Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37236.t1 | RHN50250.1 | 98.3 | 175 | 3 | 0 | 1 | 175 | 68 | 242 | 6.90E-86 | 326.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37236.t1 | Q9SRU7 | 57.5 | 174 | 54 | 2 | 1 | 174 | 1 | 154 | 3.2e-39 | 162.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37236.t1 | A0A072U6X6 | 98.3 | 175 | 3 | 0 | 1 | 175 | 1 | 175 | 5.0e-86 | 326.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene37236 | 0.803974 | 2.70E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene37236 | 0.804448 | 2.15E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene37236 | 0.820614 | 6.25E-53 | -1.69E-46 |
| MS.gene050084 | MS.gene37236 | 0.837838 | 4.10E-57 | -1.69E-46 |
| MS.gene050085 | MS.gene37236 | 0.856235 | 3.69E-62 | -1.69E-46 |
| MS.gene050359 | MS.gene37236 | 0.809427 | 1.90E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene37236 | 0.815849 | 7.49E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene37236 | 0.827929 | 1.19E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene37236 | 0.832878 | 7.35E-56 | -1.69E-46 |
| MS.gene050945 | MS.gene37236 | 0.830311 | 3.15E-55 | -1.69E-46 |
| MS.gene051003 | MS.gene37236 | 0.834188 | 3.46E-56 | -1.69E-46 |
| MS.gene051233 | MS.gene37236 | 0.813507 | 2.47E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene37236 | 0.838287 | 3.15E-57 | -1.69E-46 |
| MS.gene051343 | MS.gene37236 | 0.83123 | 1.88E-55 | -1.69E-46 |
| MS.gene051676 | MS.gene37236 | 0.813556 | 2.41E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene37236 | 0.834387 | 3.09E-56 | -1.69E-46 |
| MS.gene051902 | MS.gene37236 | 0.838667 | 2.51E-57 | -1.69E-46 |
| MS.gene051975 | MS.gene37236 | 0.840527 | 8.24E-58 | -1.69E-46 |
| MS.gene052072 | MS.gene37236 | 0.806045 | 9.95E-50 | -1.69E-46 |
| MS.gene052242 | MS.gene37236 | -0.829092 | 6.25E-55 | -1.69E-46 |
| MS.gene052342 | MS.gene37236 | 0.833823 | 4.27E-56 | -1.69E-46 |
| MS.gene052434 | MS.gene37236 | 0.803689 | 3.09E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene37236 | 0.810192 | 1.30E-50 | -1.69E-46 |
| MS.gene052932 | MS.gene37236 | 0.810999 | 8.72E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene37236 | 0.803147 | 4.01E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene37236 | 0.872351 | 3.40E-67 | -1.69E-46 |
| MS.gene053564 | MS.gene37236 | 0.831481 | 1.63E-55 | -1.69E-46 |
| MS.gene055311 | MS.gene37236 | 0.846872 | 1.65E-59 | -1.69E-46 |
| MS.gene055313 | MS.gene37236 | 0.833818 | 4.29E-56 | -1.69E-46 |
| MS.gene055314 | MS.gene37236 | 0.844369 | 7.89E-59 | -1.69E-46 |
| MS.gene055513 | MS.gene37236 | 0.81234 | 4.45E-51 | -1.69E-46 |
