Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32976.t1 | AES59281.1 | 76.6 | 184 | 21 | 1 | 1 | 184 | 204 | 365 | 9.60E-78 | 299.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32976.t1 | Q3EBZ2 | 36.8 | 190 | 96 | 5 | 7 | 178 | 207 | 390 | 9.0e-24 | 111.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32976.t1 | G7IB97 | 76.6 | 184 | 21 | 1 | 1 | 184 | 204 | 365 | 7.0e-78 | 299.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene32976 | 0.800809 | 1.21E-48 | -1.69E-46 |
| MS.gene049254 | MS.gene32976 | 0.838285 | 3.15E-57 | -1.69E-46 |
| MS.gene049404 | MS.gene32976 | 0.825372 | 4.86E-54 | -1.69E-46 |
| MS.gene050073 | MS.gene32976 | 0.810847 | 9.40E-51 | -1.69E-46 |
| MS.gene050273 | MS.gene32976 | 0.82157 | 3.76E-53 | -1.69E-46 |
| MS.gene050559 | MS.gene32976 | 0.835565 | 1.56E-56 | -1.69E-46 |
| MS.gene050561 | MS.gene32976 | 0.830475 | 2.88E-55 | -1.69E-46 |
| MS.gene050562 | MS.gene32976 | 0.823079 | 1.68E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene32976 | 0.812401 | 4.32E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene32976 | 0.836435 | 9.38E-57 | -1.69E-46 |
| MS.gene051332 | MS.gene32976 | 0.811644 | 6.32E-51 | -1.69E-46 |
| MS.gene051594 | MS.gene32976 | 0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene051628 | MS.gene32976 | 0.81344 | 2.56E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene32976 | 0.819071 | 1.41E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene32976 | 0.826451 | 2.69E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene32976 | 0.832454 | 9.37E-56 | -1.69E-46 |
| MS.gene051957 | MS.gene32976 | 0.819658 | 1.03E-52 | -1.69E-46 |
| MS.gene052239 | MS.gene32976 | -0.816751 | 4.71E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene32976 | 0.810178 | 1.31E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene32976 | 0.814897 | 1.22E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene32976 | 0.817663 | 2.93E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene32976 | 0.824929 | 6.18E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene32976 | 0.835319 | 1.80E-56 | -1.69E-46 |
| MS.gene052773 | MS.gene32976 | 0.813842 | 2.09E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene32976 | 0.806304 | 8.78E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene32976 | 0.811263 | 7.64E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene32976 | 0.801022 | 1.10E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene32976 | 0.833553 | 4.99E-56 | -1.69E-46 |
| MS.gene053599 | MS.gene32976 | 0.822275 | 2.58E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene32976 | 0.800556 | 1.36E-48 | -1.69E-46 |
