AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29897

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29897.t1 MTR_7g114470 93.939 462 27 1 1 461 1 462 0.0 911
MS.gene29897.t1 MTR_5g076700 86.928 459 60 0 3 461 2 460 0.0 852
MS.gene29897.t1 MTR_7g114560 77.996 459 100 1 3 461 2 459 0.0 765
MS.gene29897.t1 MTR_7g114550 76.790 461 105 2 1 461 1 459 0.0 756
MS.gene29897.t1 MTR_7g114520 75.541 462 112 1 1 461 1 462 0.0 740
MS.gene29897.t1 MTR_7g114490 76.443 433 101 1 3 435 2 433 0.0 712
MS.gene29897.t1 MTR_1g040195 57.734 459 163 6 7 461 5 436 0.0 531
MS.gene29897.t1 MTR_1g040215 54.113 462 200 8 7 461 5 461 2.58e-178 507
MS.gene29897.t1 MTR_7g114420 81.017 295 29 1 167 461 1 268 4.30e-178 499
MS.gene29897.t1 MTR_1g040175 54.466 459 200 6 7 461 5 458 1.42e-177 505
MS.gene29897.t1 MTR_1g081660 56.858 452 180 7 3 447 9 452 7.55e-176 500
MS.gene29897.t1 MTR_7g114510 70.701 314 92 0 148 461 7 320 3.78e-166 471
MS.gene29897.t1 MTR_1g040320 52.203 454 173 7 7 456 5 418 1.09e-162 466
MS.gene29897.t1 MTR_1g040315 51.310 458 175 7 7 461 5 417 8.93e-154 443
MS.gene29897.t1 MTR_0042s0190 51.916 287 132 5 167 450 1 284 2.95e-97 295
MS.gene29897.t1 MTR_0502s0010 55.328 244 101 4 102 342 1 239 4.42e-85 261
MS.gene29897.t1 MTR_7g114500 79.470 151 31 0 3 153 2 152 2.92e-83 253
MS.gene29897.t1 MTR_8g096530 35.476 389 237 8 9 392 5 384 2.49e-80 256
MS.gene29897.t1 MTR_3g098980 33.178 428 270 8 11 435 14 428 5.84e-79 252
MS.gene29897.t1 MTR_7g027175 34.794 388 239 8 14 396 19 397 8.33e-76 244
MS.gene29897.t1 MTR_0042s0190 52.727 220 100 4 234 450 1 219 8.08e-74 232
MS.gene29897.t1 MTR_3g051790 72.483 149 41 0 1 149 3 151 2.92e-73 229
MS.gene29897.t1 MTR_0042s0230 64.336 143 51 0 7 149 5 147 1.42e-64 205
MS.gene29897.t1 MTR_1g053315 30.805 435 284 11 19 439 26 457 1.48e-59 202
MS.gene29897.t1 MTR_8g039950 63.780 127 46 0 4 130 2 128 3.49e-57 185
MS.gene29897.t1 MTR_3g112180 31.888 392 241 11 21 400 22 399 1.89e-56 194
MS.gene29897.t1 MTR_2g105330 29.241 448 289 14 7 442 1 432 9.58e-55 189
MS.gene29897.t1 MTR_2g064495 29.018 448 290 14 7 442 1 432 1.56e-53 185
MS.gene29897.t1 MTR_4g055170 30.493 446 274 16 18 439 19 452 4.28e-52 182
MS.gene29897.t1 MTR_4g007540 29.117 419 259 14 43 442 34 433 2.37e-50 177
MS.gene29897.t1 MTR_8g075610 27.970 404 266 11 46 439 28 416 1.24e-45 164
MS.gene29897.t1 MTR_3g071320 29.750 400 261 10 10 396 4 396 1.48e-45 164
MS.gene29897.t1 MTR_2g015430 31.778 343 221 7 56 391 48 384 8.24e-44 160
MS.gene29897.t1 MTR_7g110610 28.186 408 213 11 7 400 1 342 1.22e-41 152
MS.gene29897.t1 MTR_3g035000 40.496 242 108 8 201 434 43 256 7.83e-41 148
MS.gene29897.t1 MTR_7g085930 27.952 415 253 13 18 394 13 419 1.03e-38 146
MS.gene29897.t1 MTR_7g085990 28.434 415 253 15 17 394 8 415 1.36e-38 146
MS.gene29897.t1 MTR_7g084940 27.020 396 273 10 4 392 8 394 2.37e-38 145
MS.gene29897.t1 MTR_4g127650 27.938 451 279 14 19 439 18 452 3.67e-38 144
MS.gene29897.t1 MTR_7g084910 27.918 437 275 15 5 429 9 417 9.10e-38 143
MS.gene29897.t1 MTR_3g026950 25.747 435 258 12 19 415 10 417 4.09e-37 141
MS.gene29897.t1 MTR_3g465930 27.342 395 260 12 18 391 17 405 5.04e-37 141
MS.gene29897.t1 MTR_4g097090 27.294 436 267 14 37 439 34 452 2.88e-36 139
MS.gene29897.t1 MTR_7g086000 25.000 468 289 18 19 443 12 460 2.47e-34 134
MS.gene29897.t1 MTR_3g465990 27.342 395 256 12 18 391 17 401 3.96e-34 133
MS.gene29897.t1 MTR_3g465980 27.848 395 254 12 18 391 17 401 3.43e-33 130
MS.gene29897.t1 MTR_6g053810 27.723 404 249 15 65 439 70 459 8.25e-33 130
MS.gene29897.t1 MTR_3g049150 25.310 403 265 11 19 394 10 403 1.05e-32 129
MS.gene29897.t1 MTR_3g465910 26.683 401 270 12 9 391 8 402 1.69e-32 130
MS.gene29897.t1 MTR_3g465880 27.983 461 277 18 18 439 17 461 1.97e-30 123
MS.gene29897.t1 MTR_5g090810 26.128 421 261 14 9 393 8 414 2.65e-30 122
MS.gene29897.t1 MTR_5g090830 26.128 421 261 14 9 393 8 414 2.57e-29 120
MS.gene29897.t1 MTR_3g051820 66.304 92 29 2 371 461 1 91 5.07e-29 109
MS.gene29897.t1 MTR_7g056087 25.000 444 288 14 18 437 11 433 1.38e-28 117
MS.gene29897.t1 MTR_3g465950 29.730 296 183 9 61 341 63 348 1.08e-27 115
MS.gene29897.t1 MTR_5g090880 26.764 411 250 16 63 438 64 458 1.12e-25 109
MS.gene29897.t1 MTR_3g070170 24.299 428 256 12 54 435 54 459 6.31e-25 107
MS.gene29897.t1 MTR_3g101960 26.097 433 269 16 25 432 30 436 2.76e-24 105
MS.gene29897.t1 MTR_3g102020 26.526 426 275 17 26 432 31 437 5.68e-24 104
MS.gene29897.t1 MTR_5g026320 25.058 431 273 15 24 430 33 437 6.71e-24 104
MS.gene29897.t1 MTR_3g101900 25.990 404 247 16 66 442 66 444 8.62e-23 100
MS.gene29897.t1 MTR_7g114417 70.149 67 16 2 79 144 20 83 1.54e-22 91.7
MS.gene29897.t1 MTR_7g114417 83.721 43 6 1 1 43 1 42 2.20e-14 68.6
MS.gene29897.t1 MTR_3g450710 23.641 423 252 14 44 428 43 432 2.68e-22 99.8
MS.gene29897.t1 MTR_4g013050 33.735 166 96 5 19 180 12 167 8.16e-22 97.4
MS.gene29897.t1 MTR_3g086020 23.982 442 273 19 17 439 11 408 1.37e-21 97.1