| MS.gene056045 | MS.gene37236 | 0.867439 | 1.37E-65 | -1.69E-46 |
| MS.gene056097 | MS.gene37236 | 0.81346 | 2.53E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene37236 | 0.839524 | 1.51E-57 | -1.69E-46 |
| MS.gene056403 | MS.gene37236 | 0.850649 | 1.48E-60 | -1.69E-46 |
| MS.gene056509 | MS.gene37236 | 0.803616 | 3.20E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene37236 | 0.854307 | 1.34E-61 | -1.69E-46 |
| MS.gene056787 | MS.gene37236 | 0.813544 | 2.43E-51 | -1.69E-46 |
| MS.gene05689 | MS.gene37236 | 0.827659 | 1.38E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene37236 | 0.817361 | 3.43E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene37236 | 0.811259 | 7.66E-51 | -1.69E-46 |
| MS.gene05781 | MS.gene37236 | 0.839333 | 1.69E-57 | -1.69E-46 |
| MS.gene057890 | MS.gene37236 | -0.820856 | 5.50E-53 | -1.69E-46 |
| MS.gene058054 | MS.gene37236 | 0.80547 | 1.31E-49 | -1.69E-46 |
| MS.gene058261 | MS.gene37236 | 0.813488 | 2.50E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene37236 | 0.801602 | 8.33E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene37236 | 0.821329 | 4.28E-53 | -1.69E-46 |
| MS.gene058639 | MS.gene37236 | 0.833122 | 6.39E-56 | -1.69E-46 |
| MS.gene059007 | MS.gene37236 | 0.812413 | 4.29E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene37236 | 0.846647 | 1.90E-59 | -1.69E-46 |
| MS.gene059170 | MS.gene37236 | 0.810201 | 1.30E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene37236 | 0.822958 | 1.79E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene37236 | -0.802677 | 5.01E-49 | -1.69E-46 |
| MS.gene06010 | MS.gene37236 | 0.818283 | 2.13E-52 | -1.69E-46 |
| MS.gene06011 | MS.gene37236 | 0.82191 | 3.14E-53 | -1.69E-46 |
| MS.gene060296 | MS.gene37236 | 0.81905 | 1.42E-52 | -1.69E-46 |
| MS.gene060365 | MS.gene37236 | 0.803996 | 2.67E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene37236 | 0.847186 | 1.36E-59 | -1.69E-46 |
| MS.gene060777 | MS.gene37236 | 0.802273 | 6.07E-49 | -1.69E-46 |
| MS.gene060830 | MS.gene37236 | 0.803229 | 3.85E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene37236 | 0.809284 | 2.04E-50 | -1.69E-46 |
| MS.gene060870 | MS.gene37236 | 0.809626 | 1.72E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene37236 | 0.82524 | 5.22E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene37236 | 0.813555 | 2.41E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene37236 | 0.8115 | 6.79E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene37236 | 0.825841 | 3.76E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37236.t1 | MTR_6g015885 | 98.286 | 175 | 3 | 0 | 1 | 175 | 1 | 175 | 2.33e-119 | 350 |