| MS.gene054236 | MS.gene32976 | 0.801395 | 9.19E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene32976 | -0.807993 | 3.85E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene32976 | 0.84698 | 1.54E-59 | -1.69E-46 |
| MS.gene054775 | MS.gene32976 | 0.805887 | 1.07E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene32976 | 0.80141 | 9.12E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene32976 | 0.816761 | 4.68E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene32976 | 0.817365 | 3.42E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene32976 | 0.823946 | 1.05E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene32976 | 0.815799 | 7.68E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene32976 | 0.812149 | 4.90E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene32976 | 0.811208 | 7.85E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene32976 | 0.838949 | 2.12E-57 | -1.69E-46 |
| MS.gene057060 | MS.gene32976 | 0.817676 | 2.91E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene32976 | 0.821824 | 3.29E-53 | -1.69E-46 |
| MS.gene057314 | MS.gene32976 | 0.808378 | 3.19E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene32976 | 0.809511 | 1.83E-50 | -1.69E-46 |
| MS.gene057598 | MS.gene32976 | 0.80286 | 4.59E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene32976 | 0.819125 | 1.37E-52 | -1.69E-46 |
| MS.gene058008 | MS.gene32976 | 0.804904 | 1.73E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene32976 | 0.81658 | 5.14E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene32976 | 0.829016 | 6.52E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene32976 | 0.836745 | 7.82E-57 | -1.69E-46 |
| MS.gene058781 | MS.gene32976 | 0.806286 | 8.86E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene32976 | 0.80882 | 2.57E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene32976 | 0.816908 | 4.34E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene32976 | 0.829589 | 4.73E-55 | -1.69E-46 |
| MS.gene060365 | MS.gene32976 | 0.800238 | 1.58E-48 | -1.69E-46 |
| MS.gene060521 | MS.gene32976 | 0.814513 | 1.48E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene32976 | 0.811389 | 7.17E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32976.t1 | MTR_1g016570 | 76.630 | 184 | 21 | 1 | 1 | 184 | 204 | 365 | 2.02e-96 | 284 |
| MS.gene32976.t1 | MTR_1g016540 | 68.617 | 188 | 53 | 4 | 1 | 185 | 1 | 185 | 3.88e-85 | 249 |
| MS.gene32976.t1 | MTR_3g030080 | 63.889 | 180 | 55 | 2 | 1 | 180 | 204 | 373 | 1.04e-72 | 224 |
| MS.gene32976.t1 | MTR_2g047180 | 61.667 | 180 | 51 | 5 | 7 | 183 | 206 | 370 | 5.85e-65 | 204 |