MS.gene29897.t1 MTR_3g450690 23.441 401 239 13 63 428 69 436 4.67e-21 95.9
MS.gene29897.t1 MTR_8g041770 24.561 399 264 13 25 405 31 410 7.18e-21 95.1
MS.gene29897.t1 MTR_3g465870 28.070 285 181 12 18 286 19 295 7.30e-21 95.1
MS.gene29897.t1 MTR_3g101930 25.806 403 242 18 38 405 44 424 8.97e-21 94.7
MS.gene29897.t1 MTR_3g102010 24.885 434 271 16 26 432 32 437 9.60e-21 94.7
MS.gene29897.t1 MTR_3g088420 24.362 431 259 19 25 428 25 415 1.25e-20 94.4
MS.gene29897.t1 MTR_5g084870 24.201 438 258 21 17 422 9 404 3.50e-20 93.2
MS.gene29897.t1 MTR_3g101970 24.194 434 289 12 25 446 30 435 3.75e-20 92.8
MS.gene29897.t1 MTR_4g022825 24.711 433 262 19 25 428 25 422 2.67e-19 90.5
MS.gene29897.t1 MTR_4g094842 24.256 437 262 17 25 427 28 429 2.97e-18 87.4
MS.gene29897.t1 MTR_4g088765 45.333 75 41 0 4 78 2 76 7.98e-18 79.7
MS.gene29897.t1 MTR_4g022720 23.218 435 271 16 25 433 25 422 1.57e-17 85.1
MS.gene29897.t1 MTR_1g094790 24.221 417 255 16 17 399 9 398 4.70e-17 83.6
MS.gene29897.t1 MTR_8g079710 23.721 430 270 19 25 428 30 427 8.08e-17 82.8
MS.gene29897.t1 MTR_4g094838 22.794 408 253 14 25 405 29 401 1.35e-16 82.0
MS.gene29897.t1 MTR_8g467580 23.961 409 261 19 17 399 9 393 1.43e-15 79.0
MS.gene29897.t1 MTR_4g094835 22.222 432 276 18 25 430 33 430 4.19e-15 77.4
MS.gene29897.t1 MTR_4g022290 23.192 401 254 15 25 401 31 401 1.66e-14 75.9
MS.gene29897.t1 MTR_0190s0020 22.406 424 284 15 25 430 30 426 2.10e-14 75.5
MS.gene29897.t1 MTR_3g028210 22.222 432 273 15 46 435 46 456 1.96e-13 72.4
MS.gene29897.t1 MTR_4g094832 24.576 354 224 15 96 430 85 414 9.74e-13 70.1
MS.gene29897.t1 MTR_6g016815 29.452 146 92 6 61 198 64 206 6.49e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29897.t1 AT5G17540 48.817 465 226 8 4 461 2 461 1.48e-149 434
MS.gene29897.t1 AT3G03480 47.427 447 225 7 2 444 10 450 2.47e-138 405
MS.gene29897.t1 AT3G48720 32.832 399 256 8 1 396 1 390 5.23e-76 244
MS.gene29897.t1 AT5G41040 34.937 395 237 8 11 396 33 416 3.68e-75 243
MS.gene29897.t1 AT5G41040 34.937 395 237 8 11 396 17 400 4.81e-75 242
MS.gene29897.t1 AT5G63560 35.787 394 229 9 11 396 9 386 5.06e-75 241
MS.gene29897.t1 AT1G27620 30.070 429 274 10 14 435 12 421 7.43e-59 200
MS.gene29897.t1 AT1G03390 30.201 447 288 14 9 441 23 459 4.16e-56 193
MS.gene29897.t1 AT5G48930 28.440 436 283 13 18 439 10 430 1.81e-48 172
MS.gene29897.t1 AT2G19070 29.630 459 278 14 10 439 5 447 1.34e-46 167
MS.gene29897.t1 AT3G62160 29.950 404 247 11 7 398 1 380 1.46e-46 167
MS.gene29897.t1 AT2G40230 29.500 400 256 12 11 396 5 392 9.56e-45 162
MS.gene29897.t1 AT5G57840 27.609 460 284 16 11 444 3 439 1.49e-42 156
MS.gene29897.t1 AT1G28680 30.189 371 238 12 32 391 27 387 6.74e-42 155
MS.gene29897.t1 AT5G07080 29.854 412 254 13 1 391 6 403 1.38e-41 154
MS.gene29897.t1 AT1G65450 27.851 456 299 15 4 443 8 449 2.95e-41 153
MS.gene29897.t1 AT3G47170 27.521 476 285 17 9 443 10 466 6.91e-39 147
MS.gene29897.t1 AT1G28680 29.891 368 230 13 32 381 27 384 3.28e-38 143
MS.gene29897.t1 AT2G25150 28.330 473 276 17 6 442 7 452 3.12e-35 136
MS.gene29897.t1 AT2G23510 28.916 415 246 17 3 391 7 398 1.89e-34 134
MS.gene29897.t1 AT1G31490 24.020 408 264 14 8 393 3 386 2.07e-26 111
MS.gene29897.t1 AT5G42830 27.727 440 261 18 21 433 27 436 1.04e-25 109
MS.gene29897.t1 AT4G31910 26.483 472 295 21 6 441 2 457 1.56e-25 108
MS.gene29897.t1 AT4G15390 25.450 444 277 20 17 435 14 428 1.73e-25 108
MS.gene29897.t1 AT4G15390 25.450 444 277 20 17 435 14 428 1.73e-25 108
MS.gene29897.t1 AT5G07860 25.823 395 242 15 63 433 69 436 3.20e-23 102
MS.gene29897.t1 AT3G50280 25.862 406 255 16 25 409 28 408 1.24e-22 100
MS.gene29897.t1 AT3G50270 25.121 414 267 13 25 417 30 421 1.97e-22 99.8
MS.gene29897.t1 AT3G26040 23.457 405 253 15 17 394 9 383 4.95e-22 98.6
MS.gene29897.t1 AT1G78990 24.798 371 243 11 44 394 45 399 1.94e-21 97.1
MS.gene29897.t1 AT1G24430 25.400 437 275 18 17 435 11 414 2.30e-21 96.7
MS.gene29897.t1 AT5G38130 25.679 405 257 15 25 410 48 427 3.21e-21 96.3
MS.gene29897.t1 AT5G07850 24.053 449 269 19 21 433 28 440 1.20e-20 94.7
MS.gene29897.t1 AT1G24420 25.390 449 264 18 17 435 11 418 1.37e-20 94.4
MS.gene29897.t1 AT1G24420 25.390 449 264 18 17 435 11 418 1.37e-20 94.4
MS.gene29897.t1 AT1G32910 23.333 390 248 12 64 431 63 423 5.94e-20 92.4
MS.gene29897.t1 AT1G65450 26.351 296 196 10 159 443 1 285 8.77e-20 89.7
MS.gene29897.t1 AT3G30280 24.434 442 277 19 17 432 12 422 1.02e-19 91.7
MS.gene29897.t1 AT5G47980 25.446 448 278 18 15 436 9 426 5.82e-19 89.4
MS.gene29897.t1 AT2G39980 23.628 419 254 12 66 432 62 466 7.54e-19 89.4
MS.gene29897.t1 AT5G47950 24.138 435 270 19 17 432 12 405 3.25e-18 87.0
MS.gene29897.t1 AT5G23970 25.901 444 262 19 17 435 9 410 7.36e-18 85.9
MS.gene29897.t1 AT5G16410 23.699 346 233 12 66 394 91 422 8.98e-18 85.9
MS.gene29897.t1 AT3G50300 23.784 370 244 12 63 410 56 409 1.10e-15 79.3
MS.gene29897.t1 AT4G15400 26.126 444 272 20 17 438 11 420 6.98e-15 77.0
MS.gene29897.t1 AT5G23940 24.088 411 266 16 53 437 53 443 9.14e-15 76.6