| MS.gene37236.t1 | MTR_6g015885 | 98.286 | 175 | 3 | 0 | 1 | 175 | 59 | 233 | 6.00e-119 | 350 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37236.t1 | AT5G15810 | 57.143 | 175 | 55 | 1 | 1 | 175 | 1 | 155 | 5.41e-55 | 183 |
| MS.gene37236.t1 | AT3G02320 | 57.471 | 174 | 54 | 2 | 1 | 174 | 1 | 154 | 3.48e-52 | 175 |
Find 37 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTCTGCTTCTGGTTTA+AGG | 0.077465 | 6.3:+10836568 | MS.gene37236:CDS |
| CAAAACAATGGCTACAAATT+TGG | 0.171265 | 6.3:+10835271 | None:intergenic |
| CCATTTGACTTATGATCTTC+TGG | 0.209624 | 6.3:-10836212 | None:intergenic |
| CTTGTCTGCTTCTGGTTTAA+GGG | 0.240651 | 6.3:+10836569 | MS.gene37236:CDS |
| ATATAGGCCTTGTCTGCTTC+TGG | 0.341486 | 6.3:+10836561 | MS.gene37236:intron |
| TGAAAATGATTCTTCTGAAA+TGG | 0.384979 | 6.3:+10836160 | MS.gene37236:CDS |
| AGATATGCTCGTGAAATAGA+AGG | 0.389227 | 6.3:+10836597 | MS.gene37236:CDS |
| CTCGGTGGCTCCAGCTCTGC+CGG | 0.390513 | 6.3:-10836359 | None:intergenic |
| CCAGAAGATCATAAGTCAAA+TGG | 0.427035 | 6.3:+10836212 | MS.gene37236:CDS |
| GATTGGTCAGGTTGTTGCTC+TGG | 0.436460 | 6.3:+10836620 | MS.gene37236:CDS |
| GTTGCTCTGGACAACGATCC+AGG | 0.448540 | 6.3:+10836633 | MS.gene37236:CDS |
| TGAAGAGCAAGTTGATGATT+CGG | 0.448596 | 6.3:+10836325 | MS.gene37236:CDS |
| TGAAGAATATTTGTTGAAGA+AGG | 0.452680 | 6.3:+10836115 | MS.gene37236:CDS |
| TTAGCGGAAGAGACATCTCC+TGG | 0.459743 | 6.3:+10836245 | MS.gene37236:CDS |
| TATTTGTTGAAGAAGGCAAA+AGG | 0.464282 | 6.3:+10836122 | MS.gene37236:CDS |
| TGAGGGCATTTATATCGAAA+AGG | 0.511483 | 6.3:+10836081 | MS.gene37236:CDS |
| ATTTGTTGAAGAAGGCAAAA+GGG | 0.517312 | 6.3:+10836123 | MS.gene37236:CDS |
| TGAAATAGAAGGGATTGGTC+AGG | 0.527480 | 6.3:+10836608 | MS.gene37236:CDS |
| TGATTCTTCTGAAATGGTTG+TGG | 0.527746 | 6.3:+10836166 | MS.gene37236:CDS |
| TTTGACTTATGATCTTCTGG+TGG | 0.528551 | 6.3:-10836209 | None:intergenic |
| ATTGTAGTGCATGATTCTCC+AGG | 0.531662 | 6.3:-10836263 | None:intergenic |
| GCTCGTGAAATAGAAGGGAT+TGG | 0.551513 | 6.3:+10836603 | MS.gene37236:CDS |
| AAATGGAAAATGTGAGTTAG+CGG | 0.567232 | 6.3:+10836229 | MS.gene37236:CDS |
| GGAGCCACCGAGGGTTCTTG+AGG | 0.571951 | 6.3:+10836370 | MS.gene37236:CDS |
| CCTTAAACCAGAAGCAGACA+AGG | 0.574066 | 6.3:-10836568 | None:intergenic |
| AACGGAACCTCAAGAACCCT+CGG | 0.579021 | 6.3:-10836377 | None:intergenic |
| TGGAGAATCATGCACTACAA+TGG | 0.582816 | 6.3:+10836265 | MS.gene37236:CDS |
| AAATGCCCTCAAAACAGCAA+TGG | 0.583692 | 6.3:-10836069 | None:intergenic |
| GAATCATGCACTACAATGGA+AGG | 0.591686 | 6.3:+10836269 | MS.gene37236:CDS |
| TTTGTTGAAGAAGGCAAAAG+GGG | 0.591696 | 6.3:+10836124 | MS.gene37236:CDS |