| MS.gene32976.t1 | MTR_3g029650 | 58.470 | 183 | 64 | 3 | 1 | 180 | 189 | 362 | 1.49e-63 | 209 |
| MS.gene32976.t1 | MTR_3g029650 | 46.237 | 186 | 84 | 7 | 1 | 180 | 576 | 751 | 2.31e-36 | 134 |
| MS.gene32976.t1 | MTR_3g030380 | 55.556 | 180 | 63 | 3 | 1 | 180 | 196 | 358 | 2.68e-55 | 179 |
| MS.gene32976.t1 | MTR_3g092000 | 54.167 | 192 | 68 | 4 | 1 | 186 | 229 | 406 | 5.22e-55 | 179 |
| MS.gene32976.t1 | MTR_1g049170 | 55.801 | 181 | 64 | 5 | 1 | 178 | 216 | 383 | 9.94e-55 | 178 |
| MS.gene32976.t1 | MTR_3g030480 | 56.354 | 181 | 55 | 5 | 1 | 178 | 194 | 353 | 2.86e-53 | 173 |
| MS.gene32976.t1 | MTR_3g030440 | 55.801 | 181 | 56 | 5 | 1 | 178 | 195 | 354 | 3.09e-53 | 173 |
| MS.gene32976.t1 | MTR_6g018315 | 52.459 | 183 | 76 | 4 | 1 | 178 | 189 | 365 | 2.82e-52 | 172 |
| MS.gene32976.t1 | MTR_3g091990 | 54.545 | 187 | 72 | 5 | 1 | 184 | 215 | 391 | 1.81e-51 | 170 |
| MS.gene32976.t1 | MTR_6g018390 | 52.809 | 178 | 68 | 5 | 1 | 178 | 204 | 365 | 7.38e-50 | 165 |
| MS.gene32976.t1 | MTR_6g018360 | 50.820 | 183 | 79 | 4 | 1 | 178 | 204 | 380 | 1.12e-47 | 160 |
| MS.gene32976.t1 | MTR_3g030360 | 51.099 | 182 | 52 | 4 | 1 | 181 | 208 | 353 | 1.23e-46 | 156 |
| MS.gene32976.t1 | MTR_6g027040 | 52.222 | 180 | 68 | 5 | 1 | 178 | 212 | 375 | 2.36e-46 | 156 |
| MS.gene32976.t1 | MTR_6g027100 | 52.222 | 180 | 68 | 5 | 1 | 178 | 212 | 375 | 2.95e-46 | 157 |
| MS.gene32976.t1 | MTR_5g042230 | 51.786 | 168 | 74 | 3 | 1 | 167 | 27 | 188 | 4.97e-46 | 150 |
| MS.gene32976.t1 | MTR_3g029920 | 49.727 | 183 | 76 | 5 | 2 | 181 | 212 | 381 | 4.27e-45 | 153 |
| MS.gene32976.t1 | MTR_3g029750 | 47.222 | 180 | 83 | 5 | 1 | 180 | 220 | 387 | 6.88e-45 | 152 |
| MS.gene32976.t1 | MTR_3g029620 | 51.381 | 181 | 67 | 8 | 6 | 182 | 213 | 376 | 1.74e-44 | 151 |
| MS.gene32976.t1 | MTR_3g037710 | 44.615 | 195 | 78 | 5 | 1 | 178 | 81 | 262 | 7.80e-44 | 147 |
| MS.gene32976.t1 | MTR_1g007250 | 51.462 | 171 | 72 | 4 | 1 | 171 | 1 | 160 | 1.19e-43 | 143 |
| MS.gene32976.t1 | MTR_3g029670 | 48.333 | 180 | 81 | 5 | 1 | 180 | 220 | 387 | 1.25e-43 | 149 |
| MS.gene32976.t1 | MTR_3g030050 | 42.991 | 214 | 77 | 5 | 1 | 178 | 216 | 420 | 4.23e-43 | 149 |
| MS.gene32976.t1 | MTR_1g007260 | 50.575 | 174 | 75 | 5 | 1 | 174 | 221 | 383 | 7.49e-43 | 147 |
| MS.gene32976.t1 | MTR_3g029640 | 49.718 | 177 | 68 | 7 | 6 | 178 | 204 | 363 | 2.79e-42 | 145 |
| MS.gene32976.t1 | MTR_3g030355 | 45.312 | 192 | 81 | 5 | 1 | 180 | 216 | 395 | 4.15e-42 | 145 |
| MS.gene32976.t1 | MTR_1g026850 | 49.171 | 181 | 78 | 5 | 1 | 178 | 194 | 363 | 1.21e-41 | 144 |
| MS.gene32976.t1 | MTR_6g018400 | 47.253 | 182 | 73 | 4 | 1 | 178 | 206 | 368 | 3.11e-41 | 142 |