MS.gene29897.t1 AT3G50280 24.113 282 189 10 140 409 10 278 7.61e-13 69.7

Find 129 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTATCACTGCATGTTAT+TGG 0.178748 7.3:+2639892 MS.gene29897:CDS
CACTCCTTGTAGGATGATTT+TGG 0.205974 7.3:-2640436 None:intergenic
TCTTCCTTGATGTACGTATT+TGG 0.224399 7.3:-2639765 None:intergenic
GATATAACACTTGATCAATT+TGG 0.295091 7.3:+2637619 MS.gene29897:CDS
TTGTTGCTTGTCGGATATTA+TGG 0.296854 7.3:+2640008 MS.gene29897:CDS
GCATGTTTAAGAACCTTAAC+AGG 0.298889 7.3:-2637478 None:intergenic
ACAAACCTCTTCATATCTTC+AGG 0.311975 7.3:-2640386 None:intergenic
AACTCAACTGCATAACCTAA+TGG 0.312827 7.3:-2640086 None:intergenic
GGGTCTTTCTCTTTCATTGA+TGG 0.316385 7.3:-2637457 None:intergenic
CCATTCAACCTGTATGGAAT+AGG 0.323735 7.3:+2639673 MS.gene29897:CDS
GAACATCGTATAGAATTTCT+TGG 0.334851 7.3:-2637672 None:intergenic
CTGCCGCACAAAAGCATTGC+AGG 0.340219 7.3:+2639917 MS.gene29897:CDS
TGGTAATTGTATTGCTTTCT+CGG 0.356387 7.3:+2640028 MS.gene29897:CDS
AGAGGAGTACATGCATTCTT+TGG 0.363021 7.3:+2640136 MS.gene29897:CDS
ATCCAGCTGCAGGAAGGATT+AGG 0.365308 7.3:+2637527 MS.gene29897:CDS
ATCACAAGCTACAAACTATA+AGG 0.369159 7.3:-2640480 None:intergenic
CTTGACTGCATGGGCAGAAA+TGG 0.369373 7.3:+2639629 MS.gene29897:CDS
GAGCTTTGTGGAAACCCATT+AGG 0.375078 7.3:+2640071 MS.gene29897:CDS
AAGTTCTCAGAAGTAAATTT+CGG 0.389814 7.3:+2640236 MS.gene29897:CDS
TCCAGCTGCAGGAAGGATTA+GGG 0.391602 7.3:+2637528 MS.gene29897:CDS
TCCCTAATCCTTCCTGCAGC+TGG 0.402307 7.3:-2637529 None:intergenic
AAACTAGGAGCACTCCTTGT+AGG 0.407155 7.3:-2640446 None:intergenic
CATTCAACCTGTATGGAATA+GGG 0.408225 7.3:+2639674 MS.gene29897:CDS
GCTAACCCTTTGTTGCTTGT+CGG 0.409807 7.3:+2639999 MS.gene29897:CDS
TTTCTTGGAAGCAAGGGAAT+GGG 0.413240 7.3:-2637657 None:intergenic
GTGTATGGTGGAGCAGTAAA+AGG 0.414611 7.3:+2640272 MS.gene29897:CDS
GGGTGCTGGGCGAAAGTTGA+TGG 0.420210 7.3:+2637552 MS.gene29897:CDS
AACCTTCCATTCAACCTGTA+TGG 0.427456 7.3:+2639667 MS.gene29897:CDS
TCATGAGGAGTGGGTGCAGC+TGG 0.430177 7.3:-2637355 None:intergenic
CAGCTCCATCGCCCATTGTA+TGG 0.433098 7.3:-2639593 None:intergenic
GGAAGGATTAGGGAGGGTGC+TGG 0.433324 7.3:+2637538 MS.gene29897:CDS
ACTCAACTGCATAACCTAAT+GGG 0.436624 7.3:-2640085 None:intergenic
GAAAGATGTTTATTTACAAA+GGG 0.441292 7.3:+2640179 MS.gene29897:CDS
GAAATTCTATACGATGTTCC+AGG 0.443086 7.3:+2637676 MS.gene29897:CDS
CTGTGAAGAAGAAAGATTGA+TGG 0.446115 7.3:-2639806 None:intergenic
GGAAAGATGTTTATTTACAA+AGG 0.447433 7.3:+2640178 MS.gene29897:CDS
CCTATTCCATACAGGTTGAA+TGG 0.453015 7.3:-2639673 None:intergenic
ATCATTCGTACCTCTTCATC+TGG 0.459290 7.3:-2639945 None:intergenic
AAGAATGCAAAAGGAGAAGA+AGG 0.460427 7.3:+2640338 MS.gene29897:CDS
ATTTCTTGGAAGCAAGGGAA+TGG 0.473618 7.3:-2637658 None:intergenic
CATAGCCGCGATTCGTCGCC+TGG 0.474719 7.3:+2639836 MS.gene29897:CDS
TACAAAGGGAAGAACTTGTA+TGG 0.478317 7.3:+2640193 MS.gene29897:CDS
AGAATCTCCCTATTCCATAC+AGG 0.480630 7.3:-2639681 None:intergenic
ATGGTGGATTGCACTGGGGA+GGG 0.483447 7.3:+2637571 MS.gene29897:CDS
CAAACCTCTTCATATCTTCA+GGG 0.484202 7.3:-2640385 None:intergenic
GCATCGTTAATGCACGTTCG+AGG 0.486409 7.3:+2639970 MS.gene29897:CDS
TCAATAATATATTCTGATCC+TGG 0.488870 7.3:-2637694 None:intergenic
TCCTTGATGTACGTATTTGG+CGG 0.490692 7.3:-2639762 None:intergenic
AAGACCTGTATGAGTCGAAC+GGG 0.490760 7.3:-2637721 None:intergenic
CAAGTGTGGTGGTTTCATAA+TGG 0.491746 7.3:+2639557 MS.gene29897:CDS
GAACTTGTATGGTGTCAGAT+TGG 0.493406 7.3:+2640204 MS.gene29897:CDS
GTTTATTACTATCCAGCTGC+AGG 0.495084 7.3:+2637517 MS.gene29897:CDS
TGGAAGTACCAACTCTGGTT+GGG 0.497528 7.3:-2637335 None:intergenic
GGATGGGGTGAAGCTGTGTA+TGG 0.499977 7.3:+2640257 MS.gene29897:CDS
ATGGAATAGGGAGATTCTAA+TGG 0.500842 7.3:+2639686 MS.gene29897:CDS
GAGAAAGGTGAAGTGGAACC+AGG 0.501342 7.3:-2639854 None:intergenic
GTCCCGCATAAGAATGCAAA+AGG 0.502043 7.3:+2640329 MS.gene29897:CDS
CATACAATGGGCGATGGAGC+TGG 0.513365 7.3:+2639594 MS.gene29897:CDS
GATGGTGGATTGCACTGGGG+AGG 0.517131 7.3:+2637570 MS.gene29897:CDS
CTGGAAGTACCAACTCTGGT+TGG 0.519392 7.3:-2637336 None:intergenic
TATAGAATTTCTTGGAAGCA+AGG 0.520340 7.3:-2637664 None:intergenic
TTCCATACAGGTTGAATGGA+AGG 0.520405 7.3:-2639669 None:intergenic
GAAGGATTAGGGAGGGTGCT+GGG 0.522109 7.3:+2637539 MS.gene29897:CDS
CGTATGCAGTGCATTGAGAA+AGG 0.526515 7.3:-2639869 None:intergenic
ATTCTTATGCGGGACAAGAA+AGG 0.526948 7.3:-2640321 None:intergenic
AGTTTAACTTCATGAGGAGT+GGG 0.527780 7.3:-2637364 None:intergenic
AAGTTGATGGTGGATTGCAC+TGG 0.528428 7.3:+2637565 MS.gene29897:CDS
GGAGCAGTAAAAGGTGGAGT+TGG 0.530628 7.3:+2640281 MS.gene29897:CDS
GAAAGAGAAAGACCCTGTTA+AGG 0.531454 7.3:+2637465 MS.gene29897:CDS
GGTTGCAAGTAACGTGTGGC+GGG 0.531576 7.3:-2639716 None:intergenic
CCGTCCCGTTCGACTCATAC+AGG 0.533062 7.3:+2637717 MS.gene29897:CDS
CTCCGCACTGTGAACAATAG+TGG 0.533503 7.3:-2637310 None:intergenic
CTCAGAAGTAAATTTCGGAT+GGG 0.534991 7.3:+2640241 MS.gene29897:CDS
TTCTTGGAAGCAAGGGAATG+GGG 0.535703 7.3:-2637656 None:intergenic
TCTCAGAAGTAAATTTCGGA+TGG 0.535849 7.3:+2640240 MS.gene29897:CDS