| GGCAGAGCTGGAGCCACCGA+GGG | 0.604326 | 6.3:+10836361 | MS.gene37236:CDS |
| GATATGCTCGTGAAATAGAA+GGG | 0.606358 | 6.3:+10836598 | MS.gene37236:CDS |
| TTCTTCTGAAATGGTTGTGG+AGG | 0.613449 | 6.3:+10836169 | MS.gene37236:CDS |
| GAGCAAGTTGATGATTCGGA+AGG | 0.620607 | 6.3:+10836329 | MS.gene37236:CDS |
| GTCAAGATCGATGAAGAATG+TGG | 0.653077 | 6.3:+10836296 | MS.gene37236:CDS |
| CGGCAGAGCTGGAGCCACCG+AGG | 0.657470 | 6.3:+10836360 | MS.gene37236:CDS |
| GGAACCTCAAGAACCCTCGG+TGG | 0.759107 | 6.3:-10836374 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAATTAAAATTCAATT+AGG | - | chr6.3:10835605-10835624 | None:intergenic | 10.0% |
| !! | AAAGAATTAAAATTCAATTA+GGG | - | chr6.3:10835604-10835623 | None:intergenic | 10.0% |
| !! | AAAAATCTAAACTTTCAATT+AGG | - | chr6.3:10835459-10835478 | None:intergenic | 15.0% |
| !! | AAAATCTAAACTTTCAATTA+GGG | - | chr6.3:10835458-10835477 | None:intergenic | 15.0% |
| !! | AACATAAATGAGTTATATAA+AGG | - | chr6.3:10836418-10836437 | None:intergenic | 15.0% |
| !! | TTTATGATGAAAAAAATGAT+GGG | + | chr6.3:10835640-10835659 | MS.gene37236:intron | 15.0% |
| !! | AAAACAATTATACAAAACTG+AGG | - | chr6.3:10835954-10835973 | None:intergenic | 20.0% |
| !! | AAAATTGAAACTTGAGTAAT+GGG | + | chr6.3:10835527-10835546 | MS.gene37236:intron | 20.0% |
| !! | AAATAAGTGCATGTTTATAT+TGG | - | chr6.3:10835910-10835929 | None:intergenic | 20.0% |
| !! | ACAAAATTGAAACTTGAATA+TGG | + | chr6.3:10835669-10835688 | MS.gene37236:intron | 20.0% |
| !! | CAAAATTGAAACTTGAATAT+GGG | + | chr6.3:10835670-10835689 | MS.gene37236:intron | 20.0% |
| !! | CAAATCCAATATAACAAAAA+GGG | - | chr6.3:10835406-10835425 | None:intergenic | 20.0% |
| !! | GTTTATGATGAAAAAAATGA+TGG | + | chr6.3:10835639-10835658 | MS.gene37236:intron | 20.0% |
| !! | TCAAATCCAATATAACAAAA+AGG | - | chr6.3:10835407-10835426 | None:intergenic | 20.0% |
| !!! | ATTCTTTTTAATCCAATGTT+TGG | + | chr6.3:10835617-10835636 | MS.gene37236:intron | 20.0% |
| !!! | CAGTTTTGTATAATTGTTTT+TGG | + | chr6.3:10835954-10835973 | MS.gene37236:intron | 20.0% |
| !!! | TTTATCCCTTTTTGTTATAT+TGG | + | chr6.3:10835398-10835417 | MS.gene37236:intron | 20.0% |
| ! | AAATTGAAACTTGAGTAATG+GGG | + | chr6.3:10835528-10835547 | MS.gene37236:intron | 25.0% |
| ! | CAAAATTGAAACTTGAGTAA+TGG | + | chr6.3:10835526-10835545 | MS.gene37236:intron | 25.0% |
| ! | CACAAAACCAGAATAAATAT+AGG | - | chr6.3:10836022-10836041 | None:intergenic | 25.0% |
| ! | GATTGAACCTATATTTATTC+TGG | + | chr6.3:10836012-10836031 | MS.gene37236:intron | 25.0% |
| ! | TATCGAATTAACAATAGTGA+TGG | - | chr6.3:10836453-10836472 | None:intergenic | 25.0% |