| MS.gene32976.t1 | MTR_5g078450 | 52.113 | 142 | 46 | 1 | 44 | 185 | 5 | 124 | 2.45e-40 | 133 |
| MS.gene32976.t1 | MTR_3g029900 | 50.000 | 180 | 63 | 6 | 1 | 178 | 303 | 457 | 4.20e-39 | 139 |
| MS.gene32976.t1 | MTR_3g030560 | 48.023 | 177 | 74 | 5 | 6 | 178 | 210 | 372 | 1.93e-38 | 135 |
| MS.gene32976.t1 | MTR_3g029840 | 48.108 | 185 | 60 | 7 | 1 | 180 | 203 | 356 | 1.13e-36 | 130 |
| MS.gene32976.t1 | MTR_3g029820 | 50.000 | 180 | 66 | 8 | 7 | 180 | 167 | 328 | 1.16e-36 | 130 |
| MS.gene32976.t1 | MTR_3g029800 | 45.604 | 182 | 74 | 7 | 1 | 178 | 195 | 355 | 4.46e-36 | 129 |
| MS.gene32976.t1 | MTR_1g007220 | 45.349 | 172 | 55 | 3 | 1 | 171 | 34 | 167 | 5.74e-36 | 124 |
| MS.gene32976.t1 | MTR_3g047980 | 45.856 | 181 | 53 | 7 | 6 | 178 | 216 | 359 | 8.45e-34 | 123 |
| MS.gene32976.t1 | MTR_3g029950 | 44.792 | 192 | 68 | 8 | 1 | 180 | 203 | 368 | 1.57e-33 | 122 |
| MS.gene32976.t1 | MTR_3g058460 | 42.781 | 187 | 88 | 5 | 1 | 178 | 199 | 375 | 1.54e-32 | 120 |
| MS.gene32976.t1 | MTR_6g018370 | 52.500 | 120 | 48 | 3 | 1 | 117 | 146 | 259 | 2.89e-29 | 108 |
| MS.gene32976.t1 | MTR_3g029870 | 42.222 | 180 | 65 | 6 | 14 | 180 | 182 | 335 | 5.40e-29 | 110 |
| MS.gene32976.t1 | MTR_4g022880 | 43.478 | 138 | 70 | 2 | 50 | 181 | 39 | 174 | 4.28e-28 | 103 |
| MS.gene32976.t1 | MTR_7g005990 | 39.444 | 180 | 67 | 6 | 9 | 180 | 213 | 358 | 1.92e-24 | 98.2 |
| MS.gene32976.t1 | MTR_1g007200 | 49.038 | 104 | 40 | 3 | 62 | 163 | 1 | 93 | 1.49e-20 | 82.8 |
| MS.gene32976.t1 | MTR_8g035995 | 46.535 | 101 | 47 | 2 | 10 | 110 | 1 | 94 | 9.58e-18 | 76.3 |
| MS.gene32976.t1 | MTR_8g074610 | 30.108 | 186 | 102 | 5 | 4 | 178 | 227 | 395 | 1.04e-15 | 74.3 |
| MS.gene32976.t1 | MTR_2g041510 | 36.620 | 142 | 73 | 4 | 4 | 133 | 200 | 336 | 2.96e-14 | 70.1 |
| MS.gene32976.t1 | MTR_2g041510 | 36.620 | 142 | 73 | 4 | 4 | 133 | 220 | 356 | 3.11e-14 | 70.1 |
| MS.gene32976.t1 | MTR_8g074640 | 33.929 | 168 | 82 | 6 | 2 | 154 | 206 | 359 | 2.74e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32976.t1 | AT2G17030 | 36.842 | 190 | 96 | 5 | 7 | 178 | 207 | 390 | 2.44e-26 | 103 |
| MS.gene32976.t1 | AT2G17036 | 34.409 | 186 | 101 | 5 | 7 | 178 | 205 | 383 | 6.90e-25 | 100 |
| MS.gene32976.t1 | AT2G17036 | 34.409 | 186 | 101 | 5 | 7 | 178 | 206 | 384 | 6.97e-25 | 100 |
Find 39 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGAGAAGGAGAGTAAA+TGG | 0.206024 | 1.1:+5670902 | MS.gene32976:CDS |
| ATGGGTTGATTTGATGAGTT+TGG | 0.251492 | 1.1:+5670921 | MS.gene32976:CDS |
| TTAACCACAAGTTCATATTT+AGG | 0.261634 | 1.1:-5670760 | None:intergenic |
| ATTTGATGAGTTTGGGAGAT+AGG | 0.289011 | 1.1:+5670929 | MS.gene32976:CDS |