AAAGAGCTAAATGATATGCT+TGG 0.536007 7.3:+2640410 MS.gene29897:CDS
TGAGACAATTCTTGACTGCA+TGG 0.536512 7.3:+2639619 MS.gene29897:CDS
TTGAGCTTGAACCATACAAT+GGG 0.537449 7.3:+2639582 MS.gene29897:CDS
ACCACTGCAAAGGAGCTTTG+TGG 0.545376 7.3:+2640059 MS.gene29897:CDS
CCGCACAAAAGCATTGCAGG+TGG 0.552363 7.3:+2639920 MS.gene29897:CDS
AATATCCGACAAGCAACAAA+GGG 0.562922 7.3:-2640004 None:intergenic
GAGTTTAACTTCATGAGGAG+TGG 0.565045 7.3:-2637365 None:intergenic
TGGAACCAGGCGACGAATCG+CGG 0.566895 7.3:-2639841 None:intergenic
TCCACAAAGCTCCTTTGCAG+TGG 0.567433 7.3:-2640060 None:intergenic
CATTGTATGGTTCAAGCTCA+AGG 0.569460 7.3:-2639580 None:intergenic
AAGGTAGACAAGATGAAACT+AGG 0.571958 7.3:-2640461 None:intergenic
ATAGAATTTCTTGGAAGCAA+GGG 0.573708 7.3:-2637663 None:intergenic
GGCAGCAGTCACCACTGCAA+AGG 0.576150 7.3:+2640049 MS.gene29897:CDS
TCAGAAGTAAATTTCGGATG+GGG 0.577426 7.3:+2640242 MS.gene29897:CDS
GCAGCTGGAAGTACCAACTC+TGG 0.584510 7.3:-2637340 None:intergenic
CTTGAGCTTGAACCATACAA+TGG 0.589328 7.3:+2639581 MS.gene29897:CDS
AGCAAAAGCTCAAGTTACAG+AGG 0.589925 7.3:+2640118 MS.gene29897:CDS
TAATATCCGACAAGCAACAA+AGG 0.591430 7.3:-2640005 None:intergenic
GCAGGTGGAGCCAGATGAAG+AGG 0.592868 7.3:+2639935 MS.gene29897:CDS
TCTTGGAAGCAAGGGAATGG+GGG 0.595701 7.3:-2637655 None:intergenic
GAGACAATTCTTGACTGCAT+GGG 0.598914 7.3:+2639620 MS.gene29897:CDS
AGTTGATGGTGGATTGCACT+GGG 0.599197 7.3:+2637566 MS.gene29897:CDS
GAGAGGAGTTTAACTTCATG+AGG 0.599961 7.3:-2637370 None:intergenic
TGGGGTGAAGCTGTGTATGG+TGG 0.601746 7.3:+2640260 MS.gene29897:CDS
TGACGAAAGACAAATATGAC+AGG 0.607837 7.3:-2637430 None:intergenic
ATTACTATCCAGCTGCAGGA+AGG 0.614273 7.3:+2637521 MS.gene29897:CDS
GCGGAGGTCCCAACCAGAGT+TGG 0.615833 7.3:+2637327 MS.gene29897:CDS
TGACAGGAAGATTGAAACGA+AGG 0.615959 7.3:-2637414 None:intergenic
TAAGACCTGTATGAGTCGAA+CGG 0.619194 7.3:-2637722 None:intergenic
GTGCATTGAGAAAGGTGAAG+TGG 0.620215 7.3:-2639861 None:intergenic
TCCGCCAAATACGTACATCA+AGG 0.620796 7.3:+2639761 MS.gene29897:CDS
GCCTTCTTGATCATCTATGT+CGG 0.622425 7.3:-2637392 None:intergenic
GTAACCAAAATCATCCTACA+AGG 0.623110 7.3:+2640432 MS.gene29897:CDS
TGGTTGCAAGTAACGTGTGG+CGG 0.626899 7.3:-2639717 None:intergenic
TTGAACCATACAATGGGCGA+TGG 0.631288 7.3:+2639588 MS.gene29897:CDS
TGCTGGGCGAAAGTTGATGG+TGG 0.635555 7.3:+2637555 MS.gene29897:CDS
CCTGTATGAGTCGAACGGGA+CGG 0.638129 7.3:-2637717 None:intergenic
TCCGACATAGATGATCAAGA+AGG 0.646509 7.3:+2637391 MS.gene29897:CDS
AAACCTCTTCATATCTTCAG+GGG 0.652653 7.3:-2640384 None:intergenic
TATGGTGGAGCAGTAAAAGG+TGG 0.653295 7.3:+2640275 MS.gene29897:CDS
CATGTTTAAGAACCTTAACA+GGG 0.656931 7.3:-2637477 None:intergenic
AGCTGCAGGAAGGATTAGGG+AGG 0.663235 7.3:+2637531 MS.gene29897:CDS
AGAATGCAAAAGGAGAAGAA+GGG 0.663405 7.3:+2640339 MS.gene29897:CDS
GTTACACGTCTCAAGTGTGG+TGG 0.666120 7.3:+2639546 MS.gene29897:CDS
AACCTCTTCATATCTTCAGG+GGG 0.666136 7.3:-2640383 None:intergenic
CAGGTTACACGTCTCAAGTG+TGG 0.668116 7.3:+2639543 MS.gene29897:intron
CGATGGTTGCAAGTAACGTG+TGG 0.669479 7.3:-2639720 None:intergenic
GTATTTGTTCGTATTCACGA+TGG 0.674672 7.3:-2639737 None:intergenic
CTTGATCATCTATGTCGGAG+AGG 0.675142 7.3:-2637387 None:intergenic
CACTATTGTTCACAGTGCGG+AGG 0.677341 7.3:+2637311 MS.gene29897:CDS
GCATGGGCAGAAATGGCTCG+AGG 0.681407 7.3:+2639636 MS.gene29897:CDS
GCTGCAGGAAGGATTAGGGA+GGG 0.683826 7.3:+2637532 MS.gene29897:CDS
CACCACTATTGTTCACAGTG+CGG 0.732056 7.3:+2637308 MS.gene29897:CDS
GTTGATGGTGGATTGCACTG+GGG 0.762765 7.3:+2637567 MS.gene29897:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAATTAATATAAATTCAT+AGG - chr7.3:2639022-2639041 None:intergenic 10.0%
!!! ATATATAGTTTTCTAAATTT+TGG - chr7.3:2638433-2638452 None:intergenic 10.0%
!! AAAATTTGTCGAATAAAAAA+TGG - chr7.3:2638298-2638317 None:intergenic 15.0%
!! AAATAATTGCATTATATAAG+TGG - chr7.3:2638963-2638982 None:intergenic 15.0%
!! TAAGTATAAAATGACATAAA+AGG + chr7.3:2638140-2638159 MS.gene29897:intron 15.0%
!! TGATCAATAATTAAATTTCA+AGG - chr7.3:2637766-2637785 None:intergenic 15.0%
!!! AAACACATTATTTTTAATAG+CGG - chr7.3:2638093-2638112 None:intergenic 15.0%
!!! TATATAATTTATTTGTTGTG+TGG - chr7.3:2638787-2638806 None:intergenic 15.0%
!! ACTTAAAAATAGTGTAAAGT+TGG - chr7.3:2639236-2639255 None:intergenic 20.0%
!! GAAAGATGTTTATTTACAAA+GGG + chr7.3:2640179-2640198 MS.gene29897:CDS 20.0%
!! GATAATTAGAATTAAATGAC+AGG + chr7.3:2639524-2639543 MS.gene29897:intron 20.0%
!! GCTATTAAAAATAATGTGTT+TGG + chr7.3:2638092-2638111 MS.gene29897:intron 20.0%
!! TAACATATACATACATCTTT+AGG + chr7.3:2639491-2639510 MS.gene29897:intron 20.0%
!! TATCCCAAAAAATAAAATGA+GGG - chr7.3:2639181-2639200 None:intergenic 20.0%
!! TCTTATATGAATTAAAAGCA+AGG + chr7.3:2638389-2638408 MS.gene29897:intron 20.0%
!! TTATCCCAAAAAATAAAATG+AGG - chr7.3:2639182-2639201 None:intergenic 20.0%
!!! AAACATCCTTGAAATTTTAT+AGG + chr7.3:2637791-2637810 MS.gene29897:intron 20.0%
!!! AACACATTATTTTTAATAGC+GGG - chr7.3:2638092-2638111 None:intergenic 20.0%
!!! TACCATTTTTCGTAAAAAAT+TGG - chr7.3:2639208-2639227 None:intergenic 20.0%