| ! | TTATATAAAGGACGTCTAAA+GGG | - | chr6.3:10836406-10836425 | None:intergenic | 25.0% |
| ! | TTTCATCATAAACCAAACAT+TGG | - | chr6.3:10835632-10835651 | None:intergenic | 25.0% |
| !! | GAATTTTTGTGAAATGATTG+TGG | + | chr6.3:10835708-10835727 | MS.gene37236:intron | 25.0% |
| !! | GATTTTACAGTTATTAAGGA+AGG | + | chr6.3:10835296-10835315 | MS.gene37236:CDS | 25.0% |
| !! | GGATGATTTTACAGTTATTA+AGG | + | chr6.3:10835292-10835311 | MS.gene37236:CDS | 25.0% |
| !! | GGATTTGAAATTTGAAATCA+GGG | + | chr6.3:10835419-10835438 | MS.gene37236:intron | 25.0% |
| !! | GTTTATATTGGAAGTGATTT+TGG | - | chr6.3:10835898-10835917 | None:intergenic | 25.0% |
| !! | TGAAAATGATTCTTCTGAAA+TGG | + | chr6.3:10836160-10836179 | MS.gene37236:CDS | 25.0% |
| !! | TGAAGAATATTTGTTGAAGA+AGG | + | chr6.3:10836115-10836134 | MS.gene37236:CDS | 25.0% |
| !! | TGGATTTGAAATTTGAAATC+AGG | + | chr6.3:10835418-10835437 | MS.gene37236:intron | 25.0% |
| !! | TGGTGATTTTGAATGTTAAT+TGG | + | chr6.3:10835736-10835755 | MS.gene37236:intron | 25.0% |
| !!! | TATTAAGTAGTTTTGTGGTT+AGG | + | chr6.3:10835761-10835780 | MS.gene37236:intron | 25.0% |
| !!! | TCTTTTATTTGTCTGCATAT+AGG | + | chr6.3:10836545-10836564 | MS.gene37236:intron | 25.0% |
| !!! | TGATTTTCAGGTTAATAACA+GGG | + | chr6.3:10836040-10836059 | MS.gene37236:intron | 25.0% |
| !!! | TGGATTATTAAGTAGTTTTG+TGG | + | chr6.3:10835756-10835775 | MS.gene37236:intron | 25.0% |
| AAATGGAAAATGTGAGTTAG+CGG | + | chr6.3:10836229-10836248 | MS.gene37236:CDS | 30.0% | |
| ACTTTGAATTTGACCAAATC+AGG | + | chr6.3:10835830-10835849 | MS.gene37236:intron | 30.0% | |
| CTTTGAATTTGACCAAATCA+GGG | + | chr6.3:10835831-10835850 | MS.gene37236:intron | 30.0% | |
| GAGAGCAAATAAGTTAAATC+AGG | - | chr6.3:10836476-10836495 | None:intergenic | 30.0% | |
| GTGAAATGATTGTGGTTTAT+TGG | + | chr6.3:10835716-10835735 | MS.gene37236:intron | 30.0% | |
| GTTATATAAAGGACGTCTAA+AGG | - | chr6.3:10836407-10836426 | None:intergenic | 30.0% | |
| TGGTTTATGGTGAAAGAAAA+TGG | + | chr6.3:10835492-10835511 | MS.gene37236:intron | 30.0% | |
| TTATGGTGAAAGAAAATGGT+GGG | + | chr6.3:10835496-10835515 | MS.gene37236:intron | 30.0% | |
| TTTATGGTGAAAGAAAATGG+TGG | + | chr6.3:10835495-10835514 | MS.gene37236:intron | 30.0% | |
| ! | ATTTGTTGAAGAAGGCAAAA+GGG | + | chr6.3:10836123-10836142 | MS.gene37236:CDS | 30.0% |
| ! | TATTTGTTGAAGAAGGCAAA+AGG | + | chr6.3:10836122-10836141 | MS.gene37236:CDS | 30.0% |
| !! | GAAATTTGGCTTTGAAATCA+TGG | + | chr6.3:10835565-10835584 | MS.gene37236:intron | 30.0% |
| !!! | AGTCTTTTTCAATAAAGCTC+AGG | + | chr6.3:10835352-10835371 | MS.gene37236:CDS | 30.0% |