| AAATATGAACTTGTGGTTAA+TGG | 0.323243 | 1.1:+5670763 | MS.gene32976:CDS |
| GTGGACATTTATGAGTGTTT+AGG | 0.334870 | 1.1:+5670832 | MS.gene32976:CDS |
| CCAATTCCATCAATCATATA+AGG | 0.345857 | 1.1:-5670682 | None:intergenic |
| CGGACAATTATTGTTGGACT+TGG | 0.356140 | 1.1:+5670706 | MS.gene32976:CDS |
| TTCACCTTTGTCTGATTGTC+CGG | 0.356602 | 1.1:+5671113 | MS.gene32976:CDS |
| GCAAGATAACATACTCTGTT+AGG | 0.372490 | 1.1:-5671189 | None:intergenic |
| CAGAACAAGTTAAAATATTC+CGG | 0.384086 | 1.1:-5671132 | None:intergenic |
| CCTTATATGATTGATGGAAT+TGG | 0.407615 | 1.1:+5670682 | MS.gene32976:CDS |
| TACTGATATGTCTATGTACT+TGG | 0.428125 | 1.1:+5670633 | None:intergenic |
| TGATGAGAAGGAGAGTAAAT+GGG | 0.446912 | 1.1:+5670903 | MS.gene32976:CDS |
| TGTATCTTTGACTTGGATCA+AGG | 0.447583 | 1.1:+5671084 | MS.gene32976:CDS |
| GGGCGGCCTTATATGATTGA+TGG | 0.452306 | 1.1:+5670676 | MS.gene32976:CDS |
| TGGGTTGATTTGATGAGTTT+GGG | 0.459847 | 1.1:+5670922 | MS.gene32976:CDS |
| TGTGTTTAGGTTTGATGAGA+AGG | 0.463451 | 1.1:+5670891 | MS.gene32976:CDS |
| TTTGATGAGTTTGGGAGATA+GGG | 0.474756 | 1.1:+5670930 | MS.gene32976:CDS |
| GATCGCATGACTTCGATGAC+TGG | 0.480649 | 1.1:+5670728 | MS.gene32976:CDS |
| ATTGGTCGGACAATTATTGT+TGG | 0.482444 | 1.1:+5670700 | MS.gene32976:CDS |
| CAGATTTGTGTGTTTCTAGA+GGG | 0.519276 | 1.1:+5670995 | MS.gene32976:CDS |
| TGGGAACTGTATCTTTGACT+TGG | 0.526556 | 1.1:+5671077 | MS.gene32976:CDS |
| TATGAACTTGTGGTTAATGG+TGG | 0.543129 | 1.1:+5670766 | MS.gene32976:CDS |
| TGAGGGCGCGTTGCTGCGAG+TGG | 0.554191 | 1.1:+5670813 | MS.gene32976:CDS |
| TCAGATTTGTGTGTTTCTAG+AGG | 0.559601 | 1.1:+5670994 | MS.gene32976:CDS |
| TGAACTTGTGGTTAATGGTG+GGG | 0.569319 | 1.1:+5670768 | MS.gene32976:CDS |
| GAACTTGTGGTTAATGGTGG+GGG | 0.582058 | 1.1:+5670769 | MS.gene32976:CDS |
| ATGAACTTGTGGTTAATGGT+GGG | 0.584883 | 1.1:+5670767 | MS.gene32976:CDS |
| TTGTCGATCCACTCTGTAGG+TGG | 0.596783 | 1.1:-5671156 | None:intergenic |
| ACCACCTAAATATGAACTTG+TGG | 0.597935 | 1.1:+5670756 | MS.gene32976:CDS |
| ACTGATATGTCTATGTACTT+GGG | 0.602971 | 1.1:+5670634 | None:intergenic |
| ACCACAAGTTCATATTTAGG+TGG | 0.605610 | 1.1:-5670757 | None:intergenic |
| AAAATTCTTAGTGGAGAGTG+AGG | 0.612751 | 1.1:+5670795 | MS.gene32976:CDS |
| CATTTGTCGATCCACTCTGT+AGG | 0.617177 | 1.1:-5671159 | None:intergenic |
| ATATGATTGATGGAATTGGT+CGG | 0.636318 | 1.1:+5670686 | MS.gene32976:CDS |
| AAATTCTTAGTGGAGAGTGA+GGG | 0.668174 | 1.1:+5670796 | MS.gene32976:CDS |
| TATTCCGGACAATCAGACAA+AGG | 0.675553 | 1.1:-5671117 | None:intergenic |
| TGTTCTGGCCACCTACAGAG+TGG | 0.683477 | 1.1:+5671148 | MS.gene32976:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTAAAAACATGCAATA+TGG | + | chr1.1:5671057-5671076 | MS.gene32976:CDS | 20.0% |