! AAAATGATTGTAATGAGATC+AGG + chr7.3:2637863-2637882 MS.gene29897:intron 25.0%
! AAATGATTGTAATGAGATCA+GGG + chr7.3:2637864-2637883 MS.gene29897:intron 25.0%
! AAGAGACCTATAAAATTTCA+AGG - chr7.3:2637800-2637819 None:intergenic 25.0%
! AAGTTCTCAGAAGTAAATTT+CGG + chr7.3:2640236-2640255 MS.gene29897:CDS 25.0%
! ATCCCAAAAAATAAAATGAG+GGG - chr7.3:2639180-2639199 None:intergenic 25.0%
! ATTTCACATTAAATATGCCT+TGG - chr7.3:2639338-2639357 None:intergenic 25.0%
! GATATAACACTTGATCAATT+TGG + chr7.3:2637619-2637638 MS.gene29897:CDS 25.0%
! GGAAAGATGTTTATTTACAA+AGG + chr7.3:2640178-2640197 MS.gene29897:CDS 25.0%
! TCAATAATATATTCTGATCC+TGG - chr7.3:2637697-2637716 None:intergenic 25.0%
! TCGTTTGTATATATACACAT+AGG - chr7.3:2638757-2638776 None:intergenic 25.0%
! TTTCACATTAAATATGCCTT+GGG - chr7.3:2639337-2639356 None:intergenic 25.0%
!! ATTATCATGCATTAACTTGA+TGG - chr7.3:2639126-2639145 None:intergenic 25.0%
!! GAATTTTAGACTTGGAATAA+AGG + chr7.3:2637931-2637950 MS.gene29897:intron 25.0%
!! TATTCCAAGTCTAAAATTCA+GGG - chr7.3:2637930-2637949 None:intergenic 25.0%
!! TGATCTCATTACAATCATTT+TGG - chr7.3:2637864-2637883 None:intergenic 25.0%
!! TTATTCCAAGTCTAAAATTC+AGG - chr7.3:2637931-2637950 None:intergenic 25.0%
!!! AGCCAATTTTTTACGAAAAA+TGG + chr7.3:2639203-2639222 MS.gene29897:intron 25.0%
!!! CTATTAGTCTTTGAAGTTAT+CGG - chr7.3:2639277-2639296 None:intergenic 25.0%
!!! TAATTTTCAAGCTTTCTAAC+CGG + chr7.3:2639142-2639161 MS.gene29897:intron 25.0%
!!! TATTAGTCTTTGAAGTTATC+GGG - chr7.3:2639276-2639295 None:intergenic 25.0%
!!! TCAATGACATTAGTCTTTTT+AGG - chr7.3:2639448-2639467 None:intergenic 25.0%
!!! TTTTGGTGTTCACTTTTTTT+AGG - chr7.3:2638416-2638435 None:intergenic 25.0%
AAAGAGCTAAATGATATGCT+TGG + chr7.3:2640410-2640429 MS.gene29897:CDS 30.0%
ACTTTATGATGCTTACAACA+TGG + chr7.3:2638868-2638887 MS.gene29897:intron 30.0%
ATAGAATTTCTTGGAAGCAA+GGG - chr7.3:2637666-2637685 None:intergenic 30.0%
ATCTTATCACTGCATGTTAT+TGG + chr7.3:2639892-2639911 MS.gene29897:CDS 30.0%
CATGTTTAAGAACCTTAACA+GGG - chr7.3:2637480-2637499 None:intergenic 30.0%
CTAAAGCGAACTATAATATG+AGG - chr7.3:2639059-2639078 None:intergenic 30.0%
CTCATATTATAGTTCGCTTT+AGG + chr7.3:2639057-2639076 MS.gene29897:intron 30.0%
CTTTATGATGCTTACAACAT+GGG + chr7.3:2638869-2638888 MS.gene29897:intron 30.0%
GAACATCGTATAGAATTTCT+TGG - chr7.3:2637675-2637694 None:intergenic 30.0%
TATAGAATTTCTTGGAAGCA+AGG - chr7.3:2637667-2637686 None:intergenic 30.0%
TGGTAATTGTATTGCTTTCT+CGG + chr7.3:2640028-2640047 MS.gene29897:CDS 30.0%
! ATTCCAAGTCTAAAATTCAG+GGG - chr7.3:2637929-2637948 None:intergenic 30.0%
! GAATTAGCTTATAAGCTTGT+TGG - chr7.3:2638694-2638713 None:intergenic 30.0%
! GGCAGATTTTATGGTTATTA+AGG + chr7.3:2640157-2640176 MS.gene29897:CDS 30.0%
!! AATAAACTGTGAGGTTTTAG+TGG + chr7.3:2638470-2638489 MS.gene29897:intron 30.0%
!! TAATAGCTTGTTTGGAATAG+CGG + chr7.3:2639291-2639310 MS.gene29897:intron 30.0%
!! TCAAAGACTAATAGCTTGTT+TGG + chr7.3:2639283-2639302 MS.gene29897:intron 30.0%
!!! ACATAGTTTTGTCTATCATG+AGG - chr7.3:2637957-2637976 None:intergenic 30.0%
!!! GACCCCTCATTTTATTTTTT+GGG + chr7.3:2639175-2639194 MS.gene29897:intron 30.0%
AAACCTCTTCATATCTTCAG+GGG - chr7.3:2640387-2640406 None:intergenic 35.0%
AACTCAACTGCATAACCTAA+TGG - chr7.3:2640089-2640108 None:intergenic 35.0%
AAGAATGCAAAAGGAGAAGA+AGG + chr7.3:2640338-2640357 MS.gene29897:CDS 35.0%
AAGGTAGACAAGATGAAACT+AGG - chr7.3:2640464-2640483 None:intergenic 35.0%
AATATCCGACAAGCAACAAA+GGG - chr7.3:2640007-2640026 None:intergenic 35.0%
ACAAACCTCTTCATATCTTC+AGG - chr7.3:2640389-2640408 None:intergenic 35.0%
ACTCAACTGCATAACCTAAT+GGG - chr7.3:2640088-2640107 None:intergenic 35.0%
ACTTTGTCATGAAGCAAAGA+TGG + chr7.3:2638835-2638854 MS.gene29897:intron 35.0%
AGAATGCAAAAGGAGAAGAA+GGG + chr7.3:2640339-2640358 MS.gene29897:CDS 35.0%
ATATACACATAGGCTGTGTT+TGG - chr7.3:2638747-2638766 None:intergenic 35.0%
ATGGAATAGGGAGATTCTAA+TGG + chr7.3:2639686-2639705 MS.gene29897:CDS 35.0%
CAAACCTCTTCATATCTTCA+GGG - chr7.3:2640388-2640407 None:intergenic 35.0%
CATTCAACCTGTATGGAATA+GGG + chr7.3:2639674-2639693 MS.gene29897:CDS 35.0%
CTCAGAAGTAAATTTCGGAT+GGG + chr7.3:2640241-2640260 MS.gene29897:CDS 35.0%
CTGTGAAGAAGAAAGATTGA+TGG - chr7.3:2639809-2639828 None:intergenic 35.0%
GAAATTCTATACGATGTTCC+AGG + chr7.3:2637676-2637695 MS.gene29897:CDS 35.0%
GACAAAACTATGTCTCTGTT+TGG + chr7.3:2637964-2637983 MS.gene29897:intron 35.0%
GCATGTTTAAGAACCTTAAC+AGG - chr7.3:2637481-2637500 None:intergenic 35.0%
GGTAAAATTAGCTGTTGAAG+TGG + chr7.3:2638113-2638132 MS.gene29897:intron 35.0%
GTAACCAAAATCATCCTACA+AGG + chr7.3:2640432-2640451 MS.gene29897:CDS 35.0%
GTATTTGTTCGTATTCACGA+TGG - chr7.3:2639740-2639759 None:intergenic 35.0%
GTGCATTGTAAAGTTGTATG+AGG - chr7.3:2638905-2638924 None:intergenic 35.0%
TAATATCCGACAAGCAACAA+AGG - chr7.3:2640008-2640027 None:intergenic 35.0%
TACAAAGGGAAGAACTTGTA+TGG + chr7.3:2640193-2640212 MS.gene29897:CDS 35.0%
TCAGAAGTAAATTTCGGATG+GGG + chr7.3:2640242-2640261 MS.gene29897:CDS 35.0%