| !!! | ATTCTGGTTTTGTGATTTTC+AGG | + | chr6.3:10836028-10836047 | MS.gene37236:intron | 30.0% |
| !!! | GATTTTTAGTGTCTGATGTT+TGG | + | chr6.3:10835472-10835491 | MS.gene37236:intron | 30.0% |
| !!! | GTGATTTTCAGGTTAATAAC+AGG | + | chr6.3:10836039-10836058 | MS.gene37236:intron | 30.0% |
| AGATATGCTCGTGAAATAGA+AGG | + | chr6.3:10836597-10836616 | MS.gene37236:CDS | 35.0% | |
| CATTCCAAACATATCCTAAG+TGG | - | chr6.3:10835810-10835829 | None:intergenic | 35.0% | |
| CCAGAAGATCATAAGTCAAA+TGG | + | chr6.3:10836212-10836231 | MS.gene37236:CDS | 35.0% | |
| CTTTCCACTTAGGATATGTT+TGG | + | chr6.3:10835803-10835822 | MS.gene37236:intron | 35.0% | |
| GATACAATCACTTTCCACTT+AGG | + | chr6.3:10835793-10835812 | MS.gene37236:intron | 35.0% | |
| GATATGCTCGTGAAATAGAA+GGG | + | chr6.3:10836598-10836617 | MS.gene37236:CDS | 35.0% | |
| TTTGTTGAAGAAGGCAAAAG+GGG | + | chr6.3:10836124-10836143 | MS.gene37236:CDS | 35.0% | |
| ! | AGTGTCTGATGTTTGGTTTA+TGG | + | chr6.3:10835479-10835498 | MS.gene37236:intron | 35.0% |
| ! | CCATTTGACTTATGATCTTC+TGG | - | chr6.3:10836215-10836234 | None:intergenic | 35.0% |
| ! | TTTGACTTATGATCTTCTGG+TGG | - | chr6.3:10836212-10836231 | None:intergenic | 35.0% |
| !! | GTGGCAATGTGAATTTGTTA+CGG | + | chr6.3:10835853-10835872 | MS.gene37236:intron | 35.0% |
| !! | TGAAGAGCAAGTTGATGATT+CGG | + | chr6.3:10836325-10836344 | MS.gene37236:CDS | 35.0% |
| !! | TGAGGGCATTTATATCGAAA+AGG | + | chr6.3:10836081-10836100 | MS.gene37236:CDS | 35.0% |
| !! | TGATTCTTCTGAAATGGTTG+TGG | + | chr6.3:10836166-10836185 | MS.gene37236:CDS | 35.0% |
| !!! | ATATGGGATGATGCTGATTT+TGG | + | chr6.3:10835686-10835705 | MS.gene37236:intron | 35.0% |
| !!! | ATTTGTCCATTGCTGTTTTG+AGG | + | chr6.3:10836063-10836082 | MS.gene37236:CDS | 35.0% |
| !!! | TGGTGCTGATTTTGGAAATT+TGG | + | chr6.3:10835551-10835570 | MS.gene37236:intron | 35.0% |
| !!! | TTTGTCCATTGCTGTTTTGA+GGG | + | chr6.3:10836064-10836083 | MS.gene37236:CDS | 35.0% |
| AAATGCCCTCAAAACAGCAA+TGG | - | chr6.3:10836072-10836091 | None:intergenic | 40.0% | |
| ATTGTAGTGCATGATTCTCC+AGG | - | chr6.3:10836266-10836285 | None:intergenic | 40.0% | |
| GAATCATGCACTACAATGGA+AGG | + | chr6.3:10836269-10836288 | MS.gene37236:CDS | 40.0% | |
| GTCAAGATCGATGAAGAATG+TGG | + | chr6.3:10836296-10836315 | MS.gene37236:CDS | 40.0% | |
| TGAATTTGACCAAATCAGGG+TGG | + | chr6.3:10835834-10835853 | MS.gene37236:intron | 40.0% | |
| TGGAGAATCATGCACTACAA+TGG | + | chr6.3:10836265-10836284 | MS.gene37236:CDS | 40.0% | |
| ! | TGATTCGGAAGGAAAAAGAC+CGG | + | chr6.3:10836340-10836359 | MS.gene37236:CDS | 40.0% |
| ! | TTGAAACTTGAGTAATGGGG+TGG | + | chr6.3:10835531-10835550 | MS.gene37236:intron | 40.0% |