| !! | ATTGTAAAAACATGCAATAT+GGG | + | chr1.1:5671058-5671077 | MS.gene32976:CDS | 20.0% |
| !!! | TTTTAAGGATTAATGTGTTT+AGG | + | chr1.1:5670878-5670897 | MS.gene32976:CDS | 20.0% |
| ! | AAATATGAACTTGTGGTTAA+TGG | + | chr1.1:5670763-5670782 | MS.gene32976:CDS | 25.0% |
| ! | CAGAACAAGTTAAAATATTC+CGG | - | chr1.1:5671135-5671154 | None:intergenic | 25.0% |
| ! | GTTGAAAAGATTATCTAATC+TGG | - | chr1.1:5671238-5671257 | None:intergenic | 25.0% |
| ! | TTAACCACAAGTTCATATTT+AGG | - | chr1.1:5670763-5670782 | None:intergenic | 25.0% |
| !!! | TGTTTAGGTTTTGATTACTT+CGG | + | chr1.1:5670847-5670866 | MS.gene32976:CDS | 25.0% |
| AAGATTATCTAATCTGGCAA+CGG | - | chr1.1:5671232-5671251 | None:intergenic | 30.0% | |
| ATATGATTGATGGAATTGGT+CGG | + | chr1.1:5670686-5670705 | MS.gene32976:CDS | 30.0% | |
| CCAATTCCATCAATCATATA+AGG | - | chr1.1:5670685-5670704 | None:intergenic | 30.0% | |
| CCTTATATGATTGATGGAAT+TGG | + | chr1.1:5670682-5670701 | MS.gene32976:CDS | 30.0% | |
| ! | ACTTCGGTAAGAATGTTTTA+AGG | + | chr1.1:5670863-5670882 | MS.gene32976:CDS | 30.0% |
| !!! | CGGAATATTTTAACTTGTTC+TGG | + | chr1.1:5671133-5671152 | MS.gene32976:CDS | 30.0% |
| AAAATTCTTAGTGGAGAGTG+AGG | + | chr1.1:5670795-5670814 | MS.gene32976:CDS | 35.0% | |
| AAATTCTTAGTGGAGAGTGA+GGG | + | chr1.1:5670796-5670815 | MS.gene32976:CDS | 35.0% | |
| ACCACAAGTTCATATTTAGG+TGG | - | chr1.1:5670760-5670779 | None:intergenic | 35.0% | |
| ACCACCTAAATATGAACTTG+TGG | + | chr1.1:5670756-5670775 | MS.gene32976:CDS | 35.0% | |
| ATGAACTTGTGGTTAATGGT+GGG | + | chr1.1:5670767-5670786 | MS.gene32976:CDS | 35.0% | |
| ATTGGTCGGACAATTATTGT+TGG | + | chr1.1:5670700-5670719 | MS.gene32976:CDS | 35.0% | |
| ATTTGATGAGTTTGGGAGAT+AGG | + | chr1.1:5670929-5670948 | MS.gene32976:CDS | 35.0% | |
| GCAAGATAACATACTCTGTT+AGG | - | chr1.1:5671192-5671211 | None:intergenic | 35.0% | |
| GTGGACATTTATGAGTGTTT+AGG | + | chr1.1:5670832-5670851 | MS.gene32976:CDS | 35.0% | |
| TATGAACTTGTGGTTAATGG+TGG | + | chr1.1:5670766-5670785 | MS.gene32976:CDS | 35.0% | |
| TGATGAGAAGGAGAGTAAAT+GGG | + | chr1.1:5670903-5670922 | MS.gene32976:CDS | 35.0% | |
| TTGATGAGAAGGAGAGTAAA+TGG | + | chr1.1:5670902-5670921 | MS.gene32976:CDS | 35.0% | |
| TTTGATGAGTTTGGGAGATA+GGG | + | chr1.1:5670930-5670949 | MS.gene32976:CDS | 35.0% | |
| ! | TGTGTTTAGGTTTGATGAGA+AGG | + | chr1.1:5670891-5670910 | MS.gene32976:CDS | 35.0% |
| !! | ATGGGTTGATTTGATGAGTT+TGG | + | chr1.1:5670921-5670940 | MS.gene32976:CDS | 35.0% |
| !! | CAGATTTGTGTGTTTCTAGA+GGG | + | chr1.1:5670995-5671014 | MS.gene32976:CDS | 35.0% |