TCTCAGAAGTAAATTTCGGA+TGG + chr7.3:2640240-2640259 MS.gene29897:CDS 35.0%
TCTTCCTTGATGTACGTATT+TGG - chr7.3:2639768-2639787 None:intergenic 35.0%
TGACGAAAGACAAATATGAC+AGG - chr7.3:2637433-2637452 None:intergenic 35.0%
TTGAGCTTGAACCATACAAT+GGG + chr7.3:2639582-2639601 MS.gene29897:CDS 35.0%
TTTAGGCCTTAGAATGTGTT+AGG + chr7.3:2639074-2639093 MS.gene29897:intron 35.0%
! AAGTGTTGTAAGTGTAGCAT+TGG - chr7.3:2638940-2638959 None:intergenic 35.0%
! AGTTTAACTTCATGAGGAGT+GGG - chr7.3:2637367-2637386 None:intergenic 35.0%
! GCATTCTTTGGCAGATTTTA+TGG + chr7.3:2640148-2640167 MS.gene29897:CDS 35.0%
! TCTCCTTTTGCATTCTTATG+CGG - chr7.3:2640335-2640354 None:intergenic 35.0%
! TTGTTGCTTGTCGGATATTA+TGG + chr7.3:2640008-2640027 MS.gene29897:CDS 35.0%
!!! GGACCCCTCATTTTATTTTT+TGG + chr7.3:2639174-2639193 MS.gene29897:intron 35.0%
AACCTCTTCATATCTTCAGG+GGG - chr7.3:2640386-2640405 None:intergenic 40.0%
AACCTTCCATTCAACCTGTA+TGG + chr7.3:2639667-2639686 MS.gene29897:CDS 40.0%
AGAATCTCCCTATTCCATAC+AGG - chr7.3:2639684-2639703 None:intergenic 40.0%
AGCAAAAGCTCAAGTTACAG+AGG + chr7.3:2640118-2640137 MS.gene29897:CDS 40.0%
ATCATTCGTACCTCTTCATC+TGG - chr7.3:2639948-2639967 None:intergenic 40.0%
ATTCTTATGCGGGACAAGAA+AGG - chr7.3:2640324-2640343 None:intergenic 40.0%
ATTTCTTGGAAGCAAGGGAA+TGG - chr7.3:2637661-2637680 None:intergenic 40.0%
CAAGTGTGGTGGTTTCATAA+TGG + chr7.3:2639557-2639576 MS.gene29897:CDS 40.0%
CATTGTATGGTTCAAGCTCA+AGG - chr7.3:2639583-2639602 None:intergenic 40.0%
CCATTCAACCTGTATGGAAT+AGG + chr7.3:2639673-2639692 MS.gene29897:CDS 40.0%
CTTGAGCTTGAACCATACAA+TGG + chr7.3:2639581-2639600 MS.gene29897:CDS 40.0%
CTTTCCATCTCATTCAGTGT+CGG - chr7.3:2639100-2639119 None:intergenic 40.0%
GAAAGAGAAAGACCCTGTTA+AGG + chr7.3:2637465-2637484 MS.gene29897:CDS 40.0%
GAGACAATTCTTGACTGCAT+GGG + chr7.3:2639620-2639639 MS.gene29897:CDS 40.0%
GATAGCTGATAGCTTATAGC+TGG + chr7.3:2638062-2638081 MS.gene29897:intron 40.0%
GCCTTCTTGATCATCTATGT+CGG - chr7.3:2637395-2637414 None:intergenic 40.0%
GGATCAAAATGTGACGTGTT+TGG - chr7.3:2638673-2638692 None:intergenic 40.0%
GGGTCTTTCTCTTTCATTGA+TGG - chr7.3:2637460-2637479 None:intergenic 40.0%
GTTTATTACTATCCAGCTGC+AGG + chr7.3:2637517-2637536 MS.gene29897:CDS 40.0%
GTTTATTGCAAGTCACGACA+TGG - chr7.3:2638457-2638476 None:intergenic 40.0%
TAAGACCTGTATGAGTCGAA+CGG - chr7.3:2637725-2637744 None:intergenic 40.0%
TCCGACATAGATGATCAAGA+AGG + chr7.3:2637391-2637410 MS.gene29897:CDS 40.0%
TCCTTGATGTACGTATTTGG+CGG - chr7.3:2639765-2639784 None:intergenic 40.0%
TGACAGGAAGATTGAAACGA+AGG - chr7.3:2637417-2637436 None:intergenic 40.0%
TGAGACAATTCTTGACTGCA+TGG + chr7.3:2639619-2639638 MS.gene29897:CDS 40.0%
TTTCTTGGAAGCAAGGGAAT+GGG - chr7.3:2637660-2637679 None:intergenic 40.0%
! AGAGGAGTACATGCATTCTT+TGG + chr7.3:2640136-2640155 MS.gene29897:CDS 40.0%
! CACTCCTTGTAGGATGATTT+TGG - chr7.3:2640439-2640458 None:intergenic 40.0%
! CCTATTCCATACAGGTTGAA+TGG - chr7.3:2639676-2639695 None:intergenic 40.0%
! CTCCTTTTGCATTCTTATGC+GGG - chr7.3:2640334-2640353 None:intergenic 40.0%
! GAACTTGTATGGTGTCAGAT+TGG + chr7.3:2640204-2640223 MS.gene29897:CDS 40.0%
! GAGAGGAGTTTAACTTCATG+AGG - chr7.3:2637373-2637392 None:intergenic 40.0%
! GAGTTTAACTTCATGAGGAG+TGG - chr7.3:2637368-2637387 None:intergenic 40.0%
! GTGACTTGCAATAAACTGTG+AGG + chr7.3:2638461-2638480 MS.gene29897:intron 40.0%
! GTGGAGTTGGATCTTTTCTT+GGG + chr7.3:2640294-2640313 MS.gene29897:CDS 40.0%
! TGGAGTTGGATCTTTTCTTG+GGG + chr7.3:2640295-2640314 MS.gene29897:CDS 40.0%
! TGTTGTAAGTGTAGCATTGG+CGG - chr7.3:2638937-2638956 None:intergenic 40.0%
! TTCCATACAGGTTGAATGGA+AGG - chr7.3:2639672-2639691 None:intergenic 40.0%
AAGACCTGTATGAGTCGAAC+GGG - chr7.3:2637724-2637743 None:intergenic 45.0%
AAGCTTTCTAACCGGTCCAA+CGG + chr7.3:2639150-2639169 MS.gene29897:intron 45.0%
AGCCTTAAAACGTGGGAACA+TGG + chr7.3:2638498-2638517 MS.gene29897:intron 45.0%
ATTACTATCCAGCTGCAGGA+AGG + chr7.3:2637521-2637540 MS.gene29897:CDS 45.0%
CACCACTATTGTTCACAGTG+CGG + chr7.3:2637308-2637327 MS.gene29897:CDS 45.0%
CATTCACCGCTAAAACAGAC+AGG + chr7.3:2639407-2639426 MS.gene29897:intron 45.0%
CGTATGCAGTGCATTGAGAA+AGG - chr7.3:2639872-2639891 None:intergenic 45.0%
CTTGATCATCTATGTCGGAG+AGG - chr7.3:2637390-2637409 None:intergenic 45.0%
GATTGTAATGAGATCAGGGC+TGG + chr7.3:2637868-2637887 MS.gene29897:intron 45.0%
GCCTTAAAACGTGGGAACAT+GGG + chr7.3:2638499-2638518 MS.gene29897:intron 45.0%
GGCAGTAAGCCTTAAAACGT+GGG + chr7.3:2638491-2638510 MS.gene29897:intron 45.0%
GTCCCGCATAAGAATGCAAA+AGG + chr7.3:2640329-2640348 MS.gene29897:CDS 45.0%
GTGCATTGAGAAAGGTGAAG+TGG - chr7.3:2639864-2639883 None:intergenic 45.0%
TCCGCCAAATACGTACATCA+AGG + chr7.3:2639761-2639780 MS.gene29897:CDS 45.0%
TGGCAGTAAGCCTTAAAACG+TGG + chr7.3:2638490-2638509 MS.gene29897:intron 45.0%
TGTCGGCCTAACACATTCTA+AGG - chr7.3:2639083-2639102 None:intergenic 45.0%
TTAAAACGTGGGAACATGGG+TGG + chr7.3:2638502-2638521 MS.gene29897:intron 45.0%