| !! | CTTGTCTGCTTCTGGTTTAA+GGG | + | chr6.3:10836569-10836588 | MS.gene37236:CDS | 40.0% |
| !! | TGAAATAGAAGGGATTGGTC+AGG | + | chr6.3:10836608-10836627 | MS.gene37236:CDS | 40.0% |
| !! | TTCTTCTGAAATGGTTGTGG+AGG | + | chr6.3:10836169-10836188 | MS.gene37236:CDS | 40.0% |
| AGGACGTCTAAAGGGACAAA+CGG | - | chr6.3:10836398-10836417 | None:intergenic | 45.0% | |
| CCTTAAACCAGAAGCAGACA+AGG | - | chr6.3:10836571-10836590 | None:intergenic | 45.0% | |
| GCTCGTGAAATAGAAGGGAT+TGG | + | chr6.3:10836603-10836622 | MS.gene37236:CDS | 45.0% | |
| TTCACATTGCCACCCTGATT+TGG | - | chr6.3:10835846-10835865 | None:intergenic | 45.0% | |
| ! | ATATAGGCCTTGTCTGCTTC+TGG | + | chr6.3:10836561-10836580 | MS.gene37236:intron | 45.0% |
| !! | CCTTGTCTGCTTCTGGTTTA+AGG | + | chr6.3:10836568-10836587 | MS.gene37236:CDS | 45.0% |
| !! | GAGCAAGTTGATGATTCGGA+AGG | + | chr6.3:10836329-10836348 | MS.gene37236:CDS | 45.0% |
| !!! | TAATGGGGTGGTGCTGATTT+TGG | + | chr6.3:10835543-10835562 | MS.gene37236:intron | 45.0% |
| AACGGAACCTCAAGAACCCT+CGG | - | chr6.3:10836380-10836399 | None:intergenic | 50.0% | |
| TTAGCGGAAGAGACATCTCC+TGG | + | chr6.3:10836245-10836264 | MS.gene37236:CDS | 50.0% | |
| ! | GATTGGTCAGGTTGTTGCTC+TGG | + | chr6.3:10836620-10836639 | MS.gene37236:CDS | 50.0% |
| AGGAAAAAGACCGGCAGAGC+TGG | + | chr6.3:10836349-10836368 | MS.gene37236:CDS | 55.0% | |
| GGAACCTCAAGAACCCTCGG+TGG | - | chr6.3:10836377-10836396 | None:intergenic | 60.0% | |
| GGAGCCACCGAGGGTTCTTG+AGG | + | chr6.3:10836370-10836389 | MS.gene37236:CDS | 65.0% | |
| CTCGGTGGCTCCAGCTCTGC+CGG | - | chr6.3:10836362-10836381 | None:intergenic | 70.0% | |
| GGCAGAGCTGGAGCCACCGA+GGG | + | chr6.3:10836361-10836380 | MS.gene37236:CDS | 70.0% | |
| CGGCAGAGCTGGAGCCACCG+AGG | + | chr6.3:10836360-10836379 | MS.gene37236:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 10835278 | 10836654 | 10835278 | ID=MS.gene37236 |
| chr6.3 | mRNA | 10835278 | 10836654 | 10835278 | ID=MS.gene37236.t1;Parent=MS.gene37236 |
| chr6.3 | exon | 10835278 | 10835373 | 10835278 | ID=MS.gene37236.t1.exon1;Parent=MS.gene37236.t1 |
| chr6.3 | CDS | 10835278 | 10835373 | 10835278 | ID=cds.MS.gene37236.t1;Parent=MS.gene37236.t1 |
| chr6.3 | exon | 10836050 | 10836391 | 10836050 | ID=MS.gene37236.t1.exon2;Parent=MS.gene37236.t1 |
| chr6.3 | CDS | 10836050 | 10836391 | 10836050 | ID=cds.MS.gene37236.t1;Parent=MS.gene37236.t1 |
| chr6.3 | exon | 10836567 | 10836654 | 10836567 | ID=MS.gene37236.t1.exon3;Parent=MS.gene37236.t1 |
| chr6.3 | CDS | 10836567 | 10836654 | 10836567 | ID=cds.MS.gene37236.t1;Parent=MS.gene37236.t1 |
| Gene Sequence |
| Protein sequence |