| !! | TCAGATTTGTGTGTTTCTAG+AGG | + | chr1.1:5670994-5671013 | MS.gene32976:CDS | 35.0% |
| !! | TGGGTTGATTTGATGAGTTT+GGG | + | chr1.1:5670922-5670941 | MS.gene32976:CDS | 35.0% |
| !! | TGTATCTTTGACTTGGATCA+AGG | + | chr1.1:5671084-5671103 | MS.gene32976:CDS | 35.0% |
| !!! | GAGATAGGGTTTTGTTTTTG+GGG | + | chr1.1:5670944-5670963 | MS.gene32976:CDS | 35.0% |
| !!! | GGAGATAGGGTTTTGTTTTT+GGG | + | chr1.1:5670943-5670962 | MS.gene32976:CDS | 35.0% |
| CGGACAATTATTGTTGGACT+TGG | + | chr1.1:5670706-5670725 | MS.gene32976:CDS | 40.0% | |
| TATTCCGGACAATCAGACAA+AGG | - | chr1.1:5671120-5671139 | None:intergenic | 40.0% | |
| TGAACTTGTGGTTAATGGTG+GGG | + | chr1.1:5670768-5670787 | MS.gene32976:CDS | 40.0% | |
| TGGGAACTGTATCTTTGACT+TGG | + | chr1.1:5671077-5671096 | MS.gene32976:CDS | 40.0% | |
| TGGGGGCAAAAAATTCTTAG+TGG | + | chr1.1:5670786-5670805 | MS.gene32976:CDS | 40.0% | |
| TTCACCTTTGTCTGATTGTC+CGG | + | chr1.1:5671113-5671132 | MS.gene32976:CDS | 40.0% | |
| ! | GAGACATCTGCGTTTTCAAA+GGG | + | chr1.1:5670656-5670675 | MS.gene32976:CDS | 40.0% |
| !!! | AGGGTTTTGTTTTTGGGGAA+TGG | + | chr1.1:5670949-5670968 | MS.gene32976:CDS | 40.0% |
| !!! | GGGAGATAGGGTTTTGTTTT+TGG | + | chr1.1:5670942-5670961 | MS.gene32976:CDS | 40.0% |
| CATTTGTCGATCCACTCTGT+AGG | - | chr1.1:5671162-5671181 | None:intergenic | 45.0% | |
| GAACTTGTGGTTAATGGTGG+GGG | + | chr1.1:5670769-5670788 | MS.gene32976:CDS | 45.0% | |
| ! | ACATCTGCGTTTTCAAAGGG+CGG | + | chr1.1:5670659-5670678 | MS.gene32976:CDS | 45.0% |
| ! | GGAGACATCTGCGTTTTCAA+AGG | + | chr1.1:5670655-5670674 | MS.gene32976:CDS | 45.0% |
| GATCGCATGACTTCGATGAC+TGG | + | chr1.1:5670728-5670747 | MS.gene32976:CDS | 50.0% | |
| TTGTCGATCCACTCTGTAGG+TGG | - | chr1.1:5671159-5671178 | None:intergenic | 50.0% | |
| ! | GGGCGGCCTTATATGATTGA+TGG | + | chr1.1:5670676-5670695 | MS.gene32976:CDS | 50.0% |
| TGTTCTGGCCACCTACAGAG+TGG | + | chr1.1:5671148-5671167 | MS.gene32976:CDS | 55.0% | |
| ! | TGAGGGCGCGTTGCTGCGAG+TGG | + | chr1.1:5670813-5670832 | MS.gene32976:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 5670640 | 5671274 | 5670640 | ID=MS.gene32976 |
| chr1.1 | mRNA | 5670640 | 5671274 | 5670640 | ID=MS.gene32976.t1;Parent=MS.gene32976 |
| chr1.1 | exon | 5670640 | 5671197 | 5670640 | ID=MS.gene32976.t1.exon1;Parent=MS.gene32976.t1 |
| chr1.1 | CDS | 5670640 | 5671197 | 5670640 | ID=cds.MS.gene32976.t1;Parent=MS.gene32976.t1 |
| chr1.1 | exon | 5671269 | 5671274 | 5671269 | ID=MS.gene32976.t1.exon2;Parent=MS.gene32976.t1 |
| chr1.1 | CDS | 5671269 | 5671274 | 5671269 | ID=cds.MS.gene32976.t1;Parent=MS.gene32976.t1 |
| Gene Sequence |
| Protein sequence |