TTCTTGGAAGCAAGGGAATG+GGG - chr7.3:2637659-2637678 None:intergenic 45.0%
TTGAACCATACAATGGGCGA+TGG + chr7.3:2639588-2639607 MS.gene29897:CDS 45.0%
! ACCCATGTTCCCACGTTTTA+AGG - chr7.3:2638503-2638522 None:intergenic 45.0%
! AGGCCCCTGAATTTTAGACT+TGG + chr7.3:2637923-2637942 MS.gene29897:intron 45.0%
! GAGCTTTGTGGAAACCCATT+AGG + chr7.3:2640071-2640090 MS.gene29897:CDS 45.0%
! GCTAACCCTTTGTTGCTTGT+CGG + chr7.3:2639999-2640018 MS.gene29897:CDS 45.0%
! GGAGTTGGATCTTTTCTTGG+GGG + chr7.3:2640296-2640315 MS.gene29897:CDS 45.0%
! GGTGGAGTTGGATCTTTTCT+TGG + chr7.3:2640293-2640312 MS.gene29897:CDS 45.0%
! GTGTATGGTGGAGCAGTAAA+AGG + chr7.3:2640272-2640291 MS.gene29897:CDS 45.0%
! TATGGTGGAGCAGTAAAAGG+TGG + chr7.3:2640275-2640294 MS.gene29897:CDS 45.0%
!! AAACTAGGAGCACTCCTTGT+AGG - chr7.3:2640449-2640468 None:intergenic 45.0%
!! AAGTTGATGGTGGATTGCAC+TGG + chr7.3:2637565-2637584 MS.gene29897:CDS 45.0%
!! AGTTGATGGTGGATTGCACT+GGG + chr7.3:2637566-2637585 MS.gene29897:CDS 45.0%
!! GTAGCTCCTGTCTGTTTTAG+CGG - chr7.3:2639416-2639435 None:intergenic 45.0%
!! TGGAAGTACCAACTCTGGTT+GGG - chr7.3:2637338-2637357 None:intergenic 45.0%
!! TTTGCATTTCTAGCGTCCCA+AGG + chr7.3:2639318-2639337 MS.gene29897:intron 45.0%
!! ATAATAAAATTAAATTAACA+AGG + chr7.3:2638545-2638564 MS.gene29897:intron 5.0%
AAATTCAGGGGCCTAAAGCG+AGG - chr7.3:2637917-2637936 None:intergenic 50.0%
AATTCAGGGGCCTAAAGCGA+GGG - chr7.3:2637916-2637935 None:intergenic 50.0%
ACCACTGCAAAGGAGCTTTG+TGG + chr7.3:2640059-2640078 MS.gene29897:CDS 50.0%
ATCCAGCTGCAGGAAGGATT+AGG + chr7.3:2637527-2637546 MS.gene29897:CDS 50.0%
CACTATTGTTCACAGTGCGG+AGG + chr7.3:2637311-2637330 MS.gene29897:CDS 50.0%
CAGGTTACACGTCTCAAGTG+TGG + chr7.3:2639543-2639562 MS.gene29897:intron 50.0%
CGATGGTTGCAAGTAACGTG+TGG - chr7.3:2639723-2639742 None:intergenic 50.0%
CTCCGCACTGTGAACAATAG+TGG - chr7.3:2637313-2637332 None:intergenic 50.0%
CTTGACTGCATGGGCAGAAA+TGG + chr7.3:2639629-2639648 MS.gene29897:CDS 50.0%
GAGAAAGGTGAAGTGGAACC+AGG - chr7.3:2639857-2639876 None:intergenic 50.0%
GCATCGTTAATGCACGTTCG+AGG + chr7.3:2639970-2639989 MS.gene29897:CDS 50.0%
GGAGCAGTAAAAGGTGGAGT+TGG + chr7.3:2640281-2640300 MS.gene29897:CDS 50.0%
GTTACACGTCTCAAGTGTGG+TGG + chr7.3:2639546-2639565 MS.gene29897:CDS 50.0%
TAAAATGAGGGGTCCACCGT+TGG - chr7.3:2639169-2639188 None:intergenic 50.0%
TAGGCCGACACTGAATGAGA+TGG + chr7.3:2639093-2639112 MS.gene29897:intron 50.0%
TCCACAAAGCTCCTTTGCAG+TGG - chr7.3:2640063-2640082 None:intergenic 50.0%
TCCAGCTGCAGGAAGGATTA+GGG + chr7.3:2637528-2637547 MS.gene29897:CDS 50.0%
TCTTCAGGGGGCAAGCAAAT+TGG - chr7.3:2640374-2640393 None:intergenic 50.0%
TCTTGGAAGCAAGGGAATGG+GGG - chr7.3:2637658-2637677 None:intergenic 50.0%
TGCCCCCTGAAGATATGAAG+AGG + chr7.3:2640381-2640400 MS.gene29897:CDS 50.0%
TGGTTGCAAGTAACGTGTGG+CGG - chr7.3:2639720-2639739 None:intergenic 50.0%
! CCACCTGCAATGCTTTTGTG+CGG - chr7.3:2639923-2639942 None:intergenic 50.0%
!! CTGGAAGTACCAACTCTGGT+TGG - chr7.3:2637339-2637358 None:intergenic 50.0%
!! GTTGATGGTGGATTGCACTG+GGG + chr7.3:2637567-2637586 MS.gene29897:CDS 50.0%
!! GTTTGGGTTGCCTTACCCTT+AGG - chr7.3:2637894-2637913 None:intergenic 50.0%
AGCTGCAGGAAGGATTAGGG+AGG + chr7.3:2637531-2637550 MS.gene29897:CDS 55.0%
CAGCTCCATCGCCCATTGTA+TGG - chr7.3:2639596-2639615 None:intergenic 55.0%
CATACAATGGGCGATGGAGC+TGG + chr7.3:2639594-2639613 MS.gene29897:CDS 55.0%
CCTGTATGAGTCGAACGGGA+CGG - chr7.3:2637720-2637739 None:intergenic 55.0%
CTTTCTAACCGGTCCAACGG+TGG + chr7.3:2639153-2639172 MS.gene29897:intron 55.0%
GCAACCCAAACCCTCGCTTT+AGG + chr7.3:2637903-2637922 MS.gene29897:intron 55.0%
GCTGCAGGAAGGATTAGGGA+GGG + chr7.3:2637532-2637551 MS.gene29897:CDS 55.0%
GGATGGGGTGAAGCTGTGTA+TGG + chr7.3:2640257-2640276 MS.gene29897:CDS 55.0%
GGTTGCAAGTAACGTGTGGC+GGG - chr7.3:2639719-2639738 None:intergenic 55.0%
TCCCTAATCCTTCCTGCAGC+TGG - chr7.3:2637532-2637551 None:intergenic 55.0%
TGGGGTGAAGCTGTGTATGG+TGG + chr7.3:2640260-2640279 MS.gene29897:CDS 55.0%
!! ATGAGATCAGGGCTGGCCTA+AGG + chr7.3:2637875-2637894 MS.gene29897:intron 55.0%
!! ATGGTGGATTGCACTGGGGA+GGG + chr7.3:2637571-2637590 MS.gene29897:CDS 55.0%
!! CCGCACAAAAGCATTGCAGG+TGG + chr7.3:2639920-2639939 MS.gene29897:CDS 55.0%
!! CTGCCGCACAAAAGCATTGC+AGG + chr7.3:2639917-2639936 MS.gene29897:CDS 55.0%
!! GAAGGATTAGGGAGGGTGCT+GGG + chr7.3:2637539-2637558 MS.gene29897:CDS 55.0%
!! GCAGCTGGAAGTACCAACTC+TGG - chr7.3:2637343-2637362 None:intergenic 55.0%
!! TGAGATCAGGGCTGGCCTAA+GGG + chr7.3:2637876-2637895 MS.gene29897:intron 55.0%
!! TGCTGGGCGAAAGTTGATGG+TGG + chr7.3:2637555-2637574 MS.gene29897:CDS 55.0%
AGGGGCCTAAAGCGAGGGTT+TGG - chr7.3:2637911-2637930 None:intergenic 60.0%
CCGTCCCGTTCGACTCATAC+AGG + chr7.3:2637717-2637736 MS.gene29897:CDS 60.0%
GCAGGTGGAGCCAGATGAAG+AGG + chr7.3:2639935-2639954 MS.gene29897:CDS 60.0%
GCATGGGCAGAAATGGCTCG+AGG + chr7.3:2639636-2639655 MS.gene29897:CDS 60.0%
GGCAGCAGTCACCACTGCAA+AGG + chr7.3:2640049-2640068 MS.gene29897:CDS 60.0%
