.exon8;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70891472 | 70891549 | 70891472 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70891324 | 70891390 | 70891324 | ID=MS.gene07164.t1.exon9;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70891324 | 70891390 | 70891324 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70891075 | 70891133 | 70891075 | ID=MS.gene07164.t1.exon10;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70891075 | 70891133 | 70891075 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70890202 | 70890301 | 70890202 | ID=MS.gene07164.t1.exon11;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70890202 | 70890301 | 70890202 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70889665 | 70889744 | 70889665 | ID=MS.gene07164.t1.exon12;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70889665 | 70889744 | 70889665 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70889183 | 70889239 | 70889183 | ID=MS.gene07164.t1.exon13;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70889183 | 70889239 | 70889183 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70888993 | 70889096 | 70888993 | ID=MS.gene07164.t1.exon14;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70888993 | 70889096 | 70888993 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70888467 | 70888554 | 70888467 | ID=MS.gene07164.t1.exon15;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70888467 | 70888554 | 70888467 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70888289 | 70888374 | 70888289 | ID=MS.gene07164.t1.exon16;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70888289 | 70888374 | 70888289 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70888158 | 70888182 | 70888158 | ID=MS.gene07164.t1.exon17;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70888158 | 70888182 | 70888158 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70887993 | 70888064 | 70887993 | ID=MS.gene07164.t1.exon18;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70887993 | 70888064 | 70887993 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70887774 | 70887824 | 70887774 | ID=MS.gene07164.t1.exon19;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70887774 | 70887824 | 70887774 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70887632 | 70887692 | 70887632 | ID=MS.gene07164.t1.exon20;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70887632 | 70887692 | 70887632 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| chr1.4 | exon | 70887293 | 70887543 | 70887293 | ID=MS.gene07164.t1.exon21;Parent=MS.gene07164.t1 |
| chr1.4 | CDS | 70887293 | 70887543 | 70887293 | ID=cds.MS.gene07164.t1;Parent=MS.gene07164.t1 |
| Gene Sequence |
| Protein sequence |