GGGGCCTAAAGCGAGGGTTT+GGG - chr7.3:2637910-2637929 None:intergenic 60.0%
TCATGAGGAGTGGGTGCAGC+TGG - chr7.3:2637358-2637377 None:intergenic 60.0%
TGGAACCAGGCGACGAATCG+CGG - chr7.3:2639844-2639863 None:intergenic 60.0%
! GGAAGGATTAGGGAGGGTGC+TGG + chr7.3:2637538-2637557 MS.gene29897:CDS 60.0%
!! GATGGTGGATTGCACTGGGG+AGG + chr7.3:2637570-2637589 MS.gene29897:CDS 60.0%
!! GGGTGCTGGGCGAAAGTTGA+TGG + chr7.3:2637552-2637571 MS.gene29897:CDS 60.0%
!! TCAGGGCTGGCCTAAGGGTA+AGG + chr7.3:2637881-2637900 MS.gene29897:intron 60.0%
CATAGCCGCGATTCGTCGCC+TGG + chr7.3:2639836-2639855 MS.gene29897:CDS 65.0%
GCGGAGGTCCCAACCAGAGT+TGG + chr7.3:2637327-2637346 MS.gene29897:CDS 65.0%
TGAGGGGTCCACCGTTGGAC+CGG - chr7.3:2639164-2639183 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 2637295 2640487 2637295 ID=MS.gene29897
chr7.3 mRNA 2637295 2640487 2637295 ID=MS.gene29897.t1;Parent=MS.gene29897
chr7.3 exon 2637295 2637738 2637295 ID=MS.gene29897.t1.exon1;Parent=MS.gene29897.t1
chr7.3 CDS 2637295 2637738 2637295 ID=cds.MS.gene29897.t1;Parent=MS.gene29897.t1
chr7.3 exon 2639546 2640487 2639546 ID=MS.gene29897.t1.exon2;Parent=MS.gene29897.t1
chr7.3 CDS 2639546 2640487 2639546 ID=cds.MS.gene29897.t1;Parent=MS.gene29897.t1
Gene Sequence

>MS.gene29897

ATGACTTCTTCATCACCACTATTGTTCACAGTGCGGAGGTCCCAACCAGAGTTGGTACTTCCAGCTGCACCCACTCCTCATGAAGTTAAACTCCTCTCCGACATAGATGATCAAGAAGGCCTTCGTTTCAATCTTCCTGTCATATTTGTCTTTCGTCATGAACCATCAATGAAAGAGAAAGACCCTGTTAAGGTTCTTAAACATGCACTCTCACAAACACTTGTTTATTACTATCCAGCTGCAGGAAGGATTAGGGAGGGTGCTGGGCGAAAGTTGATGGTGGATTGCACTGGGGAGGGTGTCATGTTCATTGAAGCTGAAGCTGATATAACACTTGATCAATTTGGTGATGCTCTGCAACCCCCATTCCCTTGCTTCCAAGAAATTCTATACGATGTTCCAGGATCAGAATATATTATTGACCGTCCCGTTCGACTCATACAGGTCTTATTATAATAATTCTCGCATCCTTGAAATTTAATTATTGATCAAAACAAAACATCCTTGAAATTTTATAGGTCTCTTAACTACTATGTGACTTTAAAAATTTAATCTCTAGTGAAATTCCAAAATGATTGTAATGAGATCAGGGCTGGCCTAAGGGTAAGGCAACCCAAACCCTCGCTTTAGGCCCCTGAATTTTAGACTTGGAATAAAGGCCTCATGATAGACAAAACTATGTCTCTGTTTGGTAAAAAGAAGCTATAAGCTAGCTAATAGCTGATAAGCTAGCTGATAGCTGAAAAGCTAACTTATAGCTGATGACTGATAGCTGATAGCTTATAGCTGGAAAGCCCGCTATTAAAAATAATGTGTTTGGTAAAATTAGCTGTTGAAGTGGCTGATAAGTATAAAATGACATAAAAGGACATGTTTATTTATTTACTTTTTATAAATTATATATATAAATTTTTTTACTTAATGTATTTTTTTTAACTACTCAAATTTATTTGAAATTATTTTCATCTTCACATGATAAATGTGCTTTATGAATTAATTGCCATTTTTTATTCGACAAATTTTATTTTTTAACGAATTTTATTTAACTAAACTTGTTTCACTATTTATTTATTATATATTTTTTTAACATTCAATCTTATATGAATTAAAAGCAAGGTCCTAAAAAAAGTGAACACCAAAATTTAGAAAACTATATATACCATGTCGTGACTTGCAATAAACTGTGAGGTTTTAGTGGCAGTAAGCCTTAAAACGTGGGAACATGGGTGGTTATTTTTTTTAATTTAAAAATAATAAAATTAAATTAACAAGGTTATAATTGAAAAAAATTATAAGAAGCTATAAGCTACAAGCTCAAAAGCTACTTGAAATAGCTTTTCAAAAAAAGCTATAAGCTCACGAGAAAAGCTTGTTACCAAACACGTCACATTTTGATCCAACAAGCTTATAAGCTAATTCAAGAAGCTATAAGCTAGCTTTTTGTTGTTACCAAACACAGCCTATGTGTATATATACAAACGAATAAAAGCCACACAACAAATAAATTATATAAAGATTCAAAAAACAAATGAGTTATAAAACTTTGTCATGAAGCAAAGATGGTAGACGCGAGACTTTATGATGCTTACAACATGGGTTCAACACTTCCTCATACAACTTTACAATGCACACTATTTTTCCGCCAATGCTACACTTACAACACTTCCACTTATATAATGCAATTATTTATTTTTCTTTTTAGTTGTAATTTTTTTTTTATAAAACCTATGAATTTATATTAATTACACTCATTAAAAAAAGCCTCATATTATAGTTCGCTTTAGGCCTTAGAATGTGTTAGGCCGACACTGAATGAGATGGAAAGATTCCATCAAGTTAATGCATGATAATTTTCAAGCTTTCTAACCGGTCCAACGGTGGACCCCTCATTTTATTTTTTGGGATAAAAGCCAATTTTTTACGAAAAATGGTAAATGTCCAACTTTACACTATTTTTAAGTGATTCATATTACATACACCCGATAACTTCAAAGACTAATAGCTTGTTTGGAATAGCGGTAGATTTGCATTTCTAGCGTCCCAAGGCATATTTAATGTGAAATTGAAGAATATACAATTTGTAGCTTTAGAAAAAAACGTACATTAAGCTTGCATTCACCGCTAAAACAGACAGGAGCTACATAGAACTACCTAAAAAGACTAATGTCATTGATTTGATTTTTTTTTACTAGTTTATAACATATACATACATCTTTAGGTTACACGCATGATAATTAGAATTAAATGACAGGTTACACGTCTCAAGTGTGGTGGTTTCATAATGGCCTTGAGCTTGAACCATACAATGGGCGATGGAGCTGGTTTGAGACAATTCTTGACTGCATGGGCAGAAATGGCTCGAGGAGCAAATCAACCTTCCATTCAACCTGTATGGAATAGGGAGATTCTAATGGCAAGAGACCCGCCACACGTTACTTGCAACCATCGTGAATACGAACAAATACTTCCGCCAAATACGTACATCAAGGAAGAAGATACTACTATTGTAGTCCATCAATCTTTCTTCTTCACAGCTGCTCACATAGCCGCGATTCGTCGCCTGGTTCCACTTCACCTTTCTCAATGCACTGCATACGATCTTATCACTGCATGTTATTGGTGCTGCCGCACAAAAGCATTGCAGGTGGAGCCAGATGAAGAGGTACGAATGATGTGCATCGTTAATGCACGTTCGAGGTTTAGTGCTAACCCTTTGTTGCTTGTCGGATATTATGGTAATTGTATTGCTTTCTCGGCAGCAGTCACCACTGCAAAGGAGCTTTGTGGAAACCCATTAGGTTATGCAGTTGAGTTGATAAGAAAAGCAAAAGCTCAAGTTACAGAGGAGTACATGCATTCTTTGGCAGATTTTATGGTTATTAAGGAAAGATGTTTATTTACAAAGGGAAGAACTTGTATGGTGTCAGATTGGACTCGTGCTAAGTTCTCAGAAGTAAATTTCGGATGGGGTGAAGCTGTGTATGGTGGAGCAGTAAAAGGTGGAGTTGGATCTTTTCTTGGGGGAACCTTTCTTGTCCCGCATAAGAATGCAAAAGGAGAAGAAGGGTTAATATTACCAATTTGCTTGCCCCCTGAAGATATGAAGAGGTTTGTTAAAGAGCTAAATGATATGCTTGGTAACCAAAATCATCCTACAAGGAGTGCTCCTAGTTTCATCTTGTCTACCTTATAG
Protein sequence

>MS.gene29897.t1

MTSSSPLLFTVRRSQPELVLPAAPTPHEVKLLSDIDDQEGLRFNLPVIFVFRHEPSMKEKDPVKVLKHALSQTLVYYYPAAGRIREGAGRKLMVDCTGEGVMFIEAEADITLDQFGDALQPPFPCFQEILYDVPGSEYIIDRPVRLIQVTRLKCGGFIMALSLNHTMGDGAGLRQFLTAWAEMARGANQPSIQPVWNREILMARDPPHVTCNHREYEQILPPNTYIKEEDTTIVVHQSFFFTAAHIAAIRRLVPLHLSQCTAYDLITACYWCCRTKALQVEPDEEVRMMCIVNARSRFSANPLLLVGYYGNCIAFSAAVTTAKELCGNPLGYAVELIRKAKAQVTEEYMHSLADFMVIKERCLFTKGRTCMVSDWTRAKFSEVNFGWGEAVYGGAVKGGVGSFLGGTFLVPHKNAKGEEGLILPICLPPEDMKRFVKELNDMLGNQNHPTRSAPSFILSTL